Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Scaffold1
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 8764944
ACGTcount: A:0.31, C:0.15, G:0.15, T:0.31
Warning! 632878 characters in sequence are not A, C, G, or T
File 51 of 52
Found at i:8249659 original size:13 final size:13
Alignment explanation
Indices: 8249641--8249665 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
8249631 TCAAATATTT
8249641 ATATATTTATATC
1 ATATATTTATATC
8249654 ATATATTTATAT
1 ATATATTTATAT
8249666 TTTATTTATA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.40, C:0.04, G:0.00, T:0.56
Consensus pattern (13 bp):
ATATATTTATATC
Found at i:8249706 original size:20 final size:20
Alignment explanation
Indices: 8249633--8249706 Score: 52
Period size: 20 Copynumber: 3.9 Consensus size: 20
8249623 TTAATTAATC
* *
8249633 AAATATTTATATATTTATATC
1 AAATA-TTATATATTTATTTA
*
8249654 ATATATT-TATATTTTATTTA
1 AAATATTATATA-TTTATTTA
*
8249674 TAATA--AT-TA--TATTTA
1 AAATATTATATATTTATTTA
8249689 AAATATTATATATTTATT
1 AAATATTATATATTTATT
8249707 CAAATTTTAA
Statistics
Matches: 40, Mismatches: 6, Indels: 15
0.66 0.10 0.25
Matches are distributed among these distances:
15 10 0.25
17 2 0.05
18 4 0.10
19 5 0.12
20 15 0.38
21 4 0.10
ACGTcount: A:0.42, C:0.01, G:0.00, T:0.57
Consensus pattern (20 bp):
AAATATTATATATTTATTTA
Found at i:8249752 original size:17 final size:18
Alignment explanation
Indices: 8249717--8249772 Score: 55
Period size: 18 Copynumber: 3.1 Consensus size: 18
8249707 CAAATTTTAA
*
8249717 TATATTAATAATT-TATAT
1 TATATT-ATTATTATATAT
8249735 TATATT-TT-TTGATATAT
1 TATATTATTATT-ATATAT
8249752 TCATATTATTATTATATAT
1 T-ATATTATTATTATATAT
8249771 TA
1 TA
8249773 CATAATCATA
Statistics
Matches: 32, Mismatches: 1, Indels: 10
0.74 0.02 0.23
Matches are distributed among these distances:
15 2 0.06
16 1 0.03
17 6 0.19
18 12 0.38
19 9 0.28
20 2 0.06
ACGTcount: A:0.38, C:0.02, G:0.02, T:0.59
Consensus pattern (18 bp):
TATATTATTATTATATAT
Found at i:8249752 original size:30 final size:29
Alignment explanation
Indices: 8249711--8249768 Score: 73
Period size: 30 Copynumber: 2.0 Consensus size: 29
8249701 TTTATTCAAA
8249711 TTTTAATATATTAATAATT-TATATTATATT
1 TTTTAATATATTAAT-ATTAT-TATTATATT
* *
8249741 TTTTGATATATTCATATTATTATTATAT
1 TTTTAATATATTAATATTATTATTATAT
8249769 ATTACATAAT
Statistics
Matches: 25, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
29 11 0.44
30 14 0.56
ACGTcount: A:0.36, C:0.02, G:0.02, T:0.60
Consensus pattern (29 bp):
TTTTAATATATTAATATTATTATTATATT
Found at i:8250517 original size:8 final size:8
Alignment explanation
Indices: 8250502--8250540 Score: 55
Period size: 8 Copynumber: 5.1 Consensus size: 8
8250492 TGTTCAATCG
8250502 AAAAAGAA
1 AAAAAGAA
*
8250510 AGAAAGAA
1 AAAAAGAA
8250518 AAAAAG--
1 AAAAAGAA
8250524 AAAAAGAA
1 AAAAAGAA
8250532 AAAAAGAA
1 AAAAAGAA
8250540 A
1 A
8250541 GGAAAAAATA
Statistics
Matches: 27, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
6 6 0.22
8 21 0.78
ACGTcount: A:0.85, C:0.00, G:0.15, T:0.00
Consensus pattern (8 bp):
AAAAAGAA
Found at i:8250520 original size:14 final size:13
Alignment explanation
Indices: 8250501--8250548 Score: 53
Period size: 14 Copynumber: 3.5 Consensus size: 13
8250491 GTGTTCAATC
8250501 GAAAAAGAAAGAAA
1 GAAAAA-AAAGAAA
8250515 G-AAAAAAAGAAA
1 GAAAAAAAAGAAA
*
8250527 AAGAAAAAAAGAAA
1 GA-AAAAAAAGAAA
8250541 GGAAAAAA
1 -GAAAAAA
8250549 TATTTATGTA
Statistics
Matches: 29, Mismatches: 2, Indels: 6
0.78 0.05 0.16
Matches are distributed among these distances:
12 7 0.24
13 4 0.14
14 17 0.59
15 1 0.03
ACGTcount: A:0.81, C:0.00, G:0.19, T:0.00
Consensus pattern (13 bp):
GAAAAAAAAGAAA
Found at i:8250565 original size:14 final size:15
Alignment explanation
Indices: 8250548--8250576 Score: 51
Period size: 14 Copynumber: 2.0 Consensus size: 15
8250538 AAAGGAAAAA
8250548 ATATTTATG-TATTT
1 ATATTTATGTTATTT
8250562 ATATTTATGTTATTT
1 ATATTTATGTTATTT
8250577 TTTATTTAAA
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 9 0.64
15 5 0.36
ACGTcount: A:0.28, C:0.00, G:0.07, T:0.66
Consensus pattern (15 bp):
ATATTTATGTTATTT
Found at i:8250614 original size:19 final size:19
Alignment explanation
Indices: 8250592--8250632 Score: 57
Period size: 19 Copynumber: 2.2 Consensus size: 19
8250582 TTAAATATTA
8250592 TATTT-TTACATAAATTTTT
1 TATTTATTA-ATAAATTTTT
*
8250611 TATTTATTAATAATTTTTT
1 TATTTATTAATAAATTTTT
8250630 TAT
1 TAT
8250633 ATATATTTTT
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
19 17 0.85
20 3 0.15
ACGTcount: A:0.32, C:0.02, G:0.00, T:0.66
Consensus pattern (19 bp):
TATTTATTAATAAATTTTT
Found at i:8250630 original size:32 final size:31
Alignment explanation
Indices: 8250573--8250659 Score: 86
Period size: 32 Copynumber: 2.7 Consensus size: 31
8250563 TATTTATGTT
8250573 ATTTTTTATTTAAATATTATATTTTTACATAA
1 ATTTTTTATTTAAATA-TATATTTTTACATAA
* * *
8250605 ATTTTTTATTTATTAATA-ATTTTTTTATATAT
1 ATTTTTTATTTA--AATATATATTTTTACATAA
* *
8250637 ATTTTTATATGTATATATATATT
1 ATTTTT-TATTTAAATATATATT
8250660 CGTATTATAT
Statistics
Matches: 45, Mismatches: 6, Indels: 8
0.76 0.10 0.14
Matches are distributed among these distances:
31 3 0.07
32 33 0.73
33 5 0.11
34 4 0.09
ACGTcount: A:0.34, C:0.01, G:0.01, T:0.63
Consensus pattern (31 bp):
ATTTTTTATTTAAATATATATTTTTACATAA
Found at i:8250714 original size:26 final size:27
Alignment explanation
Indices: 8250685--8250736 Score: 70
Period size: 27 Copynumber: 2.0 Consensus size: 27
8250675 TATTATTTTC
*
8250685 ATATTATGTTTA-AATATTTTTTATAA
1 ATATTATATTTATAATATTTTTTATAA
* *
8250711 ATATTGTATTTATATTATTTTTTATA
1 ATATTATATTTATAATATTTTTTATA
8250737 TTATTAAAAT
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
26 10 0.45
27 12 0.55
ACGTcount: A:0.35, C:0.00, G:0.04, T:0.62
Consensus pattern (27 bp):
ATATTATATTTATAATATTTTTTATAA
Found at i:8250724 original size:15 final size:13
Alignment explanation
Indices: 8250695--8250736 Score: 50
Period size: 13 Copynumber: 3.2 Consensus size: 13
8250685 ATATTATGTT
8250695 TAAATATTTTTTA
1 TAAATATTTTTTA
8250708 TAAATATTGTATTTA
1 TAAATATT-T-TTTA
*
8250723 T-ATTATTTTTTA
1 TAAATATTTTTTA
8250735 TA
1 TA
8250737 TTATTAAAAT
Statistics
Matches: 25, Mismatches: 1, Indels: 6
0.78 0.03 0.19
Matches are distributed among these distances:
12 5 0.20
13 9 0.36
14 6 0.24
15 5 0.20
ACGTcount: A:0.36, C:0.00, G:0.02, T:0.62
Consensus pattern (13 bp):
TAAATATTTTTTA
Found at i:8250901 original size:11 final size:11
Alignment explanation
Indices: 8250887--8250941 Score: 65
Period size: 11 Copynumber: 4.7 Consensus size: 11
8250877 TATATTCGTA
8250887 TTTTATTTATT
1 TTTTATTTATT
*
8250898 TTTTATATTATA
1 TTTTAT-TTATT
*
8250910 TTTTAATTATT
1 TTTTATTTATT
8250921 TTTTATGTTATAT
1 TTTTAT-TTAT-T
8250934 TTTTATTT
1 TTTTATTT
8250942 TTTGTATATT
Statistics
Matches: 37, Mismatches: 4, Indels: 5
0.80 0.09 0.11
Matches are distributed among these distances:
11 15 0.41
12 15 0.41
13 7 0.19
ACGTcount: A:0.24, C:0.00, G:0.02, T:0.75
Consensus pattern (11 bp):
TTTTATTTATT
Found at i:8250904 original size:24 final size:23
Alignment explanation
Indices: 8250872--8250951 Score: 99
Period size: 23 Copynumber: 3.5 Consensus size: 23
8250862 ACATATATAT
* *
8250872 TTTTTTATATTCGTATTTTATTTA
1 TTTTTTATATT-ATATTTTAATTA
8250896 TTTTTTATATTATATTTTAATTA
1 TTTTTTATATTATATTTTAATTA
* *
8250919 TTTTTTATGTTATATTTTTATT-
1 TTTTTTATATTATATTTTAATTA
*
8250941 TTTTGTATATT
1 TTTTTTATATT
8250952 TAAAGTAGTA
Statistics
Matches: 50, Mismatches: 6, Indels: 2
0.86 0.10 0.03
Matches are distributed among these distances:
22 9 0.18
23 30 0.60
24 11 0.22
ACGTcount: A:0.23, C:0.01, G:0.04, T:0.72
Consensus pattern (23 bp):
TTTTTTATATTATATTTTAATTA
Found at i:8250942 original size:18 final size:18
Alignment explanation
Indices: 8250885--8250952 Score: 56
Period size: 17 Copynumber: 3.9 Consensus size: 18
8250875 TTTATATTCG
8250885 TATTTTAT-TTAT-TTTT
1 TATTTTATGTTATATTTT
* *
8250901 TATATTATATTTTA-ATTAT
1 TAT-TT-TATGTTATATTTT
8250920 T-TTTTATGTTATATTTT
1 TATTTTATGTTATATTTT
*
8250937 TATTTTTTG-TATATTT
1 TATTTTATGTTATATTT
8250953 AAAGTAGTAT
Statistics
Matches: 42, Mismatches: 4, Indels: 11
0.74 0.07 0.19
Matches are distributed among these distances:
16 9 0.21
17 16 0.38
18 10 0.24
19 7 0.17
ACGTcount: A:0.24, C:0.00, G:0.03, T:0.74
Consensus pattern (18 bp):
TATTTTATGTTATATTTT
Found at i:8251175 original size:16 final size:17
Alignment explanation
Indices: 8251149--8251181 Score: 59
Period size: 16 Copynumber: 2.0 Consensus size: 17
8251139 AGTTTTATTA
8251149 AAAATAATTAAAAATAT
1 AAAATAATTAAAAATAT
8251166 AAAA-AATTAAAAATAT
1 AAAATAATTAAAAATAT
8251182 CATTAACTAT
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 12 0.75
17 4 0.25
ACGTcount: A:0.73, C:0.00, G:0.00, T:0.27
Consensus pattern (17 bp):
AAAATAATTAAAAATAT
Found at i:8251477 original size:17 final size:16
Alignment explanation
Indices: 8251444--8251477 Score: 50
Period size: 17 Copynumber: 2.1 Consensus size: 16
8251434 CATGTATATT
*
8251444 TTTATATATATGTATA
1 TTTATATATATGCATA
8251460 TTTATATGATATGCATA
1 TTTATAT-ATATGCATA
8251477 T
1 T
8251478 CATTTTCATG
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
16 7 0.44
17 9 0.56
ACGTcount: A:0.35, C:0.03, G:0.09, T:0.53
Consensus pattern (16 bp):
TTTATATATATGCATA
Found at i:8251878 original size:16 final size:16
Alignment explanation
Indices: 8251859--8251901 Score: 61
Period size: 16 Copynumber: 2.7 Consensus size: 16
8251849 ATTATTTTTA
8251859 ATAAATTTTATTAATT
1 ATAAATTTTATTAATT
8251875 AT-AATTTTATTTAATT
1 ATAAATTTTA-TTAATT
*
8251891 AAAAATTTTAT
1 ATAAATTTTAT
8251902 AAATATTAAA
Statistics
Matches: 24, Mismatches: 1, Indels: 4
0.83 0.03 0.14
Matches are distributed among these distances:
15 7 0.29
16 10 0.42
17 7 0.29
ACGTcount: A:0.44, C:0.00, G:0.00, T:0.56
Consensus pattern (16 bp):
ATAAATTTTATTAATT
Found at i:8251899 original size:17 final size:17
Alignment explanation
Indices: 8251856--8251901 Score: 60
Period size: 17 Copynumber: 2.8 Consensus size: 17
8251846 TATATTATTT
8251856 TTAATAAATTTTA-TTAA
1 TTAA-AAATTTTATTTAA
*
8251873 TT-ATAATTTTATTTAA
1 TTAAAAATTTTATTTAA
8251889 TTAAAAATTTTAT
1 TTAAAAATTTTAT
8251902 AAATATTAAA
Statistics
Matches: 25, Mismatches: 2, Indels: 4
0.81 0.06 0.13
Matches are distributed among these distances:
15 7 0.28
16 7 0.28
17 11 0.44
ACGTcount: A:0.43, C:0.00, G:0.00, T:0.57
Consensus pattern (17 bp):
TTAAAAATTTTATTTAA
Found at i:8252659 original size:35 final size:34
Alignment explanation
Indices: 8252620--8252695 Score: 91
Period size: 35 Copynumber: 2.2 Consensus size: 34
8252610 TGTTATATAA
* *
8252620 AAATTTAATTAAAT-AAATATATTTAAATTTAAATT
1 AAATTTAA--AAATAAAATATAATTAAATTAAAATT
*
8252655 AAATTTTAAAAATAAAATTTAATTAAATTAAAATT
1 AAA-TTTAAAAATAAAATATAATTAAATTAAAATT
8252690 AAATTT
1 AAATTT
8252696 TTTATAATTT
Statistics
Matches: 36, Mismatches: 3, Indels: 5
0.82 0.07 0.11
Matches are distributed among these distances:
34 7 0.19
35 24 0.67
36 5 0.14
ACGTcount: A:0.57, C:0.00, G:0.00, T:0.43
Consensus pattern (34 bp):
AAATTTAAAAATAAAATATAATTAAATTAAAATT
Found at i:8252704 original size:21 final size:21
Alignment explanation
Indices: 8252619--8252695 Score: 66
Period size: 24 Copynumber: 3.3 Consensus size: 21
8252609 TTGTTATATA
8252619 AAAATTTAATTAAA-TAAATAT
1 AAAATTTAATTAAATTAAA-AT
8252640 ATTTAAATTTAAATTAAATTTTAAAAAT
1 A---AAATTT-AATTAAA--TTAAA-AT
8252668 AAAATTTAATTAAATTAAAAT
1 AAAATTTAATTAAATTAAAAT
*
8252689 TAAATTT
1 AAAATTT
8252696 TTTATAATTT
Statistics
Matches: 47, Mismatches: 2, Indels: 14
0.75 0.03 0.22
Matches are distributed among these distances:
21 9 0.19
22 5 0.11
24 13 0.28
25 13 0.28
28 7 0.15
ACGTcount: A:0.57, C:0.00, G:0.00, T:0.43
Consensus pattern (21 bp):
AAAATTTAATTAAATTAAAAT
Found at i:8268683 original size:2 final size:2
Alignment explanation
Indices: 8268676--8268715 Score: 80
Period size: 2 Copynumber: 20.0 Consensus size: 2
8268666 GTTGTGGCTG
8268676 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
8268716 TGAGAGAGAG
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 38 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:8268722 original size:2 final size:2
Alignment explanation
Indices: 8268717--8268757 Score: 82
Period size: 2 Copynumber: 20.5 Consensus size: 2
8268707 TATATATATT
8268717 GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA G
1 GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA G
8268758 GGGTTTAGGA
Statistics
Matches: 39, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 39 1.00
ACGTcount: A:0.49, C:0.00, G:0.51, T:0.00
Consensus pattern (2 bp):
GA
Found at i:8269119 original size:20 final size:20
Alignment explanation
Indices: 8269094--8269133 Score: 80
Period size: 20 Copynumber: 2.0 Consensus size: 20
8269084 TTCAAATCTG
8269094 GTTCATTATTGTTGAGTTGA
1 GTTCATTATTGTTGAGTTGA
8269114 GTTCATTATTGTTGAGTTGA
1 GTTCATTATTGTTGAGTTGA
8269134 ATTTAAGTAA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.20, C:0.05, G:0.25, T:0.50
Consensus pattern (20 bp):
GTTCATTATTGTTGAGTTGA
Found at i:8269378 original size:20 final size:20
Alignment explanation
Indices: 8269353--8269401 Score: 62
Period size: 20 Copynumber: 2.5 Consensus size: 20
8269343 AAATTTAAAT
*
8269353 AATTTAATTTTTAAAAATCA
1 AATTTAATTTTAAAAAATCA
* *
8269373 AATTTAAATTTAAAAAATTA
1 AATTTAATTTTAAAAAATCA
*
8269393 AATTAAATT
1 AATTTAATT
8269402 CAGCTCAAAT
Statistics
Matches: 24, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
20 24 1.00
ACGTcount: A:0.55, C:0.02, G:0.00, T:0.43
Consensus pattern (20 bp):
AATTTAATTTTAAAAAATCA
Found at i:8274718 original size:22 final size:22
Alignment explanation
Indices: 8274693--8274740 Score: 69
Period size: 22 Copynumber: 2.2 Consensus size: 22
8274683 AATATTAAAA
* *
8274693 ATTTATTTATATAATAATATTT
1 ATTTATTTATATAATAAAAATT
*
8274715 ATTTATTTTTATAATAAAAATT
1 ATTTATTTATATAATAAAAATT
8274737 ATTT
1 ATTT
8274741 TTTGAACAAA
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
22 23 1.00
ACGTcount: A:0.42, C:0.00, G:0.00, T:0.58
Consensus pattern (22 bp):
ATTTATTTATATAATAAAAATT
Found at i:8275853 original size:33 final size:31
Alignment explanation
Indices: 8275803--8275890 Score: 97
Period size: 33 Copynumber: 2.7 Consensus size: 31
8275793 CTTTAATTAA
*
8275803 TATTTAAAATAATAATATTAATATAATATTTAT
1 TATTT-AAATAATAATATTAATAAAATATTT-T
*
8275836 TATTTAAATAATAAATATTTATAAAATATTTT
1 TATTTAAATAAT-AATATTAATAAAATATTTT
* *
8275868 TATTTTAAT-ATAATTTTTAATAA
1 TATTTAAATAATAA-TATTAATAA
8275891 TGTAAATATT
Statistics
Matches: 48, Mismatches: 5, Indels: 6
0.81 0.08 0.10
Matches are distributed among these distances:
30 2 0.04
31 9 0.19
32 16 0.33
33 21 0.44
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (31 bp):
TATTTAAATAATAATATTAATAAAATATTTT
Found at i:8275871 original size:17 final size:17
Alignment explanation
Indices: 8275854--8275909 Score: 51
Period size: 18 Copynumber: 3.2 Consensus size: 17
8275844 TAATAAATAT
8275854 TTATAAAATATTTTT-A
1 TTATAAAATATTTTTAA
* *
8275870 TTTTAATATAATTTTTAA
1 TTATAAAAT-ATTTTTAA
* *
8275888 TAATGTAAATATTTTTAA
1 TTAT-AAAATATTTTTAA
8275906 TTAT
1 TTAT
8275910 TTTTTAATAT
Statistics
Matches: 30, Mismatches: 7, Indels: 4
0.73 0.17 0.10
Matches are distributed among these distances:
16 7 0.23
17 6 0.20
18 14 0.47
19 3 0.10
ACGTcount: A:0.41, C:0.00, G:0.02, T:0.57
Consensus pattern (17 bp):
TTATAAAATATTTTTAA
Found at i:8276605 original size:15 final size:15
Alignment explanation
Indices: 8276587--8276636 Score: 52
Period size: 15 Copynumber: 3.4 Consensus size: 15
8276577 ATAATTAACC
8276587 AAATTAAAATTTTAA
1 AAATTAAAATTTTAA
*
8276602 AAATTATAAA--ATAA
1 AAATTA-AAATTTTAA
8276616 AAA-TAAAATTTATAA
1 AAATTAAAATTT-TAA
8276631 AAATTA
1 AAATTA
8276637 TAGTAAAAAA
Statistics
Matches: 28, Mismatches: 2, Indels: 9
0.72 0.05 0.23
Matches are distributed among these distances:
12 3 0.11
13 2 0.07
14 6 0.21
15 12 0.43
16 5 0.18
ACGTcount: A:0.66, C:0.00, G:0.00, T:0.34
Consensus pattern (15 bp):
AAATTAAAATTTTAA
Found at i:8276654 original size:25 final size:26
Alignment explanation
Indices: 8276591--8276668 Score: 79
Period size: 25 Copynumber: 3.0 Consensus size: 26
8276581 TTAACCAAAT
*
8276591 TAAAATTT-TAAAAATTATAAAATAAAAA
1 TAAAATTTATAAAAATTAT--AGT-AAAA
8276619 TAAAATTTATAAAAATTATAGTAAAA
1 TAAAATTTATAAAAATTATAGTAAAA
** *
8276645 -AAAATTTATATTAATAATAGTAAA
1 TAAAATTTATAAAAATTATAGTAAA
8276669 GAAATTGACA
Statistics
Matches: 45, Mismatches: 4, Indels: 5
0.83 0.07 0.09
Matches are distributed among these distances:
25 21 0.47
26 4 0.09
27 2 0.04
28 8 0.18
29 10 0.22
ACGTcount: A:0.63, C:0.00, G:0.03, T:0.35
Consensus pattern (26 bp):
TAAAATTTATAAAAATTATAGTAAAA
Found at i:8277009 original size:24 final size:22
Alignment explanation
Indices: 8276969--8277017 Score: 64
Period size: 23 Copynumber: 2.1 Consensus size: 22
8276959 TTTCATAATC
8276969 TCTTCGTTTTTTTGGTTCTT-TT
1 TCTTCGTTTTTTTGGTT-TTCTT
8276991 TCTTCGATTTTTTTGGGTTTTCTT
1 TCTTCG-TTTTTTT-GGTTTTCTT
8277015 TCT
1 TCT
8277018 GCATTTAAAT
Statistics
Matches: 24, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
22 6 0.25
23 9 0.38
24 9 0.38
ACGTcount: A:0.02, C:0.14, G:0.14, T:0.69
Consensus pattern (22 bp):
TCTTCGTTTTTTTGGTTTTCTT
Found at i:8277023 original size:23 final size:23
Alignment explanation
Indices: 8276975--8277023 Score: 57
Period size: 23 Copynumber: 2.1 Consensus size: 23
8276965 AATCTCTTCG
*
8276975 TTTTTTTGGTTCTTTTTCTTCGA
1 TTTTTTTGGTTCTTTTTCTGCGA
8276998 TTTTTTTGGGTT-TTCTTTCTGC-A
1 TTTTTTT-GGTTCTT-TTTCTGCGA
8277021 TTT
1 TTT
8277024 AAATTTGACA
Statistics
Matches: 23, Mismatches: 1, Indels: 4
0.82 0.04 0.14
Matches are distributed among these distances:
23 13 0.57
24 10 0.43
ACGTcount: A:0.04, C:0.12, G:0.14, T:0.69
Consensus pattern (23 bp):
TTTTTTTGGTTCTTTTTCTGCGA
Found at i:8277567 original size:2 final size:2
Alignment explanation
Indices: 8277554--8277594 Score: 73
Period size: 2 Copynumber: 20.5 Consensus size: 2
8277544 GGCTTCTTTT
*
8277554 TG TG TA TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG T
1 TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG T
8277595 TTGTTGCATC
Statistics
Matches: 37, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
2 37 1.00
ACGTcount: A:0.02, C:0.00, G:0.46, T:0.51
Consensus pattern (2 bp):
TG
Found at i:8302014 original size:1 final size:1
Alignment explanation
Indices: 8302010--8302046 Score: 56
Period size: 1 Copynumber: 37.0 Consensus size: 1
8302000 CTTTTTTTTT
**
8302010 GGGGGGGGGGGGGGTTGGGGGGGGGGGGGGGGGGGGG
1 GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG
8302047 ACCCTTTAAT
Statistics
Matches: 34, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
1 34 1.00
ACGTcount: A:0.00, C:0.00, G:0.95, T:0.05
Consensus pattern (1 bp):
G
Found at i:8302029 original size:16 final size:16
Alignment explanation
Indices: 8302008--8302039 Score: 64
Period size: 16 Copynumber: 2.0 Consensus size: 16
8301998 TTCTTTTTTT
8302008 TTGGGGGGGGGGGGGG
1 TTGGGGGGGGGGGGGG
8302024 TTGGGGGGGGGGGGGG
1 TTGGGGGGGGGGGGGG
8302040 GGGGGGGACC
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.00, C:0.00, G:0.88, T:0.12
Consensus pattern (16 bp):
TTGGGGGGGGGGGGGG
Found at i:8310742 original size:2 final size:2
Alignment explanation
Indices: 8310735--8310766 Score: 55
Period size: 2 Copynumber: 16.0 Consensus size: 2
8310725 CGACCGAAAC
*
8310735 AT AT AT AT AT AT AT AT AT AT AC AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
8310767 TAATACTCGG
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
2 28 1.00
ACGTcount: A:0.50, C:0.03, G:0.00, T:0.47
Consensus pattern (2 bp):
AT
Found at i:8311113 original size:18 final size:19
Alignment explanation
Indices: 8311078--8311117 Score: 64
Period size: 19 Copynumber: 2.2 Consensus size: 19
8311068 TTAAAACATA
*
8311078 ATAAAAAATATTACATAAT
1 ATAAAAAATAATACATAAT
8311097 ATAAAAAATAATA-ATAAT
1 ATAAAAAATAATACATAAT
8311115 ATA
1 ATA
8311118 TAAATGTATT
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
18 8 0.40
19 12 0.60
ACGTcount: A:0.68, C:0.03, G:0.00, T:0.30
Consensus pattern (19 bp):
ATAAAAAATAATACATAAT
Found at i:8311846 original size:30 final size:28
Alignment explanation
Indices: 8311787--8311862 Score: 82
Period size: 29 Copynumber: 2.6 Consensus size: 28
8311777 TTTATTTTTA
*
8311787 AAATAAATTTTTATATTTTTATCATATCC
1 AAATAAA-TTTTATATTTTGATCATATCC
* *
8311816 AAATAGATTATTATATTTTGATTTATATCC
1 AAATAAATT-TTATATTTTGA-TCATATCC
*
8311846 ACATAAATTTT-TATTTT
1 AAATAAATTTTATATTTT
8311863 AAATAAAAAT
Statistics
Matches: 40, Mismatches: 5, Indels: 5
0.80 0.10 0.10
Matches are distributed among these distances:
28 8 0.20
29 18 0.45
30 14 0.35
ACGTcount: A:0.37, C:0.08, G:0.03, T:0.53
Consensus pattern (28 bp):
AAATAAATTTTATATTTTGATCATATCC
Found at i:8313375 original size:21 final size:20
Alignment explanation
Indices: 8313345--8313390 Score: 56
Period size: 20 Copynumber: 2.2 Consensus size: 20
8313335 AAAATATTTT
*
8313345 ATTAATAAATAATTATTTAAA
1 ATTAAAAAAT-ATTATTTAAA
* *
8313366 TTTAAAAAATGTTATTTAAA
1 ATTAAAAAATATTATTTAAA
8313386 ATTAA
1 ATTAA
8313391 TTCAATAAAT
Statistics
Matches: 21, Mismatches: 4, Indels: 1
0.81 0.15 0.04
Matches are distributed among these distances:
20 13 0.62
21 8 0.38
ACGTcount: A:0.54, C:0.00, G:0.02, T:0.43
Consensus pattern (20 bp):
ATTAAAAAATATTATTTAAA
Found at i:8318597 original size:17 final size:17
Alignment explanation
Indices: 8318575--8318607 Score: 66
Period size: 17 Copynumber: 1.9 Consensus size: 17
8318565 TTGACCGAAA
8318575 TGTTTTACTGCATTTCC
1 TGTTTTACTGCATTTCC
8318592 TGTTTTACTGCATTTC
1 TGTTTTACTGCATTTC
8318608 ATTGAACTCT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.12, C:0.21, G:0.12, T:0.55
Consensus pattern (17 bp):
TGTTTTACTGCATTTCC
Found at i:8320331 original size:21 final size:22
Alignment explanation
Indices: 8320297--8320349 Score: 76
Period size: 21 Copynumber: 2.5 Consensus size: 22
8320287 CATATATAAA
*
8320297 AATA-TTAAAAATTTTAT-ATT
1 AATATTTAAATATTTTATAATT
8320317 AATATTTAAATATTTTATAATT
1 AATATTTAAATATTTTATAATT
8320339 AA-ATTTAAATA
1 AATATTTAAATA
8320350 AAAATATACC
Statistics
Matches: 30, Mismatches: 1, Indels: 3
0.88 0.03 0.09
Matches are distributed among these distances:
20 4 0.13
21 21 0.70
22 5 0.17
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (22 bp):
AATATTTAAATATTTTATAATT
Found at i:8326192 original size:2 final size:2
Alignment explanation
Indices: 8326185--8326212 Score: 56
Period size: 2 Copynumber: 14.0 Consensus size: 2
8326175 AAGTGCACTG
8326185 AC AC AC AC AC AC AC AC AC AC AC AC AC AC
1 AC AC AC AC AC AC AC AC AC AC AC AC AC AC
8326213 GTGTATCTGC
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.50, C:0.50, G:0.00, T:0.00
Consensus pattern (2 bp):
AC
Found at i:8326458 original size:17 final size:17
Alignment explanation
Indices: 8326436--8326471 Score: 54
Period size: 17 Copynumber: 2.1 Consensus size: 17
8326426 AAAAAATTAA
8326436 ATATATTGATATTGAAT
1 ATATATTGATATTGAAT
* *
8326453 ATATATTTATATTTAAT
1 ATATATTGATATTGAAT
8326470 AT
1 AT
8326472 TTACATTCAA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.42, C:0.00, G:0.06, T:0.53
Consensus pattern (17 bp):
ATATATTGATATTGAAT
Found at i:8334799 original size:15 final size:15
Alignment explanation
Indices: 8334723--8334806 Score: 61
Period size: 15 Copynumber: 5.7 Consensus size: 15
8334713 ATAATAAAAC
8334723 TTAATA-TTATAAT-
1 TTAATATTTATAATA
* *
8334736 TT-TTATTTAATAATT
1 TTAATATTT-ATAATA
* *
8334751 TTAATATTTTTATTA
1 TTAATATTTATAATA
*
8334766 TTAATATTTATTATAA
1 TTAATATTTATAAT-A
8334782 TTAAT-TTTAATAATA
1 TTAATATTT-ATAATA
8334797 TT-ATATTTAT
1 TTAATATTTAT
8334807 GATCGTAATA
Statistics
Matches: 55, Mismatches: 9, Indels: 13
0.71 0.12 0.17
Matches are distributed among these distances:
12 2 0.04
13 4 0.07
14 9 0.16
15 25 0.45
16 15 0.27
ACGTcount: A:0.39, C:0.00, G:0.00, T:0.61
Consensus pattern (15 bp):
TTAATATTTATAATA
Found at i:8335712 original size:15 final size:15
Alignment explanation
Indices: 8335694--8335736 Score: 50
Period size: 15 Copynumber: 2.9 Consensus size: 15
8335684 TGGGCTTGGC
8335694 GGTGGAGGTGGTGCA
1 GGTGGAGGTGGTGCA
** *
8335709 GGTGGAGGTTTTGGA
1 GGTGGAGGTGGTGCA
*
8335724 GGTGGAGCTGGTG
1 GGTGGAGGTGGTG
8335737 GTGGTGCTGG
Statistics
Matches: 22, Mismatches: 6, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
15 22 1.00
ACGTcount: A:0.12, C:0.05, G:0.58, T:0.26
Consensus pattern (15 bp):
GGTGGAGGTGGTGCA
Found at i:8335728 original size:30 final size:30
Alignment explanation
Indices: 8335661--8335736 Score: 80
Period size: 30 Copynumber: 2.5 Consensus size: 30
8335651 TGGTGAGATA
* * * *
8335661 GGAGTTGGAGGTGGAGCGGGTGGTGGGCTT
1 GGAGGTGGAGGTGGTGCAGGTGGAGGGCTT
* **
8335691 GGCGGTGGAGGTGGTGCAGGTGGAGGTTTT
1 GGAGGTGGAGGTGGTGCAGGTGGAGGGCTT
*
8335721 GGAGGTGGAGCTGGTG
1 GGAGGTGGAGGTGGTG
8335737 GTGGTGCTGG
Statistics
Matches: 37, Mismatches: 9, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
30 37 1.00
ACGTcount: A:0.11, C:0.07, G:0.59, T:0.24
Consensus pattern (30 bp):
GGAGGTGGAGGTGGTGCAGGTGGAGGGCTT
Found at i:8335747 original size:24 final size:24
Alignment explanation
Indices: 8335696--8335765 Score: 68
Period size: 24 Copynumber: 2.9 Consensus size: 24
8335686 GGCTTGGCGG
* **
8335696 TGGAGGTGGTGCAGGTGGAGGTTT
1 TGGAGGTGGAGCAGGTGGAGGTGC
* *
8335720 TGGAGGTGGAGCTGGTGGTGGTGC
1 TGGAGGTGGAGCAGGTGGAGGTGC
* **
8335744 TGGAGGAGGAAAAGGTGGAGGT
1 TGGAGGTGGAGCAGGTGGAGGT
8335766 ATAGGTGGCG
Statistics
Matches: 36, Mismatches: 10, Indels: 0
0.78 0.22 0.00
Matches are distributed among these distances:
24 36 1.00
ACGTcount: A:0.17, C:0.04, G:0.56, T:0.23
Consensus pattern (24 bp):
TGGAGGTGGAGCAGGTGGAGGTGC
Found at i:8335760 original size:48 final size:48
Alignment explanation
Indices: 8335708--8335872 Score: 144
Period size: 48 Copynumber: 3.6 Consensus size: 48
8335698 GAGGTGGTGC
* * *
8335708 AGGTGGAGGTTTTGGAGGTGGAGCTGGTGGTGGTGCTGGAGGAGGAAA
1 AGGTGGAGGTATAGGAGGAGGAGCTGGTGGTGGTGCTGGAGGAGGAAA
* * * *** * *
8335756 AGGTGGAGGTATAGGTGGCGGAGGTGGACTTGGTGGTGGAGGTGGAAA
1 AGGTGGAGGTATAGGAGGAGGAGCTGGTGGTGGTGCTGGAGGAGGAAA
* *
8335804 AGGTGGAGGTATAGGAGGAGGA-AT--TGGT-G-G-TGGAGGTGGAAA
1 AGGTGGAGGTATAGGAGGAGGAGCTGGTGGTGGTGCTGGAGGAGGAAA
* * *
8335846 AGGTGGAGGCATAGGAGGTGGTGCTGG
1 AGGTGGAGGTATAGGAGGAGGAGCTGG
8335873 AGGAGGAATT
Statistics
Matches: 94, Mismatches: 20, Indels: 9
0.76 0.16 0.07
Matches are distributed among these distances:
42 31 0.33
43 2 0.02
44 1 0.01
45 1 0.01
47 1 0.01
48 58 0.62
ACGTcount: A:0.22, C:0.04, G:0.54, T:0.21
Consensus pattern (48 bp):
AGGTGGAGGTATAGGAGGAGGAGCTGGTGGTGGTGCTGGAGGAGGAAA
Found at i:8335808 original size:18 final size:18
Alignment explanation
Indices: 8335769--8336645 Score: 204
Period size: 18 Copynumber: 46.9 Consensus size: 18
8335759 TGGAGGTATA
* *
8335769 GGTGGCGGAGGTGGACTT
1 GGTGGTGGAGGTGGAATT
*
8335787 GGTGGTGGAGGTGGAAAAGGT
1 GGTGGTGGAGGTGG--AA-TT
* *
8335808 GGAGGTATAGGAGGAGGAATT
1 GGTGG--T-GGAGGTGGAATT
**
8335829 GGTGGTGGAGGTGGAAAA
1 GGTGGTGGAGGTGGAATT
* **
8335847 GGTGGAGGCA--TAGGAGGT
1 GGTGGTGG-AGGT-GGAATT
* *
8335865 GGTGCTGGAGGAGGAATT
1 GGTGGTGGAGGTGGAATT
8335883 GGTGGTGGAGGTGGAATT
1 GGTGGTGGAGGTGGAATT
* *
8335901 GGTGGTGGTGGTGGAAAAGGT
1 GGTGGTGGAGGTGG--AA-TT
* *
8335922 GGAGGTATAGGAGGTGGATTT
1 GGTGG--T-GGAGGTGGAATT
**
8335943 GGTGGTGGAGGCATAGGAGGT
1 GGTGGTGGAGG--T-GGAATT
* *
8335964 GGTGCTGGAGGAGGAATT
1 GGTGGTGGAGGTGGAATT
* *
8335982 GGTGGTGGAGGCGGAAAAGGT
1 GGTGGTGGAGGTGG--AA-TT
*
8336003 GGAGGTATAGGAGGTGGAATT
1 GGTGG--T-GGAGGTGGAATT
**
8336024 GGTGGTGGAGGTGGAAAA
1 GGTGGTGGAGGTGGAATT
* **
8336042 GGTGGAGGCA--TAGGAGGT
1 GGTGGTGG-AGGT-GGAATT
* * *
8336060 GGTGCTGGAGGAGGAGTT
1 GGTGGTGGAGGTGGAATT
8336078 GGTGGTGGAGGTGGAA--
1 GGTGGTGGAGGTGGAATT
** *
8336094 -AAGGTGGAGGT---ATA
1 GGTGGTGGAGGTGGAATT
* * **
8336108 GGAGGTGGAGCTGGAGGT
1 GGTGGTGGAGGTGGAATT
* *
8336126 GGTGCTGGAGGAGGAATT
1 GGTGGTGGAGGTGGAATT
* *
8336144 GGTGGTGGAGGCGGAAAAGGT
1 GGTGGTGGAGGTGG--AA-TT
*
8336165 GGAGGTATAGGAGGTGGAATT
1 GGTGG--T-GGAGGTGGAATT
**
8336186 GGTGGTGGAGGTGGAAAA
1 GGTGGTGGAGGTGGAATT
* **
8336204 GGTGGAGGCA--TAGGAGGT
1 GGTGGTGG-AGGT-GGAATT
* * *
8336222 GGTGCTGGAGGAGGAGTT
1 GGTGGTGGAGGTGGAATT
8336240 GGTGGTGGAGGTGGAA--
1 GGTGGTGGAGGTGGAATT
** *
8336256 -AAGGTGGAGGT---ATA
1 GGTGGTGGAGGTGGAATT
* * **
8336270 GGAGGTGGAGCTGGAGGT
1 GGTGGTGGAGGTGGAATT
* *
8336288 GGTGCTGGAGGAGGAATT
1 GGTGGTGGAGGTGGAATT
*
8336306 GGTGGTGGAGGTGGAAAAGGT
1 GGTGGTGGAGGTGG--AA-TT
*
8336327 GGAGGTATAGGAGGTGGAATT
1 GGTGG--T-GGAGGTGGAATT
*
8336348 GGTGGTGGAGGTGGAAAAGGT
1 GGTGGTGGAGGTGG--AA-TT
*
8336369 GGAGGTATAGGAGGTGGAATT
1 GGTGG--T-GGAGGTGGAATT
**
8336390 GGTGGTGGAGGCATAGGAGGT
1 GGTGGTGGAGG--T-GGAATT
* * *
8336411 GGTGCTGGAGGAGGAGTT
1 GGTGGTGGAGGTGGAATT
8336429 GGTGGTGGAGGTGGAA--
1 GGTGGTGGAGGTGGAATT
** *
8336445 -AAGGTGGAGGT---ATA
1 GGTGGTGGAGGTGGAATT
* * **
8336459 GGAGGTGGAGCTGGAGGT
1 GGTGGTGGAGGTGGAATT
* *
8336477 GGTGCTGGAGGAGGAATT
1 GGTGGTGGAGGTGGAATT
*
8336495 GGTGGTGGAGGTGGAAAAGGT
1 GGTGGTGGAGGTGG--AA-TT
*
8336516 GGAGGTATAGGAGGTGGAATT
1 GGTGG--T-GGAGGTGGAATT
**
8336537 GGTGGTGGAGGCATAGGAGGT
1 GGTGGTGGAGG--T-GGAATT
* * *
8336558 GGTGCTGGAGGAGGAGTT
1 GGTGGTGGAGGTGGAATT
**
8336576 GGTGGTGGAGGTGGAAAA
1 GGTGGTGGAGGTGGAATT
* **
8336594 GGTGGAGGCA--TAGGAGGT
1 GGTGGTGG-AGGT-GGAATT
* * *
8336612 GGTGTTGGAGGAGGAGTT
1 GGTGGTGGAGGTGGAATT
8336630 GGTGGTGGAGGTGGAA
1 GGTGGTGGAGGTGGAA
8336646 AAGGTGGAGG
Statistics
Matches: 616, Mismatches: 158, Indels: 170
0.65 0.17 0.18
Matches are distributed among these distances:
12 3 0.00
15 54 0.09
17 8 0.01
18 340 0.55
19 11 0.02
20 16 0.03
21 112 0.18
22 13 0.02
23 7 0.01
24 52 0.08
ACGTcount: A:0.23, C:0.03, G:0.54, T:0.20
Consensus pattern (18 bp):
GGTGGTGGAGGTGGAATT
Found at i:8335821 original size:42 final size:42
Alignment explanation
Indices: 8335738--8336467 Score: 510
Period size: 42 Copynumber: 18.0 Consensus size: 42
8335728 GAGCTGGTGG
* * *
8335738 TGGTGCTGGAGGAGGAAAAGGTGGAGGTATAGGTGGCGGAGGTGGACT
1 TGGTGGTGGAGGTGGAAAAGGTGGAGGTATA------GGAGGTGGAAT
*
8335786 TGGTGGTGGAGGTGGAAAAGGTGGAGGTATAGGAGGAGGAAT
1 TGGTGGTGGAGGTGGAAAAGGTGGAGGTATAGGAGGTGGAAT
*
8335828 TGGTGGTGGAGGTGGAAAAGGTGGAGGCATAGGA---GG---
1 TGGTGGTGGAGGTGGAAAAGGTGGAGGTATAGGAGGTGGAAT
* * * *
8335864 TGGTGCTGGAGGAGG--AA-TTGGTGG--T-GGAGGTGGAAT
1 TGGTGGTGGAGGTGGAAAAGGTGGAGGTATAGGAGGTGGAAT
* *
8335900 TGGTGGTGGTGGTGGAAAAGGTGGAGGTATAGGAGGTGGATT
1 TGGTGGTGGAGGTGGAAAAGGTGGAGGTATAGGAGGTGGAAT
* * * * * *
8335942 TGGTGGTGGA---GGCATAGGAGGTGGTGCT-GGAGGAGGAAT
1 TGGTGGTGGAGGTGGAAAAGGTGGAGGT-ATAGGAGGTGGAAT
*
8335981 TGGTGGTGGAGGCGGAAAAGGTGGAGGTATAGGAGGTGGAAT
1 TGGTGGTGGAGGTGGAAAAGGTGGAGGTATAGGAGGTGGAAT
* ***
8336023 TGGTGGTGGAGGTGGAAAAGGTGGAGGCATAGGAGGTGGTGC
1 TGGTGGTGGAGGTGGAAAAGGTGGAGGTATAGGAGGTGGAAT
* * * * * * * *
8336065 TGGAGGAGGAGTTGG---TGGTGGAGGTGGAAAAGGTGGAGGTAT
1 TGGTGGTGGAGGTGGAAAAGGTGGAGGT---ATAGGAGGTGGAAT
* * * * * *
8336107 AGGAGGTGGAGCTGG---AGGTGG-TG-CT-GGAGGAGGAAT
1 TGGTGGTGGAGGTGGAAAAGGTGGAGGTATAGGAGGTGGAAT
*
8336143 TGGTGGTGGAGGCGGAAAAGGTGGAGGTATAGGAGGTGGAAT
1 TGGTGGTGGAGGTGGAAAAGGTGGAGGTATAGGAGGTGGAAT
* ***
8336185 TGGTGGTGGAGGTGGAAAAGGTGGAGGCATAGGAGGTGGTGC
1 TGGTGGTGGAGGTGGAAAAGGTGGAGGTATAGGAGGTGGAAT
* * * * * * * *
8336227 TGGAGGAGGAGTTGG---TGGTGGAGGTGGAAAAGGTGGAGGTAT
1 TGGTGGTGGAGGTGGAAAAGGTGGAGGT---ATAGGAGGTGGAAT
* * * * * *
8336269 AGGAGGTGGAGCTGG---AGGTGG-TG-CT-GGAGGAGGAAT
1 TGGTGGTGGAGGTGGAAAAGGTGGAGGTATAGGAGGTGGAAT
8336305 TGGTGGTGGAGGTGGAAAAGGTGGAGGTATAGGAGGTGGAAT
1 TGGTGGTGGAGGTGGAAAAGGTGGAGGTATAGGAGGTGGAAT
8336347 TGGTGGTGGAGGTGGAAAAGGTGGAGGTATAGGAGGTGGAAT
1 TGGTGGTGGAGGTGGAAAAGGTGGAGGTATAGGAGGTGGAAT
* * * * * * *
8336389 TGGTGGTGGA---GGCATAGGAGGTGGTGCT-GGAGGAGGAGT
1 TGGTGGTGGAGGTGGAAAAGGTGGAGGT-ATAGGAGGTGGAAT
8336428 TGGTGGTGGAGGTGGAAAAGGTGGAGGTATAGGAGGTGGA
1 TGGTGGTGGAGGTGGAAAAGGTGGAGGTATAGGAGGTGGA
8336468 GCTGGAGGTG
Statistics
Matches: 539, Mismatches: 103, Indels: 86
0.74 0.14 0.12
Matches are distributed among these distances:
30 3 0.01
31 1 0.00
33 7 0.01
34 2 0.00
36 66 0.12
38 2 0.00
39 95 0.18
40 4 0.01
41 7 0.01
42 323 0.60
48 29 0.05
ACGTcount: A:0.23, C:0.03, G:0.54, T:0.20
Consensus pattern (42 bp):
TGGTGGTGGAGGTGGAAAAGGTGGAGGTATAGGAGGTGGAAT
Found at i:8336030 original size:162 final size:159
Alignment explanation
Indices: 8335958--8336385 Score: 784
Period size: 162 Copynumber: 2.7 Consensus size: 159
8335948 TGGAGGCATA
8335958 GGAGGTGGTGCTGGAGGAGGAATTGGTGGTGGAGGCGGAAAAGGTGGAGGTATAGGAGGTGGAAT
1 GGAGGTGGTGCTGGAGGAGGAATTGGTGGTGGAGGCGGAAAAGGTGGAGGTATAGGAGGTGGAAT
8336023 TGGTGGTGGAGGTGGAAAAGGTGGAGGCATAGGAGGTGGTGCTGGAGGAGGAGTTGGTGGTGGAG
66 TGGTGGTGGAGGTGGAAAAGGTGGAGGCATAGGAGGTGGTGCTGGAGGAGGA--TGGTGGTGGAG
8336088 GTGGAAAAGGTGGAGGTATAGGAGGTGGAGCT
129 GTGGAAAAGGTGGA-GTATAGGAGGTGGAGCT
8336120 GGAGGTGGTGCTGGAGGAGGAATTGGTGGTGGAGGCGGAAAAGGTGGAGGTATAGGAGGTGGAAT
1 GGAGGTGGTGCTGGAGGAGGAATTGGTGGTGGAGGCGGAAAAGGTGGAGGTATAGGAGGTGGAAT
8336185 TGGTGGTGGAGGTGGAAAAGGTGGAGGCATAGGAGGTGGTGCTGGAGGAGGAGTTGGTGGTGGAG
66 TGGTGGTGGAGGTGGAAAAGGTGGAGGCATAGGAGGTGGTGCTGGAGGAGGA--TGGTGGTGGAG
8336250 GTGGAAAAGGTGGAGGTATAGGAGGTGGAGCT
129 GTGGAAAAGGTGGA-GTATAGGAGGTGGAGCT
*
8336282 GGAGGTGGTGCTGGAGGAGGAATTGGTGGTGGAGGTGGAAAAGGTGGAGGTATAGGAGGTGGAAT
1 GGAGGTGGTGCTGGAGGAGGAATTGGTGGTGGAGGCGGAAAAGGTGGAGGTATAGGAGGTGGAAT
*
8336347 TGGTGGTGGAGGTGGAAAAGGTGGAGGTATAGGAGGTGG
66 TGGTGGTGGAGGTGGAAAAGGTGGAGGCATAGGAGGTGG
8336386 AATTGGTGGT
Statistics
Matches: 264, Mismatches: 2, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
162 264 1.00
ACGTcount: A:0.24, C:0.03, G:0.54, T:0.19
Consensus pattern (159 bp):
GGAGGTGGTGCTGGAGGAGGAATTGGTGGTGGAGGCGGAAAAGGTGGAGGTATAGGAGGTGGAAT
TGGTGGTGGAGGTGGAAAAGGTGGAGGCATAGGAGGTGGTGCTGGAGGAGGATGGTGGTGGAGGT
GGAAAAGGTGGAGTATAGGAGGTGGAGCT
Found at i:8336058 original size:66 final size:63
Alignment explanation
Indices: 8335985--8336547 Score: 275
Period size: 66 Copynumber: 8.8 Consensus size: 63
8335975 AGGAATTGGT
*
8335985 GGTGGAGGCGGAAAAGGTGGAGGTATAGGAGGTGGAATTGGTGGTGGAGGTGGAAAAGGTGGA
1 GGTGGAGGTGGAAAAGGTGGAGGTATAGGAGGTGGAATTGGTGGTGGAGGTGGAAAAGGTGGA
* * * * *
8336048 -G-GCA--TAGG---AGGTGG-TG-CT-GGAGGAGGAGTTGGTGGTGGAGGTGGAAAAGGTGGA
1 GGTGGAGGT-GGAAAAGGTGGAGGTATAGGAGGTGGAATTGGTGGTGGAGGTGGAAAAGGTGGA
*** * * * * *
8336102 GGTATAGGAGGTGGAGCTGGAGGTGGTGCT-GGAGGAGGAATTGGTGGTGGAGGCGGAAAAGGTG
1 GG--T-GGAGGTGGAAAAGGTGGAGGT-ATAGGAGGTGGAATTGGTGGTGGAGGTGGAAAAGGTG
8336166 GA
62 GA
** * * * * * * * *
8336168 GGTATAGGAGGTGGAATTGGTGGTGGAGGTGGAAAAGGTGGAGGCATAGGAGGTGGTGCTGGAGG
1 GG--T-GGAGGTGGAA---AAGGTGGAGGT---ATAGGAGGTGGAATTGGTGGTGGAGGTGGA--
* * *
8336233 AGGAGTTGGT
55 A-AAGGTGGA
** * * * **
8336243 GGTGGAGGTGGAAAAGGTGGAGGTATAGGAGGTGGAGCTGGAGGTGGTGCTGGAGGAGGAATTGG
1 GGTGGAGGTGGAAAAGGTGGAGGTATAGGAGGTGGAATTGGTGGTGGAGGTGGAAAAGG---TGG
*
8336308 T
63 A
8336309 GGTGGAGGTGGAAAAGGTGGAGGTATAGGAGGTGGAATTGGTGGTGGAGGTGGAAAAGGTGGA
1 GGTGGAGGTGGAAAAGGTGGAGGTATAGGAGGTGGAATTGGTGGTGGAGGTGGAAAAGGTGGA
** * * * *
8336372 GGTATAGGAGGTGGAATTGGTGGTGGAGGCATAGGA---GG---TGGTGCTGGAGGAGG---AGT
1 GG--T-GGAGGTGGAA---AAGGTGGAGGTATAGGAGGTGGAATTGGTGGTGGAGGTGGAAAAGG
*
8336428 TGGT
60 TGGA
** * * * **
8336432 GGTGGAGGTGGAAAAGGTGGAGGTATAGGAGGTGGAGCTGGAGGTGGTGCTGGAGGAGGAATTGG
1 GGTGGAGGTGGAAAAGGTGGAGGTATAGGAGGTGGAATTGGTGGTGGAGGTGGAAAAGG---TGG
*
8336497 T
63 A
8336498 GGTGGAGGTGGAAAAGGTGGAGGTATAGGAGGTGGAATTGGTGGTGGAGG
1 GGTGGAGGTGGAAAAGGTGGAGGTATAGGAGGTGGAATTGGTGGTGGAGG
8336548 CATAGGAGGT
Statistics
Matches: 387, Mismatches: 69, Indels: 85
0.72 0.13 0.16
Matches are distributed among these distances:
54 48 0.12
55 2 0.01
56 1 0.00
57 18 0.05
58 1 0.00
59 2 0.01
60 21 0.05
61 3 0.01
62 1 0.00
63 27 0.07
64 1 0.00
65 1 0.00
66 191 0.49
69 31 0.08
72 30 0.08
73 1 0.00
74 1 0.00
75 7 0.02
ACGTcount: A:0.23, C:0.02, G:0.54, T:0.20
Consensus pattern (63 bp):
GGTGGAGGTGGAAAAGGTGGAGGTATAGGAGGTGGAATTGGTGGTGGAGGTGGAAAAGGTGGA
Found at i:8336113 original size:96 final size:96
Alignment explanation
Indices: 8335775--8336116 Score: 467
Period size: 96 Copynumber: 3.5 Consensus size: 96
8335765 TATAGGTGGC
* * *
8335775 GGAGGTGGACTTGGTGGTGGAGGTGGAAAAGGTGGAGGTATAGGAGGAGGAATTGGTGGTGGAGG
1 GGAGGAGGAATTGGTGGTGGAGGTGGAAAAGGTGGAGGTATAGGAGGTGGAATTGGTGGTGGAGG
8335840 TGGAAAAGGTGGAGGCATAGGAGGTGGTGCT
66 TGGAAAAGGTGGAGGCATAGGAGGTGGTGCT
** * * * *
8335871 GGAGGAGGAATTGGTGGTGGAGGTGGAATTGGTGGTGGTGGT-GGAAAAGGTGGAGGTATAGGAG
1 GGAGGAGGAATTGGTGGTGGAGGTGGAAAAGGTGGAGGT-ATAGG---AGGTGGA---ATTGGTG
** *
8335935 GTGGATTTGG---TGGTGGAGGCATAGGAGGTGGTGCT
59 GTGGAGGTGGAAAAGGTGGAGGCATAGGAGGTGGTGCT
*
8335970 GGAGGAGGAATTGGTGGTGGAGGCGGAAAAGGTGGAGGTATAGGAGGTGGAATTGGTGGTGGAGG
1 GGAGGAGGAATTGGTGGTGGAGGTGGAAAAGGTGGAGGTATAGGAGGTGGAATTGGTGGTGGAGG
8336035 TGGAAAAGGTGGAGGCATAGGAGGTGGTGCT
66 TGGAAAAGGTGGAGGCATAGGAGGTGGTGCT
*
8336066 GGAGGAGGAGTTGGTGGTGGAGGTGGAAAAGGTGGAGGTATAGGAGGTGGA
1 GGAGGAGGAATTGGTGGTGGAGGTGGAAAAGGTGGAGGTATAGGAGGTGGA
8336117 GCTGGAGGTG
Statistics
Matches: 211, Mismatches: 24, Indels: 22
0.82 0.09 0.09
Matches are distributed among these distances:
93 13 0.06
96 116 0.55
97 1 0.00
98 1 0.00
99 67 0.32
102 13 0.06
ACGTcount: A:0.23, C:0.02, G:0.54, T:0.20
Consensus pattern (96 bp):
GGAGGAGGAATTGGTGGTGGAGGTGGAAAAGGTGGAGGTATAGGAGGTGGAATTGGTGGTGGAGG
TGGAAAAGGTGGAGGCATAGGAGGTGGTGCT
Found at i:8336154 original size:96 final size:95
Alignment explanation
Indices: 8335689--8336232 Score: 370
Period size: 96 Copynumber: 5.5 Consensus size: 95
8335679 GGTGGTGGGC
* *** * * *
8335689 TTGGCGGTGGAGGTGGTGCAGGTGGAGGTTTTGGAGGTGGAGCTGGTGGTGGTGCTGGAGGAGGA
1 TTGGTGGTGGAGGTGGAAAAGGTGGAGGTATAGGAGGTGGAGCTGGAGGTGGTGCTGGAGGAGGA
** * *
8335754 -AAAGGT-GGAGGTATAGGTGGC-GGAGGTGGAC
66 TGGAGGTAGGAGG--T-GGT-GCTGGAGGAGGAA
* ** * * * **
8335785 TTGGTGGTGGAGGTGGAAAAGGTGGAGGTATAGGAGGAGGAATTGGTGGTGGAGGTGGAAAAGG-
1 TTGGTGGTGGAGGTGGAAAAGGTGGAGGTATAGGAGGTGGAGCTGGAGGTGGTGCTGGAGGAGGA
8335849 TGGAGGCATAGGAGGTGGTGCTGGAGGAGGAA
66 TGGAGG--TAGGAGGTGGTGCTGGAGGAGGAA
** * * * *
8335881 TTGGTGGTGGAGGTGGAATTGGTGGTGGTGGT-GGAAAAGGTGGAGGTATAGGAGGTGGAT-TTG
1 TTGGTGGTGGAGGTGGAAAAGGTGGAGGT-ATAGG---AGGTGGA-G-CT-GGAGGTGG-TGCTG
* *
8335944 GTGGTGGA-GGCA--TAGGAGGTGGTGCTGGAGGAGGAA
58 GAGGAGGATGG-AGGTAGGAGGTGGTGCTGGAGGAGGAA
* ** * * * **
8335980 TTGGTGGTGGAGGCGGAAAAGGTGGAGGTATAGGAGGTGGAATTGGTGGTGGAGGTGGAAAAGG-
1 TTGGTGGTGGAGGTGGAAAAGGTGGAGGTATAGGAGGTGGAGCTGGAGGTGGTGCTGGAGGAGGA
*
8336044 TGGAGGCATAGGAGGTGGTGCTGGAGGAGGAG
66 TGGAGG--TAGGAGGTGGTGCTGGAGGAGGAA
8336076 TTGGTGGTGGAGGTGGAAAAGGTGGAGGTATAGGAGGTGGAGCTGGAGGTGGTGCTGGAGGAGGA
1 TTGGTGGTGGAGGTGGAAAAGGTGGAGGTATAGGAGGTGGAGCTGGAGGTGGTGCTGGAGGAGG-
* * * *
8336141 ATTGGTGGTGGAGGCGGAAAAGGTGGAGGTATAGGAGGTGGAA
65 A-TGGAGGT--A---GG---AGGTGG-TG-CT-GGAGGAGGAA
* *
8336184 TTGGTGGTGGAGGTGGAAAAGGTGGAGGCATAGGAGGTGGTGCTGGAGG
1 TTGGTGGTGGAGGTGGAAAAGGTGGAGGTATAGGAGGTGGAGCTGGAGG
8336233 AGGAGTTGGT
Statistics
Matches: 351, Mismatches: 61, Indels: 60
0.74 0.13 0.13
Matches are distributed among these distances:
92 1 0.00
93 14 0.04
94 1 0.00
95 2 0.01
96 179 0.51
97 3 0.01
98 2 0.01
99 68 0.19
101 1 0.00
102 16 0.05
103 1 0.00
105 6 0.02
106 1 0.00
107 1 0.00
108 55 0.16
ACGTcount: A:0.22, C:0.03, G:0.54, T:0.21
Consensus pattern (95 bp):
TTGGTGGTGGAGGTGGAAAAGGTGGAGGTATAGGAGGTGGAGCTGGAGGTGGTGCTGGAGGAGGA
TGGAGGTAGGAGGTGGTGCTGGAGGAGGAA
Found at i:8336505 original size:42 final size:40
Alignment explanation
Indices: 8336459--8336590 Score: 126
Period size: 42 Copynumber: 3.2 Consensus size: 40
8336449 TGGAGGTATA
8336459 GGAGGTGGAGCTGGAGGTGGTGCTGGAGGAGGAATTGGTGGT
1 GGAGGTGGA--TGGAGGTGGTGCTGGAGGAGGAATTGGTGGT
** * * *
8336501 GGAGGTGGA-AAAGGTGGAGGTATAGGAGGTGGAATTGGTGGT
1 GGAGGTGGATGGAGGTGG-TG-CT-GGAGGAGGAATTGGTGGT
* *
8336543 GGA-G-GCATAGGAGGTGGTGCTGGAGGAGGAGTTGGTGGT
1 GGAGGTGGAT-GGAGGTGGTGCTGGAGGAGGAATTGGTGGT
8336582 GGAGGTGGA
1 GGAGGTGGA
8336591 AAAGGTGGAG
Statistics
Matches: 70, Mismatches: 13, Indels: 15
0.71 0.13 0.15
Matches are distributed among these distances:
39 25 0.36
40 5 0.07
41 5 0.07
42 35 0.50
ACGTcount: A:0.20, C:0.03, G:0.56, T:0.20
Consensus pattern (40 bp):
GGAGGTGGATGGAGGTGGTGCTGGAGGAGGAATTGGTGGT
Found at i:8336521 original size:81 final size:81
Alignment explanation
Indices: 8335859--8336332 Score: 255
Period size: 81 Copynumber: 5.6 Consensus size: 81
8335849 TGGAGGCATA
* ** *
8335859 GGAGGTGGTGCTGGAGGAGGAATTGGTGGTGGAGGTGGAATTGGTGGTGGTGGTGGAAAAGGTGG
1 GGAGGTGGTGCTGGAGGAGGAGTTGGTGGTGGAGGTGGAA---AAGGTGGAGGTGGAAAAGGTGG
**
8335924 AGGTATAGGAGGTGGATTT
63 AGGTATAGGAGGTGGAGCT
* * * * * * * ** *
8335943 GGTGGTGGAG--GCA-TAGGAGGTGGTGCTGGAGGAGGAATTGGTGGTGGAGGCGGAAAAGGTGG
1 GGAGGTGGTGCTGGAGGAGGAGTTGGTGGTGGAGGTGGAA---AAGGTGGAGGTGGAAAAGGTGG
*
8336005 AGGTATAGGAGGTGGAATTGGTGGT
63 AGGTATAGGAGGTGG-A-----GCT
* * * * * ***
8336030 GGAGGTGGAAAAGGTGGAGGCATAGGAGGTGGTGCTGGAGGAGGAGTTGGTGGTGGAGGTGGAAA
1 GGAGGTGG---TGCTGGAGG---AGGAGTTGGTGGTGGAGGTGGA---AAAGGTGGAGGTGGAAA
8336095 AGGTGGAGGTATAGGAGGTGGAGCT
57 AGGTGGAGGTATAGGAGGTGGAGCT
* * * * *
8336120 GGAGGTGGTGCTGGAGGAGGAATTGGTGGTGGAGGCGGAAAAGGTGGAGGT---ATAGGAGGTGG
1 GGAGGTGGTGCTGGAGGAGGAGTTGGTGGTGGAGGTGGAAAAGGTGGAGGTGGAAAAGGTGGAGG
* * * *
8336182 AATTGGTGGTGGAGGT
66 TATAGGAGGTGGAGCT
* * * * * * * *
8336198 GGAAAAGGTGGAGGCATAGGAGGTGGTGCTGGAGGAGGAGTTGG---TGGTGGAGGTGGAAAAGG
1 GG---AGGTGG-TGC-T-GGAGGAGGAGTTGGTGGTGGAGGTGGAAAAGGTGGAGGTGGAAAAGG
8336260 TGGAGGTATAGGAGGTGGAGCT
60 TGGAGGTATAGGAGGTGGAGCT
*
8336282 GGAGGTGGTGCTGGAGGAGGAATTGGTGGTGGAGGTGGAAAAGGTGGAGGT
1 GGAGGTGGTGCTGGAGGAGGAGTTGGTGGTGGAGGTGGAAAAGGTGGAGGT
8336333 ATAGGAGGTG
Statistics
Matches: 300, Mismatches: 60, Indels: 63
0.71 0.14 0.15
Matches are distributed among these distances:
78 41 0.14
79 1 0.00
80 2 0.01
81 96 0.32
82 5 0.02
83 1 0.00
84 66 0.22
87 15 0.05
90 12 0.04
92 2 0.01
95 1 0.00
96 58 0.19
ACGTcount: A:0.23, C:0.03, G:0.54, T:0.20
Consensus pattern (81 bp):
GGAGGTGGTGCTGGAGGAGGAGTTGGTGGTGGAGGTGGAAAAGGTGGAGGTGGAAAAGGTGGAGG
TATAGGAGGTGGAGCT
Found at i:8336531 original size:81 final size:81
Alignment explanation
Indices: 8336456--8336613 Score: 259
Period size: 81 Copynumber: 2.0 Consensus size: 81
8336446 AGGTGGAGGT
8336456 ATAGGAGGTGGA-GC-T-GGAGGTGGTGCTGGAGGAGGAATTGGTGGTGGAGGTGGAAAAGGTGG
1 ATAGGAGGTGGAGGCATAGGAGGTGGTGCTGGAGGAGGAATTGGTGGTGGAGGTGGAAAAGGTGG
*
8336518 AGGTATAGGAGGTGGA
66 AGGCATAGGAGGTGGA
* * *
8336534 ATTGGTGGTGGAGGCATAGGAGGTGGTGCTGGAGGAGGAGTTGGTGGTGGAGGTGGAAAAGGTGG
1 ATAGGAGGTGGAGGCATAGGAGGTGGTGCTGGAGGAGGAATTGGTGGTGGAGGTGGAAAAGGTGG
8336599 AGGCATAGGAGGTGG
66 AGGCATAGGAGGTGG
8336614 TGTTGGAGGA
Statistics
Matches: 73, Mismatches: 4, Indels: 3
0.91 0.05 0.04
Matches are distributed among these distances:
78 10 0.14
79 2 0.03
80 1 0.01
81 60 0.82
ACGTcount: A:0.23, C:0.03, G:0.54, T:0.20
Consensus pattern (81 bp):
ATAGGAGGTGGAGGCATAGGAGGTGGTGCTGGAGGAGGAATTGGTGGTGGAGGTGGAAAAGGTGG
AGGCATAGGAGGTGGA
Found at i:8336555 original size:66 final size:65
Alignment explanation
Indices: 8336230--8336556 Score: 290
Period size: 66 Copynumber: 5.1 Consensus size: 65
8336220 GTGGTGCTGG
* * * *
8336230 AGGAGGAGTTGGTGGTGGAGGTGGAAAAGGTGGAGGTATAGGAGGTGGAGCTGGAGGTGG-TGCT
1 AGGAGGAATTGGTGGTGGAGGTGGAAAAGGTGGAGGTATAGGAGGTGGAACTGGTGGTGGAGGCT
*
8336294 GGAGGAGGAATTGGTGGTGGAGGTGGAAAAGGTGGAGGTATAGGAGGTGGAATTGGTGGTGGAGG
1 --AGGAGGAATTGGTGGTGGAGGTGGAAAAGGTGGAGGTATAGGAGGTGGAACTGGTGGTGGAGG
8336359 -T
64 CT
* * * ** * *
8336360 -GGA-AAAGGTGGAGGTATAGGAGGTGGAATTGGTGGTGGAGGCATAGGA---GG---TGGTGCT
1 AGGAGGAA-TTGGTGG--T-GGAGGTGGAA---AAGGTGGAGGTATAGGAGGTGGAACTGGTGGT
8336417 GGAGG--
59 GGAGGCT
* * *
8336422 AGGA-G--TTGGTGGTGGAGGTGGAAAAGGTGGAGGTATAGGAGGTGGAGCTGGAGGTGG-TGCT
1 AGGAGGAATTGGTGGTGGAGGTGGAAAAGGTGGAGGTATAGGAGGTGGAACTGGTGGTGGAGGCT
*
8336483 GGAGGAGGAATTGGTGGTGGAGGTGGAAAAGGTGGAGGTATAGGAGGTGGAATTGGTGGTGGAGG
1 --AGGAGGAATTGGTGGTGGAGGTGGAAAAGGTGGAGGTATAGGAGGTGGAACTGGTGGTGGAGG
8336548 CAT
64 C-T
8336551 AGGAGG
1 AGGAGG
8336557 TGGTGCTGGA
Statistics
Matches: 212, Mismatches: 25, Indels: 48
0.74 0.09 0.17
Matches are distributed among these distances:
54 14 0.07
57 12 0.06
58 1 0.00
59 1 0.00
60 12 0.06
62 2 0.01
63 26 0.12
64 1 0.00
65 1 0.00
66 124 0.58
67 3 0.01
68 1 0.00
69 14 0.07
ACGTcount: A:0.24, C:0.02, G:0.54, T:0.20
Consensus pattern (65 bp):
AGGAGGAATTGGTGGTGGAGGTGGAAAAGGTGGAGGTATAGGAGGTGGAACTGGTGGTGGAGGCT
Found at i:8336571 original size:66 final size:64
Alignment explanation
Indices: 8336405--8336664 Score: 180
Period size: 66 Copynumber: 3.9 Consensus size: 64
8336395 TGGAGGCATA
* * * *
8336405 GGAGGTGGTGCTGGAGGAGGAGTTGGTGGTGGAGGTGGAAAAGGTGGAGGTATAGGAGGTGGAGC
1 GGAGGTGGGGCTGGAGGAGGA--TGCTGGAGGAGGTGGAAAAGGTGGAGGTATAGGAGGTGGAAC
8336470 T
64 T
* * * *
8336471 GGAGGTGGTGCTGGAGGAGGAATTGGTGGTGGAGGTGGAAAAGGTGGAGGTATAGGAGGTGGAAT
1 GGAGGTGGGGCTGGAGGAGG-A-TGCTGGAGGAGGTGGAAAAGGTGGAGGTATAGGAGGTGGAAC
8336536 T
64 T
* * * ***** ** **
8336537 GGTGGTGGAGGCATAGGAGGTGG-TGCTGGAGGAGGAGTTGGTGGTGGAGGTGGAAAAGGTGGAG
1 GGAGGTGG-GGC-T-GGAGGAGGATGCTGGAGGAGGTGGAAAAGGTGGAGGTATAGGAGGTGGA-
*
8336601 GCAT
62 AC-T
* * * *
8336605 AGGAGGTGGTGTTGGAGGAGGAGTTGGTGGTGGAGGTGGAAAAGGTGGAGGTATAGGAGG
1 -GGAGGTGGGGCTGGAGGAGGA--TGCTGGAGGAGGTGGAAAAGGTGGAGGTATAGGAGG
8336665 AGGAGGTGGA
Statistics
Matches: 149, Mismatches: 35, Indels: 17
0.74 0.17 0.08
Matches are distributed among these distances:
66 104 0.70
67 4 0.03
68 3 0.02
69 38 0.26
ACGTcount: A:0.22, C:0.02, G:0.55, T:0.20
Consensus pattern (64 bp):
GGAGGTGGGGCTGGAGGAGGATGCTGGAGGAGGTGGAAAAGGTGGAGGTATAGGAGGTGGAACT
Found at i:8336573 original size:27 final size:27
Alignment explanation
Indices: 8336516--8336627 Score: 77
Period size: 27 Copynumber: 4.1 Consensus size: 27
8336506 TGGAAAAGGT
* * * *
8336516 GGAGGTATAGGAGGTGGAATTGGTGGT
1 GGAGGCATAGGAGGTGGAGTTGGAGGA
* *
8336543 GGAGGCATAGGAGGTGGTGCTGGAGGA
1 GGAGGCATAGGAGGTGGAGTTGGAGGA
* * * *
8336570 GGA-G--TTGGTGGTGGAGGTGGAAAAGGT
1 GGAGGCATAGGAGGTGGAGTTGG---AGGA
*
8336597 GGAGGCATAGGAGGTGGTGTTGGAGGA
1 GGAGGCATAGGAGGTGGAGTTGGAGGA
8336624 GGAG
1 GGAG
8336628 TTGGTGGTGG
Statistics
Matches: 63, Mismatches: 16, Indels: 12
0.69 0.18 0.13
Matches are distributed among these distances:
24 12 0.19
26 1 0.02
27 37 0.59
28 1 0.02
30 12 0.19
ACGTcount: A:0.22, C:0.03, G:0.55, T:0.20
Consensus pattern (27 bp):
GGAGGCATAGGAGGTGGAGTTGGAGGA
Found at i:8336610 original size:42 final size:42
Alignment explanation
Indices: 8336483--8336610 Score: 154
Period size: 42 Copynumber: 3.1 Consensus size: 42
8336473 AGGTGGTGCT
*
8336483 GGAGGAGGAATTGGTGGTGGAGGTGGAAAAGGTGGAGGTATA
1 GGAGGAGGAATTGGTGGTGGAGGTGGAAAAGGTGGAGGCATA
* *** ** *
8336525 GGAGGTGGAATTGGTGGTGGAGGCATAGGAGGTGG-TGC-T-
1 GGAGGAGGAATTGGTGGTGGAGGTGGAAAAGGTGGAGGCATA
*
8336564 GGAGGAGGAGTTGGTGGTGGAGGTGGAAAAGGTGGAGGCATA
1 GGAGGAGGAATTGGTGGTGGAGGTGGAAAAGGTGGAGGCATA
8336606 GGAGG
1 GGAGG
8336611 TGGTGTTGGA
Statistics
Matches: 67, Mismatches: 16, Indels: 6
0.75 0.18 0.07
Matches are distributed among these distances:
39 28 0.42
40 3 0.04
41 2 0.03
42 34 0.51
ACGTcount: A:0.24, C:0.02, G:0.55, T:0.19
Consensus pattern (42 bp):
GGAGGAGGAATTGGTGGTGGAGGTGGAAAAGGTGGAGGCATA
Found at i:8336613 original size:54 final size:54
Alignment explanation
Indices: 8336540--8336664 Score: 232
Period size: 54 Copynumber: 2.3 Consensus size: 54
8336530 TGGAATTGGT
8336540 GGTGGAGGCATAGGAGGTGGTGCTGGAGGAGGAGTTGGTGGTGGAGGTGGAAAA
1 GGTGGAGGCATAGGAGGTGGTGCTGGAGGAGGAGTTGGTGGTGGAGGTGGAAAA
*
8336594 GGTGGAGGCATAGGAGGTGGTGTTGGAGGAGGAGTTGGTGGTGGAGGTGGAAAA
1 GGTGGAGGCATAGGAGGTGGTGCTGGAGGAGGAGTTGGTGGTGGAGGTGGAAAA
*
8336648 GGTGGAGGTATAGGAGG
1 GGTGGAGGCATAGGAGG
8336665 AGGAGGTGGA
Statistics
Matches: 69, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
54 69 1.00
ACGTcount: A:0.22, C:0.02, G:0.56, T:0.19
Consensus pattern (54 bp):
GGTGGAGGCATAGGAGGTGGTGCTGGAGGAGGAGTTGGTGGTGGAGGTGGAAAA
Found at i:8336639 original size:12 final size:12
Alignment explanation
Indices: 8336054--8336644 Score: 102
Period size: 12 Copynumber: 44.2 Consensus size: 12
8336044 TGGAGGCATA
* *
8336054 GGAGGTGGTGCT
1 GGAGGTGGAGTT
*
8336066 GGAGGAGGAGTT
1 GGAGGTGGAGTT
* *
8336078 GGTGGTGGAGGT
1 GGAGGTGGAGTT
8336090 GGAAAAGGTGGAGGTAT
1 GG---AGGTGGA-GT-T
*
8336107 AGGAGGTGGAGCT
1 -GGAGGTGGAGTT
* *
8336120 GGAGGTGGTGCT
1 GGAGGTGGAGTT
* *
8336132 GGAGGAGGAATT
1 GGAGGTGGAGTT
* **
8336144 GGTGGTGGAGGC
1 GGAGGTGGAGTT
8336156 GGAAAAGGTGGAGGTAT
1 GG---AGGTGGA-GT-T
*
8336173 AGGAGGTGGAATT
1 -GGAGGTGGAGTT
* *
8336186 GGTGGTGGAGGT
1 GGAGGTGGAGTT
*
8336198 GGAAAAGGTGGAGGCATA
1 GG---AGGTGGA-G--TT
* *
8336216 GGAGGTGGTGCT
1 GGAGGTGGAGTT
*
8336228 GGAGGAGGAGTT
1 GGAGGTGGAGTT
* *
8336240 GGTGGTGGAGGT
1 GGAGGTGGAGTT
8336252 GGAAAAGGTGGAGGTAT
1 GG---AGGTGGA-GT-T
*
8336269 AGGAGGTGGAGCT
1 -GGAGGTGGAGTT
* *
8336282 GGAGGTGGTGCT
1 GGAGGTGGAGTT
* *
8336294 GGAGGAGGAATT
1 GGAGGTGGAGTT
* *
8336306 GGTGGTGGAGGT
1 GGAGGTGGAGTT
8336318 GGAAAAGGTGGAGGTAT
1 GG---AGGTGGA-GT-T
*
8336335 AGGAGGTGGAATT
1 -GGAGGTGGAGTT
* *
8336348 GGTGGTGGAGGT
1 GGAGGTGGAGTT
8336360 GGAAAAGGTGGAGGTAT
1 GG---AGGTGGA-GT-T
*
8336377 AGGAGGTGGAATT
1 -GGAGGTGGAGTT
* *
8336390 GGTGGTGGAGGCATA
1 GGAGGTGGA-G--TT
* *
8336405 GGAGGTGGTGCT
1 GGAGGTGGAGTT
*
8336417 GGAGGAGGAGTT
1 GGAGGTGGAGTT
* *
8336429 GGTGGTGGAGGT
1 GGAGGTGGAGTT
8336441 GGAAAAGGTGGAGGTAT
1 GG---AGGTGGA-GT-T
*
8336458 AGGAGGTGGAGCT
1 -GGAGGTGGAGTT
* *
8336471 GGAGGTGGTGCT
1 GGAGGTGGAGTT
* *
8336483 GGAGGAGGAATT
1 GGAGGTGGAGTT
* *
8336495 GGTGGTGGAGGT
1 GGAGGTGGAGTT
8336507 GGAAAAGGTGGAGGTAT
1 GG---AGGTGGA-GT-T
*
8336524 AGGAGGTGGAATT
1 -GGAGGTGGAGTT
* *
8336537 GGTGGTGGAGGCATA
1 GGAGGTGGA-G--TT
* *
8336552 GGAGGTGGTGCT
1 GGAGGTGGAGTT
*
8336564 GGAGGAGGAGTT
1 GGAGGTGGAGTT
* *
8336576 GGTGGTGGAGGT
1 GGAGGTGGAGTT
*
8336588 GGAAAAGGTGGAGGCATA
1 GG---AGGTGGA-G--TT
*
8336606 GGAGGTGGTGTT
1 GGAGGTGGAGTT
*
8336618 GGAGGAGGAGTT
1 GGAGGTGGAGTT
* *
8336630 GGTGGTGGAGGT
1 GGAGGTGGAGTT
8336642 GGA
1 GGA
8336645 AAAGGTGGAG
Statistics
Matches: 408, Mismatches: 111, Indels: 120
0.64 0.17 0.19
Matches are distributed among these distances:
12 226 0.55
13 7 0.02
14 11 0.03
15 131 0.32
16 9 0.02
17 6 0.01
18 18 0.04
ACGTcount: A:0.23, C:0.03, G:0.55, T:0.20
Consensus pattern (12 bp):
GGAGGTGGAGTT
Found at i:8336687 original size:54 final size:54
Alignment explanation
Indices: 8336023--8336529 Score: 237
Period size: 54 Copynumber: 8.7 Consensus size: 54
8336013 GAGGTGGAAT
* * * *
8336023 TGGTGGTGGAGGTGGAAAAGGTGGAGGCATAGGAGGTGGTGCTGGAGGAGGAGT
1 TGGTGGTGGAGGTGGAAAAGGTGGAGGCATAGGAGGAGGAGGTGGAGGAGGAGG
* * * * * *
8336077 TGGTGGTGGAGGTGGAAAAGGTGGAGGTATAGGAGGTGGAGCTGGAGGTGGTGC
1 TGGTGGTGGAGGTGGAAAAGGTGGAGGCATAGGAGGAGGAGGTGGAGGAGGAGG
* * ** * ** ** * * **
8336131 TGGAGGAGGAATTGG---TGGTGGAGGCGGAAAAGGTGGAGGTATAGGAGGTGGAAT
1 TGGTGGTGGAGGTGGAAAAGGTGGAGGCATAGGAGGAGGAGG--T-GGAGGAGGAGG
* * * *
8336185 TGGTGGTGGAGGTGGAAAAGGTGGAGGCATAGGAGGTGGTGCTGGAGGAGGAGT
1 TGGTGGTGGAGGTGGAAAAGGTGGAGGCATAGGAGGAGGAGGTGGAGGAGGAGG
* *
8336239 TGGTGGTGGAGGTGGAAAAGGTGGAGGTATAGGAGGTGGAGCTGGAGGTGGTGCTGGAGGAGG
1 TGGTGGTGGAGGTGGAAAAGGTGGAGGCATAGGA---GGA---GGAGGT-G-G-AGGAGGAGG
* * *
8336302 AATTGGTGGTGGAGGTGGAAAAGGTGGAGGTATAGGAGGTGGAATTGGTGGTGGAGGTGGAAAAG
1 ---TGGTGGTGGAGGTGGAAAAGGTGGAGGCATAGGA---GG-A--GGAGGTGGAGGAGG---AG
8336367 G
54 G
* ** * * * *
8336368 TGGAGGTATAGGAGGTGGAATTGGTGGTGGAGGCATAGGAGGTGGTGCTGGAGGAGGAGT
1 TGGTGG--T-GGAGGTGGAA---AAGGTGGAGGCATAGGAGGAGGAGGTGGAGGAGGAGG
* *
8336428 TGGTGGTGGAGGTGGAAAAGGTGGAGGTATAGGAGGTGGAGCTGGAGGTGGTGCTGGAGGAGG
1 TGGTGGTGGAGGTGGAAAAGGTGGAGGCATAGGA---GGA---GGAGGT-G-G-AGGAGGAGG
*
8336491 AATTGGTGGTGGAGGTGGAAAAGGTGGAGGTATAGGAGG
1 ---TGGTGGTGGAGGTGGAAAAGGTGGAGGCATAGGAGG
8336530 TGGAATTGGT
Statistics
Matches: 354, Mismatches: 59, Indels: 71
0.73 0.12 0.15
Matches are distributed among these distances:
51 17 0.05
53 1 0.00
54 135 0.38
55 1 0.00
57 31 0.09
58 1 0.00
60 15 0.04
61 2 0.01
62 2 0.01
63 37 0.10
64 1 0.00
65 2 0.01
66 94 0.27
67 1 0.00
69 14 0.04
ACGTcount: A:0.23, C:0.03, G:0.54, T:0.20
Consensus pattern (54 bp):
TGGTGGTGGAGGTGGAAAAGGTGGAGGCATAGGAGGAGGAGGTGGAGGAGGAGG
Found at i:8337258 original size:3 final size:3
Alignment explanation
Indices: 8337250--8337286 Score: 74
Period size: 3 Copynumber: 12.3 Consensus size: 3
8337240 GTATTAAAAT
8337250 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA T
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA T
8337287 CAGAAAAAAG
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 34 1.00
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (3 bp):
TTA
Found at i:8343347 original size:2 final size:2
Alignment explanation
Indices: 8343340--8343367 Score: 56
Period size: 2 Copynumber: 14.0 Consensus size: 2
8343330 TGGCAAATTC
8343340 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
8343368 CAAATCATCA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:8350322 original size:32 final size:32
Alignment explanation
Indices: 8350276--8350336 Score: 88
Period size: 32 Copynumber: 1.9 Consensus size: 32
8350266 TTGCCTTAGC
8350276 TTCTTCTTCGGGTTATGCT-GTTAACTTCTTGT
1 TTCTTCTTCGGGTTATG-TGGTTAACTTCTTGT
**
8350308 TTCTTCTTTTGGTTATGTGGTTAACTTCT
1 TTCTTCTTCGGGTTATGTGGTTAACTTCT
8350337 AGAAAAGGAG
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
31 1 0.04
32 25 0.96
ACGTcount: A:0.10, C:0.16, G:0.18, T:0.56
Consensus pattern (32 bp):
TTCTTCTTCGGGTTATGTGGTTAACTTCTTGT
Found at i:8353037 original size:2 final size:2
Alignment explanation
Indices: 8353030--8353061 Score: 64
Period size: 2 Copynumber: 16.0 Consensus size: 2
8353020 AAAACATAAA
8353030 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
8353062 GTTCTCCATT
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 30 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:8353130 original size:23 final size:23
Alignment explanation
Indices: 8353097--8353149 Score: 90
Period size: 23 Copynumber: 2.3 Consensus size: 23
8353087 ATCTTCACCT
8353097 ATAA-ATATAAAATAAAATGATA
1 ATAATATATAAAATAAAATGATA
*
8353119 ATAGTATATAAAATAAAATGATA
1 ATAATATATAAAATAAAATGATA
8353142 ATAATATA
1 ATAATATA
8353150 AAGTATTATA
Statistics
Matches: 28, Mismatches: 2, Indels: 1
0.90 0.06 0.03
Matches are distributed among these distances:
22 3 0.11
23 25 0.89
ACGTcount: A:0.64, C:0.00, G:0.06, T:0.30
Consensus pattern (23 bp):
ATAATATATAAAATAAAATGATA
Found at i:8359727 original size:18 final size:18
Alignment explanation
Indices: 8359696--8359730 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
8359686 TATATATATA
* *
8359696 TATGTGTGTGTGTGTATG
1 TATGTATGTATGTGTATG
8359714 TATGTATGTATGTGTAT
1 TATGTATGTATGTGTAT
8359731 TATACATTTC
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.17, C:0.00, G:0.31, T:0.51
Consensus pattern (18 bp):
TATGTATGTATGTGTATG
Found at i:8360492 original size:1 final size:1
Alignment explanation
Indices: 8360486--8360511 Score: 52
Period size: 1 Copynumber: 26.0 Consensus size: 1
8360476 AAGCTTTCAA
8360486 CCCCCCCCCCCCCCCCCCCCCCCCCC
1 CCCCCCCCCCCCCCCCCCCCCCCCCC
8360512 AAAAACCATA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
1 25 1.00
ACGTcount: A:0.00, C:1.00, G:0.00, T:0.00
Consensus pattern (1 bp):
C
Found at i:8361813 original size:19 final size:21
Alignment explanation
Indices: 8361791--8361836 Score: 69
Period size: 21 Copynumber: 2.3 Consensus size: 21
8361781 TTTTTTTTTT
*
8361791 TTTTTAAT-TTATTT-TTATA
1 TTTTTAATCGTATTTATTATA
8361810 TTTTTAATCGTATTTATTATA
1 TTTTTAATCGTATTTATTATA
8361831 TTTTTA
1 TTTTTA
8361837 TATTATATGA
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
19 8 0.33
20 5 0.21
21 11 0.46
ACGTcount: A:0.26, C:0.02, G:0.02, T:0.70
Consensus pattern (21 bp):
TTTTTAATCGTATTTATTATA
Found at i:8361813 original size:21 final size:23
Alignment explanation
Indices: 8361789--8361835 Score: 57
Period size: 19 Copynumber: 2.2 Consensus size: 23
8361779 GGTTTTTTTT
*
8361789 TTTTTTTAAT-TTATTT-TTATA
1 TTTTTTTAATCGTATTTATTATA
8361810 --TTTTTAATCGTATTTATTATA
1 TTTTTTTAATCGTATTTATTATA
8361831 TTTTT
1 TTTTT
8361836 ATATTATATG
Statistics
Matches: 21, Mismatches: 1, Indels: 6
0.75 0.04 0.21
Matches are distributed among these distances:
19 8 0.38
20 5 0.24
21 5 0.24
23 3 0.14
ACGTcount: A:0.23, C:0.02, G:0.02, T:0.72
Consensus pattern (23 bp):
TTTTTTTAATCGTATTTATTATA
Found at i:8362702 original size:2 final size:2
Alignment explanation
Indices: 8362695--8362724 Score: 53
Period size: 2 Copynumber: 15.5 Consensus size: 2
8362685 CATTATTTTA
8362695 AT AT AT AT AT AT AT AT AT A- AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
8362725 CATCTATGCT
Statistics
Matches: 27, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
1 1 0.04
2 26 0.96
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (2 bp):
AT
Found at i:8362913 original size:37 final size:37
Alignment explanation
Indices: 8362829--8362913 Score: 86
Period size: 37 Copynumber: 2.3 Consensus size: 37
8362819 AAAAATTTAA
* *
8362829 AATTATATTAATAATAATATAAATTAATAGATAATTAT
1 AATTAT-TTTATAAAAATATAAATTAATAGATAATTAT
*
8362867 ATATT-TTTTATAAAAATATATAATTTA-AGATCAATT-T
1 A-ATTATTTTATAAAAATATA-AATTAATAGAT-AATTAT
8362904 AATTATTTTA
1 AATTATTTTA
8362914 ATATATAATA
Statistics
Matches: 40, Mismatches: 3, Indels: 9
0.77 0.06 0.17
Matches are distributed among these distances:
36 3 0.08
37 23 0.57
38 11 0.28
39 3 0.08
ACGTcount: A:0.49, C:0.01, G:0.02, T:0.47
Consensus pattern (37 bp):
AATTATTTTATAAAAATATAAATTAATAGATAATTAT
Found at i:8362946 original size:200 final size:200
Alignment explanation
Indices: 8362712--8363091 Score: 604
Period size: 200 Copynumber: 1.9 Consensus size: 200
8362702 TATATATATA
*
8362712 TAATATATATATACATCTATGCTTATCTTATCTATACTATATTAAAAGGGTTAATTGAATTAATA
1 TAATATATATATACATCTATGCTTATCTTATCTATACTATATTAAAAGGATTAATTGAATTAATA
8362777 TTATAAATTAATCAGATATTATATTTAATCAACAAAATTA-TTAAAAATTTAAAATTATATTAAT
66 TTATAAATTAATCAGATATTA-ATTTAATCAACAAAATTATTTAAAAATTTAAAATTATATTAAT
* *
8362841 AATAATATAAATTAATAGATAATTATATATTTTTTATAAAAATATATAATTTAAGATCAATTTAA
130 AATAATATAAATTAATAAATAATTATATATTTTATATAAAAATATATAATTTAAGATCAATTTAA
8362906 TTATTT
195 TTATTT
* *
8362912 TAATATATA-ATACATCTAGATGTTTATC-TATCTATGCTATATTAAAAGGATTAATTGAATTAA
1 TAATATATATATACATCT--ATGCTTATCTTATCTATACTATATTAAAAGGATTAATTGAATTAA
* * * * * *
8362975 TATTATAAGTTAATCAGATATTAATTTAGTCAATAAATTTATTTAAAATTTTTAAATTATATTAA
64 TATTATAAATTAATCAGATATTAATTTAATCAACAAAATTATTTAAAAATTTAAAATTATATTAA
*
8363040 TAATAATATAAATTGATAAATAATTATATATTTTATATAAAAATATATAATT
129 TAATAATATAAATTAATAAATAATTATATATTTTATATAAAAATATATAATT
8363092 ATTCATTAAT
Statistics
Matches: 165, Mismatches: 12, Indels: 6
0.90 0.07 0.03
Matches are distributed among these distances:
199 23 0.14
200 134 0.81
201 8 0.05
ACGTcount: A:0.47, C:0.04, G:0.05, T:0.44
Consensus pattern (200 bp):
TAATATATATATACATCTATGCTTATCTTATCTATACTATATTAAAAGGATTAATTGAATTAATA
TTATAAATTAATCAGATATTAATTTAATCAACAAAATTATTTAAAAATTTAAAATTATATTAATA
ATAATATAAATTAATAAATAATTATATATTTTATATAAAAATATATAATTTAAGATCAATTTAAT
TATTT
Found at i:8363582 original size:22 final size:21
Alignment explanation
Indices: 8363557--8363610 Score: 65
Period size: 22 Copynumber: 2.4 Consensus size: 21
8363547 AAATTTAATT
8363557 AATAAATTATTT-TATTATTTAA
1 AATAAATT-TTTATATT-TTTAA
8363579 AATAATATTTTTATATTTTTAA
1 AATAA-ATTTTTATATTTTTAA
8363601 AATTAAATTT
1 AA-TAAATTT
8363611 AAATAAAAAT
Statistics
Matches: 29, Mismatches: 0, Indels: 6
0.83 0.00 0.17
Matches are distributed among these distances:
22 19 0.66
23 10 0.34
ACGTcount: A:0.44, C:0.00, G:0.00, T:0.56
Consensus pattern (21 bp):
AATAAATTTTTATATTTTTAA
Found at i:8365702 original size:10 final size:10
Alignment explanation
Indices: 8365683--8365711 Score: 51
Period size: 10 Copynumber: 3.0 Consensus size: 10
8365673 GTTTGGACTT
8365683 TAAT-ATAAA
1 TAATAATAAA
8365692 TAATAATAAA
1 TAATAATAAA
8365702 TAATAATAAA
1 TAATAATAAA
8365712 AACAATTCCA
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
9 4 0.21
10 15 0.79
ACGTcount: A:0.69, C:0.00, G:0.00, T:0.31
Consensus pattern (10 bp):
TAATAATAAA
Found at i:8366415 original size:19 final size:20
Alignment explanation
Indices: 8366380--8366420 Score: 50
Period size: 19 Copynumber: 2.1 Consensus size: 20
8366370 TAATATTTTT
*
8366380 AATTAAATTTGATATT-ATA
1 AATTAAATTTGAAATTAATA
8366399 AATTAAACTTT-AAATTAATA
1 AATTAAA-TTTGAAATTAATA
8366419 AA
1 AA
8366421 AAAATTAATT
Statistics
Matches: 19, Mismatches: 1, Indels: 3
0.83 0.04 0.13
Matches are distributed among these distances:
19 11 0.58
20 8 0.42
ACGTcount: A:0.54, C:0.02, G:0.02, T:0.41
Consensus pattern (20 bp):
AATTAAATTTGAAATTAATA
Found at i:8366415 original size:31 final size:30
Alignment explanation
Indices: 8366355--8366416 Score: 72
Period size: 31 Copynumber: 2.0 Consensus size: 30
8366345 ATTTTATCAT
* * *
8366355 AATTTATATTATTAATAATATTTTTAATTA
1 AATTTATATTATAAATAATACTTTAAATTA
8366385 AATTTGATATTATAAATTAA-ACTTTAAATTA
1 AATTT-ATATTATAAA-TAATACTTTAAATTA
8366416 A
1 A
8366417 TAAAAAAATT
Statistics
Matches: 27, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
30 5 0.19
31 19 0.70
32 3 0.11
ACGTcount: A:0.47, C:0.02, G:0.02, T:0.50
Consensus pattern (30 bp):
AATTTATATTATAAATAATACTTTAAATTA
Found at i:8367304 original size:11 final size:12
Alignment explanation
Indices: 8367274--8367307 Score: 52
Period size: 12 Copynumber: 2.9 Consensus size: 12
8367264 TTATAAGATA
8367274 TATAATATTTTT
1 TATAATATTTTT
*
8367286 TATGATATTTTT
1 TATAATATTTTT
8367298 T-TAATATTTT
1 TATAATATTTT
8367308 AATTTTAAAA
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
11 8 0.40
12 12 0.60
ACGTcount: A:0.29, C:0.00, G:0.03, T:0.68
Consensus pattern (12 bp):
TATAATATTTTT
Found at i:8367950 original size:15 final size:15
Alignment explanation
Indices: 8367932--8367965 Score: 50
Period size: 15 Copynumber: 2.3 Consensus size: 15
8367922 TAATTATTAT
*
8367932 AATTTTTTATATAAA
1 AATTTTTTAAATAAA
*
8367947 AATTTTTTAAATTAA
1 AATTTTTTAAATAAA
8367962 AATT
1 AATT
8367966 ATTTGCTAAT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (15 bp):
AATTTTTTAAATAAA
Found at i:8370673 original size:2 final size:2
Alignment explanation
Indices: 8370666--8370695 Score: 60
Period size: 2 Copynumber: 15.0 Consensus size: 2
8370656 ATCTATTTAC
8370666 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
8370696 GGTTTCAAAT
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 28 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:8376297 original size:2 final size:2
Alignment explanation
Indices: 8376290--8376325 Score: 63
Period size: 2 Copynumber: 18.0 Consensus size: 2
8376280 GTTCATATGC
*
8376290 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AC AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
8376326 TTTTGCTAAA
Statistics
Matches: 32, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
2 32 1.00
ACGTcount: A:0.50, C:0.03, G:0.00, T:0.47
Consensus pattern (2 bp):
AT
Found at i:8376401 original size:2 final size:2
Alignment explanation
Indices: 8376394--8376431 Score: 58
Period size: 2 Copynumber: 19.0 Consensus size: 2
8376384 GTTCATATGC
* *
8376394 AT AT AT AT AT AT AT AT AT AT GT GT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
8376432 TCTTTATTCT
Statistics
Matches: 34, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
2 34 1.00
ACGTcount: A:0.45, C:0.00, G:0.05, T:0.50
Consensus pattern (2 bp):
AT
Found at i:8379281 original size:3 final size:3
Alignment explanation
Indices: 8379273--8379308 Score: 63
Period size: 3 Copynumber: 12.0 Consensus size: 3
8379263 GTTTAAGCCC
*
8379273 TTA TTA TTA TTA TTA TTT TTA TTA TTA TTA TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
8379309 GGTATATAGC
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
3 31 1.00
ACGTcount: A:0.31, C:0.00, G:0.00, T:0.69
Consensus pattern (3 bp):
TTA
Found at i:8381647 original size:22 final size:23
Alignment explanation
Indices: 8381622--8381665 Score: 54
Period size: 22 Copynumber: 2.0 Consensus size: 23
8381612 ATTATGGATT
* *
8381622 TATATTTAATATATT-AATAATG
1 TATAATTAATAAATTAAATAATG
*
8381644 TATAATTATTAAATTAAATAAT
1 TATAATTAATAAATTAAATAAT
8381666 ATTATATCGT
Statistics
Matches: 18, Mismatches: 3, Indels: 1
0.82 0.14 0.05
Matches are distributed among these distances:
22 12 0.67
23 6 0.33
ACGTcount: A:0.50, C:0.00, G:0.02, T:0.48
Consensus pattern (23 bp):
TATAATTAATAAATTAAATAATG
Found at i:8382649 original size:2 final size:2
Alignment explanation
Indices: 8382642--8382669 Score: 56
Period size: 2 Copynumber: 14.0 Consensus size: 2
8382632 GCAAACAATT
8382642 TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA
8382670 CTTTTAAATT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:8383509 original size:2 final size:2
Alignment explanation
Indices: 8383504--8383530 Score: 54
Period size: 2 Copynumber: 13.5 Consensus size: 2
8383494 TGTGTGTGTG
8383504 TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA T
8383531 CAATGGGATA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 25 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:8386938 original size:17 final size:17
Alignment explanation
Indices: 8386912--8386951 Score: 53
Period size: 17 Copynumber: 2.4 Consensus size: 17
8386902 ATATTATTAA
*
8386912 AAATAATATAAATATAT
1 AAATATTATAAATATAT
*
8386929 AAATATTATATATATAT
1 AAATATTATAAATATAT
*
8386946 ATATAT
1 AAATAT
8386952 ATCAAAGTGT
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
17 20 1.00
ACGTcount: A:0.57, C:0.00, G:0.00, T:0.42
Consensus pattern (17 bp):
AAATATTATAAATATAT
Found at i:8397934 original size:2 final size:2
Alignment explanation
Indices: 8397927--8397961 Score: 70
Period size: 2 Copynumber: 17.5 Consensus size: 2
8397917 ATCTTTACAT
8397927 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
8397962 GTTCCAGCTG
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 33 1.00
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (2 bp):
TA
Found at i:8399490 original size:6 final size:6
Alignment explanation
Indices: 8399461--8399516 Score: 55
Period size: 6 Copynumber: 9.8 Consensus size: 6
8399451 TCGTAAAAAG
* ** *
8399461 TTTAAA TTT-AA TTTAAA ATT-AA TTTAAA TTTATT TTTAAA TTTGAA
1 TTTAAA TTTAAA TTTAAA TTTAAA TTTAAA TTTAAA TTTAAA TTTAAA
8399507 TTT-AA TTTAA
1 TTTAAA TTTAA
8399517 TATAAAAATT
Statistics
Matches: 40, Mismatches: 7, Indels: 6
0.75 0.13 0.11
Matches are distributed among these distances:
5 14 0.35
6 26 0.65
ACGTcount: A:0.43, C:0.00, G:0.02, T:0.55
Consensus pattern (6 bp):
TTTAAA
Found at i:8399510 original size:12 final size:11
Alignment explanation
Indices: 8399461--8399522 Score: 72
Period size: 11 Copynumber: 5.5 Consensus size: 11
8399451 TCGTAAAAAG
8399461 TTTAAATTTAA
1 TTTAAATTTAA
*
8399472 TTTAAAATTAA
1 TTTAAATTTAA
*
8399483 TTTAAATTTATT
1 TTTAAATTTA-A
8399495 TTTAAATTTGAA
1 TTTAAATTT-AA
8399507 TTT-AATTTAA
1 TTTAAATTTAA
*
8399517 TATAAA
1 TTTAAA
8399523 AATTAAAATA
Statistics
Matches: 43, Mismatches: 5, Indels: 6
0.80 0.09 0.11
Matches are distributed among these distances:
10 4 0.09
11 26 0.60
12 12 0.28
13 1 0.02
ACGTcount: A:0.45, C:0.00, G:0.02, T:0.53
Consensus pattern (11 bp):
TTTAAATTTAA
Found at i:8399590 original size:13 final size:13
Alignment explanation
Indices: 8399572--8399619 Score: 53
Period size: 12 Copynumber: 3.7 Consensus size: 13
8399562 TTAATAAAAA
8399572 TATATTTAATTTT
1 TATATTTAATTTT
8399585 TATATTTAA-TTT
1 TATATTTAATTTT
* *
8399597 TAAATTTGATTATT
1 TATATTTAATT-TT
*
8399611 TATGTTTAA
1 TATATTTAA
8399620 ATTTAAATTA
Statistics
Matches: 28, Mismatches: 5, Indels: 3
0.78 0.14 0.08
Matches are distributed among these distances:
12 10 0.36
13 10 0.36
14 8 0.29
ACGTcount: A:0.33, C:0.00, G:0.04, T:0.62
Consensus pattern (13 bp):
TATATTTAATTTT
Found at i:8399619 original size:26 final size:25
Alignment explanation
Indices: 8399575--8399628 Score: 72
Period size: 26 Copynumber: 2.1 Consensus size: 25
8399565 ATAAAAATAT
*
8399575 ATTTAATTTTTATATTTAATTTTAA
1 ATTTAATTTTTATATTTAAATTTAA
* *
8399600 ATTTGATTATTTATGTTTAAATTTAA
1 ATTTAATT-TTTATATTTAAATTTAA
8399626 ATT
1 ATT
8399629 AAAAATTTTT
Statistics
Matches: 25, Mismatches: 3, Indels: 1
0.86 0.10 0.03
Matches are distributed among these distances:
25 7 0.28
26 18 0.72
ACGTcount: A:0.35, C:0.00, G:0.04, T:0.61
Consensus pattern (25 bp):
ATTTAATTTTTATATTTAAATTTAA
Found at i:8399755 original size:21 final size:21
Alignment explanation
Indices: 8399716--8399755 Score: 53
Period size: 21 Copynumber: 1.9 Consensus size: 21
8399706 AAAATACTTA
*
8399716 AATTTAATTATTATCAAATTT
1 AATTTAATTATTATAAAATTT
* *
8399737 AATTTAATTTTTTTAAAAT
1 AATTTAATTATTATAAAAT
8399756 AAATTCAAAT
Statistics
Matches: 16, Mismatches: 3, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
21 16 1.00
ACGTcount: A:0.42, C:0.03, G:0.00, T:0.55
Consensus pattern (21 bp):
AATTTAATTATTATAAAATTT
Found at i:8400156 original size:6 final size:6
Alignment explanation
Indices: 8400145--8400184 Score: 80
Period size: 6 Copynumber: 6.7 Consensus size: 6
8400135 CATTCCATTC
8400145 CTCCCT CTCCCT CTCCCT CTCCCT CTCCCT CTCCCT CTCC
1 CTCCCT CTCCCT CTCCCT CTCCCT CTCCCT CTCCCT CTCC
8400185 TCCCTCCGTT
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 34 1.00
ACGTcount: A:0.00, C:0.68, G:0.00, T:0.33
Consensus pattern (6 bp):
CTCCCT
Found at i:8403990 original size:2 final size:2
Alignment explanation
Indices: 8403979--8404010 Score: 50
Period size: 2 Copynumber: 17.0 Consensus size: 2
8403969 GTTTGCATGC
8403979 AT AT -T AT AT AT AT AT AT A- AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
8404011 GTATTCTCCT
Statistics
Matches: 28, Mismatches: 0, Indels: 4
0.88 0.00 0.12
Matches are distributed among these distances:
1 2 0.07
2 26 0.93
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:8404000 original size:13 final size:13
Alignment explanation
Indices: 8403979--8404009 Score: 53
Period size: 13 Copynumber: 2.4 Consensus size: 13
8403969 GTTTGCATGC
*
8403979 ATATTATATATAT
1 ATATAATATATAT
8403992 ATATAATATATAT
1 ATATAATATATAT
8404005 ATATA
1 ATATA
8404010 TGTATTCTCC
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
13 17 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (13 bp):
ATATAATATATAT
Found at i:8405465 original size:2 final size:2
Alignment explanation
Indices: 8405458--8405494 Score: 67
Period size: 2 Copynumber: 19.0 Consensus size: 2
8405448 AAGTTTGGTT
8405458 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T- TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
8405495 GTTTTATGGA
Statistics
Matches: 34, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
1 1 0.03
2 33 0.97
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (2 bp):
TA
Found at i:8405822 original size:3 final size:3
Alignment explanation
Indices: 8405814--8405849 Score: 72
Period size: 3 Copynumber: 12.0 Consensus size: 3
8405804 ATAGCGGCAG
8405814 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
8405850 AACCTAAAGA
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 33 1.00
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (3 bp):
TAA
Found at i:8406042 original size:16 final size:17
Alignment explanation
Indices: 8406023--8406064 Score: 61
Period size: 16 Copynumber: 2.6 Consensus size: 17
8406013 AAATTTATTT
8406023 AAAATTTAATTTAT-GA
1 AAAATTTAATTTATCGA
*
8406039 AAAA-TAAATTTATCGA
1 AAAATTTAATTTATCGA
8406055 AAAATTTAAT
1 AAAATTTAAT
8406065 CTTTAATCAG
Statistics
Matches: 22, Mismatches: 2, Indels: 3
0.81 0.07 0.11
Matches are distributed among these distances:
15 8 0.36
16 10 0.45
17 4 0.18
ACGTcount: A:0.55, C:0.02, G:0.05, T:0.38
Consensus pattern (17 bp):
AAAATTTAATTTATCGA
Found at i:8406640 original size:2 final size:2
Alignment explanation
Indices: 8406633--8406657 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
8406623 TTCCTCAAAA
8406633 AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT A
8406658 AAATTTTAAT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:8406803 original size:18 final size:20
Alignment explanation
Indices: 8406766--8406803 Score: 53
Period size: 18 Copynumber: 2.0 Consensus size: 20
8406756 ATGATTGTAA
*
8406766 TATAATATTAAAATATTTTT
1 TATAATATTAAAATAATTTT
8406786 TATAAT-TT-AAATAATTTT
1 TATAATATTAAAATAATTTT
8406804 ACTCATTAAT
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
18 9 0.53
19 2 0.12
20 6 0.35
ACGTcount: A:0.45, C:0.00, G:0.00, T:0.55
Consensus pattern (20 bp):
TATAATATTAAAATAATTTT
Found at i:8412636 original size:3 final size:3
Alignment explanation
Indices: 8412630--8412666 Score: 74
Period size: 3 Copynumber: 12.3 Consensus size: 3
8412620 CATTAGTAGT
8412630 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA T
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA T
8412667 CTTACACTTA
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 34 1.00
ACGTcount: A:0.65, C:0.00, G:0.00, T:0.35
Consensus pattern (3 bp):
TAA
Found at i:8414948 original size:2 final size:2
Alignment explanation
Indices: 8414941--8414987 Score: 58
Period size: 2 Copynumber: 23.5 Consensus size: 2
8414931 AAGCCTGCTA
* * * *
8414941 AT AT AT AT AT AT AT AT AT AT AC AA AT AC AG AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
8414983 AT AT A
1 AT AT A
8414988 CCTATTGATT
Statistics
Matches: 39, Mismatches: 6, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
2 39 1.00
ACGTcount: A:0.53, C:0.04, G:0.02, T:0.40
Consensus pattern (2 bp):
AT
Found at i:8415262 original size:21 final size:21
Alignment explanation
Indices: 8415238--8415277 Score: 64
Period size: 21 Copynumber: 1.9 Consensus size: 21
8415228 AATTTTTATT
8415238 TAAAT-TTAATTATAAAATATA
1 TAAATATTAA-TATAAAATATA
8415259 TAAATATTAATATAAAATA
1 TAAATATTAATATAAAATA
8415278 ATTTTTAATA
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
21 14 0.78
22 4 0.22
ACGTcount: A:0.60, C:0.00, G:0.00, T:0.40
Consensus pattern (21 bp):
TAAATATTAATATAAAATATA
Found at i:8424387 original size:30 final size:30
Alignment explanation
Indices: 8424343--8424466 Score: 126
Period size: 30 Copynumber: 4.1 Consensus size: 30
8424333 GATTTAAATT
8424343 AGATAGTAAGTGCACTAATCCTTAATCTAAG
1 AGATAGT-AGTGCACTAATCCTTAATCTAAG
*
8424374 AGATAGTAGTGCACTAGTCCTTAAT-TAAG
1 AGATAGTAGTGCACTAATCCTTAATCTAAG
* * *
8424403 GGATAAT-GATGTACTAATCCTTAATCTAAG
1 AGATAGTAG-TGCACTAATCCTTAATCTAAG
* * * * * *
8424433 GGATAGTGGTACACTAGTCTTTAATTTAAG
1 AGATAGTAGTGCACTAATCCTTAATCTAAG
8424463 AGAT
1 AGAT
8424467 TTAAATTAGA
Statistics
Matches: 78, Mismatches: 12, Indels: 7
0.80 0.12 0.07
Matches are distributed among these distances:
28 1 0.01
29 23 0.29
30 46 0.59
31 8 0.10
ACGTcount: A:0.35, C:0.13, G:0.19, T:0.32
Consensus pattern (30 bp):
AGATAGTAGTGCACTAATCCTTAATCTAAG
Found at i:8429737 original size:2 final size:2
Alignment explanation
Indices: 8429699--8429726 Score: 56
Period size: 2 Copynumber: 14.0 Consensus size: 2
8429689 TATAAATTTG
8429699 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
8429727 TCATGTATAT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:8430901 original size:2 final size:2
Alignment explanation
Indices: 8430894--8430921 Score: 56
Period size: 2 Copynumber: 14.0 Consensus size: 2
8430884 TCAGTACACG
8430894 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
8430922 GGTGGTCAAG
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:8433146 original size:4 final size:4
Alignment explanation
Indices: 8433137--8433215 Score: 104
Period size: 4 Copynumber: 19.8 Consensus size: 4
8433127 TACAAACATC
* * * * *
8433137 TATA TATA TACA TATA TATA TACA TACA TATA TATA TATA TACA TACA
1 TATA TATA TATA TATA TATA TATA TATA TATA TATA TATA TATA TATA
*
8433185 TATA TATA TATG TATA TATA TATA TATA TAT
1 TATA TATA TATA TATA TATA TATA TATA TAT
8433216 TAACATGTGG
Statistics
Matches: 67, Mismatches: 8, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
4 67 1.00
ACGTcount: A:0.48, C:0.06, G:0.01, T:0.44
Consensus pattern (4 bp):
TATA
Found at i:8435292 original size:20 final size:20
Alignment explanation
Indices: 8435267--8435307 Score: 73
Period size: 20 Copynumber: 2.0 Consensus size: 20
8435257 TGACTGCGTC
*
8435267 GAAAGAGGGCCACGTACTTA
1 GAAAGAGGGCCAAGTACTTA
8435287 GAAAGAGGGCCAAGTACTTA
1 GAAAGAGGGCCAAGTACTTA
8435307 G
1 G
8435308 CTTTCTGTTT
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.37, C:0.17, G:0.32, T:0.15
Consensus pattern (20 bp):
GAAAGAGGGCCAAGTACTTA
Found at i:8435934 original size:2 final size:2
Alignment explanation
Indices: 8435922--8435955 Score: 59
Period size: 2 Copynumber: 17.0 Consensus size: 2
8435912 TTTCCTCCGA
*
8435922 AT AT AT GT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
8435956 TAGCTGTGCT
Statistics
Matches: 30, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
2 30 1.00
ACGTcount: A:0.47, C:0.00, G:0.03, T:0.50
Consensus pattern (2 bp):
AT
Found at i:8441895 original size:27 final size:27
Alignment explanation
Indices: 8441857--8441909 Score: 88
Period size: 27 Copynumber: 2.0 Consensus size: 27
8441847 ATGTGTGAAT
*
8441857 GAGAATGTAAAACAATTTCAGTTATAA
1 GAGAATGTAAAACAATTGCAGTTATAA
*
8441884 GAGAATGTAAAACCATTGCAGTTATA
1 GAGAATGTAAAACAATTGCAGTTATA
8441910 TAAACAAAAA
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
27 24 1.00
ACGTcount: A:0.45, C:0.09, G:0.17, T:0.28
Consensus pattern (27 bp):
GAGAATGTAAAACAATTGCAGTTATAA
Found at i:8457077 original size:28 final size:27
Alignment explanation
Indices: 8457023--8457077 Score: 76
Period size: 26 Copynumber: 2.0 Consensus size: 27
8457013 CTATTTAATT
8457023 TTAATATTTAAAAAATTAATAAATTAA
1 TTAATATTTAAAAAATTAATAAATTAA
*
8457050 TTAA-ATTTAAAAATTTTAGATAAATTAA
1 TTAATATTTAAAAA-ATTA-ATAAATTAA
8457078 ATTGTTTAAT
Statistics
Matches: 25, Mismatches: 1, Indels: 3
0.86 0.03 0.10
Matches are distributed among these distances:
26 9 0.36
27 7 0.28
28 9 0.36
ACGTcount: A:0.56, C:0.00, G:0.02, T:0.42
Consensus pattern (27 bp):
TTAATATTTAAAAAATTAATAAATTAA
Found at i:8457212 original size:35 final size:35
Alignment explanation
Indices: 8457147--8457213 Score: 93
Period size: 35 Copynumber: 1.9 Consensus size: 35
8457137 TAGTATATAA
*
8457147 ATTTTATTATATATTATATAATTTTAAATTAACGT
1 ATTTTATTATATATTATATAATTATAAATTAACGT
8457182 ATTTTAGTTATAT-TTATATAA-TATATAATTAA
1 ATTTTA-TTATATATTATATAATTATA-AATTAA
8457214 AAATAAAGTT
Statistics
Matches: 29, Mismatches: 1, Indels: 4
0.85 0.03 0.12
Matches are distributed among these distances:
34 3 0.10
35 20 0.69
36 6 0.21
ACGTcount: A:0.42, C:0.01, G:0.03, T:0.54
Consensus pattern (35 bp):
ATTTTATTATATATTATATAATTATAAATTAACGT
Found at i:8457307 original size:23 final size:20
Alignment explanation
Indices: 8457266--8457312 Score: 67
Period size: 23 Copynumber: 2.2 Consensus size: 20
8457256 TATTTTTTAA
8457266 AATTGATAATCAATTAAATT
1 AATTGATAATCAATTAAATT
8457286 AATTGAATAAATCAAATTAAATT
1 AATTG-AT-AATC-AATTAAATT
8457309 AATT
1 AATT
8457313 AATTAATTTT
Statistics
Matches: 24, Mismatches: 0, Indels: 3
0.89 0.00 0.11
Matches are distributed among these distances:
20 5 0.21
21 2 0.08
22 4 0.17
23 13 0.54
ACGTcount: A:0.53, C:0.04, G:0.04, T:0.38
Consensus pattern (20 bp):
AATTGATAATCAATTAAATT
Found at i:8458227 original size:2 final size:2
Alignment explanation
Indices: 8458220--8458244 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
8458210 ACTAAGTTGC
8458220 TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA T
8458245 GCAGCGAAGT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:8461897 original size:13 final size:13
Alignment explanation
Indices: 8461879--8461903 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
8461869 TTCTACATTC
8461879 AAAAAAAAAATTA
1 AAAAAAAAAATTA
8461892 AAAAAAAAAATT
1 AAAAAAAAAATT
8461904 TAACCCGATC
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.84, C:0.00, G:0.00, T:0.16
Consensus pattern (13 bp):
AAAAAAAAAATTA
Found at i:8464827 original size:3 final size:3
Alignment explanation
Indices: 8464819--8464855 Score: 74
Period size: 3 Copynumber: 12.3 Consensus size: 3
8464809 TGCCTGTTAC
8464819 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT T
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT T
8464856 GAGGTCAAGA
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 34 1.00
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (3 bp):
TAT
Found at i:8465578 original size:23 final size:23
Alignment explanation
Indices: 8465551--8465612 Score: 67
Period size: 23 Copynumber: 2.8 Consensus size: 23
8465541 ATTCATATAT
8465551 TTATATTATATTTATATACTTTA
1 TTATATTATATTTATATACTTTA
* *
8465574 TTATATTATA-AT-TAT-GTTTA
1 TTATATTATATTTATATACTTTA
*
8465594 TAATATTAATATTTATATA
1 TTATATT-ATATTTATATA
8465613 AATTTTAATA
Statistics
Matches: 31, Mismatches: 4, Indels: 7
0.74 0.10 0.17
Matches are distributed among these distances:
20 10 0.32
21 6 0.19
22 2 0.06
23 13 0.42
ACGTcount: A:0.39, C:0.02, G:0.02, T:0.58
Consensus pattern (23 bp):
TTATATTATATTTATATACTTTA
Done.