Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Scaffold1
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 8764944
ACGTcount: A:0.31, C:0.15, G:0.15, T:0.31
Warning! 632878 characters in sequence are not A, C, G, or T
File 45 of 52
Found at i:7269045 original size:30 final size:29
Alignment explanation
Indices: 7268985--7269049 Score: 71
Period size: 30 Copynumber: 2.2 Consensus size: 29
7268975 TTTTAAAATT
* *
7268985 TATATAAATATTTAAATAAAATTATAATA
1 TATAAAAATATATAAATAAAATTATAATA
7269014 TAATAAAAATATATAAATATAATATT-T-ATA
1 T-ATAAAAATATATAAATA-AA-ATTATAATA
7269044 TATAAA
1 TATAAA
7269050 TTATTATATT
Statistics
Matches: 31, Mismatches: 2, Indels: 6
0.79 0.05 0.15
Matches are distributed among these distances:
29 6 0.19
30 19 0.61
31 3 0.10
32 3 0.10
ACGTcount: A:0.60, C:0.00, G:0.00, T:0.40
Consensus pattern (29 bp):
TATAAAAATATATAAATAAAATTATAATA
Found at i:7269237 original size:22 final size:21
Alignment explanation
Indices: 7269193--7269238 Score: 58
Period size: 22 Copynumber: 2.1 Consensus size: 21
7269183 TATTTTATTA
*
7269193 TTATAATAATTAATCTTACAT
1 TTATAATAATTAATATTACAT
7269214 TTATAATCAATTAAATATTA-AT
1 TTATAAT-AATT-AATATTACAT
7269236 TTA
1 TTA
7269239 ATCGGCATAA
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
21 7 0.32
22 9 0.41
23 6 0.27
ACGTcount: A:0.46, C:0.07, G:0.00, T:0.48
Consensus pattern (21 bp):
TTATAATAATTAATATTACAT
Found at i:7269365 original size:18 final size:18
Alignment explanation
Indices: 7269322--7269366 Score: 58
Period size: 18 Copynumber: 2.5 Consensus size: 18
7269312 AATTAATTAA
7269322 ATAAAAATTATAAAATAT
1 ATAAAAATTATAAAATAT
7269340 A-AATAAATTA-AAAATAT
1 ATAA-AAATTATAAAATAT
7269357 ACTAAAAATT
1 A-TAAAAATT
7269367 TTCATTATAA
Statistics
Matches: 24, Mismatches: 0, Indels: 6
0.80 0.00 0.20
Matches are distributed among these distances:
17 10 0.42
18 12 0.50
19 2 0.08
ACGTcount: A:0.67, C:0.02, G:0.00, T:0.31
Consensus pattern (18 bp):
ATAAAAATTATAAAATAT
Found at i:7269415 original size:22 final size:20
Alignment explanation
Indices: 7269363--7269420 Score: 62
Period size: 22 Copynumber: 2.7 Consensus size: 20
7269353 ATATACTAAA
7269363 AATTTTCATTATAAATTATTTT
1 AATTTT-ATTA-AAATTATTTT
7269385 AATTTTATTAAAATTAATTTT
1 AATTTTATTAAAATT-ATTTT
* *
7269406 ATTATTTATTCAAAT
1 AAT-TTTATTAAAAT
7269421 AAATCTAACA
Statistics
Matches: 32, Mismatches: 2, Indels: 4
0.84 0.05 0.11
Matches are distributed among these distances:
20 5 0.16
21 11 0.34
22 16 0.50
ACGTcount: A:0.40, C:0.03, G:0.00, T:0.57
Consensus pattern (20 bp):
AATTTTATTAAAATTATTTT
Found at i:7270041 original size:22 final size:22
Alignment explanation
Indices: 7270007--7270054 Score: 62
Period size: 22 Copynumber: 2.2 Consensus size: 22
7269997 ATAAAAATAA
*
7270007 TTTT-TTTATATTTATATTATT
1 TTTTATTTAAATTTATATTATT
*
7270028 TTTTATTTAAATTTATTTTATT
1 TTTTATTTAAATTTATATTATT
*
7270050 ATTTA
1 TTTTA
7270055 AAAATATTAA
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
21 4 0.17
22 19 0.83
ACGTcount: A:0.27, C:0.00, G:0.00, T:0.73
Consensus pattern (22 bp):
TTTTATTTAAATTTATATTATT
Found at i:7270051 original size:18 final size:18
Alignment explanation
Indices: 7270005--7270056 Score: 67
Period size: 16 Copynumber: 3.1 Consensus size: 18
7269995 AAATAAAAAT
7270005 AATTT-TTTTA-TATTTA
1 AATTTATTTTATTATTTA
*
7270021 TA-TTATTTT-TTATTTA
1 AATTTATTTTATTATTTA
7270037 AATTTATTTTATTATTTA
1 AATTTATTTTATTATTTA
7270055 AA
1 AA
7270057 AATATTAAAA
Statistics
Matches: 30, Mismatches: 2, Indels: 6
0.79 0.05 0.16
Matches are distributed among these distances:
15 2 0.07
16 12 0.40
17 7 0.23
18 9 0.30
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (18 bp):
AATTTATTTTATTATTTA
Found at i:7270062 original size:18 final size:17
Alignment explanation
Indices: 7270024--7270062 Score: 51
Period size: 18 Copynumber: 2.2 Consensus size: 17
7270014 ATATTTATAT
**
7270024 TATTTTTTATTTAAATT
1 TATTTTTTATTTAAAAA
7270041 TATTTTATTATTTAAAAA
1 TATTTT-TTATTTAAAAA
7270059 TATT
1 TATT
7270063 AAAAATTAAT
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
17 6 0.32
18 13 0.68
ACGTcount: A:0.36, C:0.00, G:0.00, T:0.64
Consensus pattern (17 bp):
TATTTTTTATTTAAAAA
Found at i:7270131 original size:18 final size:19
Alignment explanation
Indices: 7270099--7270136 Score: 51
Period size: 18 Copynumber: 2.1 Consensus size: 19
7270089 TTATAATTAA
7270099 ATTTAAATAAAAAT-ATTT
1 ATTTAAATAAAAATAATTT
* *
7270117 ATTTAAATTATAATAATTT
1 ATTTAAATAAAAATAATTT
7270136 A
1 A
7270137 AATCAATTCA
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
18 12 0.71
19 5 0.29
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (19 bp):
ATTTAAATAAAAATAATTT
Found at i:7272562 original size:15 final size:15
Alignment explanation
Indices: 7272542--7272570 Score: 58
Period size: 15 Copynumber: 1.9 Consensus size: 15
7272532 GAAATATGAA
7272542 ATATTTATATTTAAT
1 ATATTTATATTTAAT
7272557 ATATTTATATTTAA
1 ATATTTATATTTAA
7272571 ACACAATCAA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.41, C:0.00, G:0.00, T:0.59
Consensus pattern (15 bp):
ATATTTATATTTAAT
Found at i:7272663 original size:84 final size:84
Alignment explanation
Indices: 7272520--7272681 Score: 261
Period size: 84 Copynumber: 1.9 Consensus size: 84
7272510 GGACTCCTCA
* *
7272520 TTAATATATAATGAAATATGAAATATTTATATTTAATATATTTATATTTAAACACAATCAAATAG
1 TTAATATATAATGAAATATAAAATATTTATAATTAATATATTTATATTTAAACACAATCAAATAG
*
7272585 AAAAAATATATATTTGTAT
66 AAAAAATAAATATTTGTAT
* * * *
7272604 TTAATATATAATTAAATATAAAATTTTTATAATTAATATATTTATATTTAAATATAATCAAATAG
1 TTAATATATAATGAAATATAAAATATTTATAATTAATATATTTATATTTAAACACAATCAAATAG
7272669 AAAAAATAAATAT
66 AAAAAATAAATAT
7272682 ATTTACATTT
Statistics
Matches: 71, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
84 71 1.00
ACGTcount: A:0.52, C:0.02, G:0.03, T:0.42
Consensus pattern (84 bp):
TTAATATATAATGAAATATAAAATATTTATAATTAATATATTTATATTTAAACACAATCAAATAG
AAAAAATAAATATTTGTAT
Found at i:7272961 original size:2 final size:2
Alignment explanation
Indices: 7272956--7272989 Score: 68
Period size: 2 Copynumber: 17.0 Consensus size: 2
7272946 AGCAGTAACA
7272956 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
7272990 TTCCTCGCTT
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 32 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:7273161 original size:2 final size:2
Alignment explanation
Indices: 7273154--7273192 Score: 78
Period size: 2 Copynumber: 19.5 Consensus size: 2
7273144 CAGCAGTAAC
7273154 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
7273193 TTCCTTGCTT
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 37 1.00
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (2 bp):
TA
Found at i:7273267 original size:203 final size:201
Alignment explanation
Indices: 7272873--7273269 Score: 654
Period size: 203 Copynumber: 2.0 Consensus size: 201
7272863 CAATAACCAT
*
7272873 AAGATGCCTTTCAATAGACAAGCAAAAGGCATCAACTGCCCATGGACTAAGCTAAGGCACTCAAC
1 AAGATGCCTTTCAATAGACAAGCAAAAGGCATCAACTGCCCAGGGACTAAGCTAAGGCACTCAAC
7272938 AATATATCAGCAGTAACAATATATATATATATATATATATATATATATATATTTCCTCGCTTTTC
66 AATATATCAGCAGTAACAATATATATATATATATATATATATATATATATATTTCCTCGCTTTTC
* * * *
7273003 GAAGATTTATGGACTCGTGAGAGTTAGCATAACATCTGTTCTCCATTGATCCAACTAAATGAAGT
131 CAAGATTTACGGACTCCTGAGAGTTAGCATAACATCTATTCTCCATTGATCCAACTAAATGAAGT
7273068 ACCCAG
196 ACCCAG
* * *
7273074 AAGATGCCTTTCAATAGAGAAGCAAACGGCATCAACTGCCCAGGGACTAAGCTAAGGCAGTCAAC
1 AAGATGCCTTTCAATAGACAAGCAAAAGGCATCAACTGCCCAGGGACTAAGCTAAGGCACTCAAC
* *
7273139 -A-ATGTCAGCAGTAACTATATATATATATATATATATATATATATATATATATATTTCCTTGCT
66 AATATATCAGCAGTAAC---A-ATATATATATATATATATATATATATATATATATTTCCTCGCT
7273202 TTTCCAAGATTTACGGACTCCTGAGAGTTAGCATAACATCTATTCTCCATTGATCCAACTAAATG
127 TTTCCAAGATTTACGGACTCCTGAGAGTTAGCATAACATCTATTCTCCATTGATCCAACTAAATG
7273267 AAG
192 AAG
7273270 AACTCAAATA
Statistics
Matches: 182, Mismatches: 10, Indels: 6
0.92 0.05 0.03
Matches are distributed among these distances:
199 13 0.07
200 1 0.01
201 61 0.34
202 1 0.01
203 106 0.58
ACGTcount: A:0.37, C:0.19, G:0.15, T:0.30
Consensus pattern (201 bp):
AAGATGCCTTTCAATAGACAAGCAAAAGGCATCAACTGCCCAGGGACTAAGCTAAGGCACTCAAC
AATATATCAGCAGTAACAATATATATATATATATATATATATATATATATATTTCCTCGCTTTTC
CAAGATTTACGGACTCCTGAGAGTTAGCATAACATCTATTCTCCATTGATCCAACTAAATGAAGT
ACCCAG
Found at i:7275594 original size:30 final size:30
Alignment explanation
Indices: 7275536--7275617 Score: 96
Period size: 30 Copynumber: 2.7 Consensus size: 30
7275526 TGCTATTATA
* *
7275536 AAAATTTAATTAATTATAATTA-AATTTAAAT
1 AAAATTT-ATTTATTA-AATAATAATTTAAAT
7275567 AAAATTTATTTATTAAATAATAATTTAAAT
1 AAAATTTATTTATTAAATAATAATTTAAAT
* *
7275597 TAAATTAATTT-TTAAATAATA
1 AAAATTTATTTATTAAATAATA
7275618 TTTTTTAATA
Statistics
Matches: 46, Mismatches: 4, Indels: 4
0.85 0.07 0.07
Matches are distributed among these distances:
29 14 0.30
30 25 0.54
31 7 0.15
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (30 bp):
AAAATTTATTTATTAAATAATAATTTAAAT
Found at i:7275613 original size:47 final size:45
Alignment explanation
Indices: 7275547--7275634 Score: 115
Period size: 47 Copynumber: 1.9 Consensus size: 45
7275537 AAATTTAATT
*
7275547 AATTATAATTAAATTTAAATAAAATTTATTTATTAAATAATAATTTA
1 AATTATAATTAAATTTAAATAAAATTT-TTTAAT-AATAATAATTTA
* *
7275594 AATTA-AATTAATTTTTAAATAATATTTTTTAATAATAATAA
1 AATTATAATTAA-ATTTAAATAAAATTTTTTAATAATAATAA
7275635 ATAAATCACT
Statistics
Matches: 37, Mismatches: 3, Indels: 4
0.84 0.07 0.09
Matches are distributed among these distances:
45 8 0.22
46 11 0.30
47 18 0.49
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (45 bp):
AATTATAATTAAATTTAAATAAAATTTTTTAATAATAATAATTTA
Found at i:7276555 original size:1 final size:1
Alignment explanation
Indices: 7276551--7276575 Score: 50
Period size: 1 Copynumber: 25.0 Consensus size: 1
7276541 AGGAAAAAAA
7276551 GGGGGGGGGGGGGGGGGGGGGGGGG
1 GGGGGGGGGGGGGGGGGGGGGGGGG
7276576 AACTATCACA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
1 24 1.00
ACGTcount: A:0.00, C:0.00, G:1.00, T:0.00
Consensus pattern (1 bp):
G
Found at i:7279317 original size:13 final size:13
Alignment explanation
Indices: 7279299--7279325 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
7279289 TTCAAGTAGG
7279299 TCTTGAATATAGA
1 TCTTGAATATAGA
7279312 TCTTGAATATAGA
1 TCTTGAATATAGA
7279325 T
1 T
7279326 ACTTCAAAAA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.37, C:0.07, G:0.15, T:0.41
Consensus pattern (13 bp):
TCTTGAATATAGA
Found at i:7282867 original size:2 final size:2
Alignment explanation
Indices: 7282860--7282912 Score: 106
Period size: 2 Copynumber: 26.5 Consensus size: 2
7282850 TGTAGTCTTA
7282860 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
7282902 AT AT AT AT AT A
1 AT AT AT AT AT A
7282913 AACGGGAGAG
Statistics
Matches: 51, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 51 1.00
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (2 bp):
AT
Found at i:7283111 original size:24 final size:22
Alignment explanation
Indices: 7283052--7283111 Score: 57
Period size: 24 Copynumber: 2.5 Consensus size: 22
7283042 AATACGATTA
* *
7283052 AATTTAAATTAAATTTAGTTAT
1 AATTTAATTTAAATATAGTTAT
*
7283074 AATATTAATATTAAATATATTTATT
1 AAT-TTAAT-TTAAATATAGTTA-T
7283099 CAATTTAATTTAA
1 -AATTTAATTTAA
7283112 CTTACAAATT
Statistics
Matches: 31, Mismatches: 3, Indels: 6
0.77 0.08 0.15
Matches are distributed among these distances:
22 3 0.10
23 4 0.13
24 15 0.48
25 6 0.19
26 3 0.10
ACGTcount: A:0.47, C:0.02, G:0.02, T:0.50
Consensus pattern (22 bp):
AATTTAATTTAAATATAGTTAT
Found at i:7285191 original size:15 final size:15
Alignment explanation
Indices: 7285162--7285194 Score: 50
Period size: 15 Copynumber: 2.2 Consensus size: 15
7285152 AAATATAAAC
7285162 AATTAAAATCTAATT
1 AATTAAAATCTAATT
7285177 AATTAAAAT-TGAATT
1 AATTAAAATCT-AATT
7285192 AAT
1 AAT
7285195 CGAAATAATT
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
14 1 0.06
15 16 0.94
ACGTcount: A:0.55, C:0.03, G:0.03, T:0.39
Consensus pattern (15 bp):
AATTAAAATCTAATT
Found at i:7288502 original size:17 final size:17
Alignment explanation
Indices: 7288480--7288512 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
7288470 TTTATAAATA
7288480 ATATTTAATATATATTT
1 ATATTTAATATATATTT
*
7288497 ATATTTAATATTTATT
1 ATATTTAATATATATT
7288513 GTGAATGCAT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.39, C:0.00, G:0.00, T:0.61
Consensus pattern (17 bp):
ATATTTAATATATATTT
Found at i:7289522 original size:17 final size:17
Alignment explanation
Indices: 7289500--7289557 Score: 64
Period size: 22 Copynumber: 3.2 Consensus size: 17
7289490 TATGCAATCC
7289500 TATTATATTAATATATT
1 TATTATATTAATATATT
7289517 TATTATATTATAATTATAATTT
1 TATTATA-T-TAA-TAT-A-TT
7289539 TATTATATTAATA-ATT
1 TATTATATTAATATATT
7289555 TAT
1 TAT
7289558 ATTATATAAA
Statistics
Matches: 36, Mismatches: 0, Indels: 11
0.77 0.00 0.23
Matches are distributed among these distances:
16 5 0.14
17 8 0.22
18 1 0.03
19 5 0.14
20 6 0.17
21 2 0.06
22 9 0.25
ACGTcount: A:0.41, C:0.00, G:0.00, T:0.59
Consensus pattern (17 bp):
TATTATATTAATATATT
Found at i:7289579 original size:32 final size:34
Alignment explanation
Indices: 7289519--7289595 Score: 88
Period size: 32 Copynumber: 2.3 Consensus size: 34
7289509 AATATATTTA
**
7289519 TTATATTATAATTATAATTTTATTATATTA-ATAAT
1 TTATATTAT-ATTATAATTTTAAAATATTATAT-AT
7289554 TTATATTATA-TA-AATTTTAAAATATTATATAT
1 TTATATTATATTATAATTTTAAAATATTATATAT
*
7289586 TTATACTATA
1 TTATATTATA
7289596 GATATATATT
Statistics
Matches: 38, Mismatches: 3, Indels: 5
0.83 0.07 0.11
Matches are distributed among these distances:
32 24 0.63
33 4 0.11
34 1 0.03
35 9 0.24
ACGTcount: A:0.44, C:0.01, G:0.00, T:0.55
Consensus pattern (34 bp):
TTATATTATATTATAATTTTAAAATATTATATAT
Found at i:7289583 original size:5 final size:5
Alignment explanation
Indices: 7289500--7289564 Score: 59
Period size: 5 Copynumber: 13.6 Consensus size: 5
7289490 TATGCAATCC
*
7289500 TATTA TATTA -A-TA TATT- TATTA TATTA TAATTA TAATTT TATTA TATTA
1 TATTA TATTA TATTA TATTA TATTA TATTA T-ATTA T-ATTA TATTA TATTA
*
7289549 -ATAA T-TTA TATTA TAT
1 TATTA TATTA TATTA TAT
7289565 AAATTTTAAA
Statistics
Matches: 50, Mismatches: 4, Indels: 12
0.76 0.06 0.18
Matches are distributed among these distances:
3 2 0.04
4 12 0.24
5 26 0.52
6 10 0.20
ACGTcount: A:0.42, C:0.00, G:0.00, T:0.58
Consensus pattern (5 bp):
TATTA
Found at i:7290109 original size:2 final size:2
Alignment explanation
Indices: 7290102--7290132 Score: 62
Period size: 2 Copynumber: 15.5 Consensus size: 2
7290092 ATGAGATTGA
7290102 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
7290133 AATAAAGGAG
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 29 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:7291462 original size:25 final size:26
Alignment explanation
Indices: 7291417--7291471 Score: 60
Period size: 25 Copynumber: 2.2 Consensus size: 26
7291407 AAAATATTTT
* *
7291417 TAAATATAAATTTAATTATAA-AATA
1 TAAAAATAAATTTAATAATAATAATA
*
7291442 TAAAAATAAA-TTAATGAATAATAATT
1 TAAAAATAAATTTAAT-AATAATAATA
7291468 TAAA
1 TAAA
7291472 CTTTCAAATC
Statistics
Matches: 25, Mismatches: 3, Indels: 3
0.81 0.10 0.10
Matches are distributed among these distances:
24 5 0.20
25 13 0.52
26 7 0.28
ACGTcount: A:0.62, C:0.00, G:0.02, T:0.36
Consensus pattern (26 bp):
TAAAAATAAATTTAATAATAATAATA
Found at i:7292926 original size:28 final size:27
Alignment explanation
Indices: 7292889--7292954 Score: 82
Period size: 28 Copynumber: 2.4 Consensus size: 27
7292879 TAAATATTTT
7292889 TAATT-TTTTAAT-TTTAATATTAAAAA
1 TAATTATTTTAATATTT-ATATTAAAAA
* *
7292915 TATTATATTTTAATATTTATATTAAATA
1 TAAT-TATTTTAATATTTATATTAAAAA
7292943 TAATTATTTTAA
1 TAATTATTTTAA
7292955 AAAATAAAAA
Statistics
Matches: 34, Mismatches: 3, Indels: 5
0.81 0.07 0.12
Matches are distributed among these distances:
26 3 0.09
27 9 0.26
28 19 0.56
29 3 0.09
ACGTcount: A:0.44, C:0.00, G:0.00, T:0.56
Consensus pattern (27 bp):
TAATTATTTTAATATTTATATTAAAAA
Found at i:7292942 original size:13 final size:14
Alignment explanation
Indices: 7292905--7292955 Score: 50
Period size: 15 Copynumber: 3.6 Consensus size: 14
7292895 TTTAATTTTA
*
7292905 ATATTAAAAATATT
1 ATATTAAATATATT
*
7292919 ATATTTTAATAT-TT
1 ATA-TTAAATATATT
7292933 ATATTAAATATAATT
1 ATATTAAATAT-ATT
*
7292948 ATTTTAAA
1 ATATTAAA
7292956 AAATAAAAAA
Statistics
Matches: 30, Mismatches: 4, Indels: 5
0.77 0.10 0.13
Matches are distributed among these distances:
13 7 0.23
14 8 0.27
15 15 0.50
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (14 bp):
ATATTAAATATATT
Found at i:7292965 original size:51 final size:51
Alignment explanation
Indices: 7292910--7293010 Score: 118
Period size: 51 Copynumber: 2.0 Consensus size: 51
7292900 TTTTAATATT
* *
7292910 AAAAATATTA-TATT-TTAATATTTATATTA-AATATAATTATTTTAAAAAATA
1 AAAAAT-TTACTATTATT-ATATTTAAATAATAATATAATT-TTTTAAAAAATA
* *
7292961 AAAAATTTACTGTTATTATATTTAAATAATAATATAATTTTTTAATAAAT
1 AAAAATTTACTATTATTATATTTAAATAATAATATAATTTTTTAAAAAAT
7293011 TTTAAATATA
Statistics
Matches: 43, Mismatches: 4, Indels: 6
0.81 0.08 0.11
Matches are distributed among these distances:
50 3 0.07
51 29 0.67
52 11 0.26
ACGTcount: A:0.50, C:0.01, G:0.01, T:0.48
Consensus pattern (51 bp):
AAAAATTTACTATTATTATATTTAAATAATAATATAATTTTTTAAAAAATA
Found at i:7293231 original size:14 final size:14
Alignment explanation
Indices: 7293214--7293247 Score: 59
Period size: 14 Copynumber: 2.4 Consensus size: 14
7293204 ATAAAAAAAT
7293214 AAAAAGAAAAAGGA
1 AAAAAGAAAAAGGA
*
7293228 AAAAAAAAAAAGGA
1 AAAAAGAAAAAGGA
7293242 AAAAAG
1 AAAAAG
7293248 GGTTAAATCA
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
14 18 1.00
ACGTcount: A:0.82, C:0.00, G:0.18, T:0.00
Consensus pattern (14 bp):
AAAAAGAAAAAGGA
Found at i:7293248 original size:22 final size:21
Alignment explanation
Indices: 7293206--7293245 Score: 64
Period size: 21 Copynumber: 1.9 Consensus size: 21
7293196 TACTGTCCAT
7293206 AAAAAAATAAAAAGAAAAAGG
1 AAAAAAATAAAAAGAAAAAGG
7293227 AAAAAAA-AAAAAGGAAAAA
1 AAAAAAATAAAAA-GAAAAA
7293246 AGGGTTAAAT
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
20 5 0.28
21 13 0.72
ACGTcount: A:0.85, C:0.00, G:0.12, T:0.03
Consensus pattern (21 bp):
AAAAAAATAAAAAGAAAAAGG
Found at i:7298415 original size:22 final size:22
Alignment explanation
Indices: 7298389--7298437 Score: 66
Period size: 22 Copynumber: 2.2 Consensus size: 22
7298379 TTAAATTTAA
7298389 ATATTAATATAA-AAATAATTATT
1 ATATTAAT-TAATAAATAA-TATT
7298412 -TATTAATTAATAAATAATATT
1 ATATTAATTAATAAATAATATT
7298433 ATATT
1 ATATT
7298438 TTTATCAAAT
Statistics
Matches: 24, Mismatches: 0, Indels: 5
0.83 0.00 0.17
Matches are distributed among these distances:
21 7 0.29
22 17 0.71
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (22 bp):
ATATTAATTAATAAATAATATT
Found at i:7298420 original size:26 final size:25
Alignment explanation
Indices: 7298351--7298423 Score: 65
Period size: 32 Copynumber: 2.6 Consensus size: 25
7298341 GCATAATTTA
*
7298351 ATTTATTATTTAATAATAAAAAAATT
1 ATTTATTAATTAAT-ATAAAAAAATT
7298377 ATTTAAATTTAAATATTAATATAAAAATAATT
1 ATTT--A-TT--A-ATTAATATAAAAA-AATT
7298409 ATTTATTAATTAATA
1 ATTTATTAATTAATA
7298424 AATAATATTA
Statistics
Matches: 39, Mismatches: 1, Indels: 14
0.72 0.02 0.26
Matches are distributed among these distances:
26 11 0.28
27 1 0.03
28 1 0.03
29 4 0.10
30 1 0.03
31 8 0.21
32 13 0.33
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (25 bp):
ATTTATTAATTAATATAAAAAAATT
Found at i:7298586 original size:11 final size:11
Alignment explanation
Indices: 7298572--7298598 Score: 54
Period size: 11 Copynumber: 2.5 Consensus size: 11
7298562 TATTATATTA
7298572 TATTTTTAATT
1 TATTTTTAATT
7298583 TATTTTTAATT
1 TATTTTTAATT
7298594 TATTT
1 TATTT
7298599 AAGATAATAT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 16 1.00
ACGTcount: A:0.26, C:0.00, G:0.00, T:0.74
Consensus pattern (11 bp):
TATTTTTAATT
Found at i:7299696 original size:12 final size:12
Alignment explanation
Indices: 7299673--7299706 Score: 50
Period size: 12 Copynumber: 2.8 Consensus size: 12
7299663 CCCCCCCAAA
7299673 AAAAAGAGAAAAT
1 AAAAA-AGAAAAT
*
7299686 TAAAAAGAAAAT
1 AAAAAAGAAAAT
7299698 AAAAAAGAA
1 AAAAAAGAA
7299707 CTAGAATTTT
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
12 15 0.79
13 4 0.21
ACGTcount: A:0.79, C:0.00, G:0.12, T:0.09
Consensus pattern (12 bp):
AAAAAAGAAAAT
Found at i:7300234 original size:28 final size:28
Alignment explanation
Indices: 7300193--7300255 Score: 74
Period size: 28 Copynumber: 2.3 Consensus size: 28
7300183 AATCATATAT
*
7300193 TAATT-ATTATTTATTAAATCAAATACA
1 TAATTAATTAATTATTAAATCAAATACA
* **
7300220 TAATTAATTAATTATTATATTTAATACA
1 TAATTAATTAATTATTAAATCAAATACA
*
7300248 TATTTAAT
1 TAATTAAT
7300256 ATTGATTTTA
Statistics
Matches: 30, Mismatches: 5, Indels: 1
0.83 0.14 0.03
Matches are distributed among these distances:
27 5 0.17
28 25 0.83
ACGTcount: A:0.46, C:0.05, G:0.00, T:0.49
Consensus pattern (28 bp):
TAATTAATTAATTATTAAATCAAATACA
Found at i:7316640 original size:23 final size:23
Alignment explanation
Indices: 7316594--7316636 Score: 61
Period size: 22 Copynumber: 1.9 Consensus size: 23
7316584 TAAAAAAATG
*
7316594 ATTTATTAAGATTTAAATTTTAA
1 ATTTATTAAGATATAAATTTTAA
*
7316617 ATTTATTAA-ATATAACTTTT
1 ATTTATTAAGATATAAATTTT
7316637 TAAAAATAAA
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
22 9 0.50
23 9 0.50
ACGTcount: A:0.42, C:0.02, G:0.02, T:0.53
Consensus pattern (23 bp):
ATTTATTAAGATATAAATTTTAA
Found at i:7317198 original size:2 final size:2
Alignment explanation
Indices: 7317191--7317224 Score: 68
Period size: 2 Copynumber: 17.0 Consensus size: 2
7317181 TGGCTACCTT
7317191 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
7317225 GTATGTTTGT
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 32 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:7325006 original size:4 final size:4
Alignment explanation
Indices: 7324997--7325021 Score: 50
Period size: 4 Copynumber: 6.2 Consensus size: 4
7324987 TTTAATATAA
7324997 AAAT AAAT AAAT AAAT AAAT AAAT A
1 AAAT AAAT AAAT AAAT AAAT AAAT A
7325022 GAAGGATAGT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 21 1.00
ACGTcount: A:0.76, C:0.00, G:0.00, T:0.24
Consensus pattern (4 bp):
AAAT
Found at i:7325267 original size:2 final size:2
Alignment explanation
Indices: 7325260--7325295 Score: 72
Period size: 2 Copynumber: 18.0 Consensus size: 2
7325250 GTAGGCATGC
7325260 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
7325296 TTCTAAGCTA
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 34 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:7325596 original size:26 final size:27
Alignment explanation
Indices: 7325544--7325610 Score: 75
Period size: 26 Copynumber: 2.4 Consensus size: 27
7325534 CAAAATTTAC
*
7325544 ATAATATAAATATTTATATATTAAAAT
1 ATAATATAAATATTAATATATTAAAAT
*
7325571 -TAATATAAATATATAATAT-TTTAAAT
1 ATAATATAAATAT-TAATATATTAAAAT
7325597 ATAATTATGAAATA
1 ATAA-TAT-AAATA
7325611 AAAATAATAC
Statistics
Matches: 34, Mismatches: 2, Indels: 6
0.81 0.05 0.14
Matches are distributed among these distances:
26 18 0.53
27 8 0.24
28 3 0.09
29 5 0.15
ACGTcount: A:0.55, C:0.00, G:0.01, T:0.43
Consensus pattern (27 bp):
ATAATATAAATATTAATATATTAAAAT
Found at i:7325755 original size:2 final size:2
Alignment explanation
Indices: 7325748--7325787 Score: 80
Period size: 2 Copynumber: 20.0 Consensus size: 2
7325738 TTTGTTTTGT
7325748 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
7325788 AAAGATAATT
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 38 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:7325992 original size:7 final size:7
Alignment explanation
Indices: 7325977--7326010 Score: 50
Period size: 7 Copynumber: 4.7 Consensus size: 7
7325967 GAGAGAGGTT
7325977 AAATATTA
1 AAAT-TTA
*
7325985 AACTTTA
1 AAATTTA
7325992 AAATTTA
1 AAATTTA
7325999 AAATTTA
1 AAATTTA
7326006 AAATT
1 AAATT
7326011 AAATACTATA
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
7 21 0.88
8 3 0.12
ACGTcount: A:0.56, C:0.03, G:0.00, T:0.41
Consensus pattern (7 bp):
AAATTTA
Found at i:7327152 original size:14 final size:14
Alignment explanation
Indices: 7327133--7327236 Score: 53
Period size: 14 Copynumber: 7.6 Consensus size: 14
7327123 TGATGATCGT
7327133 TAAATATAATAATA
1 TAAATATAATAATA
7327147 TAAATA-AAGTAAT-
1 TAAATATAA-TAATA
*
7327160 TAAAAAATAATAATA
1 T-AAATATAATAATA
* * *
7327175 TAAAGAT-ATATTT
1 TAAATATAATAATA
*
7327188 TAAA-AT--TTATA
1 TAAATATAATAATA
7327199 TAAATATAA-AATA
1 TAAATATAATAATA
7327212 TTTTAAATATAAT-ATAA
1 ---TAAATATAATAAT-A
7327229 TAAATATA
1 TAAATATA
7327237 TAAATATATA
Statistics
Matches: 70, Mismatches: 8, Indels: 24
0.69 0.08 0.24
Matches are distributed among these distances:
11 6 0.09
12 4 0.06
13 14 0.20
14 31 0.44
15 3 0.04
16 11 0.16
17 1 0.01
ACGTcount: A:0.61, C:0.00, G:0.02, T:0.38
Consensus pattern (14 bp):
TAAATATAATAATA
Found at i:7327212 original size:27 final size:31
Alignment explanation
Indices: 7327182--7327243 Score: 87
Period size: 27 Copynumber: 2.1 Consensus size: 31
7327172 ATATAAAGAT
*
7327182 ATATTTTAAA-AT-TTAT-ATAAATATA-AA
1 ATATTTTAAATATAATATAATAAATATATAA
7327209 ATATTTTAAATATAATATAATAAATATATAA
1 ATATTTTAAATATAATATAATAAATATATAA
7327240 ATAT
1 ATAT
7327244 ATAAGTATAT
Statistics
Matches: 30, Mismatches: 1, Indels: 4
0.86 0.03 0.11
Matches are distributed among these distances:
27 10 0.33
28 2 0.07
29 3 0.10
30 9 0.30
31 6 0.20
ACGTcount: A:0.56, C:0.00, G:0.00, T:0.44
Consensus pattern (31 bp):
ATATTTTAAATATAATATAATAAATATATAA
Found at i:7327253 original size:10 final size:8
Alignment explanation
Indices: 7327195--7327253 Score: 61
Period size: 8 Copynumber: 7.6 Consensus size: 8
7327185 TTTTAAAATT
7327195 TATATAAA
1 TATATAAA
7327203 TATA-AAA
1 TATATAAA
* *
7327210 TATTTTAA
1 TATATAAA
7327218 -ATAT-AA
1 TATATAAA
7327224 TATAATAAA
1 TAT-ATAAA
7327233 TATATAAA
1 TATATAAA
*
7327241 TATATAAG
1 TATATAAA
7327249 TATAT
1 TATAT
7327254 GAAGAATTCA
Statistics
Matches: 43, Mismatches: 4, Indels: 8
0.78 0.07 0.15
Matches are distributed among these distances:
6 2 0.05
7 11 0.26
8 25 0.58
9 5 0.12
ACGTcount: A:0.58, C:0.00, G:0.02, T:0.41
Consensus pattern (8 bp):
TATATAAA
Found at i:7327647 original size:75 final size:75
Alignment explanation
Indices: 7327465--7327693 Score: 291
Period size: 75 Copynumber: 3.0 Consensus size: 75
7327455 ACTCCTTTGG
* * *
7327465 CCCCCATCTTTGCATTATCAATGGCATAAATAAACAACTGTTT-GGGTCACTCTAAATTTTATGA
1 CCCCCAT-TTTGCATTATCAATGGCAT-AA-AAACAAGTGTTTGGGGTCTCTCTAAATTTGATG-
7327529 AAATCTCTTGAAATT
62 AAATCTCTTGAAA-T
** * *
7327544 CCCAAATTTTGCATTATCAATGGGATAAAAACTAGTGTTTGGGGTCTCTCTAAATTTGATGAAAT
1 CCCCCATTTTGCATTATCAATGGCATAAAAACAAGTGTTTGGGGTCTCTCTAAATTTGATGAAAT
7327609 CTCTTGAAAT
66 CTCTTGAAAT
* * * *
7327619 CCCCCATTTTGTATTATCAATGGCATAAAAACAAGTTTTTGGGGTCTCCCTAAATTTTG-TGTAA
1 CCCCCATTTTGCATTATCAATGGCATAAAAACAAGTGTTTGGGGTCTCTCTAAA-TTTGATGAAA
7327683 TCTCTTGAAAT
65 TCTCTTGAAAT
7327694 TCTCTCACAT
Statistics
Matches: 133, Mismatches: 15, Indels: 8
0.85 0.10 0.05
Matches are distributed among these distances:
75 63 0.47
76 27 0.20
77 20 0.15
78 18 0.14
79 5 0.04
ACGTcount: A:0.31, C:0.18, G:0.14, T:0.37
Consensus pattern (75 bp):
CCCCCATTTTGCATTATCAATGGCATAAAAACAAGTGTTTGGGGTCTCTCTAAATTTGATGAAAT
CTCTTGAAAT
Found at i:7329491 original size:21 final size:22
Alignment explanation
Indices: 7329441--7329497 Score: 64
Period size: 21 Copynumber: 2.6 Consensus size: 22
7329431 TTTAAATTTT
*
7329441 TTTATATTTTTATATATTTAAA
1 TTTATATATTTATATATTTAAA
*
7329463 -ATATTATATTT-TATATTTAAA
1 TTTA-TATATTTATATATTTAAA
*
7329484 TTTATATATATATA
1 TTTATATATTTATA
7329498 ATAAATATAT
Statistics
Matches: 28, Mismatches: 4, Indels: 6
0.74 0.11 0.16
Matches are distributed among these distances:
21 18 0.64
22 10 0.36
ACGTcount: A:0.40, C:0.00, G:0.00, T:0.60
Consensus pattern (22 bp):
TTTATATATTTATATATTTAAA
Found at i:7330904 original size:17 final size:17
Alignment explanation
Indices: 7330828--7330911 Score: 57
Period size: 17 Copynumber: 4.9 Consensus size: 17
7330818 TTTACTAAAA
*
7330828 TTTAAAAAT-AATTAAT
1 TTTAAAATTAAATTAAT
*
7330844 TTTAAATTTTAAA-TAAT
1 TTTAAA-ATTAAATTAAT
* * * *
7330861 TTAAAAACTTAACTCAAA
1 TTTAAAA-TTAAATTAAT
*
7330879 ATT-AAATTAAATTAAT
1 TTTAAAATTAAATTAAT
7330895 TTTAAAATTAAAATTAA
1 TTTAAAATT-AAATTAA
7330912 CTTATTCAAT
Statistics
Matches: 49, Mismatches: 13, Indels: 10
0.68 0.18 0.14
Matches are distributed among these distances:
16 15 0.31
17 22 0.45
18 12 0.24
ACGTcount: A:0.55, C:0.04, G:0.00, T:0.42
Consensus pattern (17 bp):
TTTAAAATTAAATTAAT
Found at i:7331406 original size:3 final size:3
Alignment explanation
Indices: 7331398--7331443 Score: 92
Period size: 3 Copynumber: 15.3 Consensus size: 3
7331388 TATCATGTTG
7331398 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT T
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT T
7331444 GTCTTTGGTG
Statistics
Matches: 43, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 43 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (3 bp):
TAT
Found at i:7331634 original size:2 final size:2
Alignment explanation
Indices: 7331627--7331659 Score: 66
Period size: 2 Copynumber: 16.5 Consensus size: 2
7331617 TTAAACCTAC
7331627 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
7331660 AACACTACAC
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 31 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:7331817 original size:16 final size:15
Alignment explanation
Indices: 7331769--7331817 Score: 55
Period size: 16 Copynumber: 3.1 Consensus size: 15
7331759 TTTATAATTA
7331769 AATTATATAAATATTTT
1 AATTA-ATAAATA-TTT
7331786 AATTAATAAATA-TT
1 AATTAATAAATATTT
*
7331800 AATTCAATTAATATTT
1 AATT-AATAAATATTT
7331816 AA
1 AA
7331818 ATAACTCAAA
Statistics
Matches: 29, Mismatches: 1, Indels: 5
0.83 0.03 0.14
Matches are distributed among these distances:
14 6 0.21
15 7 0.24
16 11 0.38
17 5 0.17
ACGTcount: A:0.51, C:0.02, G:0.00, T:0.47
Consensus pattern (15 bp):
AATTAATAAATATTT
Found at i:7331856 original size:40 final size:41
Alignment explanation
Indices: 7331786--7331862 Score: 95
Period size: 40 Copynumber: 1.9 Consensus size: 41
7331776 TAAATATTTT
* *
7331786 AATTAATAAATATTAATTCAATTAATATTTAA-ATAACTCA
1 AATTAAAAAATATTAATTAAATTAATATTTAATATAACTCA
* *
7331826 AATTAAAAAATATTTATTTAAATTTA-ATTTAATATAA
1 AATTAAAAAATA-TTAATTAAATTAATATTTAATATAA
7331863 ATTAAATAAA
Statistics
Matches: 31, Mismatches: 4, Indels: 3
0.82 0.11 0.08
Matches are distributed among these distances:
40 17 0.55
41 14 0.45
ACGTcount: A:0.53, C:0.04, G:0.00, T:0.43
Consensus pattern (41 bp):
AATTAAAAAATATTAATTAAATTAATATTTAATATAACTCA
Found at i:7331899 original size:2 final size:2
Alignment explanation
Indices: 7331892--7331920 Score: 58
Period size: 2 Copynumber: 14.5 Consensus size: 2
7331882 CTCTAAACAC
7331892 AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
7331921 ACAGTATTAT
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:7332261 original size:11 final size:12
Alignment explanation
Indices: 7332245--7332277 Score: 50
Period size: 11 Copynumber: 2.8 Consensus size: 12
7332235 TTATATTTAT
7332245 TATTAAATAT-A
1 TATTAAATATAA
7332256 TATTAAATATAAA
1 TATTAAATAT-AA
7332269 TATTAAATA
1 TATTAAATA
7332278 AAAATTTTGA
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
11 10 0.50
13 10 0.50
ACGTcount: A:0.58, C:0.00, G:0.00, T:0.42
Consensus pattern (12 bp):
TATTAAATATAA
Found at i:7332273 original size:13 final size:13
Alignment explanation
Indices: 7332245--7332282 Score: 53
Period size: 13 Copynumber: 3.1 Consensus size: 13
7332235 TTATATTTAT
7332245 TATTAAATAT--A
1 TATTAAATATAAA
7332256 TATTAAATATAAA
1 TATTAAATATAAA
*
7332269 TATTAAATAAAAA
1 TATTAAATATAAA
7332282 T
1 T
7332283 TTTGATAACA
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
11 10 0.42
13 14 0.58
ACGTcount: A:0.61, C:0.00, G:0.00, T:0.39
Consensus pattern (13 bp):
TATTAAATATAAA
Found at i:7334059 original size:14 final size:14
Alignment explanation
Indices: 7334023--7334065 Score: 52
Period size: 14 Copynumber: 3.1 Consensus size: 14
7334013 TTTTTATATA
7334023 TATTTAAATATAAT
1 TATTTAAATATAAT
**
7334037 TATAAAAATATAAT
1 TATTTAAATATAAT
*
7334051 TTTTTAAATA-AAT
1 TATTTAAATATAAT
7334064 TA
1 TA
7334066 AAAAAATTAA
Statistics
Matches: 23, Mismatches: 6, Indels: 1
0.77 0.20 0.03
Matches are distributed among these distances:
13 4 0.17
14 19 0.83
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (14 bp):
TATTTAAATATAAT
Found at i:7338127 original size:32 final size:32
Alignment explanation
Indices: 7338086--7338151 Score: 123
Period size: 32 Copynumber: 2.1 Consensus size: 32
7338076 AAATTAATAC
7338086 TTAATCTACATTTTAATCATATTAAAACTTAT
1 TTAATCTACATTTTAATCATATTAAAACTTAT
*
7338118 TTAATCTACATTTTAATCATATTTAAACTTAT
1 TTAATCTACATTTTAATCATATTAAAACTTAT
7338150 TT
1 TT
7338152 TTACTAGGTT
Statistics
Matches: 33, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
32 33 1.00
ACGTcount: A:0.38, C:0.12, G:0.00, T:0.50
Consensus pattern (32 bp):
TTAATCTACATTTTAATCATATTAAAACTTAT
Found at i:7347817 original size:21 final size:21
Alignment explanation
Indices: 7347793--7347843 Score: 59
Period size: 21 Copynumber: 2.4 Consensus size: 21
7347783 TTAATTTAAC
7347793 TTTTAATTTTTAATAAAT-TTT
1 TTTTAATTTTT-ATAAATATTT
*
7347814 TTTTAATATTTTTTAAATATTT
1 TTTTAAT-TTTTATAAATATTT
*
7347836 TTATAATT
1 TTTTAATT
7347844 AAAAACTTTT
Statistics
Matches: 26, Mismatches: 2, Indels: 4
0.81 0.06 0.12
Matches are distributed among these distances:
21 13 0.50
22 13 0.50
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (21 bp):
TTTTAATTTTTATAAATATTT
Found at i:7347926 original size:22 final size:22
Alignment explanation
Indices: 7347887--7347941 Score: 60
Period size: 22 Copynumber: 2.5 Consensus size: 22
7347877 TTGAGTTTAC
7347887 ATTTTGATTTATTTTTTA-AATAA
1 ATTTT-ATTTATTTTTTATAAT-A
7347910 ATTTTATTT-TTTATTTATAATA
1 ATTTTATTTATTT-TTTATAATA
*
7347932 TTTTTATTTA
1 ATTTTATTTA
7347942 ACTCCTTTTA
Statistics
Matches: 28, Mismatches: 1, Indels: 6
0.80 0.03 0.17
Matches are distributed among these distances:
21 3 0.11
22 17 0.61
23 8 0.29
ACGTcount: A:0.31, C:0.00, G:0.02, T:0.67
Consensus pattern (22 bp):
ATTTTATTTATTTTTTATAATA
Found at i:7348289 original size:22 final size:21
Alignment explanation
Indices: 7348237--7348289 Score: 52
Period size: 22 Copynumber: 2.4 Consensus size: 21
7348227 AATAATTTCT
* * *
7348237 TAATTTAATATAATTAATTTA
1 TAATTTTATATAATAAATGTA
*
7348258 TATTTATTATATAATAAATGTA
1 TAATT-TTATATAATAAATGTA
7348280 TAAATTTTAT
1 T-AATTTTAT
7348290 TATTATATAA
Statistics
Matches: 25, Mismatches: 5, Indels: 3
0.76 0.15 0.09
Matches are distributed among these distances:
21 4 0.16
22 18 0.72
23 3 0.12
ACGTcount: A:0.45, C:0.00, G:0.02, T:0.53
Consensus pattern (21 bp):
TAATTTTATATAATAAATGTA
Found at i:7348307 original size:26 final size:29
Alignment explanation
Indices: 7348252--7348311 Score: 81
Period size: 28 Copynumber: 2.1 Consensus size: 29
7348242 TAATATAATT
7348252 AATTTATATTTATTATATAATAAATGTATA
1 AATTTATATTTATTATATAATAAA-GTATA
*
7348282 AATTT-TA-TTATTATATAATTAA-TATA
1 AATTTATATTTATTATATAATAAAGTATA
7348308 AATT
1 AATT
7348312 AATTAAAAAT
Statistics
Matches: 29, Mismatches: 1, Indels: 4
0.85 0.03 0.12
Matches are distributed among these distances:
26 8 0.28
28 14 0.48
29 2 0.07
30 5 0.17
ACGTcount: A:0.47, C:0.00, G:0.02, T:0.52
Consensus pattern (29 bp):
AATTTATATTTATTATATAATAAAGTATA
Found at i:7348978 original size:17 final size:18
Alignment explanation
Indices: 7348953--7348995 Score: 52
Period size: 17 Copynumber: 2.4 Consensus size: 18
7348943 TAATTTAAAA
*
7348953 AATAAAAATGATAA-ATT
1 AATATAAATGATAATATT
*
7348970 AATATAAATTATAATATT
1 AATATAAATGATAATATT
*
7348988 ATTATAAA
1 AATATAAA
7348996 ATTTATTTTA
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
17 12 0.55
18 10 0.45
ACGTcount: A:0.60, C:0.00, G:0.02, T:0.37
Consensus pattern (18 bp):
AATATAAATGATAATATT
Found at i:7350913 original size:19 final size:19
Alignment explanation
Indices: 7350866--7350913 Score: 51
Period size: 19 Copynumber: 2.5 Consensus size: 19
7350856 AATAAAGAAA
*
7350866 ACTTTTTTTTACTTACCTT
1 ACTTTTCTTTACTTACCTT
* * *
7350885 AATTTACTTTACTTTCCTT
1 ACTTTTCTTTACTTACCTT
*
7350904 TCTTTTCTTT
1 ACTTTTCTTT
7350914 TTATTCACTT
Statistics
Matches: 22, Mismatches: 7, Indels: 0
0.76 0.24 0.00
Matches are distributed among these distances:
19 22 1.00
ACGTcount: A:0.15, C:0.21, G:0.00, T:0.65
Consensus pattern (19 bp):
ACTTTTCTTTACTTACCTT
Found at i:7350993 original size:23 final size:24
Alignment explanation
Indices: 7350951--7351000 Score: 66
Period size: 23 Copynumber: 2.1 Consensus size: 24
7350941 AGAATTAAAA
* *
7350951 AAATAAATTTGCTAATTTATA-AG
1 AAATAAATTTACTAACTTATAGAG
*
7350974 AAATAAATTTATTAACTTATAGAG
1 AAATAAATTTACTAACTTATAGAG
7350998 AAA
1 AAA
7351001 AAACTAAATA
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
23 18 0.78
24 5 0.22
ACGTcount: A:0.52, C:0.04, G:0.08, T:0.36
Consensus pattern (24 bp):
AAATAAATTTACTAACTTATAGAG
Found at i:7351249 original size:31 final size:29
Alignment explanation
Indices: 7351205--7351268 Score: 74
Period size: 31 Copynumber: 2.1 Consensus size: 29
7351195 AGAGATAGAA
* * *
7351205 TTAAAAAAATAAATTTAATAATTATATAT
1 TTAAAAAAATAAATTAAAAAAATATATAT
*
7351234 TTAAAAAAATTTAAATTAAAAAAATATATTT
1 TTAAAAAAA--TAAATTAAAAAAATATATAT
7351265 TTAA
1 TTAA
7351269 TAGCAAAACA
Statistics
Matches: 29, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
29 9 0.31
31 20 0.69
ACGTcount: A:0.59, C:0.00, G:0.00, T:0.41
Consensus pattern (29 bp):
TTAAAAAAATAAATTAAAAAAATATATAT
Found at i:7351336 original size:33 final size:31
Alignment explanation
Indices: 7351273--7351334 Score: 90
Period size: 32 Copynumber: 2.0 Consensus size: 31
7351263 TTTTAATAGC
7351273 AAAACAAGAAAAAACTTTCATAAAATTTTTA
1 AAAACAAGAAAAAACTTTCATAAAATTTTTA
*
7351304 AAAACAATGTAAAAAACTTT-ATTAAATTTTT
1 AAAACAA-G-AAAAAACTTTCATAAAATTTTT
7351335 TATTTATCAT
Statistics
Matches: 28, Mismatches: 1, Indels: 3
0.88 0.03 0.09
Matches are distributed among these distances:
31 7 0.25
32 11 0.39
33 10 0.36
ACGTcount: A:0.55, C:0.08, G:0.03, T:0.34
Consensus pattern (31 bp):
AAAACAAGAAAAAACTTTCATAAAATTTTTA
Found at i:7351361 original size:20 final size:21
Alignment explanation
Indices: 7351323--7351361 Score: 53
Period size: 20 Copynumber: 1.9 Consensus size: 21
7351313 TAAAAAACTT
* *
7351323 TATTAAATTTTTTATTTATCA
1 TATTAAATTTATTAGTTATCA
7351344 TATT-AATTTATTAGTTAT
1 TATTAAATTTATTAGTTAT
7351362 GTATTTTTAT
Statistics
Matches: 16, Mismatches: 2, Indels: 1
0.84 0.11 0.05
Matches are distributed among these distances:
20 12 0.75
21 4 0.25
ACGTcount: A:0.33, C:0.03, G:0.03, T:0.62
Consensus pattern (21 bp):
TATTAAATTTATTAGTTATCA
Found at i:7352085 original size:14 final size:13
Alignment explanation
Indices: 7352066--7352114 Score: 62
Period size: 14 Copynumber: 3.6 Consensus size: 13
7352056 TTTAAAATTT
7352066 AATTTAATTTATTA
1 AATTTAATTT-TTA
*
7352080 AATTTAAATTTTA
1 AATTTAATTTTTA
*
7352093 AATATTATTTTTTA
1 AAT-TTAATTTTTA
7352107 AATTTAAT
1 AATTTAAT
7352115 CTGATTTAAT
Statistics
Matches: 30, Mismatches: 4, Indels: 3
0.81 0.11 0.08
Matches are distributed among these distances:
13 10 0.33
14 20 0.67
ACGTcount: A:0.43, C:0.00, G:0.00, T:0.57
Consensus pattern (13 bp):
AATTTAATTTTTA
Found at i:7352110 original size:27 final size:26
Alignment explanation
Indices: 7352056--7352113 Score: 73
Period size: 27 Copynumber: 2.2 Consensus size: 26
7352046 TAAAAATTTG
7352056 TTTAAAATTTAATTTAATTTATTAAA
1 TTTAAAATTTAATTTAATTTATTAAA
* *
7352082 TTTAAATTTTAAATATT-ATTTTTTAAA
1 TTTAAAATTT-AAT-TTAATTTATTAAA
7352109 TTTAA
1 TTTAA
7352114 TCTGATTTAA
Statistics
Matches: 28, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
26 9 0.32
27 17 0.61
28 2 0.07
ACGTcount: A:0.43, C:0.00, G:0.00, T:0.57
Consensus pattern (26 bp):
TTTAAAATTTAATTTAATTTATTAAA
Found at i:7352111 original size:41 final size:41
Alignment explanation
Indices: 7352066--7352148 Score: 107
Period size: 41 Copynumber: 2.0 Consensus size: 41
7352056 TTTAAAATTT
* *
7352066 AATTTAAT-TTATTAAATTTA-AATTTTAAATATTATTTTTTA
1 AATTTAATCTGATTAAA-TTACAATCTT-AATATTATTTTTTA
*
7352107 AATTTAATCTGATTTAATTACAATCTTAATATTATTTTTTA
1 AATTTAATCTGATTAAATTACAATCTTAATATTATTTTTTA
7352148 A
1 A
7352149 TTAAAATCTT
Statistics
Matches: 37, Mismatches: 3, Indels: 4
0.84 0.07 0.09
Matches are distributed among these distances:
41 26 0.70
42 11 0.30
ACGTcount: A:0.40, C:0.04, G:0.01, T:0.55
Consensus pattern (41 bp):
AATTTAATCTGATTAAATTACAATCTTAATATTATTTTTTA
Found at i:7353599 original size:19 final size:17
Alignment explanation
Indices: 7353575--7353622 Score: 62
Period size: 19 Copynumber: 2.8 Consensus size: 17
7353565 TTCGATAATC
7353575 TATGTATTTATGTTATGAT
1 TATGTATTT-TGTTATG-T
7353594 TATGTATTTTGTTATGT
1 TATGTATTTTGTTATGT
*
7353611 TAT-AATTTTGTT
1 TATGTATTTTGTT
7353623 TAAGATATTT
Statistics
Matches: 28, Mismatches: 1, Indels: 3
0.88 0.03 0.09
Matches are distributed among these distances:
16 8 0.29
17 4 0.14
18 7 0.25
19 9 0.32
ACGTcount: A:0.23, C:0.00, G:0.15, T:0.62
Consensus pattern (17 bp):
TATGTATTTTGTTATGT
Found at i:7360048 original size:2 final size:2
Alignment explanation
Indices: 7360041--7360089 Score: 91
Period size: 2 Copynumber: 25.0 Consensus size: 2
7360031 CACTAAAAGA
7360041 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
7360083 AT A- AT AT
1 AT AT AT AT
7360090 GTTGAGGTTA
Statistics
Matches: 46, Mismatches: 0, Indels: 2
0.96 0.00 0.04
Matches are distributed among these distances:
1 1 0.02
2 45 0.98
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (2 bp):
AT
Found at i:7365187 original size:42 final size:46
Alignment explanation
Indices: 7365111--7365195 Score: 124
Period size: 42 Copynumber: 1.9 Consensus size: 46
7365101 TTCACTTATT
7365111 TAAAAATAAAATATTTATTTTTATATTATAATAATTAAAAATTAAA
1 TAAAAATAAAATATTTATTTTTATATTATAATAATTAAAAATTAAA
* *
7365157 TAAAAATATAAT-TTTA-TTTTAT-TTA-AATAATTTAAAATT
1 TAAAAATAAAATATTTATTTTTATATTATAATAATTAAAAATT
7365196 TTAAACTTAT
Statistics
Matches: 37, Mismatches: 2, Indels: 4
0.86 0.05 0.09
Matches are distributed among these distances:
42 13 0.35
43 3 0.08
44 6 0.16
45 4 0.11
46 11 0.30
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (46 bp):
TAAAAATAAAATATTTATTTTTATATTATAATAATTAAAAATTAAA
Found at i:7368058 original size:25 final size:24
Alignment explanation
Indices: 7368028--7368083 Score: 62
Period size: 25 Copynumber: 2.3 Consensus size: 24
7368018 ATGAATATCA
7368028 AATATTTAT-ATATATTTTAAATAT
1 AATATTTATAAT-TATTTTAAATAT
* *
7368052 GAATATTTTTAATTTTTTTAAATAT
1 -AATATTTATAATTATTTTAAATAT
7368077 -ATATTTA
1 AATATTTA
7368084 ATTTTAAAAA
Statistics
Matches: 27, Mismatches: 3, Indels: 4
0.79 0.09 0.12
Matches are distributed among these distances:
23 6 0.22
25 19 0.70
26 2 0.07
ACGTcount: A:0.41, C:0.00, G:0.02, T:0.57
Consensus pattern (24 bp):
AATATTTATAATTATTTTAAATAT
Found at i:7368521 original size:15 final size:14
Alignment explanation
Indices: 7368497--7368536 Score: 62
Period size: 15 Copynumber: 2.7 Consensus size: 14
7368487 ATAAATAATT
7368497 TAATAAAAATAAAAA
1 TAAT-AAAATAAAAA
7368512 TAATACAAATAAAAA
1 TAATA-AAATAAAAA
7368527 TAATAAAATA
1 TAATAAAATA
7368537 TTTTTCATAA
Statistics
Matches: 24, Mismatches: 0, Indels: 3
0.89 0.00 0.11
Matches are distributed among these distances:
14 6 0.25
15 18 0.75
ACGTcount: A:0.75, C:0.03, G:0.00, T:0.23
Consensus pattern (14 bp):
TAATAAAATAAAAA
Found at i:7370323 original size:23 final size:23
Alignment explanation
Indices: 7370295--7370349 Score: 101
Period size: 23 Copynumber: 2.4 Consensus size: 23
7370285 TATATAGATT
7370295 TATAATAATATTATTATATTAAA
1 TATAATAATATTATTATATTAAA
*
7370318 TATAATATTATTATTATATTAAA
1 TATAATAATATTATTATATTAAA
7370341 TATAATAAT
1 TATAATAAT
7370350 TGATAATTTT
Statistics
Matches: 30, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
23 30 1.00
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (23 bp):
TATAATAATATTATTATATTAAA
Found at i:7372249 original size:3 final size:3
Alignment explanation
Indices: 7372241--7372273 Score: 66
Period size: 3 Copynumber: 11.0 Consensus size: 3
7372231 CTGCAAAAAG
7372241 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
7372274 GTTTTGACTT
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 30 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (3 bp):
TAT
Found at i:7373653 original size:22 final size:23
Alignment explanation
Indices: 7373628--7373673 Score: 58
Period size: 23 Copynumber: 2.0 Consensus size: 23
7373618 TCAATTTTTA
* *
7373628 TAATTTATAT-TTATAAATTATG
1 TAATTTATATCTCAAAAATTATG
*
7373650 TAATTTTTATCTCAAAAATTATG
1 TAATTTATATCTCAAAAATTATG
7373673 T
1 T
7373674 TGAGTTATTT
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
22 9 0.45
23 11 0.55
ACGTcount: A:0.39, C:0.04, G:0.04, T:0.52
Consensus pattern (23 bp):
TAATTTATATCTCAAAAATTATG
Found at i:7374390 original size:11 final size:11
Alignment explanation
Indices: 7374374--7374398 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
7374364 TACCCAAACA
7374374 TAAGTTGCTGC
1 TAAGTTGCTGC
7374385 TAAGTTGCTGC
1 TAAGTTGCTGC
7374396 TAA
1 TAA
7374399 AGCATATGAT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.24, C:0.16, G:0.24, T:0.36
Consensus pattern (11 bp):
TAAGTTGCTGC
Found at i:7377552 original size:36 final size:36
Alignment explanation
Indices: 7377512--7377585 Score: 130
Period size: 36 Copynumber: 2.1 Consensus size: 36
7377502 TTCATCATAT
7377512 AATTATCATGAATCTTTAAATTAGGTCAAACAAGCA
1 AATTATCATGAATCTTTAAATTAGGTCAAACAAGCA
* *
7377548 AATTATTATGAATCTTTAAATTAGGTCCAACAAGCA
1 AATTATCATGAATCTTTAAATTAGGTCAAACAAGCA
7377584 AA
1 AA
7377586 GGATATATAC
Statistics
Matches: 36, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
36 36 1.00
ACGTcount: A:0.45, C:0.14, G:0.11, T:0.31
Consensus pattern (36 bp):
AATTATCATGAATCTTTAAATTAGGTCAAACAAGCA
Found at i:7377601 original size:2 final size:2
Alignment explanation
Indices: 7377588--7377630 Score: 59
Period size: 2 Copynumber: 21.0 Consensus size: 2
7377578 CAAGCAAAGG
* *
7377588 AT AT AT AC AT AT AT AT AC AT AT AT AT AT ACT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT A-T AT AT AT AT AT AT
7377631 GTCGCATTCC
Statistics
Matches: 36, Mismatches: 4, Indels: 2
0.86 0.10 0.05
Matches are distributed among these distances:
2 34 0.94
3 2 0.06
ACGTcount: A:0.49, C:0.07, G:0.00, T:0.44
Consensus pattern (2 bp):
AT
Found at i:7378802 original size:2 final size:2
Alignment explanation
Indices: 7378795--7378821 Score: 54
Period size: 2 Copynumber: 13.5 Consensus size: 2
7378785 TTCACTTGTG
7378795 TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA T
7378822 TACAAGTTTA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 25 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:7381496 original size:2 final size:2
Alignment explanation
Indices: 7381489--7381534 Score: 74
Period size: 2 Copynumber: 23.0 Consensus size: 2
7381479 CAAAGAACTT
* *
7381489 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TG TA TA TT
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
7381531 TA TA
1 TA TA
7381535 AAGGAAGTCA
Statistics
Matches: 40, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
2 40 1.00
ACGTcount: A:0.46, C:0.00, G:0.02, T:0.52
Consensus pattern (2 bp):
TA
Found at i:7381899 original size:24 final size:24
Alignment explanation
Indices: 7381868--7381917 Score: 73
Period size: 24 Copynumber: 2.1 Consensus size: 24
7381858 AAACCTCAAT
*
7381868 TATATATACATACATATATATATA
1 TATATATACATACATACATATATA
* *
7381892 TATATATAGATGCATACATATATA
1 TATATATACATACATACATATATA
7381916 TA
1 TA
7381918 ATCTTACTAA
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
24 23 1.00
ACGTcount: A:0.48, C:0.08, G:0.04, T:0.40
Consensus pattern (24 bp):
TATATATACATACATACATATATA
Found at i:7383622 original size:2 final size:2
Alignment explanation
Indices: 7383615--7383655 Score: 55
Period size: 2 Copynumber: 20.5 Consensus size: 2
7383605 TTAAGATTTA
* * *
7383615 AT AT AT AT AT AT AT AT AT GT GT AT AT AT AT AT AT AT TT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
7383656 AATGTGTTTC
Statistics
Matches: 35, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
2 35 1.00
ACGTcount: A:0.44, C:0.00, G:0.05, T:0.51
Consensus pattern (2 bp):
AT
Found at i:7384219 original size:17 final size:17
Alignment explanation
Indices: 7384197--7384229 Score: 66
Period size: 17 Copynumber: 1.9 Consensus size: 17
7384187 CAAAAAACAC
7384197 TCAAATTTACATGTTTA
1 TCAAATTTACATGTTTA
7384214 TCAAATTTACATGTTT
1 TCAAATTTACATGTTT
7384230 TATGTTAAAA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.33, C:0.12, G:0.06, T:0.48
Consensus pattern (17 bp):
TCAAATTTACATGTTTA
Found at i:7386178 original size:15 final size:15
Alignment explanation
Indices: 7386152--7386200 Score: 53
Period size: 15 Copynumber: 3.1 Consensus size: 15
7386142 GTATCAGATA
7386152 AAAATATAAATATTTT
1 AAAAT-TAAATATTTT
* *
7386168 AAAATTAAATATATA
1 AAAATTAAATATTTT
*
7386183 AAAATTATATTATTTT
1 AAAATTA-AATATTTT
7386199 AA
1 AA
7386201 TATATAAAAT
Statistics
Matches: 27, Mismatches: 5, Indels: 2
0.79 0.15 0.06
Matches are distributed among these distances:
15 15 0.56
16 12 0.44
ACGTcount: A:0.57, C:0.00, G:0.00, T:0.43
Consensus pattern (15 bp):
AAAATTAAATATTTT
Found at i:7386216 original size:23 final size:24
Alignment explanation
Indices: 7386171--7386229 Score: 72
Period size: 23 Copynumber: 2.6 Consensus size: 24
7386161 ATATTTTAAA
7386171 ATTA-AATATATAAAAATTATATT
1 ATTATAATATATAAAAATTATATT
*
7386194 ATTTTAATATAT-AAAA-TATTATT
1 ATTATAATATATAAAAATTA-TATT
7386217 ATTATAAT-TATAA
1 ATTATAATATATAA
7386230 TATAATAAAA
Statistics
Matches: 31, Mismatches: 2, Indels: 6
0.79 0.05 0.15
Matches are distributed among these distances:
22 5 0.16
23 19 0.61
24 7 0.23
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (24 bp):
ATTATAATATATAAAAATTATATT
Found at i:7386835 original size:14 final size:14
Alignment explanation
Indices: 7386796--7386835 Score: 55
Period size: 14 Copynumber: 2.8 Consensus size: 14
7386786 AATAGATAAT
7386796 ATTTAATAATTTTAA
1 ATTTAAT-ATTTTAA
7386811 ATTTTAA-ATTTTAA
1 A-TTTAATATTTTAA
7386825 ATTTAATATTT
1 ATTTAATATTT
7386836 ATAATTTTTT
Statistics
Matches: 23, Mismatches: 0, Indels: 5
0.82 0.00 0.18
Matches are distributed among these distances:
13 5 0.22
14 12 0.52
15 1 0.04
16 5 0.22
ACGTcount: A:0.42, C:0.00, G:0.00, T:0.57
Consensus pattern (14 bp):
ATTTAATATTTTAA
Found at i:7386836 original size:7 final size:7
Alignment explanation
Indices: 7386803--7386828 Score: 52
Period size: 7 Copynumber: 3.7 Consensus size: 7
7386793 AATATTTAAT
7386803 AATTTTA
1 AATTTTA
7386810 AATTTTA
1 AATTTTA
7386817 AATTTTA
1 AATTTTA
7386824 AATTT
1 AATTT
7386829 AATATTTATA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 19 1.00
ACGTcount: A:0.42, C:0.00, G:0.00, T:0.58
Consensus pattern (7 bp):
AATTTTA
Found at i:7386861 original size:17 final size:18
Alignment explanation
Indices: 7386834--7386867 Score: 52
Period size: 17 Copynumber: 1.9 Consensus size: 18
7386824 AATTTAATAT
*
7386834 TTATAATTTTTTCACAAG
1 TTATAATTTTTTAACAAG
7386852 TTAT-ATTTTTTAACAA
1 TTATAATTTTTTAACAA
7386868 AAAAATATTA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 11 0.73
18 4 0.27
ACGTcount: A:0.35, C:0.09, G:0.03, T:0.53
Consensus pattern (18 bp):
TTATAATTTTTTAACAAG
Found at i:7390823 original size:26 final size:26
Alignment explanation
Indices: 7390794--7390844 Score: 68
Period size: 26 Copynumber: 2.0 Consensus size: 26
7390784 TATAATTTAA
7390794 TTAAAATATT-ATATATTTATATAATT
1 TTAAAATATTGATA-ATTTATATAATT
* *
7390820 TTAATATATTGATAATTTTTATAAT
1 TTAAAATATTGATAATTTATATAAT
7390845 ATAAATTTTG
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
26 19 0.86
27 3 0.14
ACGTcount: A:0.43, C:0.00, G:0.02, T:0.55
Consensus pattern (26 bp):
TTAAAATATTGATAATTTATATAATT
Found at i:7391501 original size:22 final size:22
Alignment explanation
Indices: 7391475--7391546 Score: 67
Period size: 22 Copynumber: 3.3 Consensus size: 22
7391465 ATGTATTTTT
7391475 ATATTTTATAATAATATTTAAA
1 ATATTTTATAATAATATTTAAA
* * * *
7391497 ATATTCTATATTAATACTTTCAT
1 ATATTTTATAATAATA-TTTAAA
* *
7391520 AT-TTTTAT-ATCATATTTATA
1 ATATTTTATAATAATATTTAAA
7391540 ATATTTT
1 ATATTTT
7391547 TTATATTATA
Statistics
Matches: 38, Mismatches: 10, Indels: 5
0.72 0.19 0.09
Matches are distributed among these distances:
20 5 0.13
21 8 0.21
22 19 0.50
23 6 0.16
ACGTcount: A:0.39, C:0.06, G:0.00, T:0.56
Consensus pattern (22 bp):
ATATTTTATAATAATATTTAAA
Found at i:7391573 original size:25 final size:26
Alignment explanation
Indices: 7391518--7391577 Score: 72
Period size: 25 Copynumber: 2.4 Consensus size: 26
7391508 TAATACTTTC
7391518 ATATTTT-TA-TATCATATTTATAAT
1 ATATTTTATATTATCATATTTATAAT
* * *
7391542 ATTTTTTATATTAT-ATATTTTTATT
1 ATATTTTATATTATCATATTTATAAT
7391567 ATATTTTATAT
1 ATATTTTATAT
7391578 AATTGAATCT
Statistics
Matches: 30, Mismatches: 4, Indels: 3
0.81 0.11 0.08
Matches are distributed among these distances:
24 6 0.20
25 21 0.70
26 3 0.10
ACGTcount: A:0.33, C:0.02, G:0.00, T:0.65
Consensus pattern (26 bp):
ATATTTTATATTATCATATTTATAAT
Found at i:7391939 original size:31 final size:32
Alignment explanation
Indices: 7391903--7391963 Score: 97
Period size: 31 Copynumber: 1.9 Consensus size: 32
7391893 TTAGATTGAT
*
7391903 TTAAAATTTTATATTATTATTTA-AAATAATA
1 TTAAAATTTTATATTAATATTTATAAATAATA
*
7391934 TTAAAATTTTTTATTAATATTTATAAATAA
1 TTAAAATTTTATATTAATATTTATAAATAA
7391964 AAATAAATTT
Statistics
Matches: 27, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
31 21 0.78
32 6 0.22
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (32 bp):
TTAAAATTTTATATTAATATTTATAAATAATA
Found at i:7391972 original size:31 final size:31
Alignment explanation
Indices: 7391904--7391978 Score: 91
Period size: 31 Copynumber: 2.5 Consensus size: 31
7391894 TAGATTGATT
* * *
7391904 TAAAATTTTATATTATTATTTAAAATAATAT
1 TAAAATTTTATATTAATATTTAAAATAAAAA
*
7391935 TAAAATTTTTTATTAATATTTATAAATAAAAA
1 TAAAATTTTATATTAATATTTA-AAATAAAAA
7391967 T-AAA-TTTATATT
1 TAAAATTTTATATT
7391979 TGTTAAACAC
Statistics
Matches: 38, Mismatches: 5, Indels: 3
0.83 0.11 0.07
Matches are distributed among these distances:
30 7 0.18
31 23 0.61
32 8 0.21
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (31 bp):
TAAAATTTTATATTAATATTTAAAATAAAAA
Found at i:7392632 original size:17 final size:17
Alignment explanation
Indices: 7392594--7392646 Score: 61
Period size: 17 Copynumber: 3.0 Consensus size: 17
7392584 ATTTAATATT
*
7392594 TTAAATTTATATTATTTAA
1 TTAAATATATATT-TTT-A
7392613 TTAAATATATATTTTTA
1 TTAAATATATATTTTTA
* *
7392630 TTAAAAATTTATTTTTA
1 TTAAATATATATTTTTA
7392647 AACATTAAAT
Statistics
Matches: 31, Mismatches: 3, Indels: 2
0.86 0.08 0.06
Matches are distributed among these distances:
17 16 0.52
18 3 0.10
19 12 0.39
ACGTcount: A:0.42, C:0.00, G:0.00, T:0.58
Consensus pattern (17 bp):
TTAAATATATATTTTTA
Found at i:7401072 original size:2 final size:2
Alignment explanation
Indices: 7401065--7401101 Score: 74
Period size: 2 Copynumber: 18.5 Consensus size: 2
7401055 AAAGTTTCCT
7401065 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
7401102 TGGTTTGGTT
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 35 1.00
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (2 bp):
TA
Found at i:7401625 original size:17 final size:16
Alignment explanation
Indices: 7401594--7401645 Score: 54
Period size: 17 Copynumber: 3.2 Consensus size: 16
7401584 TTGTATATTC
7401594 ATATTTAA-AATTTTAAT
1 ATATTTAATAA-TTT-AT
7401611 ATATTTAATAATTTAT
1 ATATTTAATAATTTAT
*
7401627 ATTATTTTATAA-TTAT
1 A-TATTTAATAATTTAT
7401643 ATA
1 ATA
7401646 ATATGCATAT
Statistics
Matches: 32, Mismatches: 1, Indels: 6
0.82 0.03 0.15
Matches are distributed among these distances:
15 2 0.06
16 8 0.25
17 20 0.62
18 2 0.06
ACGTcount: A:0.44, C:0.00, G:0.00, T:0.56
Consensus pattern (16 bp):
ATATTTAATAATTTAT
Found at i:7406861 original size:24 final size:25
Alignment explanation
Indices: 7406825--7406874 Score: 59
Period size: 24 Copynumber: 2.0 Consensus size: 25
7406815 TTAAATTATT
7406825 ATTTAAATAATAATAAATT-ATATAA
1 ATTTAAATAATAA-AAATTAATATAA
* *
7406850 ATTT-AATTATAAATATTAATATAA
1 ATTTAAATAATAAAAATTAATATAA
7406874 A
1 A
7406875 AAATAATTTT
Statistics
Matches: 22, Mismatches: 2, Indels: 3
0.81 0.07 0.11
Matches are distributed among these distances:
23 4 0.18
24 14 0.64
25 4 0.18
ACGTcount: A:0.58, C:0.00, G:0.00, T:0.42
Consensus pattern (25 bp):
ATTTAAATAATAAAAATTAATATAA
Found at i:7407491 original size:17 final size:16
Alignment explanation
Indices: 7407455--7407492 Score: 51
Period size: 16 Copynumber: 2.4 Consensus size: 16
7407445 AAAATTATAC
*
7407455 ACTTA-AATTTTTTAA
1 ACTTATAATTTTTAAA
7407470 ACTTATAATTTTTAAA
1 ACTTATAATTTTTAAA
7407486 ACCTTAT
1 A-CTTAT
7407493 TAAAAATATT
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
15 5 0.25
16 10 0.50
17 5 0.25
ACGTcount: A:0.39, C:0.11, G:0.00, T:0.50
Consensus pattern (16 bp):
ACTTATAATTTTTAAA
Found at i:7407788 original size:16 final size:16
Alignment explanation
Indices: 7407767--7407822 Score: 73
Period size: 16 Copynumber: 3.6 Consensus size: 16
7407757 TAAATCAAAT
7407767 AAATATAATAATTAAA
1 AAATATAATAATTAAA
7407783 AAATATATATAA-TAAA
1 AAATATA-ATAATTAAA
*
7407799 AAATA-AA-AATTATA
1 AAATATAATAATTAAA
7407813 AAATATAATA
1 AAATATAATA
7407823 TAAATATGTA
Statistics
Matches: 35, Mismatches: 1, Indels: 8
0.80 0.02 0.18
Matches are distributed among these distances:
13 2 0.06
14 9 0.26
15 3 0.09
16 17 0.49
17 4 0.11
ACGTcount: A:0.70, C:0.00, G:0.00, T:0.30
Consensus pattern (16 bp):
AAATATAATAATTAAA
Found at i:7407812 original size:21 final size:22
Alignment explanation
Indices: 7407781--7407826 Score: 58
Period size: 21 Copynumber: 2.1 Consensus size: 22
7407771 ATAATAATTA
*
7407781 AAAAATATATATAATAAAAAAT
1 AAAAATATATAAAATAAAAAAT
* *
7407803 AAAAAT-TATAAAATATAATAT
1 AAAAATATATAAAATAAAAAAT
7407824 AAA
1 AAA
7407827 TATGTAAATT
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
21 15 0.71
22 6 0.29
ACGTcount: A:0.72, C:0.00, G:0.00, T:0.28
Consensus pattern (22 bp):
AAAAATATATAAAATAAAAAAT
Found at i:7407873 original size:20 final size:19
Alignment explanation
Indices: 7407848--7407899 Score: 54
Period size: 18 Copynumber: 2.7 Consensus size: 19
7407838 ATTAAAATTT
7407848 ATATAATATAAATTATTATA
1 ATATAATATAAATT-TTATA
7407868 ATATAA-A-AATATTTTATA
1 ATATAATATAA-ATTTTATA
*
7407886 TTATATATATAAAT
1 ATATA-ATATAAAT
7407900 AAATAAAAAA
Statistics
Matches: 27, Mismatches: 1, Indels: 8
0.75 0.03 0.22
Matches are distributed among these distances:
18 11 0.41
19 5 0.19
20 9 0.33
21 2 0.07
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (19 bp):
ATATAATATAAATTTTATA
Found at i:7409004 original size:4 final size:4
Alignment explanation
Indices: 7408995--7409024 Score: 51
Period size: 4 Copynumber: 7.5 Consensus size: 4
7408985 ATTTTGGTTA
*
7408995 TTAT TTAT TTAT TTAT TTAT TTAT TGAT TT
1 TTAT TTAT TTAT TTAT TTAT TTAT TTAT TT
7409025 GTTCAAGTTA
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
4 24 1.00
ACGTcount: A:0.23, C:0.00, G:0.03, T:0.73
Consensus pattern (4 bp):
TTAT
Found at i:7409352 original size:2 final size:2
Alignment explanation
Indices: 7409345--7409372 Score: 56
Period size: 2 Copynumber: 14.0 Consensus size: 2
7409335 ACTTGAAAAT
7409345 TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA
7409373 AATTTTAGCA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:7409809 original size:15 final size:15
Alignment explanation
Indices: 7409791--7409853 Score: 81
Period size: 15 Copynumber: 4.0 Consensus size: 15
7409781 AATTATTATA
*
7409791 AAATTAAATTGAAAT
1 AAATTAAATTTAAAT
7409806 AAATTAAATTTAAAT
1 AAATTAAATTTAAAT
*
7409821 AATTTAATATTTAAATT
1 AAATTAA-ATTTAAA-T
7409838 AAATATAAATTTAAAT
1 AAAT-TAAATTTAAAT
7409854 TATTTTTATT
Statistics
Matches: 42, Mismatches: 3, Indels: 5
0.84 0.06 0.10
Matches are distributed among these distances:
15 20 0.48
16 8 0.19
17 11 0.26
18 3 0.07
ACGTcount: A:0.57, C:0.00, G:0.02, T:0.41
Consensus pattern (15 bp):
AAATTAAATTTAAAT
Found at i:7409820 original size:6 final size:6
Alignment explanation
Indices: 7409767--7409854 Score: 57
Period size: 6 Copynumber: 15.3 Consensus size: 6
7409757 GTAAAAAAAT
* *
7409767 TTTAAA -TTAAA TTTAATTA TTATAAA ATTAAA TTGAAA --TAAA -TTAAA
1 TTTAAA TTTAAA TTTAA--A TT-TAAA TTTAAA TTTAAA TTTAAA TTTAAA
*
7409814 TTTAAA --T-AA TTTAATA TTTAAA -TTAAA TATAAA TTTAAA TT
1 TTTAAA TTTAAA TTTAA-A TTTAAA TTTAAA TTTAAA TTTAAA TT
7409855 ATTTTTATTA
Statistics
Matches: 65, Mismatches: 6, Indels: 22
0.70 0.06 0.24
Matches are distributed among these distances:
3 2 0.03
4 4 0.06
5 15 0.23
6 30 0.46
7 8 0.12
8 3 0.05
9 3 0.05
ACGTcount: A:0.53, C:0.00, G:0.01, T:0.45
Consensus pattern (6 bp):
TTTAAA
Found at i:7409872 original size:6 final size:5
Alignment explanation
Indices: 7409768--7409855 Score: 63
Period size: 5 Copynumber: 16.6 Consensus size: 5
7409758 TAAAAAAATT
* * *
7409768 TTAAA TTAAA TTTAA TTATTA TAAAA TTAAA TTGAAA -TAAA TTAAA TTTAAA
1 TTAAA TTAAA TTAAA TTA-AA TTAAA TTAAA TT-AAA TTAAA TTAAA -TTAAA
*
7409820 -TAAT TTAATA TTTAAA TTAAA TATAAA TTTAAA TTA
1 TTAAA TTAA-A -TTAAA TTAAA T-TAAA -TTAAA TTA
7409856 TTTTTATTAA
Statistics
Matches: 66, Mismatches: 8, Indels: 18
0.72 0.09 0.20
Matches are distributed among these distances:
4 6 0.09
5 35 0.53
6 20 0.30
7 5 0.08
ACGTcount: A:0.55, C:0.00, G:0.01, T:0.44
Consensus pattern (5 bp):
TTAAA
Found at i:7411005 original size:2 final size:2
Alignment explanation
Indices: 7411000--7411029 Score: 51
Period size: 2 Copynumber: 14.5 Consensus size: 2
7410990 TTACACTTTC
7411000 TA TA TA TA TA TA TA TA TA TA TA TA TGA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA T-A TA T
7411030 CTTCGTACTT
Statistics
Matches: 27, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
2 25 0.93
3 2 0.07
ACGTcount: A:0.47, C:0.00, G:0.03, T:0.50
Consensus pattern (2 bp):
TA
Found at i:7412791 original size:18 final size:18
Alignment explanation
Indices: 7412747--7412791 Score: 74
Period size: 18 Copynumber: 2.5 Consensus size: 18
7412737 ATCTCTTTCT
7412747 CCAGAAAAATAGATATTA
1 CCAGAAAAATAGATATTA
7412765 CCA-AGAAAATAGATATTA
1 CCAGA-AAAATAGATATTA
7412783 CCAGAAAAA
1 CCAGAAAAA
7412792 ATTTTCAGTT
Statistics
Matches: 25, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
17 1 0.04
18 23 0.92
19 1 0.04
ACGTcount: A:0.58, C:0.13, G:0.11, T:0.18
Consensus pattern (18 bp):
CCAGAAAAATAGATATTA
Found at i:7412899 original size:39 final size:39
Alignment explanation
Indices: 7412845--7412920 Score: 143
Period size: 39 Copynumber: 1.9 Consensus size: 39
7412835 CTGCCCACTT
*
7412845 GGCTTCTTGTATTTAAAGTGATTTGGGTATCTATTCCCC
1 GGCTTCTTATATTTAAAGTGATTTGGGTATCTATTCCCC
7412884 GGCTTCTTATATTTAAAGTGATTTGGGTATCTATTCC
1 GGCTTCTTATATTTAAAGTGATTTGGGTATCTATTCC
7412921 AATGATACTA
Statistics
Matches: 36, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
39 36 1.00
ACGTcount: A:0.20, C:0.16, G:0.20, T:0.45
Consensus pattern (39 bp):
GGCTTCTTATATTTAAAGTGATTTGGGTATCTATTCCCC
Found at i:7413782 original size:26 final size:26
Alignment explanation
Indices: 7413722--7413799 Score: 77
Period size: 25 Copynumber: 3.0 Consensus size: 26
7413712 TGAATGATTC
*
7413722 AAAAAAACTTATATTTTATTAAAAAT
1 AAAAAAAATTATATTTTATTAAAAAT
* * *
7413748 AAATAAAATTAT-TTTTATTTAAACT
1 AAAAAAAATTATATTTTATTAAAAAT
* *
7413773 AAAAATAAATTCATAATCTATTAAAAA
1 AAAAA-AAATT-ATATTTTATTAAAAA
7413800 AAATTTCCCG
Statistics
Matches: 40, Mismatches: 9, Indels: 4
0.75 0.17 0.08
Matches are distributed among these distances:
25 15 0.38
26 15 0.38
27 2 0.05
28 8 0.20
ACGTcount: A:0.56, C:0.05, G:0.00, T:0.38
Consensus pattern (26 bp):
AAAAAAAATTATATTTTATTAAAAAT
Found at i:7414367 original size:17 final size:18
Alignment explanation
Indices: 7414337--7414370 Score: 52
Period size: 17 Copynumber: 1.9 Consensus size: 18
7414327 TTTAAGTGAT
7414337 TTTGAATATAAATATATA
1 TTTGAATATAAATATATA
*
7414355 TTTG-ATATGAATATAT
1 TTTGAATATAAATATAT
7414371 TAAAAATTAT
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 11 0.73
18 4 0.27
ACGTcount: A:0.44, C:0.00, G:0.09, T:0.47
Consensus pattern (18 bp):
TTTGAATATAAATATATA
Found at i:7415682 original size:12 final size:12
Alignment explanation
Indices: 7415665--7415689 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
7415655 CTTATTGCTT
7415665 TTGCAATAGATG
1 TTGCAATAGATG
7415677 TTGCAATAGATG
1 TTGCAATAGATG
7415689 T
1 T
7415690 ATCCCTTCTG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.32, C:0.08, G:0.24, T:0.36
Consensus pattern (12 bp):
TTGCAATAGATG
Found at i:7416626 original size:17 final size:19
Alignment explanation
Indices: 7416604--7416645 Score: 70
Period size: 17 Copynumber: 2.3 Consensus size: 19
7416594 CATTACTATT
7416604 TATATTTAA-AATTT-TAA
1 TATATTTAATAATTTATAA
7416621 TATATTTAATAATTTATAA
1 TATATTTAATAATTTATAA
7416640 TATATT
1 TATATT
7416646 ATATTATACT
Statistics
Matches: 23, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
17 9 0.39
18 5 0.22
19 9 0.39
ACGTcount: A:0.45, C:0.00, G:0.00, T:0.55
Consensus pattern (19 bp):
TATATTTAATAATTTATAA
Found at i:7416753 original size:3 final size:3
Alignment explanation
Indices: 7416745--7416782 Score: 76
Period size: 3 Copynumber: 12.7 Consensus size: 3
7416735 TATAAATTAG
7416745 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TA
7416783 TTTCAGGATC
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 35 1.00
ACGTcount: A:0.66, C:0.00, G:0.00, T:0.34
Consensus pattern (3 bp):
TAA
Found at i:7418796 original size:2 final size:2
Alignment explanation
Indices: 7418789--7418813 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
7418779 AAAGCTAGAA
7418789 AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT A
7418814 GCATTAAATT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:7419114 original size:2 final size:2
Alignment explanation
Indices: 7419107--7419139 Score: 66
Period size: 2 Copynumber: 16.5 Consensus size: 2
7419097 GCTAGCATAA
7419107 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
7419140 GCATTAAGTT
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 31 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Done.