Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Scaffold1
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 8764944
ACGTcount: A:0.31, C:0.15, G:0.15, T:0.31
Warning! 632878 characters in sequence are not A, C, G, or T
File 48 of 52
Found at i:7750813 original size:20 final size:21
Alignment explanation
Indices: 7750768--7750818 Score: 63
Period size: 20 Copynumber: 2.6 Consensus size: 21
7750758 ATGATTATAT
*
7750768 ATATTTTTAT-T-ATATTTTA
1 ATATTTTTATATCGTATTTTA
*
7750787 TTATTTTTATATCGTATTTTA
1 ATATTTTTATATCGTATTTTA
7750808 AT-TTTTTATAT
1 ATATTTTTATAT
7750819 TATAATTGTT
Statistics
Matches: 27, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
19 9 0.33
20 10 0.37
21 8 0.30
ACGTcount: A:0.27, C:0.02, G:0.02, T:0.69
Consensus pattern (21 bp):
ATATTTTTATATCGTATTTTA
Found at i:7750820 original size:31 final size:29
Alignment explanation
Indices: 7750747--7750842 Score: 79
Period size: 31 Copynumber: 3.2 Consensus size: 29
7750737 ATTTTACATT
*
7750747 ATTTTTTTATTATGATTATATATATTTTT
1 ATTTTTTTATTATGATTATATATATTTTA
** *
7750776 ATTATATTTTATTATTTTTATATCGTATTTTA
1 ATT-T-TTTTATTATGATTATAT-ATATTTTA
* *
7750808 ATTTTTTATATTATAATTGT-TATA-TTTA
1 ATTTTTT-TATTATGATTATATATATTTTA
*
7750836 AGTTTTT
1 ATTTTTT
7750843 CAAATTTCTT
Statistics
Matches: 54, Mismatches: 9, Indels: 9
0.75 0.12 0.12
Matches are distributed among these distances:
28 10 0.19
29 5 0.09
30 5 0.09
31 25 0.46
32 9 0.17
ACGTcount: A:0.28, C:0.01, G:0.04, T:0.67
Consensus pattern (29 bp):
ATTTTTTTATTATGATTATATATATTTTA
Found at i:7752042 original size:22 final size:22
Alignment explanation
Indices: 7752014--7752056 Score: 77
Period size: 22 Copynumber: 2.0 Consensus size: 22
7752004 CCGTGCAAAC
*
7752014 GCCATACATGAGGAAAAGTCAA
1 GCCATACAAGAGGAAAAGTCAA
7752036 GCCATACAAGAGGAAAAGTCA
1 GCCATACAAGAGGAAAAGTCA
7752057 TATAAATACC
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
22 20 1.00
ACGTcount: A:0.47, C:0.19, G:0.23, T:0.12
Consensus pattern (22 bp):
GCCATACAAGAGGAAAAGTCAA
Found at i:7755666 original size:3 final size:3
Alignment explanation
Indices: 7755658--7755692 Score: 70
Period size: 3 Copynumber: 11.7 Consensus size: 3
7755648 ATCTATAAAA
7755658 AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AA
1 AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AA
7755693 TAAAGAAACA
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 32 1.00
ACGTcount: A:0.69, C:0.00, G:0.31, T:0.00
Consensus pattern (3 bp):
AAG
Found at i:7756169 original size:27 final size:27
Alignment explanation
Indices: 7756131--7756194 Score: 128
Period size: 27 Copynumber: 2.4 Consensus size: 27
7756121 AACAAAGCTC
7756131 GATCAATCTGCTCACCCTCACGTTCTT
1 GATCAATCTGCTCACCCTCACGTTCTT
7756158 GATCAATCTGCTCACCCTCACGTTCTT
1 GATCAATCTGCTCACCCTCACGTTCTT
7756185 GATCAATCTG
1 GATCAATCTG
7756195 ATTTAAGATT
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 37 1.00
ACGTcount: A:0.20, C:0.34, G:0.12, T:0.33
Consensus pattern (27 bp):
GATCAATCTGCTCACCCTCACGTTCTT
Found at i:7758397 original size:19 final size:20
Alignment explanation
Indices: 7758355--7758398 Score: 54
Period size: 20 Copynumber: 2.2 Consensus size: 20
7758345 TTTATCTTAT
**
7758355 ATTTAAATAAAAATTTTATT
1 ATTTAAATAAAAATTTTAAA
*
7758375 ATTTAAATAATAA-TTTAAA
1 ATTTAAATAAAAATTTTAAA
7758394 ATTTA
1 ATTTA
7758399 TTTAAATTAT
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
19 9 0.43
20 12 0.57
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (20 bp):
ATTTAAATAAAAATTTTAAA
Found at i:7759481 original size:2 final size:2
Alignment explanation
Indices: 7759474--7759516 Score: 86
Period size: 2 Copynumber: 21.5 Consensus size: 2
7759464 ATTTTCTTCC
7759474 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
7759516 T
1 T
7759517 GTAATATCAA
Statistics
Matches: 41, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 41 1.00
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (2 bp):
TA
Found at i:7759845 original size:22 final size:24
Alignment explanation
Indices: 7759800--7759845 Score: 60
Period size: 22 Copynumber: 2.0 Consensus size: 24
7759790 TTTGATATTA
**
7759800 ATATAAAAATATAATTTTCTAAAT
1 ATATAAAAATATAATTTTAAAAAT
7759824 ATATAAAAA-A-AATTTTAAAAAT
1 ATATAAAAATATAATTTTAAAAAT
7759846 TAAATATAAT
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
22 10 0.50
23 1 0.05
24 9 0.45
ACGTcount: A:0.61, C:0.02, G:0.00, T:0.37
Consensus pattern (24 bp):
ATATAAAAATATAATTTTAAAAAT
Found at i:7759875 original size:17 final size:17
Alignment explanation
Indices: 7759844--7759889 Score: 60
Period size: 17 Copynumber: 2.8 Consensus size: 17
7759834 AATTTTAAAA
7759844 ATTAAATATA-A-TTAT
1 ATTAAATATATATTTAT
7759859 ATTAAATATATATTTAT
1 ATTAAATATATATTTAT
* *
7759876 ATTTAATATTTATT
1 ATTAAATATATATT
7759890 CAAATTCAAA
Statistics
Matches: 27, Mismatches: 2, Indels: 2
0.87 0.06 0.06
Matches are distributed among these distances:
15 10 0.37
16 1 0.04
17 16 0.59
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (17 bp):
ATTAAATATATATTTAT
Found at i:7771321 original size:2 final size:2
Alignment explanation
Indices: 7771314--7771351 Score: 67
Period size: 2 Copynumber: 19.0 Consensus size: 2
7771304 TGAAGGAGGT
*
7771314 TC TC TC TC TC CC TC TC TC TC TC TC TC TC TC TC TC TC TC
1 TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC
7771352 GTGGGGGAGG
Statistics
Matches: 34, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
2 34 1.00
ACGTcount: A:0.00, C:0.53, G:0.00, T:0.47
Consensus pattern (2 bp):
TC
Found at i:7813956 original size:2 final size:2
Alignment explanation
Indices: 7813949--7813973 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
7813939 GTAACCAAAA
7813949 AG AG AG AG AG AG AG AG AG AG AG AG A
1 AG AG AG AG AG AG AG AG AG AG AG AG A
7813974 ATTTACCTTA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.52, C:0.00, G:0.48, T:0.00
Consensus pattern (2 bp):
AG
Found at i:7814238 original size:15 final size:16
Alignment explanation
Indices: 7814213--7814243 Score: 55
Period size: 15 Copynumber: 2.0 Consensus size: 16
7814203 AAACGGTGGC
7814213 TTTCTTTTCTTTTCTT
1 TTTCTTTTCTTTTCTT
7814229 TTTC-TTTCTTTTCTT
1 TTTCTTTTCTTTTCTT
7814244 CATTTGTTTG
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 11 0.73
16 4 0.27
ACGTcount: A:0.00, C:0.19, G:0.00, T:0.81
Consensus pattern (16 bp):
TTTCTTTTCTTTTCTT
Found at i:7815131 original size:2 final size:2
Alignment explanation
Indices: 7815124--7815157 Score: 68
Period size: 2 Copynumber: 17.0 Consensus size: 2
7815114 AGCATATGGA
7815124 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
7815158 GTATGTATGT
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 32 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:7819448 original size:16 final size:17
Alignment explanation
Indices: 7819429--7819464 Score: 56
Period size: 16 Copynumber: 2.2 Consensus size: 17
7819419 ATTTAATTTA
7819429 AAATAAAATAAA-ATAT
1 AAATAAAATAAATATAT
*
7819445 AAATATAATAAATATAT
1 AAATAAAATAAATATAT
7819462 AAA
1 AAA
7819465 CGTATTAATT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
16 11 0.61
17 7 0.39
ACGTcount: A:0.72, C:0.00, G:0.00, T:0.28
Consensus pattern (17 bp):
AAATAAAATAAATATAT
Found at i:7819925 original size:19 final size:18
Alignment explanation
Indices: 7819894--7819946 Score: 56
Period size: 19 Copynumber: 2.9 Consensus size: 18
7819884 TTATATTTAA
7819894 ATTTAATTATAAAATAAAT
1 ATTTAA-TATAAAATAAAT
7819913 ATATTAATATAAAA-ATAAT
1 AT-TTAATATAAAATA-AAT
*
7819932 ATTTAA-ATAATATAA
1 ATTTAATATAAAATAA
7819947 CAAAAAGTAA
Statistics
Matches: 30, Mismatches: 1, Indels: 8
0.77 0.03 0.21
Matches are distributed among these distances:
17 6 0.20
18 6 0.20
19 14 0.47
20 4 0.13
ACGTcount: A:0.60, C:0.00, G:0.00, T:0.40
Consensus pattern (18 bp):
ATTTAATATAAAATAAAT
Found at i:7819941 original size:17 final size:18
Alignment explanation
Indices: 7819894--7819941 Score: 53
Period size: 20 Copynumber: 2.6 Consensus size: 18
7819884 TTATATTTAA
*
7819894 ATTTAATTATAAAATAAAT
1 ATTTAAATA-AAAATAAAT
7819913 ATATTAATATAAAAAT-AAT
1 AT-TTAA-ATAAAAATAAAT
7819932 ATTTAAATAA
1 ATTTAAATAA
7819942 TATAACAAAA
Statistics
Matches: 26, Mismatches: 1, Indels: 6
0.79 0.03 0.18
Matches are distributed among these distances:
17 4 0.15
18 4 0.15
19 7 0.27
20 9 0.35
21 2 0.08
ACGTcount: A:0.60, C:0.00, G:0.00, T:0.40
Consensus pattern (18 bp):
ATTTAAATAAAAATAAAT
Found at i:7823197 original size:24 final size:24
Alignment explanation
Indices: 7823170--7823215 Score: 83
Period size: 24 Copynumber: 1.9 Consensus size: 24
7823160 GATATGTTCC
*
7823170 TAAGTACTATATAATTATGCAAAA
1 TAAGTACTATATAATCATGCAAAA
7823194 TAAGTACTATATAATCATGCAA
1 TAAGTACTATATAATCATGCAA
7823216 TATGATTAAA
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
24 21 1.00
ACGTcount: A:0.48, C:0.11, G:0.09, T:0.33
Consensus pattern (24 bp):
TAAGTACTATATAATCATGCAAAA
Found at i:7824707 original size:19 final size:19
Alignment explanation
Indices: 7824685--7824738 Score: 65
Period size: 18 Copynumber: 2.8 Consensus size: 19
7824675 AAATTAAATT
*
7824685 AATAAAAAATAATTTAATC
1 AATAAAAAATAATTTAATA
*
7824704 AAT-AAAAATAATTAAAATA
1 AATAAAAAATAATT-TAATA
7824723 AATAAAAAATTAATTT
1 AATAAAAAA-TAATTT
7824739 TATGTAAACT
Statistics
Matches: 29, Mismatches: 3, Indels: 5
0.78 0.08 0.14
Matches are distributed among these distances:
18 10 0.34
19 9 0.31
20 5 0.17
21 5 0.17
ACGTcount: A:0.67, C:0.02, G:0.00, T:0.31
Consensus pattern (19 bp):
AATAAAAAATAATTTAATA
Found at i:7824712 original size:18 final size:19
Alignment explanation
Indices: 7824676--7824730 Score: 60
Period size: 19 Copynumber: 2.9 Consensus size: 19
7824666 ATTTAAGATA
*
7824676 AATT-AAATTAATAAAAAAT
1 AATTAAAATAAAT-AAAAAT
* *
7824695 AATT-TAATCAATAAAAAT
1 AATTAAAATAAATAAAAAT
7824713 AATTAAAATAAATAAAAA
1 AATTAAAATAAATAAAAA
7824731 ATTAATTTTA
Statistics
Matches: 31, Mismatches: 4, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
18 10 0.32
19 21 0.68
ACGTcount: A:0.69, C:0.02, G:0.00, T:0.29
Consensus pattern (19 bp):
AATTAAAATAAATAAAAAT
Found at i:7824777 original size:21 final size:21
Alignment explanation
Indices: 7824751--7824792 Score: 84
Period size: 21 Copynumber: 2.0 Consensus size: 21
7824741 TGTAAACTTT
7824751 TATTTAATTAATAAATTTAAA
1 TATTTAATTAATAAATTTAAA
7824772 TATTTAATTAATAAATTTAAA
1 TATTTAATTAATAAATTTAAA
7824793 AATTATATCA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (21 bp):
TATTTAATTAATAAATTTAAA
Found at i:7824826 original size:21 final size:20
Alignment explanation
Indices: 7824758--7824824 Score: 64
Period size: 21 Copynumber: 3.2 Consensus size: 20
7824748 TTTTATTTAA
*
7824758 TTAATAAATTTAAATATTTAA
1 TTAATAAATTTAAATA-TTAT
*
7824779 TTAATAAATTTAAAAATTAT
1 TTAATAAATTTAAATATTAT
* *
7824799 ATCATTAAA-TTAAATATATAT
1 -TTAATAAATTTAAATAT-TAT
7824820 TTAAT
1 TTAAT
7824825 TATTTATTTA
Statistics
Matches: 37, Mismatches: 7, Indels: 5
0.76 0.14 0.10
Matches are distributed among these distances:
20 13 0.35
21 24 0.65
ACGTcount: A:0.52, C:0.01, G:0.00, T:0.46
Consensus pattern (20 bp):
TTAATAAATTTAAATATTAT
Found at i:7825188 original size:20 final size:20
Alignment explanation
Indices: 7825149--7825221 Score: 62
Period size: 20 Copynumber: 3.6 Consensus size: 20
7825139 ATCTATTTTT
*
7825149 ATATTATA-ATTATATTTAAA
1 ATATTATATATT-TATATAAA
7825169 ATATTATATATTTATATAAA
1 ATATTATATATTTATATAAA
* * *
7825189 TTTTTATATA-TTA-ATAATTT
1 ATATTATATATTTATATAA--A
7825209 ATATTATATATTT
1 ATATTATATATTT
7825222 TTTTAATATC
Statistics
Matches: 43, Mismatches: 6, Indels: 7
0.77 0.11 0.12
Matches are distributed among these distances:
18 4 0.09
19 3 0.07
20 31 0.72
21 5 0.12
ACGTcount: A:0.44, C:0.00, G:0.00, T:0.56
Consensus pattern (20 bp):
ATATTATATATTTATATAAA
Found at i:7826794 original size:35 final size:34
Alignment explanation
Indices: 7826703--7826824 Score: 88
Period size: 35 Copynumber: 3.4 Consensus size: 34
7826693 TTATATATAT
*
7826703 TTATTTAAGTTTTTTAAAAAATAAAAATTTTAAATT--
1 TTATTTAA-TTTTTT-AAAAAT--AAATTTTTAATTAA
* * **
7826739 TTATTTAAATTTATCTAAATAAATTTATTAATTAA
1 TTATTTAATTTTTTAAAAATAAATTT-TTAATTAA
*
7826774 TTATTTAATTTTTTAAAAATATTATTTTTAATTTAA
1 TTATTTAATTTTTTAAAAATA-AATTTTTAA-TTAA
*
7826810 -TCTTTAATTATTTTA
1 TTATTTAATT-TTTTA
7826825 TATATTTTTA
Statistics
Matches: 69, Mismatches: 11, Indels: 12
0.75 0.12 0.13
Matches are distributed among these distances:
32 6 0.09
33 5 0.07
34 4 0.06
35 33 0.48
36 21 0.30
ACGTcount: A:0.42, C:0.02, G:0.01, T:0.56
Consensus pattern (34 bp):
TTATTTAATTTTTTAAAAATAAATTTTTAATTAA
Found at i:7829193 original size:13 final size:13
Alignment explanation
Indices: 7829172--7829219 Score: 53
Period size: 13 Copynumber: 3.6 Consensus size: 13
7829162 CTATATTATT
7829172 TAAAT-TTAAATA
1 TAAATATTAAATA
*
7829184 TTAATATTAAATA
1 TAAATATTAAATA
*
7829197 TAAATATATATGATA
1 TAAATAT-TA-AATA
7829212 TAAATATT
1 TAAATATT
7829220 TTGATTTTTT
Statistics
Matches: 30, Mismatches: 3, Indels: 4
0.81 0.08 0.11
Matches are distributed among these distances:
12 4 0.13
13 13 0.43
14 3 0.10
15 10 0.33
ACGTcount: A:0.54, C:0.00, G:0.02, T:0.44
Consensus pattern (13 bp):
TAAATATTAAATA
Found at i:7829873 original size:19 final size:19
Alignment explanation
Indices: 7829849--7829888 Score: 64
Period size: 19 Copynumber: 2.1 Consensus size: 19
7829839 TGTGCCTCAT
7829849 TGTTGTGCG-CCGCTGGGCC
1 TGTTGTGCGACC-CTGGGCC
7829868 TGTTGTGCGACCCTGGGCC
1 TGTTGTGCGACCCTGGGCC
7829887 TG
1 TG
7829889 CTAGGCGCAT
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
19 18 0.90
20 2 0.10
ACGTcount: A:0.03, C:0.30, G:0.40, T:0.28
Consensus pattern (19 bp):
TGTTGTGCGACCCTGGGCC
Found at i:7832155 original size:189 final size:189
Alignment explanation
Indices: 7831835--7832197 Score: 568
Period size: 189 Copynumber: 1.9 Consensus size: 189
7831825 AGTGTTCCAG
*
7831835 TGGATTTGTTGTCAATGGACCTCTTTGTTATGTTCTTGCAGATAGTACTGTTGGTTAATGTTGTT
1 TGGATTTGTTGTCAATGGACCTCTTTGATATGTTCTTGCAGATAGTACTGTTGGTTAATGTTGTT
* * * * *
7831900 TCAACTCTTTATTTTTTAAAAATATTCGTATTAGTCGCTTATTTGAACATGGTATAGAGGTCTGA
66 CCAACTCTTTATTTTTTAAAAATATTCGTATCAGACGATTATTTCAACATGGTATAGAGGTCTGA
*
7831965 CCCTCCAAAGACCCTCTATCAAAAAACTTAGAAAAAAATAAAAATATCCGAGTCGGGAA
131 CCCTCCAAAGACCCTCTATCAAAAAACTTAGAAAAAAAAAAAAATATCCGAGTCGGGAA
* *
7832024 TGGATTTGTTGTCAATGGACCTTTTTGATATGTTCTTGCATATAGTACTGTTGGTTAATGTTGTT
1 TGGATTTGTTGTCAATGGACCTCTTTGATATGTTCTTGCAGATAGTACTGTTGGTTAATGTTGTT
* *
7832089 CCAACGT-TTTATTCTTTT-AAAGTATTCGTATCCGACGATTATTTCAACATGGTATAGAGGTCT
66 CCAAC-TCTTTATT-TTTTAAAAATATTCGTATCAGACGATTATTTCAACATGGTATAGAGGTCT
* **
7832152 GACCTTCCAAAGATTCTCTATCAAAAAACTTAGAAAAAAAAAAAAA
129 GACCCTCCAAAGACCCTCTATCAAAAAACTTAGAAAAAAAAAAAAA
7832198 AACATATCTG
Statistics
Matches: 158, Mismatches: 14, Indels: 4
0.90 0.08 0.02
Matches are distributed among these distances:
189 153 0.97
190 5 0.03
ACGTcount: A:0.31, C:0.15, G:0.17, T:0.37
Consensus pattern (189 bp):
TGGATTTGTTGTCAATGGACCTCTTTGATATGTTCTTGCAGATAGTACTGTTGGTTAATGTTGTT
CCAACTCTTTATTTTTTAAAAATATTCGTATCAGACGATTATTTCAACATGGTATAGAGGTCTGA
CCCTCCAAAGACCCTCTATCAAAAAACTTAGAAAAAAAAAAAAATATCCGAGTCGGGAA
Found at i:7835680 original size:2 final size:2
Alignment explanation
Indices: 7835673--7835734 Score: 115
Period size: 2 Copynumber: 31.0 Consensus size: 2
7835663 TAAAAGGTTC
7835673 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
*
7835715 AT AT AT AT AT AT AT CT AT AT
1 AT AT AT AT AT AT AT AT AT AT
7835735 TGGATTAAAT
Statistics
Matches: 58, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
2 58 1.00
ACGTcount: A:0.48, C:0.02, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:7836354 original size:2 final size:2
Alignment explanation
Indices: 7836349--7836378 Score: 51
Period size: 2 Copynumber: 15.0 Consensus size: 2
7836339 GGTATCAAGA
*
7836349 AT AT AT AT AT AT AT AT AT AT AT AT TT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
7836379 TCGAGGGCCA
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (2 bp):
AT
Found at i:7836513 original size:2 final size:2
Alignment explanation
Indices: 7836506--7836553 Score: 96
Period size: 2 Copynumber: 24.0 Consensus size: 2
7836496 TAAAACAAAG
7836506 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
7836548 AT AT AT
1 AT AT AT
7836554 TGATCTTACG
Statistics
Matches: 46, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 46 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:7837423 original size:2 final size:2
Alignment explanation
Indices: 7837416--7837449 Score: 68
Period size: 2 Copynumber: 17.0 Consensus size: 2
7837406 ATAAGCTTGT
7837416 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
7837450 CATGTTTAGG
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 32 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:7843521 original size:23 final size:26
Alignment explanation
Indices: 7843495--7843543 Score: 68
Period size: 23 Copynumber: 2.0 Consensus size: 26
7843485 ATAATGTTAT
7843495 AAAAGTAAT-TAAA-ATAT-AATATA
1 AAAAGTAATATAAATATATAAATATA
*
7843518 AAAATTAATATAAATATATAAATATA
1 AAAAGTAATATAAATATATAAATATA
7843544 TTAAAATTTA
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
23 8 0.36
24 4 0.18
25 4 0.18
26 6 0.27
ACGTcount: A:0.65, C:0.00, G:0.02, T:0.33
Consensus pattern (26 bp):
AAAAGTAATATAAATATATAAATATA
Found at i:7843526 original size:12 final size:13
Alignment explanation
Indices: 7843505--7843543 Score: 53
Period size: 12 Copynumber: 3.0 Consensus size: 13
7843495 AAAAGTAATT
7843505 AAAATATAATATA
1 AAAATATAATATA
7843518 AAAAT-TAATATA
1 AAAATATAATATA
*
7843530 AATATATAAATATA
1 AAAATAT-AATATA
7843544 TTAAAATTTA
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
12 11 0.48
13 6 0.26
14 6 0.26
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (13 bp):
AAAATATAATATA
Found at i:7843535 original size:18 final size:19
Alignment explanation
Indices: 7843501--7843540 Score: 55
Period size: 18 Copynumber: 2.2 Consensus size: 19
7843491 TTATAAAAGT
7843501 AATTAAAATATAATATAAA
1 AATTAAAATATAATATAAA
* *
7843520 AATTAATATA-AATATATA
1 AATTAAAATATAATATAAA
7843538 AAT
1 AAT
7843541 ATATTAAAAT
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
18 10 0.53
19 9 0.47
ACGTcount: A:0.65, C:0.00, G:0.00, T:0.35
Consensus pattern (19 bp):
AATTAAAATATAATATAAA
Found at i:7843549 original size:28 final size:25
Alignment explanation
Indices: 7843492--7843556 Score: 71
Period size: 28 Copynumber: 2.6 Consensus size: 25
7843482 TTAATAATGT
*
7843492 TATAAAAGTAAT-TAAAATATAATA
1 TATAAAATTAATATAAAATATAATA
7843516 TA-AAAATTAATATAAATATATAAATA
1 TATAAAATTAATATAAA-ATAT-AATA
*
7843542 TATTAAAATTTATAT
1 TA-TAAAATTAATAT
7843557 GATACATAAA
Statistics
Matches: 34, Mismatches: 2, Indels: 6
0.81 0.05 0.14
Matches are distributed among these distances:
23 8 0.24
24 6 0.18
25 4 0.12
26 6 0.18
28 10 0.29
ACGTcount: A:0.60, C:0.00, G:0.02, T:0.38
Consensus pattern (25 bp):
TATAAAATTAATATAAAATATAATA
Found at i:7845417 original size:12 final size:13
Alignment explanation
Indices: 7845384--7845421 Score: 51
Period size: 12 Copynumber: 2.9 Consensus size: 13
7845374 TTTTTTATAT
7845384 TAATTATATAAATA
1 TAATTAT-TAAATA
*
7845398 TAAATATTAAATA
1 TAATTATTAAATA
7845411 -AATTATTAAAT
1 TAATTATTAAAT
7845422 GTATCATAAT
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
12 10 0.45
13 6 0.27
14 6 0.27
ACGTcount: A:0.58, C:0.00, G:0.00, T:0.42
Consensus pattern (13 bp):
TAATTATTAAATA
Found at i:7845625 original size:20 final size:20
Alignment explanation
Indices: 7845592--7845637 Score: 58
Period size: 20 Copynumber: 2.3 Consensus size: 20
7845582 GTGTTAGACG
*
7845592 TTTTATATTCATTACAT-TA
1 TTTTATATTCATTAAATATA
*
7845611 TTTTCATATTTATTAAATATA
1 TTTT-ATATTCATTAAATATA
7845632 TTTTAT
1 TTTTAT
7845638 TTAGGTTATA
Statistics
Matches: 23, Mismatches: 2, Indels: 3
0.82 0.07 0.11
Matches are distributed among these distances:
19 4 0.17
20 13 0.57
21 6 0.26
ACGTcount: A:0.33, C:0.07, G:0.00, T:0.61
Consensus pattern (20 bp):
TTTTATATTCATTAAATATA
Found at i:7846251 original size:15 final size:15
Alignment explanation
Indices: 7846226--7846259 Score: 52
Period size: 16 Copynumber: 2.3 Consensus size: 15
7846216 AAGCTTGGGA
7846226 TAAAAAAAAA-TTAT
1 TAAAAAAAAATTTAT
7846240 TAAAATAAAAATTTAT
1 TAAAA-AAAAATTTAT
7846256 TAAA
1 TAAA
7846260 TATCATATTT
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
14 5 0.28
15 5 0.28
16 8 0.44
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (15 bp):
TAAAAAAAAATTTAT
Found at i:7847135 original size:7 final size:8
Alignment explanation
Indices: 7847113--7847137 Score: 50
Period size: 8 Copynumber: 3.1 Consensus size: 8
7847103 TCATGTCAAA
7847113 ATATTTTT
1 ATATTTTT
7847121 ATATTTTT
1 ATATTTTT
7847129 ATATTTTT
1 ATATTTTT
7847137 A
1 A
7847138 CTCGGTAAAT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 17 1.00
ACGTcount: A:0.28, C:0.00, G:0.00, T:0.72
Consensus pattern (8 bp):
ATATTTTT
Found at i:7849264 original size:2 final size:2
Alignment explanation
Indices: 7849257--7849286 Score: 60
Period size: 2 Copynumber: 15.0 Consensus size: 2
7849247 AGTTATTACA
7849257 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
7849287 TCCCTCACCT
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 28 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:7850068 original size:26 final size:27
Alignment explanation
Indices: 7850039--7850096 Score: 84
Period size: 26 Copynumber: 2.2 Consensus size: 27
7850029 CTAAAAAAAA
*
7850039 TTAAATTTTAATT-TTTATATTCAATT
1 TTAAATTTTAATTATTTATATTAAATT
7850065 TTAAA-TTTAATTATTTATATTAAATT
1 TTAAATTTTAATTATTTATATTAAATT
*
7850091 TAAAAT
1 TTAAAT
7850097 AAAATTAAAA
Statistics
Matches: 28, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
25 7 0.25
26 21 0.75
ACGTcount: A:0.41, C:0.02, G:0.00, T:0.57
Consensus pattern (27 bp):
TTAAATTTTAATTATTTATATTAAATT
Found at i:7850102 original size:26 final size:26
Alignment explanation
Indices: 7850048--7850103 Score: 69
Period size: 26 Copynumber: 2.2 Consensus size: 26
7850038 ATTAAATTTT
* * **
7850048 AATT-TTTATATTCAATTTTAAATTT
1 AATTATTTATATTAAATTTAAAATAA
7850073 AATTATTTATATTAAATTTAAAATAA
1 AATTATTTATATTAAATTTAAAATAA
7850099 AATTA
1 AATTA
7850104 AAATTTTTAA
Statistics
Matches: 26, Mismatches: 4, Indels: 1
0.84 0.13 0.03
Matches are distributed among these distances:
25 4 0.15
26 22 0.85
ACGTcount: A:0.46, C:0.02, G:0.00, T:0.52
Consensus pattern (26 bp):
AATTATTTATATTAAATTTAAAATAA
Found at i:7850115 original size:18 final size:18
Alignment explanation
Indices: 7850094--7850145 Score: 50
Period size: 18 Copynumber: 2.9 Consensus size: 18
7850084 TTAAATTTAA
*
7850094 AATAAAATTAAAATTTTT
1 AATAAAATTAAAATATTT
**
7850112 AATATTATTAAAATATTT
1 AATAAAATTAAAATATTT
* * *
7850130 ATTATATTTAAAATAT
1 AATAAAATTAAAATAT
7850146 ATTTAAATAA
Statistics
Matches: 28, Mismatches: 6, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
18 28 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (18 bp):
AATAAAATTAAAATATTT
Found at i:7851112 original size:22 final size:21
Alignment explanation
Indices: 7851064--7851118 Score: 67
Period size: 20 Copynumber: 2.6 Consensus size: 21
7851054 ACTCTGGAAA
*
7851064 ATATATTTTTTTCTTATATAT
1 ATATATATTTTTCTTATATAT
*
7851085 -TTTATATTTTTCTATATATAT
1 ATATATATTTTTCT-TATATAT
*
7851106 ATATATATATTTC
1 ATATATATTTTTC
7851119 AATTCTGGTA
Statistics
Matches: 28, Mismatches: 4, Indels: 3
0.80 0.11 0.09
Matches are distributed among these distances:
20 11 0.39
21 7 0.25
22 10 0.36
ACGTcount: A:0.31, C:0.05, G:0.00, T:0.64
Consensus pattern (21 bp):
ATATATATTTTTCTTATATAT
Found at i:7857266 original size:2 final size:2
Alignment explanation
Indices: 7857259--7857283 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
7857249 GGGTGTTGGC
7857259 GA GA GA GA GA GA GA GA GA GA GA GA G
1 GA GA GA GA GA GA GA GA GA GA GA GA G
7857284 TGGAGAATCT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.48, C:0.00, G:0.52, T:0.00
Consensus pattern (2 bp):
GA
Found at i:7857654 original size:27 final size:25
Alignment explanation
Indices: 7857615--7857667 Score: 63
Period size: 27 Copynumber: 2.0 Consensus size: 25
7857605 AAATTATCAG
7857615 TAAAATTATAATAAAATTAATAAAAAA
1 TAAAATTATAATAAAA-T-ATAAAAAA
*
7857642 TAAAATT-TAAATATAATATAAAAAA
1 TAAAATTAT-AATAAAATATAAAAAA
7857667 T
1 T
7857668 TAATAAATCA
Statistics
Matches: 24, Mismatches: 1, Indels: 4
0.83 0.03 0.14
Matches are distributed among these distances:
25 9 0.38
26 2 0.08
27 13 0.54
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (25 bp):
TAAAATTATAATAAAATATAAAAAA
Found at i:7857685 original size:34 final size:35
Alignment explanation
Indices: 7857621--7857690 Score: 90
Period size: 34 Copynumber: 2.0 Consensus size: 35
7857611 TCAGTAAAAT
7857621 TATAATAAAATTAATAAAAAATAAAATTTAAATATAA
1 TATAATAAAATTAAT--AAAATAAAATTTAAATATAA
*
7857658 TATAA-AAAATTAAT-AAATCAAATTTTAAATATA
1 TATAATAAAATTAATAAAAT-AAAATTTAAATATA
7857691 TTTTTATATA
Statistics
Matches: 31, Mismatches: 1, Indels: 5
0.84 0.03 0.14
Matches are distributed among these distances:
33 4 0.13
34 13 0.42
36 9 0.29
37 5 0.16
ACGTcount: A:0.64, C:0.01, G:0.00, T:0.34
Consensus pattern (35 bp):
TATAATAAAATTAATAAAATAAAATTTAAATATAA
Found at i:7857734 original size:18 final size:18
Alignment explanation
Indices: 7857697--7857742 Score: 58
Period size: 18 Copynumber: 2.6 Consensus size: 18
7857687 TATATTTTTA
* *
7857697 TATATTA-ATAATATATT
1 TATATTATATTATATAAT
7857714 TATATTATATTATATAAT
1 TATATTATATTATATAAT
*
7857732 TATATCATATT
1 TATATTATATT
7857743 TAATTTTATA
Statistics
Matches: 25, Mismatches: 3, Indels: 1
0.86 0.10 0.03
Matches are distributed among these distances:
17 7 0.28
18 18 0.72
ACGTcount: A:0.43, C:0.02, G:0.00, T:0.54
Consensus pattern (18 bp):
TATATTATATTATATAAT
Found at i:7858399 original size:17 final size:14
Alignment explanation
Indices: 7858368--7858424 Score: 55
Period size: 14 Copynumber: 3.9 Consensus size: 14
7858358 AAATTTAATT
7858368 ATAAAAATATATTA
1 ATAAAAATATATTA
7858382 ATAAAAATAATAATTTA
1 ATAAAAAT-AT-A-TTA
*
7858399 AT-AGAAT-TATTA
1 ATAAAAATATATTA
7858411 ATAATAAATATATT
1 ATAA-AAATATATT
7858425 TTTAAATCAA
Statistics
Matches: 35, Mismatches: 2, Indels: 11
0.73 0.04 0.23
Matches are distributed among these distances:
12 5 0.14
13 2 0.06
14 12 0.34
15 6 0.17
16 5 0.14
17 5 0.14
ACGTcount: A:0.60, C:0.00, G:0.02, T:0.39
Consensus pattern (14 bp):
ATAAAAATATATTA
Found at i:7859806 original size:12 final size:12
Alignment explanation
Indices: 7859791--7859824 Score: 50
Period size: 12 Copynumber: 2.8 Consensus size: 12
7859781 ATATTTAAAA
*
7859791 ATATATATTTTT
1 ATATATATATTT
*
7859803 ATATTTATATTT
1 ATATATATATTT
7859815 ATATATATAT
1 ATATATATAT
7859825 AAATATATTA
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
12 19 1.00
ACGTcount: A:0.38, C:0.00, G:0.00, T:0.62
Consensus pattern (12 bp):
ATATATATATTT
Found at i:7860758 original size:16 final size:16
Alignment explanation
Indices: 7860711--7860758 Score: 64
Period size: 16 Copynumber: 3.1 Consensus size: 16
7860701 CGGATTAAAA
7860711 ATTATT-ATATATTTT
1 ATTATTAATATATTTT
*
7860726 ATTATTTAAT-TAATTT
1 ATTA-TTAATATATTTT
7860742 ATTATTAATATATTTT
1 ATTATTAATATATTTT
7860758 A
1 A
7860759 AAAAATACGT
Statistics
Matches: 28, Mismatches: 2, Indels: 5
0.80 0.06 0.14
Matches are distributed among these distances:
15 9 0.32
16 17 0.61
17 2 0.07
ACGTcount: A:0.38, C:0.00, G:0.00, T:0.62
Consensus pattern (16 bp):
ATTATTAATATATTTT
Found at i:7860860 original size:12 final size:12
Alignment explanation
Indices: 7860843--7860885 Score: 52
Period size: 12 Copynumber: 3.6 Consensus size: 12
7860833 TATTAAATAA
7860843 TTTAAATTATTC
1 TTTAAATTATTC
*
7860855 TTTAAA-TATATA
1 TTTAAATTAT-TC
*
7860867 TTTGAATTATTC
1 TTTAAATTATTC
7860879 TTTAAAT
1 TTTAAAT
7860886 ACATATATAT
Statistics
Matches: 25, Mismatches: 4, Indels: 4
0.76 0.12 0.12
Matches are distributed among these distances:
11 3 0.12
12 19 0.76
13 3 0.12
ACGTcount: A:0.37, C:0.05, G:0.02, T:0.56
Consensus pattern (12 bp):
TTTAAATTATTC
Found at i:7860874 original size:24 final size:24
Alignment explanation
Indices: 7860842--7860891 Score: 82
Period size: 24 Copynumber: 2.1 Consensus size: 24
7860832 ATATTAAATA
*
7860842 ATTTAAATTATTCTTTAAATATAT
1 ATTTAAATTATTCTTTAAATACAT
*
7860866 ATTTGAATTATTCTTTAAATACAT
1 ATTTAAATTATTCTTTAAATACAT
7860890 AT
1 AT
7860892 ATATATATAT
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
24 24 1.00
ACGTcount: A:0.40, C:0.06, G:0.02, T:0.52
Consensus pattern (24 bp):
ATTTAAATTATTCTTTAAATACAT
Found at i:7861094 original size:2 final size:2
Alignment explanation
Indices: 7861081--7861110 Score: 51
Period size: 2 Copynumber: 15.0 Consensus size: 2
7861071 TGGATTTTTC
*
7861081 AT AT AA AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
7861111 GTGTGTGTGA
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (2 bp):
AT
Found at i:7861557 original size:3 final size:3
Alignment explanation
Indices: 7861549--7861584 Score: 72
Period size: 3 Copynumber: 12.0 Consensus size: 3
7861539 TAAGATTGAT
7861549 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
7861585 ACGAATGTAA
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 33 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (3 bp):
TTA
Found at i:7862656 original size:29 final size:26
Alignment explanation
Indices: 7862623--7862684 Score: 70
Period size: 29 Copynumber: 2.2 Consensus size: 26
7862613 TATATGAATT
7862623 TATTTAATATAAATATATTTAATTTTTTA
1 TATTTAA-A-AAATATATTTAA-TTTTTA
*
7862652 TATTTTTAAAAAATATATTTTATTTTTA
1 TA--TTTAAAAAATATATTTAATTTTTA
7862680 TATTT
1 TATTT
7862685 GTGTGGATTG
Statistics
Matches: 30, Mismatches: 1, Indels: 7
0.79 0.03 0.18
Matches are distributed among these distances:
26 3 0.10
28 8 0.27
29 13 0.43
30 1 0.03
31 5 0.17
ACGTcount: A:0.39, C:0.00, G:0.00, T:0.61
Consensus pattern (26 bp):
TATTTAAAAAATATATTTAATTTTTA
Found at i:7863446 original size:12 final size:12
Alignment explanation
Indices: 7863431--7863456 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
7863421 AAAAGGCAGC
7863431 AAAAACAAAAAA
1 AAAAACAAAAAA
7863443 AAAAACAAAAAA
1 AAAAACAAAAAA
7863455 AA
1 AA
7863457 CCATACAAAA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.92, C:0.08, G:0.00, T:0.00
Consensus pattern (12 bp):
AAAAACAAAAAA
Found at i:7866291 original size:26 final size:28
Alignment explanation
Indices: 7866245--7866306 Score: 76
Period size: 27 Copynumber: 2.3 Consensus size: 28
7866235 TAAAATTTTT
*
7866245 AATAAT-TTTAATCAATTTTATTAA-AA
1 AATAATATTTAATCAATATTATTAATAA
* *
7866271 AATAATATTTAAT-TATATTATTAATTA
1 AATAATATTTAATCAATATTATTAATAA
7866298 AATAATATT
1 AATAATATT
7866307 GTTATGTAAA
Statistics
Matches: 31, Mismatches: 3, Indels: 3
0.84 0.08 0.08
Matches are distributed among these distances:
26 15 0.48
27 16 0.52
ACGTcount: A:0.50, C:0.02, G:0.00, T:0.48
Consensus pattern (28 bp):
AATAATATTTAATCAATATTATTAATAA
Found at i:7867827 original size:16 final size:17
Alignment explanation
Indices: 7867784--7867875 Score: 52
Period size: 16 Copynumber: 5.5 Consensus size: 17
7867774 TTAATTTTAG
7867784 ATAT-TATAA-AAATAT
1 ATATATATAATAAATAT
7867799 ATATATATTTAATAAATAT
1 ATATATA--TAATAAATAT
* *
7867818 A-ATATATAAT-ATTAA
1 ATATATATAATAAATAT
* *
7867833 ATATTTATAAT-ATTAT
1 ATATATATAATAAATAT
*
7867849 ATATTTAATATATAAAT-T
1 ATATAT-ATA-ATAAATAT
*
7867867 ATATTTATA
1 ATATATATA
7867876 TTTAAAATTT
Statistics
Matches: 64, Mismatches: 5, Indels: 14
0.77 0.06 0.17
Matches are distributed among these distances:
15 8 0.12
16 24 0.38
17 6 0.09
18 17 0.27
19 9 0.14
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (17 bp):
ATATATATAATAAATAT
Found at i:7867835 original size:23 final size:24
Alignment explanation
Indices: 7867794--7867880 Score: 99
Period size: 23 Copynumber: 3.7 Consensus size: 24
7867784 ATATTATAAA
7867794 AATATATATATATTTAATAAATAT
1 AATATATATATATTTAATAAATAT
* **
7867818 AATATATA-ATATTAAATATTTAT
1 AATATATATATATTTAATAAATAT
*
7867841 AATAT-TATATATTTAATATATA-
1 AATATATATATATTTAATAAATAT
*
7867863 AATTATATTTATATTTAA
1 AA-TATATATATATTTAA
7867881 AATTTAAATA
Statistics
Matches: 54, Mismatches: 6, Indels: 6
0.82 0.09 0.09
Matches are distributed among these distances:
22 4 0.07
23 32 0.59
24 18 0.33
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (24 bp):
AATATATATATATTTAATAAATAT
Found at i:7867858 original size:46 final size:47
Alignment explanation
Indices: 7867793--7867893 Score: 129
Period size: 46 Copynumber: 2.2 Consensus size: 47
7867783 GATATTATAA
7867793 AAATATATATATATTTAATAAATATAA-TATA-TAATA-TTAAATATTT
1 AAATATATATATATTTAATAAATA-AATTATATTAATATTTAAA-ATTT
* *
7867839 ATAATAT-TATATATTTAATATATAAATTATATTTATATTTAAAATTT
1 A-AATATATATATATTTAATAAATAAATTATATTAATATTTAAAATTT
7867886 AAATATAT
1 AAATATAT
7867894 TTACAAATTT
Statistics
Matches: 48, Mismatches: 2, Indels: 9
0.81 0.03 0.15
Matches are distributed among these distances:
45 2 0.04
46 26 0.54
47 15 0.31
48 5 0.10
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (47 bp):
AAATATATATATATTTAATAAATAAATTATATTAATATTTAAAATTT
Found at i:7867883 original size:18 final size:19
Alignment explanation
Indices: 7867848--7867908 Score: 56
Period size: 18 Copynumber: 3.3 Consensus size: 19
7867838 TATAATATTA
* *
7867848 TATATTTA-ATATATAAAT
1 TATATTTATATTTACAAAT
7867866 TATATTTATATTTA-AAAT
1 TATATTTATATTTACAAAT
**
7867884 T-TAAATATATTTACAAATT
1 TATATTTATATTTACAAA-T
7867903 TATATT
1 TATATT
7867909 GTGTTTATAT
Statistics
Matches: 34, Mismatches: 5, Indels: 6
0.76 0.11 0.13
Matches are distributed among these distances:
17 10 0.29
18 16 0.47
19 6 0.18
20 2 0.06
ACGTcount: A:0.46, C:0.02, G:0.00, T:0.52
Consensus pattern (19 bp):
TATATTTATATTTACAAAT
Found at i:7867896 original size:23 final size:23
Alignment explanation
Indices: 7867793--7867896 Score: 81
Period size: 23 Copynumber: 4.5 Consensus size: 23
7867783 GATATTATAA
*
7867793 AAATATATATATATTTAATAA-AT
1 AAATATATTTATATTTAA-AATAT
* *
7867816 ATAATATA-TAATA-TTAAATATTT
1 A-AATATATTTATATTTAAA-ATAT
* *
7867839 ATAATAT-TATATATTTAATATAT
1 A-AATATATTTATATTTAAAATAT
*
7867862 AAATTATATTTATATTTAAAATTT
1 AAA-TATATTTATATTTAAAATAT
7867886 AAATATATTTA
1 AAATATATTTA
7867897 CAAATTTATA
Statistics
Matches: 64, Mismatches: 10, Indels: 14
0.73 0.11 0.16
Matches are distributed among these distances:
21 1 0.02
22 7 0.11
23 30 0.47
24 26 0.41
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (23 bp):
AAATATATTTATATTTAAAATAT
Found at i:7868563 original size:6 final size:6
Alignment explanation
Indices: 7868552--7868576 Score: 50
Period size: 6 Copynumber: 4.2 Consensus size: 6
7868542 TTTCATTAAA
7868552 ATATTT ATATTT ATATTT ATATTT A
1 ATATTT ATATTT ATATTT ATATTT A
7868577 AAATATATGT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 19 1.00
ACGTcount: A:0.36, C:0.00, G:0.00, T:0.64
Consensus pattern (6 bp):
ATATTT
Found at i:7868872 original size:2 final size:2
Alignment explanation
Indices: 7868865--7868895 Score: 62
Period size: 2 Copynumber: 15.5 Consensus size: 2
7868855 TGTCCTTTCT
7868865 TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC T
1 TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC T
7868896 TTTTAAATTT
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 29 1.00
ACGTcount: A:0.00, C:0.48, G:0.00, T:0.52
Consensus pattern (2 bp):
TC
Found at i:7869695 original size:2 final size:2
Alignment explanation
Indices: 7869688--7869735 Score: 96
Period size: 2 Copynumber: 24.0 Consensus size: 2
7869678 CTTCTGCCTG
7869688 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
7869730 AT AT AT
1 AT AT AT
7869736 TCACACACAC
Statistics
Matches: 46, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 46 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:7880906 original size:12 final size:12
Alignment explanation
Indices: 7880877--7880937 Score: 52
Period size: 12 Copynumber: 5.0 Consensus size: 12
7880867 TTTTAAAAAT
* *
7880877 TATATTTTTATA
1 TATATATTTAAA
*
7880889 TTTATATTTAAA
1 TATATATTTAAA
7880901 TATATA-TTAAA
1 TATATATTTAAA
* *
7880912 TATAAATATCAAA
1 TATATAT-TTAAA
7880925 TATGATATTTAAA
1 TAT-ATATTTAAA
7880938 AAAAATGAAA
Statistics
Matches: 38, Mismatches: 8, Indels: 5
0.75 0.16 0.10
Matches are distributed among these distances:
11 10 0.26
12 14 0.37
13 11 0.29
14 3 0.08
ACGTcount: A:0.48, C:0.02, G:0.02, T:0.49
Consensus pattern (12 bp):
TATATATTTAAA
Found at i:7892648 original size:20 final size:21
Alignment explanation
Indices: 7892603--7892658 Score: 55
Period size: 20 Copynumber: 2.7 Consensus size: 21
7892593 TAATTTTAAG
7892603 TTTTAAATAA-TATTTATATTA
1 TTTTAAA-AATTATTTATATTA
*
7892624 -ATTAAAAATTATTTA-ATTA
1 TTTTAAAAATTATTTATATTA
*
7892643 TTTTAATATATTATTT
1 TTTTAA-AAATTATTT
7892659 TTAATAAATT
Statistics
Matches: 29, Mismatches: 3, Indels: 6
0.76 0.08 0.16
Matches are distributed among these distances:
19 6 0.21
20 15 0.52
21 8 0.28
ACGTcount: A:0.43, C:0.00, G:0.00, T:0.57
Consensus pattern (21 bp):
TTTTAAAAATTATTTATATTA
Found at i:7892893 original size:19 final size:18
Alignment explanation
Indices: 7892865--7892913 Score: 64
Period size: 19 Copynumber: 2.7 Consensus size: 18
7892855 ATTTTATAAT
*
7892865 TAAATAATTAAATAAAATA
1 TAAATTATTAAAT-AAATA
*
7892884 TAAATTATTAAATAAATT
1 TAAATTATTAAATAAATA
7892902 TAAA-TATTAAAT
1 TAAATTATTAAAT
7892914 TTAAATATGA
Statistics
Matches: 28, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
17 8 0.29
18 8 0.29
19 12 0.43
ACGTcount: A:0.61, C:0.00, G:0.00, T:0.39
Consensus pattern (18 bp):
TAAATTATTAAATAAATA
Found at i:7892914 original size:13 final size:13
Alignment explanation
Indices: 7892896--7892921 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
7892886 AATTATTAAA
7892896 TAAATTTAAATAT
1 TAAATTTAAATAT
7892909 TAAATTTAAATAT
1 TAAATTTAAATAT
7892922 GAGATGTATA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (13 bp):
TAAATTTAAATAT
Found at i:7892918 original size:19 final size:18
Alignment explanation
Indices: 7892864--7892919 Score: 60
Period size: 19 Copynumber: 3.0 Consensus size: 18
7892854 AATTTTATAA
*
7892864 TTAAATAATTAAATAAAAT
1 TTAAAT-ATTAAATTAAAT
*
7892883 ATAAATTATTAAA-TAAAT
1 TTAAA-TATTAAATTAAAT
7892901 TTAAATATTAAATTTAAAT
1 TTAAATATTAAA-TTAAAT
7892920 ATGAGATGTA
Statistics
Matches: 31, Mismatches: 3, Indels: 6
0.77 0.08 0.15
Matches are distributed among these distances:
17 7 0.23
18 8 0.26
19 15 0.48
20 1 0.03
ACGTcount: A:0.59, C:0.00, G:0.00, T:0.41
Consensus pattern (18 bp):
TTAAATATTAAATTAAAT
Found at i:7892976 original size:5 final size:5
Alignment explanation
Indices: 7892966--7893023 Score: 52
Period size: 5 Copynumber: 12.2 Consensus size: 5
7892956 TTTATTTAAA
* * *
7892966 TATAT TATAT TATAT T-TAT TA-AA TATTT TATAT TAATAT CATAT T-T-T
1 TATAT TATAT TATAT TATAT TATAT TATAT TATAT T-ATAT TATAT TATAT
7893013 TATAT TATAT T
1 TATAT TATAT T
7893024 TAAAATTATC
Statistics
Matches: 42, Mismatches: 6, Indels: 10
0.72 0.10 0.17
Matches are distributed among these distances:
3 2 0.05
4 9 0.21
5 27 0.64
6 4 0.10
ACGTcount: A:0.38, C:0.02, G:0.00, T:0.60
Consensus pattern (5 bp):
TATAT
Found at i:7892987 original size:23 final size:24
Alignment explanation
Indices: 7892955--7893000 Score: 76
Period size: 23 Copynumber: 2.0 Consensus size: 24
7892945 AATCATATTG
7892955 ATTTATTTAAATATATTATATTAT
1 ATTTATTTAAATATATTATATTAT
*
7892979 ATTTA-TTAAATATTTTATATTA
1 ATTTATTTAAATATATTATATTA
7893001 ATATCATATT
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
23 16 0.76
24 5 0.24
ACGTcount: A:0.41, C:0.00, G:0.00, T:0.59
Consensus pattern (24 bp):
ATTTATTTAAATATATTATATTAT
Found at i:7894934 original size:17 final size:18
Alignment explanation
Indices: 7894912--7894948 Score: 58
Period size: 17 Copynumber: 2.1 Consensus size: 18
7894902 ATAGCTCAAA
*
7894912 ATTAAAAAA-ATTTATAT
1 ATTAAAAAATATTTAAAT
7894929 ATTAAAAAATATTTAAAT
1 ATTAAAAAATATTTAAAT
7894947 AT
1 AT
7894949 GATAATTTTT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
17 9 0.50
18 9 0.50
ACGTcount: A:0.59, C:0.00, G:0.00, T:0.41
Consensus pattern (18 bp):
ATTAAAAAATATTTAAAT
Found at i:7895871 original size:22 final size:20
Alignment explanation
Indices: 7895830--7895891 Score: 70
Period size: 20 Copynumber: 3.0 Consensus size: 20
7895820 TTTGAAGAAC
7895830 TTTTAAAATATATATATATA
1 TTTTAAAATATATATATATA
* * *
7895850 TTTTAAAATAAATATTTTTA
1 TTTTAAAATATATATATATA
* *
7895870 TATTAAATATATATTTATATA
1 TTTTAAA-ATATATATATATA
7895891 T
1 T
7895892 GATATTAATA
Statistics
Matches: 33, Mismatches: 8, Indels: 1
0.79 0.19 0.02
Matches are distributed among these distances:
20 23 0.70
21 10 0.30
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (20 bp):
TTTTAAAATATATATATATA
Found at i:7896610 original size:40 final size:41
Alignment explanation
Indices: 7896534--7896610 Score: 95
Period size: 40 Copynumber: 1.9 Consensus size: 41
7896524 TTAAAATAAA
* *
7896534 ATAAAATATTAAAATTTATTATTTAAATTTTTTTTATTTAT
1 ATAAAATATTAAAATTTATTATTGAAATTTTATTTATTTAT
* *
7896575 ATAAATTA-TAAAATTTATTAGTTGATA-TTTATTTAT
1 ATAAAATATTAAAATTTATTA-TTGAAATTTTATTTAT
7896611 ATTTTTAATT
Statistics
Matches: 31, Mismatches: 4, Indels: 3
0.82 0.11 0.08
Matches are distributed among these distances:
40 20 0.65
41 11 0.35
ACGTcount: A:0.42, C:0.00, G:0.03, T:0.56
Consensus pattern (41 bp):
ATAAAATATTAAAATTTATTATTGAAATTTTATTTATTTAT
Found at i:7896653 original size:23 final size:24
Alignment explanation
Indices: 7896606--7896655 Score: 66
Period size: 23 Copynumber: 2.1 Consensus size: 24
7896596 TTGATATTTA
* *
7896606 TTTATATTTTTAATTATTAATTAAT
1 TTTATATTTTT-ATTATAAAATAAT
7896631 TTTATATTTTT-TTATAAAATAAT
1 TTTATATTTTTATTATAAAATAAT
7896654 TT
1 TT
7896656 AATAAGTTTA
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
23 12 0.52
25 11 0.48
ACGTcount: A:0.36, C:0.00, G:0.00, T:0.64
Consensus pattern (24 bp):
TTTATATTTTTATTATAAAATAAT
Found at i:7896724 original size:18 final size:18
Alignment explanation
Indices: 7896691--7896726 Score: 54
Period size: 18 Copynumber: 2.0 Consensus size: 18
7896681 TAAATATCTT
* *
7896691 ATCAAATATTATTTTTAA
1 ATCAAATATAAATTTTAA
7896709 ATCAAATATAAATTTTAA
1 ATCAAATATAAATTTTAA
7896727 TAATAAATAA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.50, C:0.06, G:0.00, T:0.44
Consensus pattern (18 bp):
ATCAAATATAAATTTTAA
Found at i:7896755 original size:24 final size:24
Alignment explanation
Indices: 7896706--7896752 Score: 60
Period size: 23 Copynumber: 2.0 Consensus size: 24
7896696 ATATTATTTT
*
7896706 TAAATCAAATATAAATTTTAATAA
1 TAAATCAAATATAAATTTTAAAAA
* *
7896730 TAAAT-AAATTTAATTTTTAAAAA
1 TAAATCAAATATAAATTTTAAAAA
7896753 ATATTAAGTG
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
23 15 0.75
24 5 0.25
ACGTcount: A:0.57, C:0.02, G:0.00, T:0.40
Consensus pattern (24 bp):
TAAATCAAATATAAATTTTAAAAA
Found at i:7905762 original size:13 final size:13
Alignment explanation
Indices: 7905737--7905770 Score: 50
Period size: 13 Copynumber: 2.5 Consensus size: 13
7905727 TGATCAAAAA
7905737 TTATTTAATTTTAT
1 TTATTT-ATTTTAT
7905751 TTATTTATTTTAT
1 TTATTTATTTTAT
*
7905764 ATATTTA
1 TTATTTA
7905771 ATATATTATT
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
13 13 0.68
14 6 0.32
ACGTcount: A:0.29, C:0.00, G:0.00, T:0.71
Consensus pattern (13 bp):
TTATTTATTTTAT
Found at i:7907052 original size:3 final size:3
Alignment explanation
Indices: 7907044--7907068 Score: 50
Period size: 3 Copynumber: 8.3 Consensus size: 3
7907034 CCATGGGGTG
7907044 CAC CAC CAC CAC CAC CAC CAC CAC C
1 CAC CAC CAC CAC CAC CAC CAC CAC C
7907069 TTGTCTTTCT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 22 1.00
ACGTcount: A:0.32, C:0.68, G:0.00, T:0.00
Consensus pattern (3 bp):
CAC
Found at i:7907562 original size:18 final size:17
Alignment explanation
Indices: 7907519--7907572 Score: 53
Period size: 18 Copynumber: 3.2 Consensus size: 17
7907509 TAAAATTAAT
7907519 TTTTA-TTTTTAA-AT-
1 TTTTATTTTTTAATATA
7907533 TTTTATTATTTTAATATA
1 TTTTATT-TTTTAATATA
7907551 TTTTAATTTTTT-ATGATA
1 TTTT-ATTTTTTAAT-ATA
7907569 TTTT
1 TTTT
7907573 TTTACAATAC
Statistics
Matches: 34, Mismatches: 0, Indels: 8
0.81 0.00 0.19
Matches are distributed among these distances:
14 5 0.15
15 1 0.03
16 6 0.18
17 4 0.12
18 15 0.44
19 3 0.09
ACGTcount: A:0.28, C:0.00, G:0.02, T:0.70
Consensus pattern (17 bp):
TTTTATTTTTTAATATA
Found at i:7907917 original size:21 final size:20
Alignment explanation
Indices: 7907893--7907954 Score: 56
Period size: 21 Copynumber: 3.0 Consensus size: 20
7907883 AATTTGATTT
7907893 AAATTATTATATAATAATAAC
1 AAATTATTATATAA-AATAAC
*
7907914 AAATATAATTATA-AAAATATAT
1 AAAT-T-ATTATATAAAATA-AC
7907936 AAA-TATTAATATAAAATAA
1 AAATTATT-ATATAAAATAA
7907955 TATATTTATA
Statistics
Matches: 35, Mismatches: 1, Indels: 11
0.74 0.02 0.23
Matches are distributed among these distances:
19 3 0.09
20 5 0.14
21 14 0.40
22 7 0.20
23 6 0.17
ACGTcount: A:0.63, C:0.02, G:0.00, T:0.35
Consensus pattern (20 bp):
AAATTATTATATAAAATAAC
Found at i:7907921 original size:15 final size:14
Alignment explanation
Indices: 7907901--7907934 Score: 50
Period size: 15 Copynumber: 2.4 Consensus size: 14
7907891 TTAAATTATT
7907901 ATATAATAATAACAA
1 ATATAATAATAA-AA
*
7907916 ATATAATTATAAAA
1 ATATAATAATAAAA
7907930 ATATA
1 ATATA
7907935 TAAATATTAA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
14 7 0.39
15 11 0.61
ACGTcount: A:0.65, C:0.03, G:0.00, T:0.32
Consensus pattern (14 bp):
ATATAATAATAAAA
Found at i:7907957 original size:22 final size:22
Alignment explanation
Indices: 7907895--7907958 Score: 60
Period size: 22 Copynumber: 2.9 Consensus size: 22
7907885 TTTGATTTAA
* * *
7907895 ATTATTATATAATAATAACAAAT
1 ATTAATATAAAATAAT-ATAAAT
7907918 A-TAATTATAAAA-ATATATAAAT
1 ATTAA-TATAAAATA-ATATAAAT
7907940 ATTAATATAAAATAATATA
1 ATTAATATAAAATAATATA
7907959 TTTATATTTT
Statistics
Matches: 34, Mismatches: 3, Indels: 9
0.74 0.07 0.20
Matches are distributed among these distances:
22 21 0.62
23 13 0.38
ACGTcount: A:0.61, C:0.02, G:0.00, T:0.38
Consensus pattern (22 bp):
ATTAATATAAAATAATATAAAT
Found at i:7908546 original size:22 final size:22
Alignment explanation
Indices: 7908490--7908540 Score: 77
Period size: 22 Copynumber: 2.4 Consensus size: 22
7908480 TATTTATTTG
7908490 AATTAATTTTAAAATATTATAA
1 AATTAATTTTAAAATATTATAA
* *
7908512 AATTATTTTTAAAATTTTA-AA
1 AATTAATTTTAAAATATTATAA
7908533 AATTAATT
1 AATTAATT
7908541 AATAAATTTA
Statistics
Matches: 26, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
21 9 0.35
22 17 0.65
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (22 bp):
AATTAATTTTAAAATATTATAA
Found at i:7909902 original size:15 final size:15
Alignment explanation
Indices: 7909853--7909903 Score: 59
Period size: 15 Copynumber: 3.4 Consensus size: 15
7909843 ATATAATTAT
7909853 TTTTAAAATATCATA
1 TTTTAAAATATCATA
* *
7909868 TTTTATAAAT-TTAAA
1 TTTTA-AAATATCATA
*
7909883 ATTTAAAATATCATA
1 TTTTAAAATATCATA
7909898 TTTTAA
1 TTTTAA
7909904 TCTATTGATA
Statistics
Matches: 28, Mismatches: 6, Indels: 4
0.74 0.16 0.11
Matches are distributed among these distances:
14 4 0.14
15 20 0.71
16 4 0.14
ACGTcount: A:0.47, C:0.04, G:0.00, T:0.49
Consensus pattern (15 bp):
TTTTAAAATATCATA
Found at i:7910382 original size:39 final size:34
Alignment explanation
Indices: 7910308--7910385 Score: 93
Period size: 34 Copynumber: 2.1 Consensus size: 34
7910298 ATTTAATATA
* *
7910308 ATTTGATTTAAATTATTATTTAATAATAAAAAAT
1 ATTTTATTTAAATTATTATTAAATAATAAAAAAT
7910342 ATTTTATTTAAATTTAATTATTAAATATATAAAAATAAT
1 ATTTTATTTAAA-TT-ATTATTAAATA-AT-AAAA-AAT
7910381 ATTTT
1 ATTTT
7910386 CATAATATTT
Statistics
Matches: 37, Mismatches: 2, Indels: 5
0.84 0.05 0.11
Matches are distributed among these distances:
34 11 0.30
35 2 0.05
36 10 0.27
37 2 0.05
38 4 0.11
39 8 0.22
ACGTcount: A:0.49, C:0.00, G:0.01, T:0.50
Consensus pattern (34 bp):
ATTTTATTTAAATTATTATTAAATAATAAAAAAT
Found at i:7910396 original size:39 final size:35
Alignment explanation
Indices: 7910315--7910385 Score: 83
Period size: 36 Copynumber: 2.0 Consensus size: 35
7910305 ATAATTTGAT
*
7910315 TTAAA-TT-ATTATTTAATAATAAAAAATATTTTA
1 TTAAATTTAATTATTAAATAATAAAAAATATTTTA
7910348 TTTAAATTTAATTATTAAATATATAAAAATAATATTTT
1 -TTAAATTTAATTATTAAATA-AT-AAAA-AATATTTT
7910386 CATAATATTT
Statistics
Matches: 31, Mismatches: 1, Indels: 5
0.84 0.03 0.14
Matches are distributed among these distances:
34 5 0.16
35 2 0.06
36 10 0.32
37 2 0.06
38 4 0.13
39 8 0.26
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (35 bp):
TTAAATTTAATTATTAAATAATAAAAAATATTTTA
Found at i:7914433 original size:14 final size:14
Alignment explanation
Indices: 7914410--7914468 Score: 55
Period size: 14 Copynumber: 3.9 Consensus size: 14
7914400 TTTCATAAAT
*
7914410 ATAAAAATAATATA
1 ATAAACATAATATA
7914424 ATAAACATAATATAA
1 ATAAACATAATAT-A
*
7914439 ATATAACATTATATTTA
1 ATA-AACA-TA-ATATA
*
7914456 ATAAATATAATAT
1 ATAAACATAATAT
7914469 TATACGTTAA
Statistics
Matches: 37, Mismatches: 4, Indels: 8
0.76 0.08 0.16
Matches are distributed among these distances:
14 15 0.41
15 6 0.16
16 7 0.19
17 6 0.16
18 3 0.08
ACGTcount: A:0.61, C:0.03, G:0.00, T:0.36
Consensus pattern (14 bp):
ATAAACATAATATA
Found at i:7914461 original size:21 final size:22
Alignment explanation
Indices: 7914435--7914486 Score: 70
Period size: 21 Copynumber: 2.4 Consensus size: 22
7914425 TAAACATAAT
*
7914435 ATAAATATAACATTATA-TTTA
1 ATAAATATAACATTATACGTTA
*
7914456 ATAAATATAATATTATACGTTA
1 ATAAATATAACATTATACGTTA
7914478 AGTAAATAT
1 A-TAAATAT
7914487 TATTAATATG
Statistics
Matches: 27, Mismatches: 2, Indels: 2
0.87 0.06 0.06
Matches are distributed among these distances:
21 16 0.59
22 4 0.15
23 7 0.26
ACGTcount: A:0.52, C:0.04, G:0.04, T:0.40
Consensus pattern (22 bp):
ATAAATATAACATTATACGTTA
Found at i:7923188 original size:36 final size:36
Alignment explanation
Indices: 7923148--7923236 Score: 103
Period size: 36 Copynumber: 2.4 Consensus size: 36
7923138 TTTAAAATTT
*
7923148 ATATTATTATTTAAATAATATTAAAAAA-TTATAT-TA
1 ATATTATAATTTAAATAA-A-TAAAAAATTTATATATA
7923184 ATATTTATAATTTAAAATAAATAAAAAATTTATATATA
1 ATA-TTATAATTT-AAATAAATAAAAAATTTATATATA
*
7923222 A-ATAATAATTTAAAT
1 ATATTATAATTTAAAT
7923237 TAAAATTGAT
Statistics
Matches: 47, Mismatches: 2, Indels: 9
0.81 0.03 0.16
Matches are distributed among these distances:
35 4 0.09
36 18 0.38
37 16 0.34
38 9 0.19
ACGTcount: A:0.56, C:0.00, G:0.00, T:0.44
Consensus pattern (36 bp):
ATATTATAATTTAAATAAATAAAAAATTTATATATA
Found at i:7923213 original size:18 final size:17
Alignment explanation
Indices: 7923192--7923240 Score: 53
Period size: 18 Copynumber: 2.8 Consensus size: 17
7923182 TAATATTTAT
7923192 AATTTAAAATAAATAAAA
1 AATTTAAAATAAAT-AAA
* *
7923210 AATTTATATATAAATAAT
1 AATTTA-AAATAAATAAA
*
7923228 AATTTAAATTAAA
1 AATTTAAAATAAA
7923241 ATTGATGATT
Statistics
Matches: 26, Mismatches: 4, Indels: 3
0.79 0.12 0.09
Matches are distributed among these distances:
17 5 0.19
18 14 0.54
19 7 0.27
ACGTcount: A:0.63, C:0.00, G:0.00, T:0.37
Consensus pattern (17 bp):
AATTTAAAATAAATAAA
Found at i:7923242 original size:18 final size:18
Alignment explanation
Indices: 7923190--7923257 Score: 50
Period size: 18 Copynumber: 3.7 Consensus size: 18
7923180 ATTAATATTT
*
7923190 ATAATTTAAAAT-AAATAA
1 ATAATTTAAATTAAAAT-A
* *
7923208 AAAATTTATA-TATAAATA
1 ATAATTTAAATTA-AAATA
*
7923226 ATAATTTAAATTAAAATTG
1 ATAATTTAAATTAAAA-TA
*
7923245 ATGATTTAAATTA
1 ATAATTTAAATTA
7923258 CTAAAATATT
Statistics
Matches: 40, Mismatches: 6, Indels: 7
0.75 0.11 0.13
Matches are distributed among these distances:
17 1 0.03
18 20 0.50
19 19 0.47
ACGTcount: A:0.57, C:0.00, G:0.03, T:0.40
Consensus pattern (18 bp):
ATAATTTAAATTAAAATA
Found at i:7923491 original size:19 final size:18
Alignment explanation
Indices: 7923463--7923514 Score: 50
Period size: 19 Copynumber: 2.8 Consensus size: 18
7923453 TATAATTTGT
*
7923463 ATTATAAAAATTTTAATAA
1 ATTATTAAAATTTT-ATAA
* *
7923482 ATTATTAAAAATTTATAT
1 ATTATTAAAATTTTATAA
*
7923500 TTTATTTAAAATTTT
1 ATTA-TTAAAATTTT
7923515 TATATTATAT
Statistics
Matches: 27, Mismatches: 5, Indels: 2
0.79 0.15 0.06
Matches are distributed among these distances:
18 6 0.22
19 21 0.78
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (18 bp):
ATTATTAAAATTTTATAA
Found at i:7923522 original size:18 final size:18
Alignment explanation
Indices: 7923462--7923522 Score: 61
Period size: 18 Copynumber: 3.3 Consensus size: 18
7923452 GTATAATTTG
7923462 TATTA-TAAAAATTTTAATA
1 TATTATTAAAAA-TTT-ATA
*
7923481 AATTATTAAAAATTTATA
1 TATTATTAAAAATTTATA
* * *
7923499 TTTTATTTAAAATTTTTA
1 TATTATTAAAAATTTATA
7923517 TATTAT
1 TATTAT
7923523 ATTATATTTA
Statistics
Matches: 35, Mismatches: 6, Indels: 3
0.80 0.14 0.07
Matches are distributed among these distances:
18 22 0.63
19 7 0.20
20 6 0.17
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (18 bp):
TATTATTAAAAATTTATA
Found at i:7923524 original size:25 final size:24
Alignment explanation
Indices: 7923494--7923552 Score: 93
Period size: 25 Copynumber: 2.5 Consensus size: 24
7923484 TATTAAAAAT
7923494 TTATATTTTATTTAAAATTTTTATA
1 TTATATTTTATTTAAAATTTTTA-A
*
7923519 TTATATTATATTTAAAATTTTTAA
1 TTATATTTTATTTAAAATTTTTAA
7923543 TTAT-TTTTAT
1 TTATATTTTAT
7923553 ATAATATTAC
Statistics
Matches: 32, Mismatches: 2, Indels: 2
0.89 0.06 0.06
Matches are distributed among these distances:
23 5 0.16
24 5 0.16
25 22 0.69
ACGTcount: A:0.36, C:0.00, G:0.00, T:0.64
Consensus pattern (24 bp):
TTATATTTTATTTAAAATTTTTAA
Found at i:7925275 original size:17 final size:16
Alignment explanation
Indices: 7925253--7925308 Score: 53
Period size: 17 Copynumber: 3.4 Consensus size: 16
7925243 TTATTTATAA
7925253 TTAAATTTAAATAATTT
1 TTAAATTTAAATAA-TT
*
7925270 TTAAATTTATATTAA-T
1 TTAAATTTA-AATAATT
7925286 TTAAA-TTAAATTAATAT
1 TTAAATTTAAA-TAAT-T
7925303 TTAAAT
1 TTAAAT
7925309 AATAAAAATG
Statistics
Matches: 32, Mismatches: 2, Indels: 9
0.74 0.05 0.21
Matches are distributed among these distances:
14 1 0.03
15 6 0.19
16 6 0.19
17 15 0.47
18 4 0.12
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (16 bp):
TTAAATTTAAATAATT
Found at i:7925296 original size:21 final size:21
Alignment explanation
Indices: 7925245--7925303 Score: 63
Period size: 21 Copynumber: 3.0 Consensus size: 21
7925235 TGATACAGTT
*
7925245 ATTTATAATTAAATTTA-AATA
1 ATTTA-AATTAAATTTATATTA
7925266 ATTT---TTAAATTTATATTA
1 ATTTAAATTAAATTTATATTA
*
7925284 ATTTAAATTAAATTAATATT
1 ATTTAAATTAAATTTATATT
7925304 TAAATAATAA
Statistics
Matches: 32, Mismatches: 2, Indels: 8
0.76 0.05 0.19
Matches are distributed among these distances:
17 9 0.28
18 7 0.22
21 16 0.50
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (21 bp):
ATTTAAATTAAATTTATATTA
Found at i:7925300 original size:15 final size:16
Alignment explanation
Indices: 7925253--7925300 Score: 55
Period size: 17 Copynumber: 3.0 Consensus size: 16
7925243 TTATTTATAA
7925253 TTAAATTTAAA-TAATTT
1 TTAAATTTAAATTAA--T
*
7925270 TTAAATTTATATTAAT
1 TTAAATTTAAATTAAT
7925286 TTAAA-TTAAATTAAT
1 TTAAATTTAAATTAAT
7925301 ATTTAAATAA
Statistics
Matches: 28, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
15 9 0.32
16 6 0.21
17 10 0.36
18 3 0.11
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (16 bp):
TTAAATTTAAATTAAT
Found at i:7929907 original size:33 final size:33
Alignment explanation
Indices: 7929864--7929960 Score: 85
Period size: 33 Copynumber: 2.9 Consensus size: 33
7929854 CAAATACAAC
*
7929864 ATAAAATTATTAAAATTTAAATAATTTAAATAT
1 ATAAATTTATTAAAATTTAAATAATTTAAATAT
* * *
7929897 ATAAATTTATT-TAATTTAAAATAATTAAAAAAT
1 ATAAATTTATTAAAATTT-AAATAATTTAAATAT
*
7929930 -TAAAATAATTTTTAAAATTT-AA-AATTTAAAT
1 AT-AAAT--TTATTAAAATTTAAATAATTTAAAT
7929961 TAATTTAATT
Statistics
Matches: 51, Mismatches: 8, Indels: 10
0.74 0.12 0.14
Matches are distributed among these distances:
32 6 0.12
33 34 0.67
34 2 0.04
35 4 0.08
36 5 0.10
ACGTcount: A:0.57, C:0.00, G:0.00, T:0.43
Consensus pattern (33 bp):
ATAAATTTATTAAAATTTAAATAATTTAAATAT
Found at i:7929967 original size:17 final size:16
Alignment explanation
Indices: 7929873--7929976 Score: 58
Period size: 18 Copynumber: 6.4 Consensus size: 16
7929863 CATAAAATTA
7929873 TTAAAATTTAAATAAT
1 TTAAAATTTAAATAAT
* *
7929889 TTAAATATATAAATTTAT
1 TTAAA-ATTTAAA-TAAT
7929907 TT--AATTTAAAATAAT
1 TTAAAATTT-AAATAAT
* *
7929922 TAAAAAATTAAAATAATTT
1 T-TAAAATTTAAATAA--T
7929941 TTAAAATTT-AA-AAT
1 TTAAAATTTAAATAAT
*
7929955 TT-AAA-TTAATTTAAT
1 TTAAAATTTAA-ATAAT
7929970 TTAAAAT
1 TTAAAAT
7929977 CAATTAATAT
Statistics
Matches: 66, Mismatches: 9, Indels: 25
0.66 0.09 0.25
Matches are distributed among these distances:
12 2 0.03
13 4 0.06
14 3 0.05
15 12 0.18
16 14 0.21
17 14 0.21
18 15 0.23
19 2 0.03
ACGTcount: A:0.55, C:0.00, G:0.00, T:0.45
Consensus pattern (16 bp):
TTAAAATTTAAATAAT
Found at i:7931212 original size:25 final size:25
Alignment explanation
Indices: 7931157--7931213 Score: 73
Period size: 25 Copynumber: 2.3 Consensus size: 25
7931147 TATGAGATTT
7931157 TATTTTTAAAAAAAATATTTACTTAA
1 TATTTTTAAAAAAAATATTTA-TTAA
*
7931183 T-TTTTTAAAAAAATTAATTT-TTAA
1 TATTTTTAAAAAAAAT-ATTTATTAA
7931207 TATTTTT
1 TATTTTT
7931214 TTTTATCTTG
Statistics
Matches: 28, Mismatches: 1, Indels: 5
0.82 0.03 0.15
Matches are distributed among these distances:
24 5 0.18
25 18 0.64
26 5 0.18
ACGTcount: A:0.44, C:0.02, G:0.00, T:0.54
Consensus pattern (25 bp):
TATTTTTAAAAAAAATATTTATTAA
Found at i:7931422 original size:25 final size:23
Alignment explanation
Indices: 7931394--7931441 Score: 60
Period size: 23 Copynumber: 2.0 Consensus size: 23
7931384 TAATGTATAA
7931394 ACATATATATAATAAAAATATATTT
1 ACATATATAT-AT-AAAATATATTT
* *
7931419 ACATATTTATATAATATATATTT
1 ACATATATATATAAAATATATTT
7931442 TATTAAAAAC
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
23 10 0.48
24 2 0.10
25 9 0.43
ACGTcount: A:0.50, C:0.04, G:0.00, T:0.46
Consensus pattern (23 bp):
ACATATATATATAAAATATATTT
Found at i:7931508 original size:18 final size:19
Alignment explanation
Indices: 7931478--7931520 Score: 63
Period size: 18 Copynumber: 2.3 Consensus size: 19
7931468 AAATATATAT
7931478 ATATATAATATTTAAAA-A
1 ATATATAATATTTAAAATA
7931496 ATAT-TAATAATTTAAAATA
1 ATATATAAT-ATTTAAAATA
7931515 ATATAT
1 ATATAT
7931521 CAAAATATCT
Statistics
Matches: 22, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
17 4 0.18
18 12 0.55
19 5 0.23
20 1 0.05
ACGTcount: A:0.58, C:0.00, G:0.00, T:0.42
Consensus pattern (19 bp):
ATATATAATATTTAAAATA
Found at i:7932155 original size:3 final size:3
Alignment explanation
Indices: 7932149--7932179 Score: 62
Period size: 3 Copynumber: 10.3 Consensus size: 3
7932139 TAATAATAAT
7932149 AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG A
1 AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG A
7932180 TTGTGTTAAA
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 28 1.00
ACGTcount: A:0.68, C:0.00, G:0.32, T:0.00
Consensus pattern (3 bp):
AAG
Found at i:7932660 original size:5 final size:6
Alignment explanation
Indices: 7932636--7932669 Score: 50
Period size: 6 Copynumber: 5.7 Consensus size: 6
7932626 TATATCAACC
* *
7932636 TTCCCT TCCCCT TTCCCT TTCCTT TTCCCT TTCC
1 TTCCCT TTCCCT TTCCCT TTCCCT TTCCCT TTCC
7932670 TACTTTTATT
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
6 24 1.00
ACGTcount: A:0.00, C:0.50, G:0.00, T:0.50
Consensus pattern (6 bp):
TTCCCT
Found at i:7935358 original size:20 final size:20
Alignment explanation
Indices: 7935322--7935359 Score: 51
Period size: 20 Copynumber: 1.9 Consensus size: 20
7935312 GAAAAATATA
*
7935322 AATATTAGTATTTTATTTTT
1 AATATTAGTATTATATTTTT
7935342 AATATTA-TGATTATATTT
1 AATATTAGT-ATTATATTT
7935360 AACTTTTTTT
Statistics
Matches: 16, Mismatches: 1, Indels: 2
0.84 0.05 0.11
Matches are distributed among these distances:
19 1 0.06
20 15 0.94
ACGTcount: A:0.34, C:0.00, G:0.05, T:0.61
Consensus pattern (20 bp):
AATATTAGTATTATATTTTT
Found at i:7936000 original size:1 final size:1
Alignment explanation
Indices: 7935994--7936018 Score: 50
Period size: 1 Copynumber: 25.0 Consensus size: 1
7935984 AAGGAAAGAG
7935994 TTTTTTTTTTTTTTTTTTTTTTTTT
1 TTTTTTTTTTTTTTTTTTTTTTTTT
7936019 CTGGGATTTG
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
1 24 1.00
ACGTcount: A:0.00, C:0.00, G:0.00, T:1.00
Consensus pattern (1 bp):
T
Found at i:7939424 original size:2 final size:2
Alignment explanation
Indices: 7939417--7939448 Score: 55
Period size: 2 Copynumber: 16.0 Consensus size: 2
7939407 AAGCAAAATG
*
7939417 GA GA GA GA GA GA GA GA GA GA GG GA GA GA GA GA
1 GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA
7939449 CTTATTTGAG
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
2 28 1.00
ACGTcount: A:0.47, C:0.00, G:0.53, T:0.00
Consensus pattern (2 bp):
GA
Found at i:7939812 original size:21 final size:21
Alignment explanation
Indices: 7939754--7939813 Score: 59
Period size: 21 Copynumber: 2.8 Consensus size: 21
7939744 ATAAATATAA
* *
7939754 TATATTTATTTTTTCAATTTTT
1 TATATTTA-TATTTAAATTTTT
**
7939776 TATATATT-TAAATAAATTTTT
1 TATAT-TTATATTTAAATTTTT
7939797 TATATTTATATTTAAAT
1 TATATTTATATTTAAAT
7939814 ATATATTTAA
Statistics
Matches: 30, Mismatches: 6, Indels: 5
0.73 0.15 0.12
Matches are distributed among these distances:
20 2 0.07
21 21 0.70
22 5 0.17
23 2 0.07
ACGTcount: A:0.35, C:0.02, G:0.00, T:0.63
Consensus pattern (21 bp):
TATATTTATATTTAAATTTTT
Found at i:7939818 original size:12 final size:12
Alignment explanation
Indices: 7939776--7939824 Score: 53
Period size: 12 Copynumber: 4.0 Consensus size: 12
7939766 TTCAATTTTT
7939776 TATATATTTAAA
1 TATATATTTAAA
* * *
7939788 TAAATTTTTTATA
1 TATA-TATTTAAA
*
7939801 TTTATATTTAAA
1 TATATATTTAAA
7939813 TATATATTTAAA
1 TATATATTTAAA
7939825 AAAATAAAAA
Statistics
Matches: 28, Mismatches: 8, Indels: 2
0.74 0.21 0.05
Matches are distributed among these distances:
12 20 0.71
13 8 0.29
ACGTcount: A:0.45, C:0.00, G:0.00, T:0.55
Consensus pattern (12 bp):
TATATATTTAAA
Found at i:7940432 original size:23 final size:22
Alignment explanation
Indices: 7940384--7940432 Score: 57
Period size: 23 Copynumber: 2.2 Consensus size: 22
7940374 ATAATTAAAA
7940384 AAAATTATAAATATTAAATATT
1 AAAATTATAAATATTAAATATT
*
7940406 -AAATGTATTAAATATT-AATTTT
1 AAAAT-TA-TAAATATTAAATATT
7940428 AAAAT
1 AAAAT
7940433 AATTATATAA
Statistics
Matches: 23, Mismatches: 1, Indels: 5
0.79 0.03 0.17
Matches are distributed among these distances:
21 4 0.17
22 7 0.30
23 12 0.52
ACGTcount: A:0.55, C:0.00, G:0.02, T:0.43
Consensus pattern (22 bp):
AAAATTATAAATATTAAATATT
Found at i:7941685 original size:22 final size:22
Alignment explanation
Indices: 7941660--7941703 Score: 54
Period size: 22 Copynumber: 2.0 Consensus size: 22
7941650 TTATATATTT
7941660 TATA-ATTAAATTTAAATAAAAA
1 TATATATT-AATTTAAATAAAAA
* *
7941682 TATATATTATTTTAATTAAAAA
1 TATATATTAATTTAAATAAAAA
7941704 ATCTGTTACA
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
22 16 0.84
23 3 0.16
ACGTcount: A:0.57, C:0.00, G:0.00, T:0.43
Consensus pattern (22 bp):
TATATATTAATTTAAATAAAAA
Found at i:7946442 original size:11 final size:11
Alignment explanation
Indices: 7946426--7946451 Score: 52
Period size: 11 Copynumber: 2.4 Consensus size: 11
7946416 GGTATATTTA
7946426 ATTTTTTATAT
1 ATTTTTTATAT
7946437 ATTTTTTATAT
1 ATTTTTTATAT
7946448 ATTT
1 ATTT
7946452 AAAAAATTAA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 15 1.00
ACGTcount: A:0.27, C:0.00, G:0.00, T:0.73
Consensus pattern (11 bp):
ATTTTTTATAT
Found at i:7946693 original size:41 final size:42
Alignment explanation
Indices: 7946642--7946730 Score: 112
Period size: 41 Copynumber: 2.1 Consensus size: 42
7946632 CCTAAATACG
7946642 AAATATAATAT-ATAAAAATAATATAATATA-TAAATATTT-TA
1 AAATATAATATAATAAAAATAAT-TAATATATTAAA-ATTTATA
* * *
7946683 AAATTTAATATAATATAAATTATTAATATATTAAAATTTATA
1 AAATATAATATAATAAAAATAATTAATATATTAAAATTTATA
7946725 AAATAT
1 AAATAT
7946731 TTTAAATTTA
Statistics
Matches: 41, Mismatches: 4, Indels: 5
0.82 0.08 0.10
Matches are distributed among these distances:
41 21 0.51
42 20 0.49
ACGTcount: A:0.58, C:0.00, G:0.00, T:0.42
Consensus pattern (42 bp):
AAATATAATATAATAAAAATAATTAATATATTAAAATTTATA
Found at i:7946697 original size:33 final size:32
Alignment explanation
Indices: 7946659--7946730 Score: 92
Period size: 33 Copynumber: 2.2 Consensus size: 32
7946649 ATATATAAAA
*
7946659 ATAATAT-AATATATAAATATTTTAAAATTTAAT
1 ATAATATAAAT-TATAAATATATTAAAATTT-AT
*
7946692 ATAATATAAATTATTAATATATTAAAATTTAT
1 ATAATATAAATTATAAATATATTAAAATTTAT
*
7946724 AAAATAT
1 ATAATAT
7946731 TTTAAATTTA
Statistics
Matches: 35, Mismatches: 3, Indels: 3
0.85 0.07 0.07
Matches are distributed among these distances:
32 8 0.23
33 24 0.69
34 3 0.09
ACGTcount: A:0.56, C:0.00, G:0.00, T:0.44
Consensus pattern (32 bp):
ATAATATAAATTATAAATATATTAAAATTTAT
Found at i:7946723 original size:18 final size:18
Alignment explanation
Indices: 7946687--7946746 Score: 52
Period size: 18 Copynumber: 3.3 Consensus size: 18
7946677 ATTTTAAAAT
*
7946687 TTAATATAATATAAA-TTA
1 TTAATATATTA-AAATTTA
7946705 TTAATATATTAAAATTTA
1 TTAATATATTAAAATTTA
* *
7946723 -TAAAATATTTTAAATTTA
1 TTAATATA-TTAAAATTTA
*
7946741 ATAATA
1 TTAATA
7946747 ATTTGACAAT
Statistics
Matches: 35, Mismatches: 4, Indels: 5
0.80 0.09 0.11
Matches are distributed among these distances:
17 9 0.26
18 22 0.63
19 4 0.11
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (18 bp):
TTAATATATTAAAATTTA
Found at i:7946746 original size:17 final size:17
Alignment explanation
Indices: 7946674--7946746 Score: 60
Period size: 17 Copynumber: 4.2 Consensus size: 17
7946664 ATAATATATA
7946674 AATATTTTAAAATTTAAT
1 AATATTTT-AAATTTAAT
* * *
7946692 -ATAATATAAA-TTATT
1 AATATTTTAAATTTAAT
* *
7946707 AATATATTAAAATTTATAA
1 AATAT-TTTAAATTTA-AT
7946726 AATATTTTAAATTTAAT
1 AATATTTTAAATTTAAT
7946743 AATA
1 AATA
7946747 ATTTGACAAT
Statistics
Matches: 41, Mismatches: 10, Indels: 9
0.68 0.17 0.15
Matches are distributed among these distances:
15 4 0.10
16 6 0.15
17 14 0.34
18 12 0.29
19 5 0.12
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (17 bp):
AATATTTTAAATTTAAT
Found at i:7946750 original size:18 final size:18
Alignment explanation
Indices: 7946677--7946750 Score: 50
Period size: 18 Copynumber: 4.2 Consensus size: 18
7946667 ATATATAAAT
7946677 ATTTTAAAATTTAAT-ATA
1 ATTTT-AAATTTAATAATA
* *
7946695 A-TATAAA-TTATTAAT-
1 ATTTTAAATTTAATAATA
* *
7946710 ATATTAAAATTT-ATAAAA
1 AT-TTTAAATTTAATAATA
7946728 TATTTTAAATTTAATAATA
1 -ATTTTAAATTTAATAATA
7946747 ATTT
1 ATTT
7946751 GACAATTATT
Statistics
Matches: 41, Mismatches: 8, Indels: 14
0.65 0.13 0.22
Matches are distributed among these distances:
15 5 0.12
16 5 0.12
17 9 0.22
18 15 0.37
19 7 0.17
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (18 bp):
ATTTTAAATTTAATAATA
Found at i:7947718 original size:17 final size:16
Alignment explanation
Indices: 7947695--7947740 Score: 56
Period size: 18 Copynumber: 2.7 Consensus size: 16
7947685 CAAATGTATA
7947695 ATTTTAAGATTTAAATT
1 ATTTTAA-ATTTAAATT
*
7947712 TTTTTAAAAATTTAAATT
1 ATTTT--AAATTTAAATT
7947730 ATTTTAAATTT
1 ATTTTAAATTT
7947741 TATATAAAGT
Statistics
Matches: 25, Mismatches: 2, Indels: 5
0.78 0.06 0.16
Matches are distributed among these distances:
16 6 0.24
17 4 0.16
18 13 0.52
19 2 0.08
ACGTcount: A:0.41, C:0.00, G:0.02, T:0.57
Consensus pattern (16 bp):
ATTTTAAATTTAAATT
Done.