Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Scaffold1
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 8764944
ACGTcount: A:0.31, C:0.15, G:0.15, T:0.31
Warning! 632878 characters in sequence are not A, C, G, or T
File 43 of 52
Found at i:7000358 original size:2 final size:2
Alignment explanation
Indices: 7000351--7000387 Score: 65
Period size: 2 Copynumber: 18.5 Consensus size: 2
7000341 GATTAAATTT
*
7000351 TA TA TA TA TA TA TA TA TA TA TG TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
7000388 GTATGGCATA
Statistics
Matches: 33, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
2 33 1.00
ACGTcount: A:0.46, C:0.00, G:0.03, T:0.51
Consensus pattern (2 bp):
TA
Found at i:7001759 original size:16 final size:17
Alignment explanation
Indices: 7001730--7001764 Score: 63
Period size: 16 Copynumber: 2.1 Consensus size: 17
7001720 AAATATTATA
7001730 TAAATAATAATTTAAAT
1 TAAATAATAATTTAAAT
7001747 TAAATAA-AATTTAAAT
1 TAAATAATAATTTAAAT
7001763 TA
1 TA
7001765 TTAAAATATA
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
16 11 0.61
17 7 0.39
ACGTcount: A:0.60, C:0.00, G:0.00, T:0.40
Consensus pattern (17 bp):
TAAATAATAATTTAAAT
Found at i:7002784 original size:13 final size:13
Alignment explanation
Indices: 7002766--7002799 Score: 59
Period size: 13 Copynumber: 2.6 Consensus size: 13
7002756 TTTATAAAAA
7002766 AATATTTATATTT
1 AATATTTATATTT
7002779 AATATTTATATTT
1 AATATTTATATTT
*
7002792 GATATTTA
1 AATATTTA
7002800 AACATAAATA
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
13 20 1.00
ACGTcount: A:0.38, C:0.00, G:0.03, T:0.59
Consensus pattern (13 bp):
AATATTTATATTT
Found at i:7007141 original size:27 final size:28
Alignment explanation
Indices: 7007079--7007141 Score: 64
Period size: 26 Copynumber: 2.3 Consensus size: 28
7007069 TTCAATCGCA
7007079 TAATCAAATAAAAAATAAACTTAAACTTC
1 TAATCAAATAAAAAATAAAC-TAAACTTC
7007108 T-AT-AAAT-AAAAATAAA-TAATACCTT-
1 TAATCAAATAAAAAATAAACTAA-A-CTTC
7007133 TAATCAAAT
1 TAATCAAAT
7007142 TAGCCTTATA
Statistics
Matches: 30, Mismatches: 0, Indels: 10
0.75 0.00 0.25
Matches are distributed among these distances:
24 3 0.10
25 2 0.07
26 14 0.47
27 8 0.27
28 2 0.07
29 1 0.03
ACGTcount: A:0.59, C:0.11, G:0.00, T:0.30
Consensus pattern (28 bp):
TAATCAAATAAAAAATAAACTAAACTTC
Found at i:7008164 original size:73 final size:79
Alignment explanation
Indices: 7008015--7008174 Score: 199
Period size: 73 Copynumber: 2.1 Consensus size: 79
7008005 TTATTTTTTA
*
7008015 AAATTTTAAATTTTTTATTTTTTAAAAAATCTAATAATTAATATTGTGATTTGTTAATACAAATT
1 AAATTTTAAATTTTTTATTTTTTAAAAAA-CTAATAATTAATATTGTGATTTGTCAATACAAATT
7008080 TTCTCAAATTTAATT
65 TTCTCAAATTTAATT
* * *
7008095 AAATTTT-ATTTTTTTATTTTATTAAAAAA-TAATAATTAATA-TGTTA-TT-TCAATACGAATT
1 AAATTTTAAATTTTTTATTTT-TTAAAAAACTAATAATTAATATTGTGATTTGTCAATACAAATT
*
7008155 TT-T-TAATTTAATT
65 TTCTCAAATTTAATT
*
7008168 AATTTTT
1 AAATTTT
7008175 TTAATTTTCT
Statistics
Matches: 73, Mismatches: 6, Indels: 9
0.83 0.07 0.10
Matches are distributed among these distances:
73 15 0.21
74 1 0.01
75 12 0.16
76 2 0.03
77 4 0.05
78 12 0.16
79 12 0.16
80 15 0.21
ACGTcount: A:0.39, C:0.04, G:0.03, T:0.54
Consensus pattern (79 bp):
AAATTTTAAATTTTTTATTTTTTAAAAAACTAATAATTAATATTGTGATTTGTCAATACAAATTT
TCTCAAATTTAATT
Found at i:7008309 original size:16 final size:15
Alignment explanation
Indices: 7008287--7008323 Score: 56
Period size: 16 Copynumber: 2.4 Consensus size: 15
7008277 ACTACATACA
*
7008287 TAAAAAAATATATTT
1 TAAAAAAACATATTT
7008302 TCAAAAAAACATATTT
1 T-AAAAAAACATATTT
7008318 TAAAAA
1 TAAAAA
7008324 TTAAAAAAAT
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
15 6 0.30
16 14 0.70
ACGTcount: A:0.62, C:0.05, G:0.00, T:0.32
Consensus pattern (15 bp):
TAAAAAAACATATTT
Found at i:7009363 original size:2 final size:2
Alignment explanation
Indices: 7009351--7009385 Score: 52
Period size: 2 Copynumber: 17.5 Consensus size: 2
7009341 GATCTATGTT
* *
7009351 TA TA AA TA TA TA TA GA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
7009386 TTATGGGATA
Statistics
Matches: 29, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
2 29 1.00
ACGTcount: A:0.51, C:0.00, G:0.03, T:0.46
Consensus pattern (2 bp):
TA
Found at i:7010647 original size:18 final size:18
Alignment explanation
Indices: 7010611--7010649 Score: 51
Period size: 18 Copynumber: 2.2 Consensus size: 18
7010601 TATCCAATAA
* *
7010611 AAATATTTTTATTTTTTT
1 AAATATTTTTATATATTT
*
7010629 AAATTTTTTTATATATTT
1 AAATATTTTTATATATTT
7010647 AAA
1 AAA
7010650 AGATCATATT
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.36, C:0.00, G:0.00, T:0.64
Consensus pattern (18 bp):
AAATATTTTTATATATTT
Found at i:7011287 original size:21 final size:20
Alignment explanation
Indices: 7011259--7011297 Score: 53
Period size: 21 Copynumber: 1.9 Consensus size: 20
7011249 ACAATAATAT
7011259 TTTAAAATAT-TATAAATAAA
1 TTTAAAAT-TGTATAAATAAA
7011279 TTTATAAATTGTATAAATA
1 TTTA-AAATTGTATAAATA
7011298 TTTTATGTAA
Statistics
Matches: 17, Mismatches: 0, Indels: 3
0.85 0.00 0.15
Matches are distributed among these distances:
20 5 0.29
21 12 0.71
ACGTcount: A:0.54, C:0.00, G:0.03, T:0.44
Consensus pattern (20 bp):
TTTAAAATTGTATAAATAAA
Found at i:7013897 original size:21 final size:22
Alignment explanation
Indices: 7013859--7013902 Score: 56
Period size: 21 Copynumber: 2.0 Consensus size: 22
7013849 TGAATTTTAT
*
7013859 TTTAAAAAATAATTAATT-AAA
1 TTTAAAAAATAATAAATTCAAA
7013880 TTTAAAATAATAA-AAATTCAAA
1 TTTAAAA-AATAATAAATTCAAA
7013902 T
1 T
7013903 AATATAAGTT
Statistics
Matches: 20, Mismatches: 1, Indels: 3
0.83 0.04 0.12
Matches are distributed among these distances:
21 11 0.55
22 9 0.45
ACGTcount: A:0.61, C:0.02, G:0.00, T:0.36
Consensus pattern (22 bp):
TTTAAAAAATAATAAATTCAAA
Found at i:7019646 original size:6 final size:6
Alignment explanation
Indices: 7019637--7019758 Score: 62
Period size: 6 Copynumber: 20.7 Consensus size: 6
7019627 ATTAGGTATG
* *
7019637 AAATTT AAATTT -TATTT AAATTT AAA-TT GAA-TT AAATTT AAA-TT
1 AAATTT AAATTT AAATTT AAATTT AAATTT AAATTT AAATTT AAATTT
* * * * * *
7019681 -AATTT AAAATTT TATTTT ATTATTT AAA-AT AATATTAT AAAATT AATTTT
1 AAATTT -AAATTT AAATTT A-AATTT AAATTT AA-ATT-T AAATTT AAATTT
7019731 AAA-TT AATATTT ATAA-TT AAATTT AAAT
1 AAATTT AA-ATTT A-AATTT AAATTT AAAT
7019759 AAAATAATTT
Statistics
Matches: 87, Mismatches: 16, Indels: 26
0.67 0.12 0.20
Matches are distributed among these distances:
4 2 0.02
5 25 0.29
6 41 0.47
7 15 0.17
8 4 0.05
ACGTcount: A:0.48, C:0.00, G:0.01, T:0.51
Consensus pattern (6 bp):
AAATTT
Found at i:7019655 original size:11 final size:11
Alignment explanation
Indices: 7019638--7019758 Score: 61
Period size: 11 Copynumber: 10.8 Consensus size: 11
7019628 TTAGGTATGA
7019638 AATTTAAATTT
1 AATTTAAATTT
*
7019649 TATTTAAATTT
1 AATTTAAATTT
* * *
7019660 AAATTGAATTA
1 AATTTAAATTT
7019671 AATTTAAA-TT
1 AATTTAAATTT
7019681 AATTTAAAATTT
1 AATTT-AAATTT
* *
7019693 TATTT-TA-TT
1 AATTTAAATTT
* *
7019702 -ATTTAAAATA
1 AATTTAAATTT
*
7019712 ATATTATAAAATT
1 A-ATT-TAAATTT
*
7019725 AATTTTAAATTA
1 AA-TTTAAATTT
*
7019737 ATATTTATAATTA
1 A-ATTTA-AATTT
7019750 AATTTAAAT
1 AATTTAAAT
7019759 AAAATAATTT
Statistics
Matches: 85, Mismatches: 15, Indels: 20
0.71 0.12 0.17
Matches are distributed among these distances:
8 4 0.05
9 3 0.04
10 8 0.09
11 29 0.34
12 25 0.29
13 16 0.19
ACGTcount: A:0.48, C:0.00, G:0.01, T:0.51
Consensus pattern (11 bp):
AATTTAAATTT
Found at i:7019687 original size:16 final size:16
Alignment explanation
Indices: 7019637--7019688 Score: 70
Period size: 16 Copynumber: 3.2 Consensus size: 16
7019627 ATTAGGTATG
*
7019637 AAATTTAAATTTTATTT
1 AAATTTAAA-TTAATTT
7019654 AAATTTAAATTGAA-TT
1 AAATTTAAATT-AATTT
7019670 AAATTTAAATTAATTT
1 AAATTTAAATTAATTT
7019686 AAA
1 AAA
7019689 ATTTTATTTT
Statistics
Matches: 32, Mismatches: 1, Indels: 5
0.84 0.03 0.13
Matches are distributed among these distances:
15 2 0.06
16 20 0.62
17 10 0.31
ACGTcount: A:0.50, C:0.00, G:0.02, T:0.48
Consensus pattern (16 bp):
AAATTTAAATTAATTT
Found at i:7019731 original size:25 final size:24
Alignment explanation
Indices: 7019702--7019757 Score: 76
Period size: 24 Copynumber: 2.3 Consensus size: 24
7019692 TTATTTTATT
7019702 ATTTAAAATAATATTATAAAATTAA
1 ATTTAAAATAATATT-TAAAATTAA
* * *
7019727 TTTTAAATTAATATTTATAATTAA
1 ATTTAAAATAATATTTAAAATTAA
7019751 ATTTAAA
1 ATTTAAA
7019758 TAAAATAATT
Statistics
Matches: 27, Mismatches: 4, Indels: 1
0.84 0.12 0.03
Matches are distributed among these distances:
24 14 0.52
25 13 0.48
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (24 bp):
ATTTAAAATAATATTTAAAATTAA
Found at i:7019764 original size:25 final size:26
Alignment explanation
Indices: 7019702--7019764 Score: 78
Period size: 25 Copynumber: 2.5 Consensus size: 26
7019692 TTATTTTATT
7019702 ATTTAAA-ATAATATTATAAAATTAA
1 ATTTAAATATAATATTATAAAATTAA
* *
7019727 TTTTAAAT-TAATATT-TATAATTAA
1 ATTTAAATATAATATTATAAAATTAA
*
7019751 ATTTAAATAAAATA
1 ATTTAAATATAATA
7019765 ATTTTTATTA
Statistics
Matches: 32, Mismatches: 4, Indels: 4
0.80 0.10 0.10
Matches are distributed among these distances:
24 15 0.47
25 17 0.53
ACGTcount: A:0.56, C:0.00, G:0.00, T:0.44
Consensus pattern (26 bp):
ATTTAAATATAATATTATAAAATTAA
Found at i:7026169 original size:35 final size:35
Alignment explanation
Indices: 7026130--7026205 Score: 109
Period size: 35 Copynumber: 2.2 Consensus size: 35
7026120 TAGGGTAAAA
*
7026130 TAAAAAGCTATAAATTATTTGACAAT-AAAATTATT
1 TAAAAAGCTATAAATT-TTTCACAATAAAAATTATT
*
7026165 TAAAAAGCTGTAAATTTTTCACAATAAAAATTATT
1 TAAAAAGCTATAAATTTTTCACAATAAAAATTATT
*
7026200 TGAAAA
1 TAAAAA
7026206 CTGAAAATAT
Statistics
Matches: 37, Mismatches: 3, Indels: 2
0.88 0.07 0.05
Matches are distributed among these distances:
34 8 0.22
35 29 0.78
ACGTcount: A:0.51, C:0.07, G:0.07, T:0.36
Consensus pattern (35 bp):
TAAAAAGCTATAAATTTTTCACAATAAAAATTATT
Found at i:7028441 original size:11 final size:11
Alignment explanation
Indices: 7028425--7028449 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
7028415 TAAATTATAA
7028425 TTTTTTTTCTT
1 TTTTTTTTCTT
7028436 TTTTTTTTCTT
1 TTTTTTTTCTT
7028447 TTT
1 TTT
7028450 CCCTTGAGAT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.00, C:0.08, G:0.00, T:0.92
Consensus pattern (11 bp):
TTTTTTTTCTT
Found at i:7029229 original size:25 final size:26
Alignment explanation
Indices: 7029188--7029245 Score: 82
Period size: 25 Copynumber: 2.3 Consensus size: 26
7029178 ATTAGAAATT
* *
7029188 AATTTTAAAAAATTAAATAAATAAGA
1 AATTTTAAAAAATTAAAAAAATAAAA
*
7029214 TATTTTAAAAAA-TAAAAAAATAAAA
1 AATTTTAAAAAATTAAAAAAATAAAA
7029239 AATTTTA
1 AATTTTA
7029246 TACCAATCAA
Statistics
Matches: 28, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
25 17 0.61
26 11 0.39
ACGTcount: A:0.66, C:0.00, G:0.02, T:0.33
Consensus pattern (26 bp):
AATTTTAAAAAATTAAAAAAATAAAA
Found at i:7029965 original size:11 final size:11
Alignment explanation
Indices: 7029929--7029965 Score: 51
Period size: 10 Copynumber: 3.5 Consensus size: 11
7029919 CTCATAGTAT
7029929 TATTTAAAATAA
1 TATTTAAAA-AA
7029941 TA-TTAAAAAA
1 TATTTAAAAAA
7029951 -ATTTAAAAAA
1 TATTTAAAAAA
7029961 TATTT
1 TATTT
7029966 TTATTAATAT
Statistics
Matches: 23, Mismatches: 0, Indels: 5
0.82 0.00 0.18
Matches are distributed among these distances:
9 1 0.04
10 10 0.43
11 10 0.43
12 2 0.09
ACGTcount: A:0.59, C:0.00, G:0.00, T:0.41
Consensus pattern (11 bp):
TATTTAAAAAA
Found at i:7034922 original size:30 final size:30
Alignment explanation
Indices: 7034876--7035009 Score: 144
Period size: 30 Copynumber: 4.4 Consensus size: 30
7034866 GAACTTGTGC
7034876 TTAAATAAACTTTTTAACTTTTAATTTATAT
1 TTAAATAAA-TTTTTAACTTTTAATTTATAT
*
7034907 TTAAATAAATTTTTAATTTTTAATTTATAT
1 TTAAATAAATTTTTAACTTTTAATTTATAT
* *
7034937 TTAAATAAATTTTAAACTTTTAACTTT-TAC
1 TTAAATAAATTTTTAACTTTTAA-TTTATAT
* ** * * * *
7034967 TAAAATAAGCTTCTAATTTTTAAATTATAA
1 TTAAATAAATTTTTAACTTTTAATTTATAT
*
7034997 GTAAATAAATTTT
1 TTAAATAAATTTT
7035010 ATCATAAATC
Statistics
Matches: 84, Mismatches: 17, Indels: 5
0.79 0.16 0.05
Matches are distributed among these distances:
29 2 0.02
30 70 0.83
31 12 0.14
ACGTcount: A:0.42, C:0.05, G:0.01, T:0.51
Consensus pattern (30 bp):
TTAAATAAATTTTTAACTTTTAATTTATAT
Found at i:7034959 original size:60 final size:60
Alignment explanation
Indices: 7034876--7035010 Score: 164
Period size: 60 Copynumber: 2.2 Consensus size: 60
7034866 GAACTTGTGC
* * * * * * *
7034876 TTAAATAAACTTTTTAACTTTTAA-TTTATATTTAAATAAATTTTTAATTTTTAATTTATAT
1 TTAAATAAA-TTTTAAACTTTTAACTTT-TACTAAAATAAACTTCTAATTTTTAAATTATAA
*
7034937 TTAAATAAATTTTAAACTTTTAACTTTTACTAAAATAAGCTTCTAATTTTTAAATTATAA
1 TTAAATAAATTTTAAACTTTTAACTTTTACTAAAATAAACTTCTAATTTTTAAATTATAA
*
7034997 GTAAATAAATTTTA
1 TTAAATAAATTTTA
7035011 TCATAAATCA
Statistics
Matches: 64, Mismatches: 9, Indels: 3
0.84 0.12 0.04
Matches are distributed among these distances:
60 52 0.81
61 12 0.19
ACGTcount: A:0.42, C:0.05, G:0.01, T:0.51
Consensus pattern (60 bp):
TTAAATAAATTTTAAACTTTTAACTTTTACTAAAATAAACTTCTAATTTTTAAATTATAA
Found at i:7035311 original size:2 final size:2
Alignment explanation
Indices: 7035304--7035340 Score: 74
Period size: 2 Copynumber: 18.5 Consensus size: 2
7035294 TTGATGAATT
7035304 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
7035341 TCTACAAATC
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 35 1.00
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (2 bp):
TA
Found at i:7035653 original size:3 final size:3
Alignment explanation
Indices: 7035645--7035688 Score: 88
Period size: 3 Copynumber: 14.7 Consensus size: 3
7035635 ACATATACAT
7035645 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA AT
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA AT
7035689 TGAAAAAAAG
Statistics
Matches: 41, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 41 1.00
ACGTcount: A:0.66, C:0.00, G:0.00, T:0.34
Consensus pattern (3 bp):
ATA
Found at i:7036346 original size:19 final size:19
Alignment explanation
Indices: 7036324--7036360 Score: 56
Period size: 19 Copynumber: 1.9 Consensus size: 19
7036314 AAAAGAAATG
*
7036324 TTTTTGAAAAAAACTTATT
1 TTTTTGAAAAAAAATTATT
*
7036343 TTTTTTAAAAAAAATTAT
1 TTTTTGAAAAAAAATTAT
7036361 ATGGCTTAAT
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 16 1.00
ACGTcount: A:0.46, C:0.03, G:0.03, T:0.49
Consensus pattern (19 bp):
TTTTTGAAAAAAAATTATT
Found at i:7037164 original size:29 final size:29
Alignment explanation
Indices: 7037125--7037193 Score: 93
Period size: 29 Copynumber: 2.4 Consensus size: 29
7037115 TATATATTAG
* *
7037125 AAATTTATTTAAATATTAATTAAAAATCA
1 AAATTTTTTTAAATATAAATTAAAAATCA
* * *
7037154 AGATTTTTTTAAATATAAATTATAAATTA
1 AAATTTTTTTAAATATAAATTAAAAATCA
7037183 AAATTTTTTTA
1 AAATTTTTTTA
7037194 TGTGTAATAA
Statistics
Matches: 34, Mismatches: 6, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
29 34 1.00
ACGTcount: A:0.49, C:0.01, G:0.01, T:0.48
Consensus pattern (29 bp):
AAATTTTTTTAAATATAAATTAAAAATCA
Found at i:7037867 original size:20 final size:18
Alignment explanation
Indices: 7037842--7037892 Score: 58
Period size: 14 Copynumber: 3.1 Consensus size: 18
7037832 AATATAAACA
7037842 TATATAAATATATTAAAAT
1 TATAT-AATATATTAAAAT
7037861 T-TAT-ATA-A-TAAAAT
1 TATATAATATATTAAAAT
7037875 TAT-TAATATATTAAAAT
1 TATATAATATATTAAAAT
7037892 T
1 T
7037893 TAAATAAATA
Statistics
Matches: 28, Mismatches: 0, Indels: 10
0.74 0.00 0.26
Matches are distributed among these distances:
14 8 0.29
15 5 0.18
16 4 0.14
17 7 0.25
18 3 0.11
19 1 0.04
ACGTcount: A:0.55, C:0.00, G:0.00, T:0.45
Consensus pattern (18 bp):
TATATAATATATTAAAAT
Found at i:7037889 original size:17 final size:16
Alignment explanation
Indices: 7037848--7037898 Score: 61
Period size: 17 Copynumber: 3.2 Consensus size: 16
7037838 AACATATATA
7037848 AATATATTAAAA-TTT
1 AATATATTAAAATTTT
*
7037863 -ATATAATAAAATTATT
1 AATATATTAAAATT-TT
*
7037879 AATATATTAAAATTTA
1 AATATATTAAAATTTT
7037895 AATA
1 AATA
7037899 AATATATAAA
Statistics
Matches: 30, Mismatches: 3, Indels: 5
0.79 0.08 0.13
Matches are distributed among these distances:
14 10 0.33
15 1 0.03
16 7 0.23
17 12 0.40
ACGTcount: A:0.57, C:0.00, G:0.00, T:0.43
Consensus pattern (16 bp):
AATATATTAAAATTTT
Found at i:7038594 original size:18 final size:21
Alignment explanation
Indices: 7038573--7038619 Score: 66
Period size: 18 Copynumber: 2.4 Consensus size: 21
7038563 AGAGAGAGGG
7038573 GGAAAGGGAGAG-AC-GG-AA
1 GGAAAGGGAGAGAACGGGCAA
7038591 GGAAA-GGAGAGAACGGGCAA
1 GGAAAGGGAGAGAACGGGCAA
7038611 GGAAAGGGA
1 GGAAAGGGA
7038620 AAAGAAAAGA
Statistics
Matches: 25, Mismatches: 0, Indels: 5
0.83 0.00 0.17
Matches are distributed among these distances:
17 6 0.24
18 7 0.28
19 2 0.08
20 7 0.28
21 3 0.12
ACGTcount: A:0.45, C:0.06, G:0.49, T:0.00
Consensus pattern (21 bp):
GGAAAGGGAGAGAACGGGCAA
Found at i:7038785 original size:26 final size:26
Alignment explanation
Indices: 7038750--7038833 Score: 74
Period size: 24 Copynumber: 3.4 Consensus size: 26
7038740 GTATTAATAA
*
7038750 TTTATTTTATCA-TATTTTTATA-TAT
1 TTTATTTTAT-ATTATATTTATATTAT
7038775 TTTATATTTATATTATATTTATATTA-
1 TTTAT-TTTATATTATATTTATATTAT
*
7038801 TTT-TTTTATATTACT-TTTA-ATTAA
1 TTTATTTTATATTA-TATTTATATTAT
7038825 TTT-TTTTAT
1 TTTATTTTAT
7038834 GTTGTATTCA
Statistics
Matches: 53, Mismatches: 1, Indels: 11
0.82 0.02 0.17
Matches are distributed among these distances:
23 4 0.08
24 22 0.42
25 8 0.15
26 17 0.32
27 2 0.04
ACGTcount: A:0.29, C:0.02, G:0.00, T:0.69
Consensus pattern (26 bp):
TTTATTTTATATTATATTTATATTAT
Found at i:7039609 original size:24 final size:25
Alignment explanation
Indices: 7039564--7039610 Score: 69
Period size: 24 Copynumber: 1.9 Consensus size: 25
7039554 AAATATTTAC
*
7039564 TTAATTTTAAATAATTATTATAAAT
1 TTAATTTTAAATAATTAATATAAAT
*
7039589 TTAATTTT-TATAATTAATATAA
1 TTAATTTTAAATAATTAATATAA
7039611 TATAATATAT
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
24 12 0.60
25 8 0.40
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (25 bp):
TTAATTTTAAATAATTAATATAAAT
Found at i:7040136 original size:2 final size:2
Alignment explanation
Indices: 7040129--7040158 Score: 60
Period size: 2 Copynumber: 15.0 Consensus size: 2
7040119 AGGATGTTGA
7040129 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
7040159 CTAAGTCGAA
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 28 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:7040899 original size:31 final size:31
Alignment explanation
Indices: 7040864--7040940 Score: 154
Period size: 31 Copynumber: 2.5 Consensus size: 31
7040854 AGCACTTGAC
7040864 ATTAAAACAACTCTTCTTTTTTTGATAATTA
1 ATTAAAACAACTCTTCTTTTTTTGATAATTA
7040895 ATTAAAACAACTCTTCTTTTTTTGATAATTA
1 ATTAAAACAACTCTTCTTTTTTTGATAATTA
7040926 ATTAAAACAACTCTT
1 ATTAAAACAACTCTT
7040941 AATGTCAAGC
Statistics
Matches: 46, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
31 46 1.00
ACGTcount: A:0.38, C:0.14, G:0.03, T:0.45
Consensus pattern (31 bp):
ATTAAAACAACTCTTCTTTTTTTGATAATTA
Found at i:7041410 original size:21 final size:20
Alignment explanation
Indices: 7041379--7041434 Score: 69
Period size: 21 Copynumber: 2.8 Consensus size: 20
7041369 TTGGTCCCTT
*
7041379 TAAAAAG-ATCAATCTCTCTA
1 TAAAAAGAATCAATCT-TATA
7041399 TAAAAAGAATCAATGCTTATA
1 TAAAAAGAATCAAT-CTTATA
*
7041420 TAAAAAGAATTAATC
1 TAAAAAGAATCAATC
7041435 CGTTTAAAAA
Statistics
Matches: 32, Mismatches: 2, Indels: 4
0.84 0.05 0.11
Matches are distributed among these distances:
20 8 0.25
21 22 0.69
22 2 0.06
ACGTcount: A:0.52, C:0.12, G:0.07, T:0.29
Consensus pattern (20 bp):
TAAAAAGAATCAATCTTATA
Found at i:7042474 original size:22 final size:19
Alignment explanation
Indices: 7042443--7042484 Score: 57
Period size: 21 Copynumber: 2.1 Consensus size: 19
7042433 TATTTTTATT
7042443 TAAATTTAATTATAAAATATA
1 TAAATTTAA-TATAAAA-ATA
7042464 TAAATATTAATATAAAAATA
1 TAAAT-TTAATATAAAAATA
7042484 T
1 T
7042485 TTTATTAATT
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
20 4 0.20
21 12 0.60
22 4 0.20
ACGTcount: A:0.60, C:0.00, G:0.00, T:0.40
Consensus pattern (19 bp):
TAAATTTAATATAAAAATA
Found at i:7043135 original size:20 final size:20
Alignment explanation
Indices: 7043112--7043159 Score: 60
Period size: 20 Copynumber: 2.4 Consensus size: 20
7043102 AATCATTGAT
*
7043112 TTAATTAAACAATTTAAATA
1 TTAAATAAACAATTTAAATA
* *
7043132 TTAAATAAATAATTTTAATA
1 TTAAATAAACAATTTAAATA
*
7043152 GTAAATAA
1 TTAAATAA
7043160 GAAACAAATA
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
20 24 1.00
ACGTcount: A:0.56, C:0.02, G:0.02, T:0.40
Consensus pattern (20 bp):
TTAAATAAACAATTTAAATA
Found at i:7045434 original size:27 final size:29
Alignment explanation
Indices: 7045404--7045460 Score: 75
Period size: 28 Copynumber: 2.0 Consensus size: 29
7045394 AATGAGAATA
*
7045404 TAAAATA-ATTATTAAA-AATATTA-ATTT
1 TAAAATATATTAATAAATAAT-TTATATTT
7045431 TAAAATATATTAATAAATAATTTATATTT
1 TAAAATATATTAATAAATAATTTATATTT
7045460 T
1 T
7045461 TAATAAAATT
Statistics
Matches: 26, Mismatches: 1, Indels: 4
0.84 0.03 0.13
Matches are distributed among these distances:
27 7 0.27
28 11 0.42
29 8 0.31
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (29 bp):
TAAAATATATTAATAAATAATTTATATTT
Found at i:7045440 original size:16 final size:16
Alignment explanation
Indices: 7045409--7045444 Score: 56
Period size: 16 Copynumber: 2.2 Consensus size: 16
7045399 GAATATAAAA
7045409 TAATTATTAAAAATAT
1 TAATTATTAAAAATAT
7045425 TAATT-TTAAAATATAT
1 TAATTATTAAAA-ATAT
7045441 TAAT
1 TAAT
7045445 AAATAATTTA
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
15 6 0.32
16 13 0.68
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (16 bp):
TAATTATTAAAAATAT
Found at i:7045495 original size:25 final size:25
Alignment explanation
Indices: 7045450--7045509 Score: 61
Period size: 25 Copynumber: 2.4 Consensus size: 25
7045440 TTAATAAATA
*
7045450 ATTTATATTTTTAATAAAATTTAA-T
1 ATTTAAATTTTTAATAAAA-TTAATT
*
7045475 ATTTAAATATTTTAAT-TAATTAATT
1 ATTTAAAT-TTTTAATAAAATTAATT
7045500 ATTATAAATT
1 ATT-TAAATT
7045510 ATATAAAAAT
Statistics
Matches: 30, Mismatches: 2, Indels: 6
0.79 0.05 0.16
Matches are distributed among these distances:
24 4 0.13
25 14 0.47
26 12 0.40
ACGTcount: A:0.45, C:0.00, G:0.00, T:0.55
Consensus pattern (25 bp):
ATTTAAATTTTTAATAAAATTAATT
Found at i:7046571 original size:15 final size:16
Alignment explanation
Indices: 7046543--7046581 Score: 60
Period size: 16 Copynumber: 2.4 Consensus size: 16
7046533 TATCATCATA
*
7046543 AAAAATTAAAAAAATTT
1 AAAAA-TAAAAAATTTT
7046560 AAAAATAAAAAATTTT
1 AAAAATAAAAAATTTT
7046576 AAAAAT
1 AAAAAT
7046582 TTCATGCTAA
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
16 16 0.76
17 5 0.24
ACGTcount: A:0.72, C:0.00, G:0.00, T:0.28
Consensus pattern (16 bp):
AAAAATAAAAAATTTT
Found at i:7046924 original size:20 final size:21
Alignment explanation
Indices: 7046874--7046940 Score: 52
Period size: 20 Copynumber: 3.3 Consensus size: 21
7046864 GAATAATTAA
*
7046874 AATATATATAATATAGCATTC
1 AATATATATAATATAACATTC
* * *
7046895 AA-ACACATAATTTAACATT-
1 AATATATATAATATAACATTC
*
7046914 AATATATATAACCATAA-A-TC
1 AATATATATAA-TATAACATTC
7046934 AATATAT
1 AATATAT
7046941 TATTTTTAAT
Statistics
Matches: 35, Mismatches: 8, Indels: 7
0.70 0.16 0.14
Matches are distributed among these distances:
19 3 0.09
20 27 0.77
21 5 0.14
ACGTcount: A:0.52, C:0.12, G:0.01, T:0.34
Consensus pattern (21 bp):
AATATATATAATATAACATTC
Found at i:7047230 original size:20 final size:21
Alignment explanation
Indices: 7047207--7047247 Score: 66
Period size: 20 Copynumber: 2.0 Consensus size: 21
7047197 AATTATTTTT
*
7047207 TATTTTTAAAA-ATGATTAAA
1 TATTTTTAAAATACGATTAAA
7047227 TATTTTTAAAATACGATTAAA
1 TATTTTTAAAATACGATTAAA
7047248 ATAACTCAAT
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
20 11 0.58
21 8 0.42
ACGTcount: A:0.49, C:0.02, G:0.05, T:0.44
Consensus pattern (21 bp):
TATTTTTAAAATACGATTAAA
Found at i:7050764 original size:14 final size:14
Alignment explanation
Indices: 7050737--7050785 Score: 50
Period size: 14 Copynumber: 3.7 Consensus size: 14
7050727 TTTTATCTTC
* *
7050737 ATTTAAAAAATTAT
1 ATTTAAATATTTAT
*
7050751 ATTTTAATATTTAT
1 ATTTAAATATTTAT
7050765 ATTTAAATA--TAT
1 ATTTAAATATTTAT
7050777 A-TTAAATAT
1 ATTTAAATAT
7050786 AAATATCAAT
Statistics
Matches: 30, Mismatches: 4, Indels: 4
0.79 0.11 0.11
Matches are distributed among these distances:
11 7 0.23
12 4 0.13
14 19 0.63
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (14 bp):
ATTTAAATATTTAT
Found at i:7055255 original size:46 final size:43
Alignment explanation
Indices: 7055176--7055296 Score: 110
Period size: 46 Copynumber: 2.9 Consensus size: 43
7055166 AATTTATTTG
* * *
7055176 AAAATTTTAATTATTAATTAA-AA---ATAATAAAATTAAAAT
1 AAAATTTTTATTATTAAATAATAATTTATAATTAAATTAAAAT
** *
7055215 ATTATTTTTA-TATTAATATTAATATATTTTATAATTAAATTTAAAT
1 AAAATTTTTATTATTAA-A-TAATA-A-TTTATAATTAAATTAAAAT
7055261 AAAATTTTTATTATTAAATAATAATTTA-AATTAAAT
1 AAAATTTTTATTATTAAATAATAATTTATAATTAAAT
7055297 CTATTTAAAT
Statistics
Matches: 65, Mismatches: 8, Indels: 15
0.74 0.09 0.17
Matches are distributed among these distances:
38 6 0.09
39 7 0.11
40 3 0.05
41 1 0.02
42 9 0.14
43 4 0.06
44 1 0.02
45 5 0.08
46 23 0.35
47 6 0.09
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (43 bp):
AAAATTTTTATTATTAAATAATAATTTATAATTAAATTAAAAT
Found at i:7055283 original size:22 final size:22
Alignment explanation
Indices: 7055218--7055284 Score: 57
Period size: 25 Copynumber: 3.0 Consensus size: 22
7055208 TTAAAATATT
* *
7055218 ATTTTTA-TATT-AATATTAAT
1 ATTTTTATTATTAAATAATAAA
*
7055238 ATATTTTATAATTAAATTTAAATAAA
1 AT-TTTTATTATTAAA--T-AATAAA
7055264 ATTTTTATTATTAAATAATAA
1 ATTTTTATTATTAAATAATAA
7055285 TTTAAATTAA
Statistics
Matches: 37, Mismatches: 4, Indels: 10
0.73 0.08 0.20
Matches are distributed among these distances:
20 2 0.05
21 5 0.14
22 8 0.22
23 3 0.08
25 13 0.35
26 6 0.16
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (22 bp):
ATTTTTATTATTAAATAATAAA
Found at i:7055293 original size:20 final size:19
Alignment explanation
Indices: 7055255--7055293 Score: 51
Period size: 20 Copynumber: 2.0 Consensus size: 19
7055245 ATAATTAAAT
**
7055255 TTAAATAAAATTTTTATTA
1 TTAAATAAAATTTAAATTA
7055274 TTAAATAATAATTTAAATTA
1 TTAAATAA-AATTTAAATTA
7055294 AATCTATTTA
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
19 8 0.47
20 9 0.53
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (19 bp):
TTAAATAAAATTTAAATTA
Found at i:7056732 original size:2 final size:2
Alignment explanation
Indices: 7056725--7056753 Score: 58
Period size: 2 Copynumber: 14.5 Consensus size: 2
7056715 ACTGAAGTCA
7056725 AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
7056754 ATAGTGAAAA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:7057854 original size:32 final size:31
Alignment explanation
Indices: 7057792--7057855 Score: 85
Period size: 32 Copynumber: 2.0 Consensus size: 31
7057782 AATTTTAAAT
*
7057792 ATAAAAATATAATATAAATATGATATATTTA
1 ATAAAAATATAATATAAATATCATATATTTA
*
7057823 ATAAAAATAATAA-ATATGATATCATATATTTA
1 ATAAAAAT-ATAATATA-AATATCATATATTTA
7057855 A
1 A
7057856 ATATGATTAA
Statistics
Matches: 29, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
31 11 0.38
32 18 0.62
ACGTcount: A:0.58, C:0.02, G:0.03, T:0.38
Consensus pattern (31 bp):
ATAAAAATATAATATAAATATCATATATTTA
Found at i:7057857 original size:27 final size:27
Alignment explanation
Indices: 7057805--7057884 Score: 72
Period size: 27 Copynumber: 2.9 Consensus size: 27
7057795 AAAATATAAT
* **
7057805 ATAAATATGATATATTTAATAAAAATA-
1 ATAAATATGATATATAT-ATTTAAATAG
7057832 ATAAATATGATATCATATATTTAAATATG
1 ATAAATATGATAT-ATATATTTAAATA-G
* * *
7057861 ATTAATATAATATTTATATTTAAA
1 ATAAATATGATATATATATTTAAA
7057885 ATTTTATTAT
Statistics
Matches: 44, Mismatches: 6, Indels: 5
0.80 0.11 0.09
Matches are distributed among these distances:
27 20 0.45
28 13 0.30
29 11 0.25
ACGTcount: A:0.53, C:0.01, G:0.04, T:0.42
Consensus pattern (27 bp):
ATAAATATGATATATATATTTAAATAG
Found at i:7057881 original size:6 final size:6
Alignment explanation
Indices: 7057870--7057926 Score: 57
Period size: 6 Copynumber: 9.5 Consensus size: 6
7057860 GATTAATATA
*
7057870 ATATTT ATATTT AAAATTT -TA-TT ATATTT AATAATTT AT-TTT ATATTT
1 ATATTT ATATTT -ATATTT ATATTT ATATTT -AT-ATTT ATATTT ATATTT
7057918 ATATTT ATA
1 ATATTT ATA
7057927 CGATTAATAT
Statistics
Matches: 43, Mismatches: 2, Indels: 12
0.75 0.04 0.21
Matches are distributed among these distances:
4 2 0.05
5 8 0.19
6 20 0.47
7 9 0.21
8 4 0.09
ACGTcount: A:0.39, C:0.00, G:0.00, T:0.61
Consensus pattern (6 bp):
ATATTT
Found at i:7057896 original size:17 final size:19
Alignment explanation
Indices: 7057874--7057926 Score: 69
Period size: 17 Copynumber: 3.0 Consensus size: 19
7057864 AATATAATAT
7057874 TTATATTTAA-AATTT-TA
1 TTATATTTAATAATTTATA
*
7057891 TTATATTTAATAATTTATT
1 TTATATTTAATAATTTATA
7057910 TTATATTT-AT-ATTTATA
1 TTATATTTAATAATTTATA
7057927 CGATTAATAT
Statistics
Matches: 32, Mismatches: 2, Indels: 4
0.84 0.05 0.11
Matches are distributed among these distances:
17 16 0.50
18 7 0.22
19 9 0.28
ACGTcount: A:0.38, C:0.00, G:0.00, T:0.62
Consensus pattern (19 bp):
TTATATTTAATAATTTATA
Found at i:7060725 original size:2 final size:2
Alignment explanation
Indices: 7060718--7060757 Score: 80
Period size: 2 Copynumber: 20.0 Consensus size: 2
7060708 AAAGGGAAAT
7060718 GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA
1 GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA
7060758 AGGCGTAGAG
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 38 1.00
ACGTcount: A:0.50, C:0.00, G:0.50, T:0.00
Consensus pattern (2 bp):
GA
Found at i:7060814 original size:2 final size:2
Alignment explanation
Indices: 7060809--7060871 Score: 81
Period size: 2 Copynumber: 31.5 Consensus size: 2
7060799 ATAGGGAAAA
* * * * *
7060809 AG AG AG AG AA AA AG AG AA AG AA AA AG AG AG AG AG AG AG AG AG
1 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG
7060851 AG AG AG AG AG AG AG AG AG AG A
1 AG AG AG AG AG AG AG AG AG AG A
7060872 AACGTGTGGA
Statistics
Matches: 55, Mismatches: 6, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
2 55 1.00
ACGTcount: A:0.59, C:0.00, G:0.41, T:0.00
Consensus pattern (2 bp):
AG
Found at i:7062051 original size:22 final size:19
Alignment explanation
Indices: 7062020--7062061 Score: 57
Period size: 21 Copynumber: 2.1 Consensus size: 19
7062010 TATATTTATT
7062020 TAAATTTAATTATAAAATATA
1 TAAATTTAA-TATAAAA-ATA
7062041 TAAATATTAATATAAAAATA
1 TAAAT-TTAATATAAAAATA
7062061 T
1 T
7062062 TTTTTAAATT
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
20 4 0.20
21 12 0.60
22 4 0.20
ACGTcount: A:0.60, C:0.00, G:0.00, T:0.40
Consensus pattern (19 bp):
TAAATTTAATATAAAAATA
Found at i:7063424 original size:2 final size:2
Alignment explanation
Indices: 7063417--7063447 Score: 62
Period size: 2 Copynumber: 15.5 Consensus size: 2
7063407 CACTTCCTTT
7063417 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
7063448 TAGAGCATCG
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 29 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:7063761 original size:34 final size:34
Alignment explanation
Indices: 7063718--7063935 Score: 265
Period size: 34 Copynumber: 6.4 Consensus size: 34
7063708 GGTTTGGTAA
*
7063718 AAACTACCAAATCACCCATTTAATCAACAATGAC
1 AAACTACCAAATCACCCATTTAATCAACAATGAT
*
7063752 AAACTACCAAATCACCCATTTAGTCAACAATGAT
1 AAACTACCAAATCACCCATTTAATCAACAATGAT
* * *
7063786 AAACCACCAAATCACCCATTTAATCAATAATGTT
1 AAACTACCAAATCACCCATTTAATCAACAATGAT
* * * *
7063820 AAACTAACAAATCTCCCATTTAGTCAACAATGGT
1 AAACTACCAAATCACCCATTTAATCAACAATGAT
* * **
7063854 AAACCACCAAATCACCAATTTAATCAACAATGGC
1 AAACTACCAAATCACCCATTTAATCAACAATGAT
* * * *
7063888 AAACTACCAAATCTCCCATTTAGTCAATAATGGT
1 AAACTACCAAATCACCCATTTAATCAACAATGAT
* *
7063922 AAACCAGCAAATCA
1 AAACTACCAAATCA
7063936 ATGGCAAACT
Statistics
Matches: 157, Mismatches: 27, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
34 157 1.00
ACGTcount: A:0.44, C:0.27, G:0.06, T:0.23
Consensus pattern (34 bp):
AAACTACCAAATCACCCATTTAATCAACAATGAT
Found at i:7063800 original size:68 final size:68
Alignment explanation
Indices: 7063718--7063935 Score: 337
Period size: 68 Copynumber: 3.2 Consensus size: 68
7063708 GGTTTGGTAA
* *
7063718 AAACTACCAAATCACCCATTTAATCAACAATGACAAACTACCAAATCACCCATTTAGTCAACAAT
1 AAACCACCAAATCACCCATTTAATCAACAATGACAAACTACCAAATCTCCCATTTAGTCAACAAT
*
7063783 GAT
66 GGT
* ** *
7063786 AAACCACCAAATCACCCATTTAATCAATAATGTTAAACTAACAAATCTCCCATTTAGTCAACAAT
1 AAACCACCAAATCACCCATTTAATCAACAATGACAAACTACCAAATCTCCCATTTAGTCAACAAT
7063851 GGT
66 GGT
* * *
7063854 AAACCACCAAATCACCAATTTAATCAACAATGGCAAACTACCAAATCTCCCATTTAGTCAATAAT
1 AAACCACCAAATCACCCATTTAATCAACAATGACAAACTACCAAATCTCCCATTTAGTCAACAAT
7063919 GGT
66 GGT
*
7063922 AAACCAGCAAATCA
1 AAACCACCAAATCA
7063936 ATGGCAAACT
Statistics
Matches: 136, Mismatches: 14, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
68 136 1.00
ACGTcount: A:0.44, C:0.27, G:0.06, T:0.23
Consensus pattern (68 bp):
AAACCACCAAATCACCCATTTAATCAACAATGACAAACTACCAAATCTCCCATTTAGTCAACAAT
GGT
Found at i:7063849 original size:102 final size:102
Alignment explanation
Indices: 7063718--7063935 Score: 292
Period size: 102 Copynumber: 2.1 Consensus size: 102
7063708 GGTTTGGTAA
* * * *
7063718 AAACTACCAAATCACCCATTTAATCAACAATGACAAACTACCAAATCACCCATTTAGTCAACAAT
1 AAACTAACAAATCACCCATTTAATCAACAATGACAAACCACCAAATCACCAATTTAATCAACAAT
* *
7063783 GATAAACCACCAAATCACCCATTTAATCAATAATGTT
66 GACAAACCACCAAATCACCCATTTAATCAATAATGGT
* * **
7063820 AAACTAACAAATCTCCCATTTAGTCAACAATGGTAAACCACCAAATCACCAATTTAATCAACAAT
1 AAACTAACAAATCACCCATTTAATCAACAATGACAAACCACCAAATCACCAATTTAATCAACAAT
* * * *
7063885 GGCAAACTACCAAATCTCCCATTTAGTCAATAATGGT
66 GACAAACCACCAAATCACCCATTTAATCAATAATGGT
* *
7063922 AAACCAGCAAATCA
1 AAACTAACAAATCA
7063936 ATGGCAAACT
Statistics
Matches: 99, Mismatches: 17, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
102 99 1.00
ACGTcount: A:0.44, C:0.27, G:0.06, T:0.23
Consensus pattern (102 bp):
AAACTAACAAATCACCCATTTAATCAACAATGACAAACCACCAAATCACCAATTTAATCAACAAT
GACAAACCACCAAATCACCCATTTAATCAATAATGGT
Found at i:7068042 original size:19 final size:19
Alignment explanation
Indices: 7068018--7068073 Score: 94
Period size: 19 Copynumber: 2.9 Consensus size: 19
7068008 TGCACAGTAC
*
7068018 TGTATATGTGAATAGTGCA
1 TGTATATGTAAATAGTGCA
*
7068037 TGTATATGTAAATAGTACA
1 TGTATATGTAAATAGTGCA
7068056 TGTATATGTAAATAGTGC
1 TGTATATGTAAATAGTGC
7068074 CTCGACAACC
Statistics
Matches: 34, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
19 34 1.00
ACGTcount: A:0.36, C:0.05, G:0.21, T:0.38
Consensus pattern (19 bp):
TGTATATGTAAATAGTGCA
Found at i:7068416 original size:34 final size:34
Alignment explanation
Indices: 7068371--7068589 Score: 160
Period size: 34 Copynumber: 6.5 Consensus size: 34
7068361 GGTTTGGTAA
*
7068371 AAACCACCAAATCAATCATTTAATCAACAATGAC
1 AAACCAACAAATCAATCATTTAATCAACAATGAC
* *** * *
7068405 AAACTAACAAATCTCCCATTTAGTCAACAATGGC
1 AAACCAACAAATCAATCATTTAATCAACAATGAC
* *
7068439 AAACCATCAAAT-AACTCATTTAATCAACAATGGC
1 AAACCAACAAATCAA-TCATTTAATCAACAATGAC
** * * *
7068473 AAATTAACAAATC--TCCATTTAGTCAATAATGAT
1 AAACCAACAAATCAAT-CATTTAATCAACAATGAC
* *
7068506 AAACCATCAAATC-ATCCATTTAATCAACAATGAT
1 AAACCAACAAATCAAT-CATTTAATCAACAATGAC
* ** * * *
7068540 AAA-TAATCAAATCTCTCATTTAGTCAATAATAAC
1 AAACCAA-CAAATCAATCATTTAATCAACAATGAC
*
7068574 AAACCATCAAATCAAT
1 AAACCAACAAATCAAT
7068590 GACAAACTAA
Statistics
Matches: 142, Mismatches: 36, Indels: 14
0.74 0.19 0.07
Matches are distributed among these distances:
32 1 0.01
33 25 0.18
34 114 0.80
35 2 0.01
ACGTcount: A:0.47, C:0.22, G:0.05, T:0.26
Consensus pattern (34 bp):
AAACCAACAAATCAATCATTTAATCAACAATGAC
Found at i:7068443 original size:68 final size:67
Alignment explanation
Indices: 7068371--7068589 Score: 300
Period size: 68 Copynumber: 3.2 Consensus size: 67
7068361 GGTTTGGTAA
* *
7068371 AAACCACCAAATCAATCATTTAATCAACAATGACAAACTAACAAATCTCCCATTTAGTCAACAAT
1 AAACCATCAAATCAATCATTTAATCAACAATGACAAA-TAACAAATCTCCCATTTAGTCAATAAT
*
7068436 GGC
65 GAC
*
7068439 AAACCATCAAAT-AACTCATTTAATCAACAATGGCAAATTAACAAATCT-CCATTTAGTCAATAA
1 AAACCATCAAATCAA-TCATTTAATCAACAATGACAAA-TAACAAATCTCCCATTTAGTCAATAA
*
7068502 TGAT
64 TGAC
* *
7068506 AAACCATCAAATC-ATCCATTTAATCAACAATGATAAATAATCAAATCTCTCATTTAGTCAATAA
1 AAACCATCAAATCAAT-CATTTAATCAACAATGACAAATAA-CAAATCTCCCATTTAGTCAATAA
*
7068570 TAAC
64 TGAC
7068574 AAACCATCAAATCAAT
1 AAACCATCAAATCAAT
7068590 GACAAACTAA
Statistics
Matches: 134, Mismatches: 11, Indels: 11
0.86 0.07 0.07
Matches are distributed among these distances:
66 4 0.03
67 57 0.43
68 71 0.53
69 2 0.01
ACGTcount: A:0.47, C:0.22, G:0.05, T:0.26
Consensus pattern (67 bp):
AAACCATCAAATCAATCATTTAATCAACAATGACAAATAACAAATCTCCCATTTAGTCAATAATG
AC
Found at i:7068739 original size:2 final size:2
Alignment explanation
Indices: 7068732--7068767 Score: 65
Period size: 2 Copynumber: 18.5 Consensus size: 2
7068722 ATAAATTTAG
7068732 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT -T AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
7068768 GAATCTGCCT
Statistics
Matches: 33, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
1 1 0.03
2 32 0.97
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:7069252 original size:26 final size:24
Alignment explanation
Indices: 7069192--7069262 Score: 99
Period size: 26 Copynumber: 2.9 Consensus size: 24
7069182 ATATAATTAC
7069192 ATAATATAAATATAATATAAAAAA
1 ATAATATAAATATAATATAAAAAA
*
7069216 ATAAT-TAAAATTTAATATGATAAAAA
1 ATAATAT-AAATATAATAT-A-AAAAA
7069242 ATAATATAAATATAATATAAA
1 ATAATATAAATATAATATAAA
7069263 TATATAAATG
Statistics
Matches: 41, Mismatches: 2, Indels: 8
0.80 0.04 0.16
Matches are distributed among these distances:
23 1 0.02
24 17 0.41
25 2 0.05
26 20 0.49
27 1 0.02
ACGTcount: A:0.66, C:0.00, G:0.01, T:0.32
Consensus pattern (24 bp):
ATAATATAAATATAATATAAAAAA
Found at i:7069288 original size:30 final size:31
Alignment explanation
Indices: 7069251--7069326 Score: 93
Period size: 29 Copynumber: 2.5 Consensus size: 31
7069241 AATAATATAA
*
7069251 ATATAATATAAATATATAAATGTATTAAAAT
1 ATATAATATAAATATATAAATATATTAAAAT
* *
7069282 -TATAATATTAAT-TATTAATATATTAAAAT
1 ATATAATATAAATATATAAATATATTAAAAT
7069311 ATATAAATATATAATA
1 ATAT-AATATA-AATA
7069327 CATTAAAAAT
Statistics
Matches: 37, Mismatches: 4, Indels: 6
0.79 0.09 0.13
Matches are distributed among these distances:
29 15 0.41
30 14 0.38
31 5 0.14
32 3 0.08
ACGTcount: A:0.57, C:0.00, G:0.01, T:0.42
Consensus pattern (31 bp):
ATATAATATAAATATATAAATATATTAAAAT
Found at i:7069353 original size:20 final size:20
Alignment explanation
Indices: 7069290--7069355 Score: 60
Period size: 20 Copynumber: 3.0 Consensus size: 20
7069280 ATTATAATAT
7069290 TAATTATTAATATATTAAAATATA
1 TAATTATT-ATATATT-AAA-A-A
* *
7069314 TAAATATATAATACATTAAAAA
1 T-AAT-TATTATATATTAAAAA
7069336 TAATTATTATATATTAAAAA
1 TAATTATTATATATTAAAAA
7069356 ATATAAATAT
Statistics
Matches: 36, Mismatches: 4, Indels: 8
0.75 0.08 0.17
Matches are distributed among these distances:
20 14 0.39
21 3 0.08
22 2 0.06
23 1 0.03
24 4 0.11
25 9 0.25
26 3 0.08
ACGTcount: A:0.58, C:0.02, G:0.00, T:0.41
Consensus pattern (20 bp):
TAATTATTATATATTAAAAA
Found at i:7069357 original size:47 final size:47
Alignment explanation
Indices: 7069241--7069366 Score: 145
Period size: 45 Copynumber: 2.7 Consensus size: 47
7069231 TATGATAAAA
* * *
7069241 AATAA-TATAAATATAATATAAATATATAAATGTATTAAAATTATAAT
1 AATAATTATTAATATATTA-AAATATATAAATATATTAAAATTATAAT
*
7069288 ATTAATTATTAATATATTAAAATATATAAATATA-TAATACATTA-AA-
1 AATAATTATTAATATATTAAAATATATAAATATATTAA-A-ATTATAAT
*
7069334 AATAATTATT-ATATATTAAAAAATATAAATATA
1 AATAATTATTAATATATTAAAATATATAAATATA
7069367 ATATACGTAA
Statistics
Matches: 70, Mismatches: 6, Indels: 8
0.83 0.07 0.10
Matches are distributed among these distances:
45 22 0.31
46 12 0.17
47 21 0.30
48 15 0.21
ACGTcount: A:0.59, C:0.01, G:0.01, T:0.40
Consensus pattern (47 bp):
AATAATTATTAATATATTAAAATATATAAATATATTAAAATTATAAT
Found at i:7069366 original size:20 final size:20
Alignment explanation
Indices: 7069299--7069366 Score: 57
Period size: 20 Copynumber: 3.1 Consensus size: 20
7069289 TTAATTATTA
*
7069299 ATATATTAAAATATATAAAT
1 ATATATTAAAAAATATAAAT
*
7069319 ATATAATACATTAAAA-ATAATTATT
1 ATATATTA-A--AAAATATAA--A-T
7069344 ATATATTAAAAAATATAAAT
1 ATATATTAAAAAATATAAAT
7069364 ATA
1 ATA
7069367 ATATACGTAA
Statistics
Matches: 38, Mismatches: 3, Indels: 14
0.69 0.05 0.25
Matches are distributed among these distances:
20 11 0.29
21 2 0.05
22 8 0.21
23 7 0.18
24 2 0.05
25 8 0.21
ACGTcount: A:0.60, C:0.01, G:0.00, T:0.38
Consensus pattern (20 bp):
ATATATTAAAAAATATAAAT
Found at i:7069371 original size:11 final size:11
Alignment explanation
Indices: 7069192--7069266 Score: 70
Period size: 11 Copynumber: 7.3 Consensus size: 11
7069182 ATATAATTAC
7069192 ATAATATAAAT
1 ATAATATAAAT
7069203 ATAATATAAA-
1 ATAATATAAAT
*
7069213 A-AA-ATAATT
1 ATAATATAAAT
* *
7069222 AAAAT-TTAAT
1 ATAATATAAAT
* *
7069232 ATGATA-AAAA
1 ATAATATAAAT
7069242 ATAATATAAAT
1 ATAATATAAAT
7069253 ATAATATAAAT
1 ATAATATAAAT
7069264 ATA
1 ATA
7069267 TAAATGTATT
Statistics
Matches: 50, Mismatches: 9, Indels: 10
0.72 0.13 0.14
Matches are distributed among these distances:
8 4 0.08
9 3 0.06
10 16 0.32
11 27 0.54
ACGTcount: A:0.65, C:0.00, G:0.01, T:0.33
Consensus pattern (11 bp):
ATAATATAAAT
Found at i:7071344 original size:30 final size:29
Alignment explanation
Indices: 7071284--7071344 Score: 70
Period size: 30 Copynumber: 2.1 Consensus size: 29
7071274 TAAATTTATC
**
7071284 TAAAATATAAAATGTTATTTATAAAATAA
1 TAAAATATAAAAAATTATTTATAAAATAA
*
7071313 TAAAATATTAAAAAATTAATTT-TAAATTAA
1 TAAAATA-TAAAAAATT-ATTTATAAAATAA
7071343 TA
1 TA
7071345 TTTATATATT
Statistics
Matches: 27, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
29 7 0.26
30 16 0.59
31 4 0.15
ACGTcount: A:0.59, C:0.00, G:0.02, T:0.39
Consensus pattern (29 bp):
TAAAATATAAAAAATTATTTATAAAATAA
Found at i:7072936 original size:2 final size:2
Alignment explanation
Indices: 7072929--7072965 Score: 74
Period size: 2 Copynumber: 18.5 Consensus size: 2
7072919 AAGATTTGAA
7072929 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
7072966 AGCTGATGGA
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 35 1.00
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (2 bp):
AT
Found at i:7073311 original size:29 final size:30
Alignment explanation
Indices: 7073261--7073320 Score: 79
Period size: 29 Copynumber: 2.0 Consensus size: 30
7073251 ATTTTTTTTA
*
7073261 TTTTTTTCAAATTATTAGTAATATCTATATT
1 TTTTTTTCAAATTA-TAGTAATATCAATATT
7073292 TTTTTTTCAAATCTA-A-TAATATCAATATT
1 TTTTTTTCAAAT-TATAGTAATATCAATATT
7073321 GCATATTTAT
Statistics
Matches: 27, Mismatches: 1, Indels: 4
0.84 0.03 0.12
Matches are distributed among these distances:
29 12 0.44
30 1 0.04
31 12 0.44
32 2 0.07
ACGTcount: A:0.35, C:0.08, G:0.02, T:0.55
Consensus pattern (30 bp):
TTTTTTTCAAATTATAGTAATATCAATATT
Found at i:7073375 original size:16 final size:16
Alignment explanation
Indices: 7073350--7073384 Score: 52
Period size: 16 Copynumber: 2.2 Consensus size: 16
7073340 ATTTATTTTA
* *
7073350 TTTCTTCTATTATTAT
1 TTTCTACTATAATTAT
7073366 TTTCTACTATAATTAT
1 TTTCTACTATAATTAT
7073382 TTT
1 TTT
7073385 TATTTCATCA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.23, C:0.11, G:0.00, T:0.66
Consensus pattern (16 bp):
TTTCTACTATAATTAT
Found at i:7073593 original size:11 final size:11
Alignment explanation
Indices: 7073577--7073601 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
7073567 TATTGAGAAA
7073577 GTAAAGTCCAC
1 GTAAAGTCCAC
7073588 GTAAAGTCCAC
1 GTAAAGTCCAC
7073599 GTA
1 GTA
7073602 TGTATATTAT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.36, C:0.24, G:0.20, T:0.20
Consensus pattern (11 bp):
GTAAAGTCCAC
Found at i:7073706 original size:20 final size:19
Alignment explanation
Indices: 7073681--7073734 Score: 67
Period size: 18 Copynumber: 2.9 Consensus size: 19
7073671 TAAACATATT
7073681 TTTATTATAATATTTTTATA
1 TTTATTATAATATTTTT-TA
*
7073701 TTTATTA-AATATGTTTTA
1 TTTATTATAATATTTTTTA
*
7073719 TTTA-TATTATATTTTT
1 TTTATTATAATATTTTT
7073735 CTAAAATTAT
Statistics
Matches: 30, Mismatches: 3, Indels: 4
0.81 0.08 0.11
Matches are distributed among these distances:
17 2 0.07
18 13 0.43
19 8 0.27
20 7 0.23
ACGTcount: A:0.31, C:0.00, G:0.02, T:0.67
Consensus pattern (19 bp):
TTTATTATAATATTTTTTA
Found at i:7075642 original size:22 final size:22
Alignment explanation
Indices: 7075616--7075657 Score: 68
Period size: 22 Copynumber: 1.9 Consensus size: 22
7075606 TAGTTTTATT
7075616 TAAAT-TTAATTATAAAAATATA
1 TAAATATTAA-TATAAAAATATA
7075638 TAAATATTAATATAAAAATA
1 TAAATATTAATATAAAAATA
7075658 ATATTTTTAT
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
22 15 0.79
23 4 0.21
ACGTcount: A:0.62, C:0.00, G:0.00, T:0.38
Consensus pattern (22 bp):
TAAATATTAATATAAAAATATA
Found at i:7075647 original size:29 final size:30
Alignment explanation
Indices: 7075581--7075647 Score: 68
Period size: 28 Copynumber: 2.3 Consensus size: 30
7075571 TAGCTTGATT
* *
7075581 AATATTATTATTTAATTAATAAAAATAGTTT
1 AATATTA-AATTTAATTAATAAAAATAGTTA
*
7075612 TAT-TTAAATTTAATT-ATAAAAATA-TATA
1 AATATTAAATTTAATTAATAAAAATAGT-TA
7075640 AATATTAA
1 AATATTAA
7075648 TATAAAAATA
Statistics
Matches: 30, Mismatches: 4, Indels: 6
0.75 0.10 0.15
Matches are distributed among these distances:
27 1 0.03
28 12 0.40
29 12 0.40
30 3 0.10
31 2 0.07
ACGTcount: A:0.52, C:0.00, G:0.01, T:0.46
Consensus pattern (30 bp):
AATATTAAATTTAATTAATAAAAATAGTTA
Found at i:7079772 original size:23 final size:22
Alignment explanation
Indices: 7079740--7079790 Score: 61
Period size: 23 Copynumber: 2.4 Consensus size: 22
7079730 TTACTTAAAA
* *
7079740 AATA-TTATATTATTTTTATATT
1 AATATTTATATAATTTATA-ATT
7079762 AATATTTATATAATTTATAATT
1 AATATTTATATAATTTATAATT
7079784 AA-ATTTA
1 AATATTTA
7079791 AATATCAAAC
Statistics
Matches: 26, Mismatches: 2, Indels: 3
0.84 0.06 0.10
Matches are distributed among these distances:
21 5 0.19
22 9 0.35
23 12 0.46
ACGTcount: A:0.43, C:0.00, G:0.00, T:0.57
Consensus pattern (22 bp):
AATATTTATATAATTTATAATT
Found at i:7080882 original size:2 final size:2
Alignment explanation
Indices: 7080877--7080913 Score: 74
Period size: 2 Copynumber: 18.5 Consensus size: 2
7080867 TGTGTGTGTG
7080877 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
7080914 TCTAATTGCT
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 35 1.00
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (2 bp):
TA
Found at i:7084224 original size:18 final size:18
Alignment explanation
Indices: 7084201--7084254 Score: 99
Period size: 18 Copynumber: 3.0 Consensus size: 18
7084191 TCAGATGTGA
*
7084201 GTTTCAAATAGGATATGT
1 GTTTCAAATAGGGTATGT
7084219 GTTTCAAATAGGGTATGT
1 GTTTCAAATAGGGTATGT
7084237 GTTTCAAATAGGGTATGT
1 GTTTCAAATAGGGTATGT
7084255 TCAGTTTTTA
Statistics
Matches: 35, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
18 35 1.00
ACGTcount: A:0.30, C:0.06, G:0.26, T:0.39
Consensus pattern (18 bp):
GTTTCAAATAGGGTATGT
Found at i:7085986 original size:21 final size:21
Alignment explanation
Indices: 7085956--7086009 Score: 81
Period size: 21 Copynumber: 2.6 Consensus size: 21
7085946 TCTAGGGAAA
*
7085956 TGCTTAGGATTTTTTTCTCAT
1 TGCTTAGGATTTTTTTCCCAT
*
7085977 TGCTTGGGATTTTTTTCCCAT
1 TGCTTAGGATTTTTTTCCCAT
*
7085998 TGCTTATGATTT
1 TGCTTAGGATTT
7086010 GGCTTCCACT
Statistics
Matches: 29, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
21 29 1.00
ACGTcount: A:0.13, C:0.15, G:0.17, T:0.56
Consensus pattern (21 bp):
TGCTTAGGATTTTTTTCCCAT
Found at i:7088098 original size:48 final size:49
Alignment explanation
Indices: 7088046--7088211 Score: 277
Period size: 48 Copynumber: 3.5 Consensus size: 49
7088036 GGGAAAGGAA
* *
7088046 GTGGATTT-GGAAAGGGTGTTGGAATTAGTAAAGGAGGAGGCTTTGGTG
1 GTGGATTTGGGAAAGGGTGGTGGGATTAGTAAAGGAGGAGGCTTTGGTG
*
7088094 GTGGATTT-GGAAAAGGTGGTGGGATTAGTAAAGGAGGAGGCTTTGGTG
1 GTGGATTTGGGAAAGGGTGGTGGGATTAGTAAAGGAGGAGGCTTTGGTG
7088142 GTGGATTTGGGAAA-GGTGGTGGGATTAGTAAAGGAGGAGGCTTTGGTG
1 GTGGATTTGGGAAAGGGTGGTGGGATTAGTAAAGGAGGAGGCTTTGGTG
7088190 GTGGATTTGGGAAA-GGTGGTGG
1 GTGGATTTGGGAAAGGGTGGTGG
7088212 ACATGGAGGT
Statistics
Matches: 114, Mismatches: 3, Indels: 2
0.96 0.03 0.02
Matches are distributed among these distances:
48 109 0.96
49 5 0.04
ACGTcount: A:0.23, C:0.02, G:0.47, T:0.28
Consensus pattern (49 bp):
GTGGATTTGGGAAAGGGTGGTGGGATTAGTAAAGGAGGAGGCTTTGGTG
Found at i:7088247 original size:18 final size:18
Alignment explanation
Indices: 7088219--7088276 Score: 62
Period size: 18 Copynumber: 3.2 Consensus size: 18
7088209 TGGACATGGA
*
7088219 GGTGGCATTGGCAAAGGT
1 GGTGGAATTGGCAAAGGT
** *
7088237 GGTGGGTTTGGCAAAGGG
1 GGTGGAATTGGCAAAGGT
* *
7088255 GGAGGAATTGGAAAAGGT
1 GGTGGAATTGGCAAAGGT
7088273 GGTG
1 GGTG
7088277 AAGGTGAAGG
Statistics
Matches: 31, Mismatches: 9, Indels: 0
0.77 0.22 0.00
Matches are distributed among these distances:
18 31 1.00
ACGTcount: A:0.24, C:0.05, G:0.50, T:0.21
Consensus pattern (18 bp):
GGTGGAATTGGCAAAGGT
Found at i:7088271 original size:66 final size:65
Alignment explanation
Indices: 7088196--7088415 Score: 152
Period size: 69 Copynumber: 3.2 Consensus size: 65
7088186 GGTGGTGGAT
*
7088196 TTGGGAAAGGTGGTGGACATGGAGGTGGCATTGGCAAAGGTGGTGGGTTTGGCAAAGGGGGAGGA
1 TTGGAAAAGGTGGTGGACATGGAGGTGGCATTGGCAAAGGTGGT-GGTTTGGCAAAGGGGGAGGA
7088261 A
65 A
** * * * ****** *** *
7088262 TTGGAAAAGGTGGTGAAGGTGAAGGAGGTGCCAGTGGTGGTTTTGGTGGAAGGGCAAGTGGAGGT
1 TTGGAAAAGGTGGT---GGACATGGAGGTGGCATTGGCAAAGGTGGTGGTTTGGCAA----AGGG
*
7088327 GGTGGAA
59 GGAGGAA
* * *
7088334 TTGGGAAGGGTGGTGGACATGGAGGTGGCATTGGCAAAGGTGGTTGGTTTGGTAAAGGGGGAGGA
1 TTGGAAAAGGTGGTGGACATGGAGGTGGCATTGGCAAAGGTGG-TGGTTTGGCAAAGGGGGAGGA
7088399 A
65 A
* * *
7088400 CTGGAAAGGGAGGTGG
1 TTGGAAAAGGTGGTGG
7088416 GATTTCAAAA
Statistics
Matches: 107, Mismatches: 39, Indels: 16
0.66 0.24 0.10
Matches are distributed among these distances:
66 35 0.33
68 7 0.07
69 37 0.35
70 7 0.07
72 21 0.20
ACGTcount: A:0.24, C:0.05, G:0.50, T:0.21
Consensus pattern (65 bp):
TTGGAAAAGGTGGTGGACATGGAGGTGGCATTGGCAAAGGTGGTGGTTTGGCAAAGGGGGAGGAA
Found at i:7088271 original size:96 final size:96
Alignment explanation
Indices: 7088046--7088263 Score: 237
Period size: 96 Copynumber: 2.3 Consensus size: 96
7088036 GGGAAAGGAA
**
7088046 GTGGATTTGG-AAAGGGTGTTGGAATTAGTAAAGGAGGAGGCTTTGGTGGTGGATTTGGAAAAGG
1 GTGGATTTGGCAAAGGG-GGAGGAATTAGTAAAGGAGGAGGCTTTGGTGGTGGATTTGGAAAAGG
* ***
7088110 TGGTGGGATTAGTAAAGGAGGAGGCTTTGGTG
65 TGGTGGGATCAGTAAAGGAGGAGGCAAAGGTG
* * * * *
7088142 GTGGATTTGGGAAAGGTGGTGGGATTAGTAAAGGAGGAGGCTTTGGTGGTGGATTTGGGAAAGGT
1 GTGGATTTGGCAAAGGGGGAGGAATTAGTAAAGGAGGAGGCTTTGGTGGTGGATTTGGAAAAGGT
** *
7088207 GGT-GGA-CA-TGGAGGTGGCATTGGCAAAGGTG
66 GGTGGGATCAGTAAAGGAGG-A--GGCAAAGGTG
*
7088238 GTGGGTTTGGCAAAGGGGGAGGAATT
1 GTGGATTTGGCAAAGGGGGAGGAATT
7088264 GGAAAAGGTG
Statistics
Matches: 102, Mismatches: 16, Indels: 8
0.81 0.13 0.06
Matches are distributed among these distances:
93 6 0.06
94 2 0.02
95 3 0.03
96 86 0.84
97 5 0.05
ACGTcount: A:0.24, C:0.03, G:0.47, T:0.26
Consensus pattern (96 bp):
GTGGATTTGGCAAAGGGGGAGGAATTAGTAAAGGAGGAGGCTTTGGTGGTGGATTTGGAAAAGGT
GGTGGGATCAGTAAAGGAGGAGGCAAAGGTG
Found at i:7088346 original size:138 final size:139
Alignment explanation
Indices: 7088186--7088564 Score: 474
Period size: 150 Copynumber: 2.7 Consensus size: 139
7088176 AGGAGGCTTT
* * *
7088186 GGTGGTGGATTTGGGAAAGGTGGTGGACATGGAGGTGGCATTGGCAAAGGTGGTGGGTTTGGCAA
1 GGTGGTGGAATTGGGAAGGGTGGTGGACATGGAGGTGGCATTGGCAAAGGTGGTAGGTTTGGCAA
7088251 AGGGGGAGGAATTGGAAAAGGTGGTGAAGGTGAAGGAGGT-GCCAGTGGTGGTTTTGGTGGAAGG
66 AGGGGGAGGAATTGGAAAAGGTGGTGAAGGTGAAGGAGGTGGCCAGTGGTGGTTTTGGTGGAAGG
7088315 GC-AAGTGGA
131 GCTAA-TGGA
* *
7088324 GGTGGTGGAATTGGGAAGGGTGGTGGACATGGAGGTGGCATTGGCAAAGGTGGTTGGTTTGGTAA
1 GGTGGTGGAATTGGGAAGGGTGGTGGACATGGAGGTGGCATTGGCAAAGGTGGTAGGTTTGGCAA
* * ** **
7088389 AGGGGGAGGAACTGGAAAGGGAGGTGGGATTTCAAAAGGTGGTGGAGGTGGAGCTGGTGGTGGTT
66 AGGGGGAGGAATTGGAAA---AGGT-GG---T--GAAGGTGAAGGAGGT-G-GCCAGTGGTGGTT
*
7088454 TTGGTGGAGGGGCTAATGGA
120 TTGGTGGAAGGGCTAATGGA
**
7088474 GGTGGTGGAATTGGGAAGGGTGGTGGACATGGAGGTGGCATCAGCAAAGGTGGTAGGTTTGGCAA
1 GGTGGTGGAATTGGGAAGGGTGGTGGACATGGAGGTGGCATTGGCAAAGGTGGTAGGTTTGGCAA
* * * *
7088539 AGGAGGTGGAATTGGAAGAGGAGGTG
66 AGGGGGAGGAATTGGAAAAGGTGGTG
7088565 GGATTGCAAA
Statistics
Matches: 207, Mismatches: 21, Indels: 23
0.82 0.08 0.09
Matches are distributed among these distances:
138 78 0.38
141 4 0.02
142 2 0.01
143 1 0.00
145 1 0.00
146 2 0.01
147 15 0.07
150 102 0.49
151 2 0.01
ACGTcount: A:0.23, C:0.05, G:0.50, T:0.22
Consensus pattern (139 bp):
GGTGGTGGAATTGGGAAGGGTGGTGGACATGGAGGTGGCATTGGCAAAGGTGGTAGGTTTGGCAA
AGGGGGAGGAATTGGAAAAGGTGGTGAAGGTGAAGGAGGTGGCCAGTGGTGGTTTTGGTGGAAGG
GCTAATGGA
Found at i:7088553 original size:18 final size:18
Alignment explanation
Indices: 7088532--7088584 Score: 56
Period size: 18 Copynumber: 2.9 Consensus size: 18
7088522 GGTGGTAGGT
7088532 TTGGCAAAGGAGGTGGAA
1 TTGGCAAAGGAGGTGGAA
*
7088550 TTGG-AAGAGGAGGTGGGA
1 TTGGCAA-AGGAGGTGGAA
*
7088568 TT-GCAAAAGGTGGTGGA
1 TTGGC-AAAGGAGGTGGA
7088585 GATAGAGGTG
Statistics
Matches: 29, Mismatches: 3, Indels: 6
0.76 0.08 0.16
Matches are distributed among these distances:
17 3 0.10
18 24 0.83
19 2 0.07
ACGTcount: A:0.30, C:0.04, G:0.47, T:0.19
Consensus pattern (18 bp):
TTGGCAAAGGAGGTGGAA
Found at i:7092343 original size:30 final size:30
Alignment explanation
Indices: 7092309--7092375 Score: 98
Period size: 30 Copynumber: 2.2 Consensus size: 30
7092299 AAAGGTGGCA
* * *
7092309 GATTTGGTGGTGGAGTTGGGAAAGGAAGTG
1 GATTTGGTGGTAGAATTGGCAAAGGAAGTG
*
7092339 GATTTGGTGGTAGAATTGGCAAAGGTAGTG
1 GATTTGGTGGTAGAATTGGCAAAGGAAGTG
7092369 GATTTGG
1 GATTTGG
7092376 AAAGGGTGGT
Statistics
Matches: 33, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
30 33 1.00
ACGTcount: A:0.24, C:0.01, G:0.45, T:0.30
Consensus pattern (30 bp):
GATTTGGTGGTAGAATTGGCAAAGGAAGTG
Found at i:7092411 original size:96 final size:97
Alignment explanation
Indices: 7092297--7092478 Score: 231
Period size: 96 Copynumber: 1.9 Consensus size: 97
7092287 GGAGGGTTTG
* * * ** *
7092297 GTAAAGGTGGCAGATTTGGTGGTGGAGTTGGGAAAGGAAGTGGATTTGGTGGTAGAATTGGCAAA
1 GTAAAGGAGGAAGATTTGGTGGTGGAGTTGGAAAAGGAAGTGGACATGGAGGTAGAATTGGCAAA
7092362 GGTAGTGGATTTGG-AAAGGGTGGTGGGATTA
66 GGTAGTGGATTTGGCAAAGGGTGGTGGGATTA
* * ** * *
7092393 GTAAAGGAGGAAGCTTTGGTGGTGGATTTGGAAAAGGTGGTGGACATGGAGGTGGCATTGGCAAA
1 GTAAAGGAGGAAGATTTGGTGGTGGAGTTGGAAAAGGAAGTGGACATGGAGGTAGAATTGGCAAA
* *
7092458 GGTGGTGGGTTTGGCAAAGGG
66 GGTAGTGGATTTGGCAAAGGG
7092479 GGAGGAATTG
Statistics
Matches: 71, Mismatches: 14, Indels: 1
0.83 0.16 0.01
Matches are distributed among these distances:
96 65 0.92
97 6 0.08
ACGTcount: A:0.25, C:0.04, G:0.46, T:0.25
Consensus pattern (97 bp):
GTAAAGGAGGAAGATTTGGTGGTGGAGTTGGAAAAGGAAGTGGACATGGAGGTAGAATTGGCAAA
GGTAGTGGATTTGGCAAAGGGTGGTGGGATTA
Found at i:7092433 original size:18 final size:18
Alignment explanation
Indices: 7092410--7092500 Score: 59
Period size: 18 Copynumber: 5.4 Consensus size: 18
7092400 AGGAAGCTTT
7092410 GGTGGTGGATTTGGAAAA
1 GGTGGTGGATTTGGAAAA
**
7092428 GGTGGTGGACATGG---A
1 GGTGGTGGATTTGGAAAA
* *
7092443 GGT-G-GCA-TTGGCAAA
1 GGTGGTGGATTTGGAAAA
* *
7092458 GGTGGTGGGTTTGGCAAA
1 GGTGGTGGATTTGGAAAA
* * *
7092476 GGGGGAGGAATTGGAAAA
1 GGTGGTGGATTTGGAAAA
7092494 GGTGGTG
1 GGTGGTG
7092501 AAGGTGAAGG
Statistics
Matches: 54, Mismatches: 13, Indels: 12
0.68 0.16 0.15
Matches are distributed among these distances:
12 3 0.06
13 2 0.04
14 1 0.02
15 8 0.15
16 1 0.02
17 1 0.02
18 38 0.70
ACGTcount: A:0.24, C:0.04, G:0.49, T:0.22
Consensus pattern (18 bp):
GGTGGTGGATTTGGAAAA
Found at i:7092593 original size:138 final size:138
Alignment explanation
Indices: 7092431--7092788 Score: 353
Period size: 150 Copynumber: 2.5 Consensus size: 138
7092421 TGGAAAAGGT
* *
7092431 GGTGGACATGGAGGTGGCATTGGCAAAGGTGGTGGGTTTGGCAAAGGGGGAGGAATTGGAAAAGG
1 GGTGGACATGGAGGTGG-AATGGCAAAGGTGGTAGGTTTGGCAAAGGGGGAGGAATTGGAAAAGG
7092496 TGGTGAA-GGTGAAGGAGGAGCCAGTGGTGGTTTTGGTGGAAGGGC-AAGTGGAGGTGGTGGAAT
65 TGGTGAAGGGTGAAGGAGGAGCCAGTGGTGGTTTTGGTGGAAGGGCTAA-TGGAGGTGGTGGAAT
7092559 TGGGAA-GAGC
129 TGGGAAGGA-C
* * * *
7092569 GGTGGACATGGAGGTGGAAATGGCAAAGGTGGTTGGTTTGGTAAATGGGGAGGAATTGCAAAGGG
1 GGTGGACATGGAGGTGG-AATGGCAAAGGTGGTAGGTTTGGCAAAGGGGGAGGAATTGGAAA---
* * * *** *
7092634 AGGTGGGATTTCAAAAGGTGGTGGAGGTGGAGTTGGTGGTGGTTTTGGTGGAGGGGCTAATGGAG
62 AGGT-GG---T--GAA-G-GGTGAAGGAGGAGCCAGTGGTGGTTTTGGTGGAAGGGCTAATGGAG
*
7092699 GTGGTGGAATTGGGAAGGAT
119 GTGGTGGAATTGGGAAGGAC
* * * * * * *
7092719 GGTGGACATGTAGGTGGCATCAGCAAAGGTGGTAGTTTTGGCAAAGGAGGTGGAATTGGAAGAGG
1 GGTGGACATGGAGGTGGAAT-GGCAAAGGTGGTAGGTTTGGCAAAGGGGGAGGAATTGGAAAAGG
*
7092784 AGGTG
65 TGGTG
7092789 GGATTGCAAA
Statistics
Matches: 178, Mismatches: 27, Indels: 27
0.77 0.12 0.12
Matches are distributed among these distances:
138 56 0.31
141 4 0.02
142 2 0.01
143 1 0.01
145 1 0.01
146 2 0.01
147 5 0.03
149 2 0.01
150 101 0.57
151 4 0.02
ACGTcount: A:0.25, C:0.05, G:0.48, T:0.22
Consensus pattern (138 bp):
GGTGGACATGGAGGTGGAATGGCAAAGGTGGTAGGTTTGGCAAAGGGGGAGGAATTGGAAAAGGT
GGTGAAGGGTGAAGGAGGAGCCAGTGGTGGTTTTGGTGGAAGGGCTAATGGAGGTGGTGGAATTG
GGAAGGAC
Found at i:7092698 original size:150 final size:150
Alignment explanation
Indices: 7092519--7092815 Score: 406
Period size: 150 Copynumber: 2.0 Consensus size: 150
7092509 GGAGGAGCCA
7092519 GTGGTGGTTTTGGTGGAAGGGCAAGTGGAGGTGGTGGAATTGGGAA-GAGCGGTGGACATGGAGG
1 GTGGTGGTTTTGGTGGAAGGGCAAGTGGAGGTGGTGGAATTGGGAAGGA-CGGTGGACATGGAGG
* * * *
7092583 TGGAAAT-GGCAAAGGTGGTTGGTTTGGTAAATGG-GGAGGAATTGCAAAG-GGAGGTGGGATTT
65 TGG-AATCAGCAAAGGTGGTAGGTTTGGCAAA-GGAGGAGGAATTG-AAAGAGGAGGTGGGATTG
*
7092645 CAAAAGGTGGTGGAGGTGGAGTTG
127 CAAAAGGTGGTGGAGATGGAGTTG
* * *
7092669 GTGGTGGTTTTGGTGGAGGGGCTAA-TGGAGGTGGTGGAATTGGGAAGGATGGTGGACATGTAGG
1 GTGGTGGTTTTGGTGGAAGGGC-AAGTGGAGGTGGTGGAATTGGGAAGGACGGTGGACATGGAGG
* * * *
7092733 TGGCATCAGCAAAGGTGGTAGTTTTGGCAAAGGAGGTGGAATTGGAAGAGGAGGTGGGATTGCAA
65 TGGAATCAGCAAAGGTGGTAGGTTTGGCAAAGGAGGAGGAATTGAAAGAGGAGGTGGGATTGCAA
7092798 AAGGTGGTGGAGATGGAG
130 AAGGTGGTGGAGATGGAG
7092816 GTGGAGCTGG
Statistics
Matches: 130, Mismatches: 12, Indels: 10
0.86 0.08 0.07
Matches are distributed among these distances:
149 7 0.05
150 119 0.92
151 4 0.03
ACGTcount: A:0.24, C:0.04, G:0.48, T:0.23
Consensus pattern (150 bp):
GTGGTGGTTTTGGTGGAAGGGCAAGTGGAGGTGGTGGAATTGGGAAGGACGGTGGACATGGAGGT
GGAATCAGCAAAGGTGGTAGGTTTGGCAAAGGAGGAGGAATTGAAAGAGGAGGTGGGATTGCAAA
AGGTGGTGGAGATGGAGTTG
Found at i:7092777 original size:18 final size:18
Alignment explanation
Indices: 7092756--7092808 Score: 56
Period size: 18 Copynumber: 2.9 Consensus size: 18
7092746 GGTGGTAGTT
7092756 TTGGCAAAGGAGGTGGAA
1 TTGGCAAAGGAGGTGGAA
*
7092774 TTGG-AAGAGGAGGTGGGA
1 TTGGCAA-AGGAGGTGGAA
*
7092792 TT-GCAAAAGGTGGTGGA
1 TTGGC-AAAGGAGGTGGA
7092809 GATGGAGGTG
Statistics
Matches: 29, Mismatches: 3, Indels: 6
0.76 0.08 0.16
Matches are distributed among these distances:
17 3 0.10
18 24 0.83
19 2 0.07
ACGTcount: A:0.30, C:0.04, G:0.47, T:0.19
Consensus pattern (18 bp):
TTGGCAAAGGAGGTGGAA
Found at i:7095156 original size:2 final size:2
Alignment explanation
Indices: 7095149--7095193 Score: 58
Period size: 2 Copynumber: 23.5 Consensus size: 2
7095139 AGAACAAGAT
* *
7095149 TA TA TA TA TA -A TA TG TA TA TA -A TA TA TA TA TA TA TG TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
7095189 TA TA T
1 TA TA T
7095194 TATGATAAAA
Statistics
Matches: 37, Mismatches: 4, Indels: 4
0.82 0.09 0.09
Matches are distributed among these distances:
1 2 0.05
2 35 0.95
ACGTcount: A:0.47, C:0.00, G:0.04, T:0.49
Consensus pattern (2 bp):
TA
Found at i:7095169 original size:11 final size:11
Alignment explanation
Indices: 7095153--7095190 Score: 60
Period size: 11 Copynumber: 3.5 Consensus size: 11
7095143 CAAGATTATA
7095153 TATATAATATG
1 TATATAATATG
*
7095164 TATATAATATA
1 TATATAATATG
7095175 TATAT-ATATG
1 TATATAATATG
7095185 TATATA
1 TATATA
7095191 TATTATGATA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
10 9 0.38
11 15 0.62
ACGTcount: A:0.47, C:0.00, G:0.05, T:0.47
Consensus pattern (11 bp):
TATATAATATG
Found at i:7096791 original size:30 final size:30
Alignment explanation
Indices: 7096752--7096833 Score: 76
Period size: 30 Copynumber: 2.7 Consensus size: 30
7096742 GGTGGAGGGT
* *
7096752 TTGGTAAAGGTGGCAGATTTGGTGGT-GAA
1 TTGGCAAAGGTAGCAGATTTGGTGGTAGAA
* * **
7096781 GTTGGGAAAGGAAGTGGATTTGGTGGTAGAA
1 -TTGGCAAAGGTAGCAGATTTGGTGGTAGAA
**
7096812 TTGGCAAAGGTAGTGGATTTGG
1 TTGGCAAAGGTAGCAGATTTGG
7096834 AAAGGGTGGT
Statistics
Matches: 44, Mismatches: 7, Indels: 2
0.83 0.13 0.04
Matches are distributed among these distances:
30 41 0.93
31 3 0.07
ACGTcount: A:0.26, C:0.02, G:0.43, T:0.29
Consensus pattern (30 bp):
TTGGCAAAGGTAGCAGATTTGGTGGTAGAA
Found at i:7096891 original size:18 final size:18
Alignment explanation
Indices: 7096868--7096958 Score: 59
Period size: 18 Copynumber: 5.4 Consensus size: 18
7096858 AGGAGGCTTT
7096868 GGTGGTGGATTTGGCAAA
1 GGTGGTGGATTTGGCAAA
**
7096886 GGTGGTGGACATGG---A
1 GGTGGTGGATTTGGCAAA
*
7096901 GGT-G-GCA-TTGGCAAA
1 GGTGGTGGATTTGGCAAA
*
7096916 GGTGGTGGGTTTGGCAAA
1 GGTGGTGGATTTGGCAAA
* * * * *
7096934 GGGGGAGGAATCGGAAAA
1 GGTGGTGGATTTGGCAAA
7096952 GGTGGTG
1 GGTGGTG
7096959 AAGGTGAAGG
Statistics
Matches: 53, Mismatches: 14, Indels: 12
0.67 0.18 0.15
Matches are distributed among these distances:
12 3 0.06
13 2 0.04
14 1 0.02
15 8 0.15
16 1 0.02
17 1 0.02
18 37 0.70
ACGTcount: A:0.23, C:0.07, G:0.49, T:0.21
Consensus pattern (18 bp):
GGTGGTGGATTTGGCAAA
Found at i:7097223 original size:18 final size:18
Alignment explanation
Indices: 7097209--7097272 Score: 83
Period size: 18 Copynumber: 3.6 Consensus size: 18
7097199 GGTTTGGCAA
7097209 AGGAGGTGGAATTGGAAG
1 AGGAGGTGGAATTGGAAG
*
7097227 AGGAGGTGGGATTGGAAG
1 AGGAGGTGGAATTGGAAG
* * *
7097245 AGGAGGTGGGATTGCAAA
1 AGGAGGTGGAATTGGAAG
*
7097263 AGGTGGTGGA
1 AGGAGGTGGA
7097273 GATGGAGGTG
Statistics
Matches: 41, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 41 1.00
ACGTcount: A:0.30, C:0.02, G:0.52, T:0.17
Consensus pattern (18 bp):
AGGAGGTGGAATTGGAAG
Found at i:7097253 original size:138 final size:137
Alignment explanation
Indices: 7096884--7097253 Score: 435
Period size: 138 Copynumber: 2.7 Consensus size: 137
7096874 GGATTTGGCA
* *
7096884 AAGG-TGGTGGACATGGAGGTGGCATTGGCAAAGGTGGTGGGTTTGGCAAAGGGGGAGGAATCGG
1 AAGGATGGTGGACATGGAGGTGGCATTGGCAAAGGTGGTAGGTTTGGCAAAGGGGGAGGAATTGG
** *** ***
7096948 AAA--AGGTGGTGAAGGTGAAGGAGGAGCCAGTGGTGGTTTTGGTGGAAGGGCAAGTGGAGGTGG
66 AAAGGAGGTGG-GATTG-GAA-GAGGAGGTGGTGGTGGTGGAGGTGGAAGGGCAAGTGGAGGTGG
*
7097011 TGGAATTGGG
128 TGGAATTGAG
* *
7097021 AA-GAGTGGTGGACATGGAGGTGGCATTGGCAAAGGTGGTTGGTTTGGTAAAGGGGGAGGAATTG
1 AAGGA-TGGTGGACATGGAGGTGGCATTGGCAAAGGTGGTAGGTTTGGCAAAGGGGGAGGAATTG
** * * *
7097085 GAAAGGGAGGTGGGATTTCAAAAGGTGGTGGTGGTGGTGGAGGTGGAGGGGCTAA-TGGAGGTGG
65 GAAA-GGAGGTGGGATTGGAAGAGGAGGTGGTGGTGGTGGAGGTGGAAGGGC-AAGTGGAGGTGG
7097149 TGGAATTGAG
128 TGGAATTGAG
* ** * *
7097159 AAGGATGGTGGACATGGAGGTAGCATCAGCAAAGGTGGTAGGTTTGGCAAAGGAGGTGGAATTGG
1 AAGGATGGTGGACATGGAGGTGGCATTGGCAAAGGTGGTAGGTTTGGCAAAGGGGGAGGAATTGG
7097224 AAGAGGAGGTGGGATTGGAAGAGGAGGTGG
66 AA-AGGAGGTGGGATTGGAAGAGGAGGTGG
7097254 GATTGCAAAA
Statistics
Matches: 197, Mismatches: 28, Indels: 15
0.82 0.12 0.06
Matches are distributed among these distances:
136 1 0.01
137 2 0.01
138 179 0.91
139 7 0.04
140 2 0.01
141 6 0.03
ACGTcount: A:0.25, C:0.05, G:0.49, T:0.20
Consensus pattern (137 bp):
AAGGATGGTGGACATGGAGGTGGCATTGGCAAAGGTGGTAGGTTTGGCAAAGGGGGAGGAATTGG
AAAGGAGGTGGGATTGGAAGAGGAGGTGGTGGTGGTGGAGGTGGAAGGGCAAGTGGAGGTGGTGG
AATTGAG
Found at i:7097271 original size:36 final size:36
Alignment explanation
Indices: 7097189--7097271 Score: 96
Period size: 36 Copynumber: 2.3 Consensus size: 36
7097179 TAGCATCAGC
* * *
7097189 AAAGGTGGTAGGTTTGGCAAAGGAGGTGGAATTGGA
1 AAAGGTGGTGGGATTGGCAAAGGAGGTGGAATTGCA
* * *
7097225 AGAGGAGGTGGGATTGG-AAGAGGAGGTGGGATTGCA
1 AAAGGTGGTGGGATTGGCAA-AGGAGGTGGAATTGCA
7097261 AAAGGTGGTGG
1 AAAGGTGGTGG
7097272 AGATGGAGGT
Statistics
Matches: 38, Mismatches: 8, Indels: 2
0.79 0.17 0.04
Matches are distributed among these distances:
35 2 0.05
36 36 0.95
ACGTcount: A:0.29, C:0.02, G:0.49, T:0.19
Consensus pattern (36 bp):
AAAGGTGGTGGGATTGGCAAAGGAGGTGGAATTGCA
Found at i:7099743 original size:2 final size:2
Alignment explanation
Indices: 7099736--7099768 Score: 50
Period size: 2 Copynumber: 17.0 Consensus size: 2
7099726 CAACTATAAA
*
7099736 AT AT AT AT AT AT AT AT AT AT A- AT AT AA AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
7099769 TAATAGTGTG
Statistics
Matches: 28, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
1 1 0.04
2 27 0.96
ACGTcount: A:0.55, C:0.00, G:0.00, T:0.45
Consensus pattern (2 bp):
AT
Found at i:7099825 original size:30 final size:30
Alignment explanation
Indices: 7099784--7099860 Score: 118
Period size: 30 Copynumber: 2.6 Consensus size: 30
7099774 GTGTGATAGA
* * *
7099784 ATATTTAATTCAATTGTTTGATATAAGATT
1 ATATTTGATTCAATTGATTGATATAAAATT
7099814 ATATTTGATTCAATTGATTGATATAAAATT
1 ATATTTGATTCAATTGATTGATATAAAATT
*
7099844 ATATTTGACTCAATTGA
1 ATATTTGATTCAATTGA
7099861 CTTATAAAAA
Statistics
Matches: 43, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
30 43 1.00
ACGTcount: A:0.38, C:0.05, G:0.10, T:0.47
Consensus pattern (30 bp):
ATATTTGATTCAATTGATTGATATAAAATT
Found at i:7100462 original size:72 final size:72
Alignment explanation
Indices: 7100367--7100513 Score: 240
Period size: 72 Copynumber: 2.0 Consensus size: 72
7100357 GTAATGGAGG
* *
7100367 AGGCTTTGGTTTTGGAATCGGAAAAGGTAGTGGACATGGAGGTGGCATCAGCAAAGGTGGCAGAA
1 AGGCTTTGGTTTTGGAATCGGAAAAGGTAGTGGACATGAAGGTGGCACCAGCAAAGGTGGCAGAA
7100432 TTAGCAA
66 TTAGCAA
* * * *
7100439 AGGCTTTGGTTTTGGAATTGGAAAAGTTGGTGGACATGAAGGTGGCACCGGCAAAGGTGGCAGAA
1 AGGCTTTGGTTTTGGAATCGGAAAAGGTAGTGGACATGAAGGTGGCACCAGCAAAGGTGGCAGAA
7100504 TTAGCAA
66 TTAGCAA
7100511 AGG
1 AGG
7100514 GAGAGGAATT
Statistics
Matches: 69, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
72 69 1.00
ACGTcount: A:0.30, C:0.11, G:0.37, T:0.22
Consensus pattern (72 bp):
AGGCTTTGGTTTTGGAATCGGAAAAGGTAGTGGACATGAAGGTGGCACCAGCAAAGGTGGCAGAA
TTAGCAA
Found at i:7101846 original size:2 final size:2
Alignment explanation
Indices: 7101839--7101876 Score: 51
Period size: 2 Copynumber: 19.5 Consensus size: 2
7101829 TCAGCAAGAC
* *
7101839 AT AT AT AT AT AT AT AT GT AT A- AT AT AT GT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
7101877 ATGATAAAAT
Statistics
Matches: 31, Mismatches: 4, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
1 1 0.03
2 30 0.97
ACGTcount: A:0.47, C:0.00, G:0.05, T:0.47
Consensus pattern (2 bp):
AT
Found at i:7101865 original size:17 final size:17
Alignment explanation
Indices: 7101839--7101878 Score: 55
Period size: 17 Copynumber: 2.4 Consensus size: 17
7101829 TCAGCAAGAC
7101839 ATAT-ATATATATATAT
1 ATATAATATATATATAT
* *
7101855 GTATAATATATGTATAT
1 ATATAATATATATATAT
7101872 ATATAAT
1 ATATAAT
7101879 GATAAAATTA
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
16 3 0.15
17 17 0.85
ACGTcount: A:0.47, C:0.00, G:0.05, T:0.47
Consensus pattern (17 bp):
ATATAATATATATATAT
Found at i:7103052 original size:48 final size:47
Alignment explanation
Indices: 7103000--7103115 Score: 196
Period size: 48 Copynumber: 2.4 Consensus size: 47
7102990 GGGAAAGGAA
7103000 GTGGATTTGGAAAGGGTGGTGGGATTAGTAAAGGAGGAGGCTTTGGTG
1 GTGGATTTGGAAA-GGTGGTGGGATTAGTAAAGGAGGAGGCTTTGGTG
*
7103048 GTGGATTTGGAAAAGGTGGTGGGCTTAGTAAAGGAGGAGGCTTTGGTG
1 GTGGATTTGG-AAAGGTGGTGGGATTAGTAAAGGAGGAGGCTTTGGTG
7103096 GTGGATTTGGGAAAGGTGGT
1 GTGGATTT-GGAAAGGTGGT
7103116 AGACATGGAG
Statistics
Matches: 65, Mismatches: 1, Indels: 4
0.93 0.01 0.06
Matches are distributed among these distances:
48 60 0.92
49 5 0.08
ACGTcount: A:0.22, C:0.03, G:0.47, T:0.28
Consensus pattern (47 bp):
GTGGATTTGGAAAGGTGGTGGGATTAGTAAAGGAGGAGGCTTTGGTG
Found at i:7103157 original size:18 final size:18
Alignment explanation
Indices: 7103125--7103182 Score: 62
Period size: 18 Copynumber: 3.2 Consensus size: 18
7103115 TAGACATGGA
* *
7103125 GGTGGCATTGCCAAAGGT
1 GGTGGAATTGGCAAAGGT
* *
7103143 GGTGGATTTGGCAAAGGG
1 GGTGGAATTGGCAAAGGT
* *
7103161 GGAGGAATTGGAAAAGGT
1 GGTGGAATTGGCAAAGGT
7103179 GGTG
1 GGTG
7103183 AAGGTGAAGG
Statistics
Matches: 31, Mismatches: 9, Indels: 0
0.77 0.22 0.00
Matches are distributed among these distances:
18 31 1.00
ACGTcount: A:0.26, C:0.07, G:0.47, T:0.21
Consensus pattern (18 bp):
GGTGGAATTGGCAAAGGT
Found at i:7103348 original size:111 final size:111
Alignment explanation
Indices: 7103225--7103571 Score: 667
Period size: 111 Copynumber: 3.1 Consensus size: 111
7103215 GGAAGGGCAA
7103225 GTGGAGGTGGTGGAATTGGGAAGGGTGGTGGCAATGGAGGTGGCATTGGCAAAGGTGGTTGGTTT
1 GTGGAGGTGGTGGAATTGGGAAGGGTGGTGGCAATGGAGGTGGCATTGGCAAAGGTGGTTGGTTT
7103290 GGCAAAGGGGGAGGAATTGGAAAGGAAGGTGGGATTTCGAAAGGAG
66 GGCAAAGGGGGAGGAATTGGAAAGGAAGGTGGGATTTCGAAAGGAG
7103336 GTGGAGGTGGTGGAATTGGGAAGGGTGGTGGCAATGGAGGTGGCATTGGCAAAGGTGGTTGGTTT
1 GTGGAGGTGGTGGAATTGGGAAGGGTGGTGGCAATGGAGGTGGCATTGGCAAAGGTGGTTGGTTT
*
7103401 GGCAAAGGGGGAGGAATTGGAAAGGAAGGTGCGATTTCGAAAGGAG
66 GGCAAAGGGGGAGGAATTGGAAAGGAAGGTGGGATTTCGAAAGGAG
7103447 GTGGAGGTGGTGGAATTGGGAAGGGTGGTGGCAATGGAGGTGGCATTGGCAAAGGTGGTTGGTTT
1 GTGGAGGTGGTGGAATTGGGAAGGGTGGTGGCAATGGAGGTGGCATTGGCAAAGGTGGTTGGTTT
*
7103512 GGCAAAGGGGCATGGAATTGGAAAGGAAGGTGGGATTTCGAAAGGAG
66 GGCAAAGGGGGA-GGAATTGGAAAGGAAGGTGGGATTTCGAAAGGAG
7103559 GTGGAGGTGGTGG
1 GTGGAGGTGGTGG
7103572 TGGTTTTGGT
Statistics
Matches: 232, Mismatches: 3, Indels: 1
0.98 0.01 0.00
Matches are distributed among these distances:
111 186 0.80
112 46 0.20
ACGTcount: A:0.24, C:0.05, G:0.50, T:0.21
Consensus pattern (111 bp):
GTGGAGGTGGTGGAATTGGGAAGGGTGGTGGCAATGGAGGTGGCATTGGCAAAGGTGGTTGGTTT
GGCAAAGGGGGAGGAATTGGAAAGGAAGGTGGGATTTCGAAAGGAG
Found at i:7103687 original size:18 final size:18
Alignment explanation
Indices: 7103630--7103688 Score: 66
Period size: 18 Copynumber: 3.3 Consensus size: 18
7103620 TGGACATGGA
*
7103630 GGTGGCATTGGCAAAGGT
1 GGTGGGATTGGCAAAGGT
* * *
7103648 GGTAGGTTTGGCAAAGGA
1 GGTGGGATTGGCAAAGGT
7103666 GGTGGGATT-GCAAAAGGT
1 GGTGGGATTGGC-AAAGGT
7103684 GGTGG
1 GGTGG
7103689 AGATGGAGGT
Statistics
Matches: 33, Mismatches: 7, Indels: 2
0.79 0.17 0.05
Matches are distributed among these distances:
17 2 0.06
18 31 0.94
ACGTcount: A:0.24, C:0.07, G:0.47, T:0.22
Consensus pattern (18 bp):
GGTGGGATTGGCAAAGGT
Found at i:7105109 original size:9 final size:9
Alignment explanation
Indices: 7105047--7105119 Score: 53
Period size: 9 Copynumber: 8.2 Consensus size: 9
7105037 ATATAATTTT
7105047 TTAAATATA
1 TTAAATATA
*
7105056 TTAAA-ATT
1 TTAAATATA
7105064 TTAAATATA
1 TTAAATATA
*
7105073 --AATTATA
1 TTAAATATA
*
7105080 TTAAATAAA
1 TTAAATATA
* *
7105089 TCATGATATA
1 TTA-AATATA
*
7105099 TTAATTATA
1 TTAAATATA
7105108 TTTAAATATA
1 -TTAAATATA
7105118 TT
1 TT
7105120 TATTTAATAA
Statistics
Matches: 47, Mismatches: 12, Indels: 10
0.68 0.17 0.14
Matches are distributed among these distances:
7 6 0.13
8 7 0.15
9 20 0.43
10 14 0.30
ACGTcount: A:0.51, C:0.01, G:0.01, T:0.47
Consensus pattern (9 bp):
TTAAATATA
Found at i:7105442 original size:4 final size:4
Alignment explanation
Indices: 7105433--7105471 Score: 69
Period size: 4 Copynumber: 9.8 Consensus size: 4
7105423 TTATTCATAA
*
7105433 AAAT AAAT AAAT AAAT AGAT AAAT AAAT AAAT AAAT AAA
1 AAAT AAAT AAAT AAAT AAAT AAAT AAAT AAAT AAAT AAA
7105472 ACAATGCTAG
Statistics
Matches: 33, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
4 33 1.00
ACGTcount: A:0.74, C:0.00, G:0.03, T:0.23
Consensus pattern (4 bp):
AAAT
Found at i:7106050 original size:22 final size:21
Alignment explanation
Indices: 7106004--7106050 Score: 62
Period size: 20 Copynumber: 2.3 Consensus size: 21
7105994 AATATATTTT
7106004 TTAT-TATTGATTTTATAATA
1 TTATATATTGATTTTATAATA
*
7106024 TTATATATTTATTTT-TAATA
1 TTATATATTGATTTTATAATA
*
7106044 TGATATA
1 TTATATA
7106051 GATCACATAA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
20 15 0.62
21 9 0.38
ACGTcount: A:0.36, C:0.00, G:0.04, T:0.60
Consensus pattern (21 bp):
TTATATATTGATTTTATAATA
Found at i:7110480 original size:31 final size:31
Alignment explanation
Indices: 7110445--7110508 Score: 85
Period size: 32 Copynumber: 2.1 Consensus size: 31
7110435 TGTTTGTCAT
* *
7110445 ATTTATATT-CATAAATTTTGATATATTAATA
1 ATTTATATTACATAAATTTTAAAATATT-ATA
*
7110476 ATTTATATTATATAAATTTTAAAATATTATA
1 ATTTATATTACATAAATTTTAAAATATTATA
7110507 AT
1 AT
7110509 ATTTACATTA
Statistics
Matches: 29, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
31 14 0.48
32 15 0.52
ACGTcount: A:0.45, C:0.02, G:0.02, T:0.52
Consensus pattern (31 bp):
ATTTATATTACATAAATTTTAAAATATTATA
Found at i:7110545 original size:17 final size:16
Alignment explanation
Indices: 7110525--7110558 Score: 50
Period size: 17 Copynumber: 2.1 Consensus size: 16
7110515 ATTACGTTCG
*
7110525 TATTATTTTTTATATTA
1 TATTATATTTTA-ATTA
7110542 TATTATATTTTAATTA
1 TATTATATTTTAATTA
7110558 T
1 T
7110559 TTTTTATATC
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
16 5 0.31
17 11 0.69
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (16 bp):
TATTATATTTTAATTA
Found at i:7110586 original size:11 final size:11
Alignment explanation
Indices: 7110534--7110586 Score: 56
Period size: 11 Copynumber: 4.8 Consensus size: 11
7110524 GTATTATTTT
7110534 TTATA-TTATA
1 TTATATTTATA
7110544 TTATATTT-TAA
1 TTATATTTAT-A
*
7110555 TTATTTTTTATA
1 TTA-TATTTATA
*
7110567 TCATATTTATA
1 TTATATTTATA
7110578 TTATATTTA
1 TTATATTTA
7110587 ATACCGAATT
Statistics
Matches: 35, Mismatches: 4, Indels: 7
0.76 0.09 0.15
Matches are distributed among these distances:
10 6 0.17
11 21 0.60
12 7 0.20
13 1 0.03
ACGTcount: A:0.34, C:0.02, G:0.00, T:0.64
Consensus pattern (11 bp):
TTATATTTATA
Found at i:7112264 original size:2 final size:2
Alignment explanation
Indices: 7112257--7112283 Score: 54
Period size: 2 Copynumber: 13.5 Consensus size: 2
7112247 ATAATCAAAG
7112257 AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT A
7112284 AGCATTCATT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 25 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:7121801 original size:21 final size:20
Alignment explanation
Indices: 7121777--7121868 Score: 69
Period size: 21 Copynumber: 4.4 Consensus size: 20
7121767 GCCATTTAAG
*
7121777 ATAATTTTGCTAACCTTTTAT
1 ATAATTTTGGTAA-CTTTTAT
* **
7121798 ATAATATTAATAA-TTTTAGAT
1 ATAATTTTGGTAACTTTT--AT
7121819 ATAATTTTGGTAACTTTTAGT
1 ATAATTTTGGTAACTTTTA-T
* * *
7121840 ACAACTTTGGTGACATTTTAT
1 ATAATTTTGGTAAC-TTTTAT
7121861 ATAATTTT
1 ATAATTTT
7121869 TGTAGGCTGG
Statistics
Matches: 55, Mismatches: 11, Indels: 10
0.72 0.14 0.13
Matches are distributed among these distances:
19 4 0.07
20 1 0.02
21 41 0.75
22 9 0.16
ACGTcount: A:0.34, C:0.08, G:0.09, T:0.50
Consensus pattern (20 bp):
ATAATTTTGGTAACTTTTAT
Found at i:7121980 original size:20 final size:20
Alignment explanation
Indices: 7121955--7122045 Score: 69
Period size: 20 Copynumber: 4.5 Consensus size: 20
7121945 TAACTTTTGA
7121955 AATAATTTTGATAACCTTTT
1 AATAATTTTGATAACCTTTT
*
7121975 AATAATCTTTGATATATCATTTT
1 AATAAT-TTTGATA-A-CCTTTT
** * **
7121998 --TTGTTTTGGTAACCTGTGA
1 AATAATTTTGATAACCT-TTT
*
7122017 AATAATTTTAATAACCTTTT
1 AATAATTTTGATAACCTTTT
7122037 AATAATTTT
1 AATAATTTT
7122046 TTATATATAT
Statistics
Matches: 52, Mismatches: 13, Indels: 12
0.68 0.17 0.16
Matches are distributed among these distances:
18 2 0.04
19 2 0.04
20 22 0.42
21 20 0.38
22 1 0.02
23 5 0.10
ACGTcount: A:0.33, C:0.09, G:0.08, T:0.51
Consensus pattern (20 bp):
AATAATTTTGATAACCTTTT
Found at i:7121998 original size:62 final size:61
Alignment explanation
Indices: 7121922--7122057 Score: 193
Period size: 62 Copynumber: 2.2 Consensus size: 61
7121912 TTTTTTTACT
* * * *
7121922 TTTGATA-AAATTTTTTATTTTGGTAACTTTTGAAATAATTTTGATAACCTTTTAATAATC
1 TTTGATATATATTTTTTATTTTGGTAACCTGTGAAATAATTTTAATAACCTTTTAATAATC
* *
7121982 TTTGATATATCATTTTTTGTTTTGGTAACCTGTGAAATAATTTTAATAACCTTTTAATAATT
1 TTTGATATAT-ATTTTTTATTTTGGTAACCTGTGAAATAATTTTAATAACCTTTTAATAATC
*
7122044 TTTTATATATATTT
1 TTTGATATATATTT
7122058 GATATAATTT
Statistics
Matches: 67, Mismatches: 7, Indels: 3
0.87 0.09 0.04
Matches are distributed among these distances:
60 7 0.10
61 5 0.07
62 55 0.82
ACGTcount: A:0.32, C:0.07, G:0.08, T:0.54
Consensus pattern (61 bp):
TTTGATATATATTTTTTATTTTGGTAACCTGTGAAATAATTTTAATAACCTTTTAATAATC
Found at i:7122217 original size:21 final size:20
Alignment explanation
Indices: 7122093--7122228 Score: 55
Period size: 21 Copynumber: 6.5 Consensus size: 20
7122083 TGGAAGCTTA
* *
7122093 TAATATAATTTTAGTAATTTT
1 TAATATAA-TTTAATAACTTT
* * *
7122114 TGATATAATTTCGATAACATT
1 TAATATAATTT-AATAACTTT
*
7122135 TAATATAATTT--TGACAGTCTT
1 TAATATAATTTAAT-A-ACT-TT
* *
7122156 GAATATAATTT-TTCAACTTTT
1 TAATATAATTTAAT-AAC-TTT
* *
7122177 TAA-ATTACTTTGATAACTTT
1 TAATA-TAATTTAATAACTTT
*
7122197 TAATATGATTTAATAACCTTT
1 TAATATAATTTAATAA-CTTT
*
7122218 TTATATAATTT
1 TAATATAATTT
7122229 TGGTAACATT
Statistics
Matches: 86, Mismatches: 19, Indels: 20
0.69 0.15 0.16
Matches are distributed among these distances:
18 1 0.01
19 1 0.01
20 19 0.22
21 61 0.71
22 4 0.05
ACGTcount: A:0.36, C:0.07, G:0.06, T:0.51
Consensus pattern (20 bp):
TAATATAATTTAATAACTTT
Found at i:7123707 original size:34 final size:34
Alignment explanation
Indices: 7123443--7123706 Score: 447
Period size: 34 Copynumber: 7.7 Consensus size: 34
7123433 AAGTGTGTTA
* * *
7123443 GGTGAAGAATATTAGGTGTGCTAAGTGATGTATTT
1 GGTG-AGAATGTTAGGTGTGTTAGGTGATGTATTT
7123478 GGTGAGAATGTTAGGTGTGTTAGGTGATGTATTT
1 GGTGAGAATGTTAGGTGTGTTAGGTGATGTATTT
* *
7123512 GGTGAGAATGTTAGGTGTATTAGGTAATGTATTT
1 GGTGAGAATGTTAGGTGTGTTAGGTGATGTATTT
7123546 GGTGAGAATGTTAGGTGTGTTAGGTGATGTATTT
1 GGTGAGAATGTTAGGTGTGTTAGGTGATGTATTT
7123580 GGTGAGAATGTTAGGTGTGTTAGGTGATGTATTT
1 GGTGAGAATGTTAGGTGTGTTAGGTGATGTATTT
*
7123614 GGTGAGAATGTTAGGTGTGTTAGGTGACGTATTT
1 GGTGAGAATGTTAGGTGTGTTAGGTGATGTATTT
*
7123648 GGTGAGAATGTTAGGTGTGTTAGGTAATGTATTT
1 GGTGAGAATGTTAGGTGTGTTAGGTGATGTATTT
*
7123682 GGTGAGAATATTAGGTGTGTTAGGT
1 GGTGAGAATGTTAGGTGTGTTAGGT
7123707 ATTTTATATT
Statistics
Matches: 218, Mismatches: 11, Indels: 1
0.95 0.05 0.00
Matches are distributed among these distances:
34 214 0.98
35 4 0.02
ACGTcount: A:0.23, C:0.01, G:0.36, T:0.40
Consensus pattern (34 bp):
GGTGAGAATGTTAGGTGTGTTAGGTGATGTATTT
Found at i:7128140 original size:34 final size:34
Alignment explanation
Indices: 7128099--7128357 Score: 473
Period size: 34 Copynumber: 7.6 Consensus size: 34
7128089 TGTTAGGTAA
* *
7128099 AGAATGTTAGGTGTGTTAAGTAATGTATTTGGTG
1 AGAATGTTAGGTGTGTTAGGTGATGTATTTGGTG
7128133 AGAATGTTAGGTGTGTTAGGTGATGTATTTGGTG
1 AGAATGTTAGGTGTGTTAGGTGATGTATTTGGTG
*
7128167 AGAATGTTAGGTGTGTTAGGTAATGTATTTGGTG
1 AGAATGTTAGGTGTGTTAGGTGATGTATTTGGTG
*
7128201 AGAATGTTAGGTGTATTAGGTGATGTATTTGGTG
1 AGAATGTTAGGTGTGTTAGGTGATGTATTTGGTG
7128235 AGAATGTTAGGTGTGTTAGGTGATGTATTTGGTG
1 AGAATGTTAGGTGTGTTAGGTGATGTATTTGGTG
7128269 AGAATGTTAGGTGTGTTAGGTGATGTATTTGGTG
1 AGAATGTTAGGTGTGTTAGGTGATGTATTTGGTG
*
7128303 AGAATGTTAGGTGTGTTAGGTAATGTATTTGGTG
1 AGAATGTTAGGTGTGTTAGGTGATGTATTTGGTG
7128337 AGAATGTTAGGTGTGTTAGGT
1 AGAATGTTAGGTGTGTTAGGT
7128358 ATTTTATATT
Statistics
Matches: 218, Mismatches: 7, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
34 218 1.00
ACGTcount: A:0.23, C:0.00, G:0.36, T:0.41
Consensus pattern (34 bp):
AGAATGTTAGGTGTGTTAGGTGATGTATTTGGTG
Done.