Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Scaffold1
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 8764944
ACGTcount: A:0.31, C:0.15, G:0.15, T:0.31
Warning! 632878 characters in sequence are not A, C, G, or T
File 7 of 52
Found at i:1085732 original size:12 final size:11
Alignment explanation
Indices: 1085706--1085772 Score: 57
Period size: 12 Copynumber: 5.9 Consensus size: 11
1085696 TCTATTATCT
*
1085706 CTCCTGTCTCTC
1 CTCCTATCTC-C
1085718 CTCCTATCATCC
1 CTCCTATC-TCC
1085730 CTCCTATCT--
1 CTCCTATCTCC
*
1085739 CTACTATCTCTC
1 CTCCTATCTC-C
1085751 CTCCTATCATCC
1 CTCCTATC-TCC
*
1085763 CTCCTCTCTC
1 CTCCTATCTC
1085773 TTCTTTCTCT
Statistics
Matches: 46, Mismatches: 4, Indels: 11
0.75 0.07 0.18
Matches are distributed among these distances:
9 8 0.17
11 3 0.07
12 31 0.67
13 4 0.09
ACGTcount: A:0.10, C:0.49, G:0.01, T:0.39
Consensus pattern (11 bp):
CTCCTATCTCC
Found at i:1085738 original size:33 final size:33
Alignment explanation
Indices: 1085701--1085782 Score: 119
Period size: 33 Copynumber: 2.5 Consensus size: 33
1085691 CTCTCTCTAT
* *
1085701 TATCTCTCCTGTCTCTCCTCCTATCATCCCTCC
1 TATCTCTACTATCTCTCCTCCTATCATCCCTCC
1085734 TATCTCTACTATCTCTCCTCCTATCATCCCTCC
1 TATCTCTACTATCTCTCCTCCTATCATCCCTCC
* * *
1085767 TCTCTCTTCTTTCTCT
1 TATCTCTACTATCTCT
1085783 TTGAGGGCTA
Statistics
Matches: 44, Mismatches: 5, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
33 44 1.00
ACGTcount: A:0.10, C:0.45, G:0.01, T:0.44
Consensus pattern (33 bp):
TATCTCTACTATCTCTCCTCCTATCATCCCTCC
Found at i:1087624 original size:251 final size:252
Alignment explanation
Indices: 1087146--1087653 Score: 867
Period size: 251 Copynumber: 2.0 Consensus size: 252
1087136 AAGCAAGTCA
*
1087146 CAACCAGCAGGCCCTTTATTACAAAATAACCCAAGTCCTAATTCAATCCATTGGAGCCCATATCT
1 CAACCAGCAGGCCCTTTATTACAAAAAAACCCAAGTCCTAATTCAATCCATTGGAGCCCATATCT
*
1087211 TCCAAATATATGCAATTAACTAGCTTGGGCTCTTCTAACTCCAAATTGGGTCTACTTTCAAATAG
66 TCCAAATATATGCAATTAACCAGCTTGGGCTCTTCTAACTCCAAATTGGGTCTACTTTCAAATAG
* *
1087276 GCCAGCAACCATCTTCTCTAGGTCTTCCTTTATCCTCTTTGCCTTTGCCCTCGTTATTGGACCTT
131 GCCAGCAACCATCTTCTCTAGGTCTTCCATTATCCTCTTTGCCTTTGCCCTCGTCATTGGACCTT
* * * *
1087341 GAAATCCTTCCAACGCCTTCAGGTCTTTGTCTTCAATGGACCTTCCTTGGTTTTCAT
196 GAAATCCTTCCAACGCCTTCAGGTCGTTGTCTTCAACGGACCATCCTTGGTTCTCAT
1087398 CAACCAGCAGGCCCTTTATTACAAAAAAACCCAAGTCCTAATTCAATCCATTGGAGCCCATATCT
1 CAACCAGCAGGCCCTTTATTACAAAAAAACCCAAGTCCTAATTCAATCCATTGGAGCCCATATCT
* * *
1087463 TCCAAATATATGCAATTGACCAGCTTGGGCTCTTCTAGCTCC-AATTGGGTTTACTTTCAAATAG
66 TCCAAATATATGCAATTAACCAGCTTGGGCTCTTCTAACTCCAAATTGGGTCTACTTTCAAATAG
* * *
1087527 GGCAGCAACCGTCTTCTCTAGGTCTTCCATTATCCTCTTTGCCTTTGCCCTCGTCATTGGTCCTT
131 GCCAGCAACCATCTTCTCTAGGTCTTCCATTATCCTCTTTGCCTTTGCCCTCGTCATTGGACCTT
1087592 GAAA-CCTTCCCAACGCCTTCAGGTCGTTGTCTTCAACGGACCATCCTTGGTTCTCAT
196 GAAATCCTT-CCAACGCCTTCAGGTCGTTGTCTTCAACGGACCATCCTTGGTTCTCAT
1087649 CAACC
1 CAACC
1087654 CTTCCTTCTT
Statistics
Matches: 241, Mismatches: 14, Indels: 3
0.93 0.05 0.01
Matches are distributed among these distances:
250 4 0.02
251 134 0.56
252 103 0.43
ACGTcount: A:0.24, C:0.30, G:0.14, T:0.32
Consensus pattern (252 bp):
CAACCAGCAGGCCCTTTATTACAAAAAAACCCAAGTCCTAATTCAATCCATTGGAGCCCATATCT
TCCAAATATATGCAATTAACCAGCTTGGGCTCTTCTAACTCCAAATTGGGTCTACTTTCAAATAG
GCCAGCAACCATCTTCTCTAGGTCTTCCATTATCCTCTTTGCCTTTGCCCTCGTCATTGGACCTT
GAAATCCTTCCAACGCCTTCAGGTCGTTGTCTTCAACGGACCATCCTTGGTTCTCAT
Found at i:1091968 original size:18 final size:19
Alignment explanation
Indices: 1091926--1092006 Score: 62
Period size: 18 Copynumber: 4.3 Consensus size: 19
1091916 TCCATCTTCT
*
1091926 TCTCTCCTC-CTCCT-GTCA
1 TCTCTCCTCTCTCCTCCT-A
* *
1091944 TCCCTCCTCTCT-CTGCTA
1 TCTCTCCTCTCTCCTCCTA
1091962 TCTCTCCTATCTCTCCTCCTA
1 TCTCTCC--TCTCTCCTCCTA
* *
1091983 TCTCTACTATCT-CTCCTA
1 TCTCTCCTCTCTCCTCCTA
1092001 TCTCTC
1 TCTCTC
1092007 TTTCTATCAT
Statistics
Matches: 51, Mismatches: 7, Indels: 10
0.75 0.10 0.15
Matches are distributed among these distances:
18 28 0.55
19 7 0.14
20 5 0.10
21 11 0.22
ACGTcount: A:0.09, C:0.47, G:0.02, T:0.42
Consensus pattern (19 bp):
TCTCTCCTCTCTCCTCCTA
Found at i:1091971 original size:9 final size:9
Alignment explanation
Indices: 1091947--1092006 Score: 66
Period size: 9 Copynumber: 6.3 Consensus size: 9
1091937 CCTGTCATCC
*
1091947 CTCCTCTCT
1 CTCCTATCT
*
1091956 CTGCTATCT
1 CTCCTATCT
1091965 CTCCTATCTCT
1 CTCCTA--TCT
1091976 CCTCCTATCT
1 -CTCCTATCT
*
1091986 CTACTATCT
1 CTCCTATCT
1091995 CTCCTATCT
1 CTCCTATCT
1092004 CTC
1 CTC
1092007 TTTCTATCAT
Statistics
Matches: 43, Mismatches: 5, Indels: 6
0.80 0.09 0.11
Matches are distributed among these distances:
9 31 0.72
10 3 0.07
11 3 0.07
12 6 0.14
ACGTcount: A:0.10, C:0.45, G:0.02, T:0.43
Consensus pattern (9 bp):
CTCCTATCT
Found at i:1091985 original size:21 final size:21
Alignment explanation
Indices: 1091950--1092038 Score: 83
Period size: 21 Copynumber: 4.2 Consensus size: 21
1091940 GTCATCCCTC
* *
1091950 CTCTCTCTGCTATCTCTCCTAT
1 CTCTC-CTCCTATCTCTTCTAT
*
1091972 CTCTCCTCCTATCTCTACTAT
1 CTCTCCTCCTATCTCTTCTAT
* *
1091993 CTCTCCT-ATCTCTCTTTCTAT
1 CTCTCCTCCTATCTC-TTCTAT
*
1092014 CATC-CCTCCTATCTCTTCTTT
1 C-TCTCCTCCTATCTCTTCTAT
1092035 CTCT
1 CTCT
1092039 TTGAGGGCTA
Statistics
Matches: 55, Mismatches: 8, Indels: 9
0.76 0.11 0.12
Matches are distributed among these distances:
20 7 0.13
21 36 0.65
22 12 0.22
ACGTcount: A:0.10, C:0.42, G:0.01, T:0.47
Consensus pattern (21 bp):
CTCTCCTCCTATCTCTTCTAT
Found at i:1092014 original size:30 final size:30
Alignment explanation
Indices: 1091946--1092006 Score: 104
Period size: 30 Copynumber: 2.0 Consensus size: 30
1091936 TCCTGTCATC
* *
1091946 CCTCCTCTCTCTGCTATCTCTCCTATCTCT
1 CCTCCTATCTCTACTATCTCTCCTATCTCT
1091976 CCTCCTATCTCTACTATCTCTCCTATCTCT
1 CCTCCTATCTCTACTATCTCTCCTATCTCT
1092006 C
1 C
1092007 TTTCTATCAT
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
30 29 1.00
ACGTcount: A:0.10, C:0.46, G:0.02, T:0.43
Consensus pattern (30 bp):
CCTCCTATCTCTACTATCTCTCCTATCTCT
Found at i:1097641 original size:9 final size:9
Alignment explanation
Indices: 1097629--1097689 Score: 65
Period size: 9 Copynumber: 7.1 Consensus size: 9
1097619 CTCTCTCTAT
1097629 TATCTCTCC
1 TATCTCTCC
1097638 TATCTCTCC
1 TATCTCTCC
* *
1097647 T-CCTAT-C
1 TATCTCTCC
*
1097654 -ATCCCTCC
1 TATCTCTCC
*
1097662 TATCTCTAC
1 TATCTCTCC
1097671 TATCTCTCC
1 TATCTCTCC
1097680 TATCTCTCC
1 TATCTCTCC
1097689 T
1 T
1097690 CCTATCATCC
Statistics
Matches: 41, Mismatches: 8, Indels: 6
0.75 0.15 0.11
Matches are distributed among these distances:
7 3 0.07
8 4 0.10
9 34 0.83
ACGTcount: A:0.13, C:0.44, G:0.00, T:0.43
Consensus pattern (9 bp):
TATCTCTCC
Found at i:1097649 original size:12 final size:12
Alignment explanation
Indices: 1097634--1097695 Score: 57
Period size: 12 Copynumber: 5.7 Consensus size: 12
1097624 TCTATTATCT
1097634 CTCCTATCTCTC
1 CTCCTATCTCTC
1097646 CTCCTATCATC-C
1 CTCCTATC-TCTC
1097658 CTCCTA--TCT-
1 CTCCTATCTCTC
*
1097667 CTACTA--TCT-
1 CTCCTATCTCTC
1097676 CTCCTATCTCTC
1 CTCCTATCTCTC
1097688 CTCCTATC
1 CTCCTATC
1097696 ATCCATCCTC
Statistics
Matches: 43, Mismatches: 2, Indels: 10
0.78 0.04 0.18
Matches are distributed among these distances:
9 15 0.35
11 3 0.07
12 23 0.53
13 2 0.05
ACGTcount: A:0.13, C:0.47, G:0.00, T:0.40
Consensus pattern (12 bp):
CTCCTATCTCTC
Found at i:1097653 original size:42 final size:42
Alignment explanation
Indices: 1097601--1097719 Score: 193
Period size: 42 Copynumber: 2.8 Consensus size: 42
1097591 TTCTTCTCTC
*
1097601 CTCCTCCTATCATCCCTCCTCTCTCTATTATCTCTCCTATCT
1 CTCCTCCTATCATCCCTCCTCTCTCTACTATCTCTCCTATCT
*
1097643 CTCCTCCTATCATCCCTCCTATCTCTACTATCTCTCCTATCT
1 CTCCTCCTATCATCCCTCCTCTCTCTACTATCTCTCCTATCT
* * *
1097685 CTCCTCCTATCATCCATCCTCTCTCTTCTTTCTCT
1 CTCCTCCTATCATCCCTCCTCTCTCTACTATCTCT
1097720 TTGAAGGCTA
Statistics
Matches: 71, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
42 71 1.00
ACGTcount: A:0.12, C:0.45, G:0.00, T:0.43
Consensus pattern (42 bp):
CTCCTCCTATCATCCCTCCTCTCTCTACTATCTCTCCTATCT
Found at i:1100108 original size:859 final size:853
Alignment explanation
Indices: 1098442--1100146 Score: 2952
Period size: 859 Copynumber: 2.0 Consensus size: 853
1098432 TATTCTTTCT
1098442 TTTTTTTTTTGTATTCTTGAAAAAAAAATAACAGCAACAAGATCAAATGAGTTCAAGATTCAAAA
1 TTTTTTTTTTGTATTCTTGAAAAAAAAATAACAGCAACAAGATCAAATGAGTTCAAGATTCAAAA
*
1098507 CTAACAGAAATAGTAGGATGAACAGTAAACACGAACCTGATAGTGATAATGAATTTAATCCAACT
66 CTAACAGAAACAGTAGGATGAACAGTAAACACGAACCTGATAGTGATAATGAATTTAATCCAACT
1098572 CCAAACCAAAGCTCTAATACCAATTGATGACAACCATGAACCAAGGTTGCCTAAATAATGATCTT
131 CCAAACCAAAGCTCTAATACCAATTGATGACAACCATGAACCAAGGTTGCCTAAATAATGATCTT
* *
1098637 GAGATGGAATTCTAACAATAAACTTATTGATGCAAGAACAGAAATTGAAAGAAGCAGAAAAAAAT
196 GAGATGGAATTCTAACAATAAACTTATTAATGCAAGAACAAAAATTGAAAGAAGCAGAAAAAAAT
1098702 AACAAAATGGAATAGATTAGAGATGAAGGATGGCGCCACAATCACAAGATTGATAAGCCAAAAGG
261 AACAAAATGGAATAGATTAGAGATGAAGGATGGCGCCACAATCACAAGATTGATAAGCCAAAAGG
1098767 AATGATCGCCACAAGAGTCTTGGCCTCTTGATAAGATCCAGAAAAATTGGCTCACTCAAGAACCT
326 AATGATCGCCACAAGAGTCTTGGCCTCTTGATAAGATCCAGAAAAATTGGCTCACTCAAGAACCT
1098832 AAGAATCACTCTCACACAAAATGTGTTTAATCTGCAAATATCAATGTCTGCCCCCTCCAAATATG
391 AAGAATCACTCTCACACAAAATGTGTTTAATCTGCAAATATCAATGTCTGCCCCCTCCAAATATG
1098897 TTTACAAGAGCTTATATATGCCCTCATAAGCCATAGTTAACACAAGCCCTAAGGGGCTTATTATG
456 TTTACAAGAGCTTATATATGCCCTCATAAGCCATAGTTAACACAAGCCCTAAGGGGCTTATTATG
1098962 CTAACAAGCCCAACTCTTACTTAAACCCAAATAACAAGATTTTTTATGCTAAATAAAGCCCAAAG
521 CTAACAAGCCCAACTCTTACTTAAACCCAAATAACAAGATTTTTTATGCTAAATAAAGCCCAAAG
*
1099027 CAAGTCACAACCAGCAGGCCCTTTATTACAAAATAACCCAAGTCCTAATACAATCCATTGGAGCC
586 CAAGCCACAACCAGCAGGCCCTTTATTACAAAATAACCCAAGTCCTAATACAATCCATTGGAGCC
* *
1099092 CATATCTTCCAAATATATGCAATTAACTAGCTTGGGCTCTTCTAACTCCAAATTGGGTCTACTTT
651 CATATCTTCCAAATATATACAATTAACCAGCTTGGGCTCTTCTAACTCCAAATTGGGTCTACTTT
* *
1099157 CAAATAGGCCAGCAACCATCTTCTCTAGGTCTTCCTTTATCCTCTTCGCCTTTGCCCTCGTTATT
716 CAAATAGGCCAGCAACCATCTTCTCTAAGTCTTCCTTTATCCTCTTCGCCTTTGCCCTCGTCATT
* *
1099222 GGTCCTTGAAATCCTTCCAACGCCTTCAGGTCT-TTGTCTTCAATGGGCCTTCCTTGGTTTTCAT
781 GGTCCTTGAAATCCTTCCAACGCCTTCAGGT-TGTTGTCTTCAATGGACCTTCCTTGGTTCTCAT
1099286 CATTTTGTA
845 CATTTTGTA
** * *
1099295 TTTTTTTTTTGTATTCTTG-AAAAAATCTAACAGCAACAAGATCCAATGAGTTCAAGATTCAGAA
1 TTTTTTTTTTGTATTCTTGAAAAAAAAATAACAGCAACAAGATCAAATGAGTTCAAGATTCAAAA
* **
1099359 CTAACAGCAACAGTTTGATGAACAGTAAACACGAACCTGATAGTGATAATGAATTTAATCCAACT
66 CTAACAGAAACAGTAGGATGAACAGTAAACACGAACCTGATAGTGATAATGAATTTAATCCAACT
* *
1099424 CCAAACCAAAGCTCTGATACCAATTGATGACAACCATGATCCAAGGTTGCCTAAATAATGATCTT
131 CCAAACCAAAGCTCTAATACCAATTGATGACAACCATGAACCAAGGTTGCCTAAATAATGATCTT
*
1099489 GAGATGGATTTCTAACAATAAACAGAATTATTAATGCAAGAACAAAAATTGAAAAGAAGCAG-AA
196 GAGATGGAATTCTAACAATAAAC----TTATTAATGCAAGAACAAAAATTG-AAAGAAGCAGAAA
1099553 AAAATAACAAAACTGGAATAGATTAGAGATGAA-GATGGCGCCACAATCACAAGATTGATAAGCC
256 AAAATAACAAAA-TGGAATAGATTAGAGATGAAGGATGGCGCCACAATCACAAGATTGATAAGCC
1099617 AAAAGGAATGATCGCCACAAGAGTCTTGGCCTCTTGATAAGATCCAGAAAAATTGGCTCACTCAA
320 AAAAGGAATGATCGCCACAAGAGTCTTGGCCTCTTGATAAGATCCAGAAAAATTGGCTCACTCAA
*
1099682 GAACCTAAGAATCACACTCTCACACAAAATGTGTTTAATTTGCAAATATCAATGTCTGCCCCCTT
385 GAACCTAAGAAT--CACTCTCACACAAAATGTGTTTAATCTGCAAATATCAATGTCTGCCCCC-T
* * * *
1099747 CTAAATCTGTTTACAAGAGTTTATATATGCCTTCATAAGCCATAGTTAACACAAGCCCTAAGGGG
447 CCAAATATGTTTACAAGAGCTTATATATGCCCTCATAAGCCATAGTTAACACAAGCCCTAAGGGG
* *
1099812 CTTATTGTGCTAACAAGCCCAACTCTTAGTTAAACCCAAATAACAAGATTTTTTATGCTAAATAA
512 CTTATTATGCTAACAAGCCCAACTCTTACTTAAACCCAAATAACAAGATTTTTTATGCTAAATAA
* * * *
1099877 AGCCCAAAGTAGGCCACAACCAGCAGGCCCTTTATTACAAAATAACCCAATTCCTAATTCAATCC
577 AGCCCAAAGCAAGCCACAACCAGCAGGCCCTTTATTACAAAATAACCCAAGTCCTAATACAATCC
*
1099942 ATTGGAGCCCATATCTTCCAAATATATACAATTGACCAGCTTGGGCTCTTCTAACTCCAAATTGG
642 ATTGGAGCCCATATCTTCCAAATATATACAATTAACCAGCTTGGGCTCTTCTAACTCCAAATTGG
* *
1100007 GTCTACTTTCAAATAGGGCAGCAACCATCTTCTCTAAGTCTTCCTTTATCCTCTTTGCCTTTGCC
707 GTCTACTTTCAAATAGGCCAGCAACCATCTTCTCTAAGTCTTCCTTTATCCTCTTCGCCTTTGCC
* *
1100072 CTCGTCATTGGTCCTTGAAA-CCTTCCCAATGCCTTCAGGTTGTTGTCTTCAGTGGACCTTCCTT
772 CTCGTCATTGGTCCTTGAAATCCTT-CCAACGCCTTCAGGTTGTTGTCTTCAATGGACCTTCCTT
1100136 GGTTCTCATCA
836 GGTTCTCATCA
1100147 GTAGTAGAAT
Statistics
Matches: 805, Mismatches: 36, Indels: 16
0.94 0.04 0.02
Matches are distributed among these distances:
852 187 0.23
853 19 0.02
856 144 0.18
857 30 0.04
858 53 0.07
859 372 0.46
ACGTcount: A:0.35, C:0.22, G:0.15, T:0.28
Consensus pattern (853 bp):
TTTTTTTTTTGTATTCTTGAAAAAAAAATAACAGCAACAAGATCAAATGAGTTCAAGATTCAAAA
CTAACAGAAACAGTAGGATGAACAGTAAACACGAACCTGATAGTGATAATGAATTTAATCCAACT
CCAAACCAAAGCTCTAATACCAATTGATGACAACCATGAACCAAGGTTGCCTAAATAATGATCTT
GAGATGGAATTCTAACAATAAACTTATTAATGCAAGAACAAAAATTGAAAGAAGCAGAAAAAAAT
AACAAAATGGAATAGATTAGAGATGAAGGATGGCGCCACAATCACAAGATTGATAAGCCAAAAGG
AATGATCGCCACAAGAGTCTTGGCCTCTTGATAAGATCCAGAAAAATTGGCTCACTCAAGAACCT
AAGAATCACTCTCACACAAAATGTGTTTAATCTGCAAATATCAATGTCTGCCCCCTCCAAATATG
TTTACAAGAGCTTATATATGCCCTCATAAGCCATAGTTAACACAAGCCCTAAGGGGCTTATTATG
CTAACAAGCCCAACTCTTACTTAAACCCAAATAACAAGATTTTTTATGCTAAATAAAGCCCAAAG
CAAGCCACAACCAGCAGGCCCTTTATTACAAAATAACCCAAGTCCTAATACAATCCATTGGAGCC
CATATCTTCCAAATATATACAATTAACCAGCTTGGGCTCTTCTAACTCCAAATTGGGTCTACTTT
CAAATAGGCCAGCAACCATCTTCTCTAAGTCTTCCTTTATCCTCTTCGCCTTTGCCCTCGTCATT
GGTCCTTGAAATCCTTCCAACGCCTTCAGGTTGTTGTCTTCAATGGACCTTCCTTGGTTCTCATC
ATTTTGTA
Found at i:1104358 original size:28 final size:29
Alignment explanation
Indices: 1104327--1104389 Score: 94
Period size: 28 Copynumber: 2.2 Consensus size: 29
1104317 CAAGGAAGTA
*
1104327 AAATCAA-CAAGAAATATGAAAGGAAAAG
1 AAATCAAGCAAGAAATATCAAAGGAAAAG
*
1104355 AAAT-AAGCAAGAAATTTCAAAGGAAAAG
1 AAATCAAGCAAGAAATATCAAAGGAAAAG
1104383 AAATCAA
1 AAATCAA
1104390 TAAAGAAGAA
Statistics
Matches: 31, Mismatches: 2, Indels: 3
0.86 0.06 0.08
Matches are distributed among these distances:
27 2 0.06
28 27 0.87
29 2 0.06
ACGTcount: A:0.63, C:0.08, G:0.16, T:0.13
Consensus pattern (29 bp):
AAATCAAGCAAGAAATATCAAAGGAAAAG
Found at i:1104462 original size:11 final size:11
Alignment explanation
Indices: 1104446--1104475 Score: 51
Period size: 11 Copynumber: 2.6 Consensus size: 11
1104436 AATAACTATC
1104446 TTTTTTTCTTT
1 TTTTTTTCTTT
1104457 TTTTTTTCTTT
1 TTTTTTTCTTT
1104468 TTTCTTTT
1 TTT-TTTT
1104476 GAAGATGGAA
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
11 14 0.78
12 4 0.22
ACGTcount: A:0.00, C:0.10, G:0.00, T:0.90
Consensus pattern (11 bp):
TTTTTTTCTTT
Found at i:1105257 original size:58 final size:58
Alignment explanation
Indices: 1105154--1105264 Score: 168
Period size: 58 Copynumber: 1.9 Consensus size: 58
1105144 AACAATAGGC
* * *
1105154 CCATAAATATATGCAAATTGGGCTCCACTCTTCTCGGACATGTGAATTGGGCTTCAAG
1 CCATAAATACATGCAAATTGGGCTCCACTCTTCTCGGAAAAGTGAATTGGGCTTCAAG
* * *
1105212 CCATGAATACATGCAAATTGGGCTTCACTCTTCTTGGAAAAGTGAATTGGGCT
1 CCATAAATACATGCAAATTGGGCTCCACTCTTCTCGGAAAAGTGAATTGGGCT
1105265 CTGATGACAA
Statistics
Matches: 47, Mismatches: 6, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
58 47 1.00
ACGTcount: A:0.28, C:0.21, G:0.22, T:0.30
Consensus pattern (58 bp):
CCATAAATACATGCAAATTGGGCTCCACTCTTCTCGGAAAAGTGAATTGGGCTTCAAG
Found at i:1109506 original size:12 final size:11
Alignment explanation
Indices: 1109484--1109559 Score: 52
Period size: 12 Copynumber: 6.9 Consensus size: 11
1109474 AGAGAAAGAA
*
1109484 GAGAGAGGAGG
1 GAGATAGGAGG
1109495 GATGATAGGAGG
1 GA-GATAGGAGG
*
1109507 AGAGACAGGA--
1 -GAGATAGGAGG
*
1109517 GAGATAGTA--
1 GAGATAGGAGG
1109526 GAGATAGGAGG
1 GAGATAGGAGG
1109537 GATGATAGGAGG
1 GA-GATAGGAGG
*
1109549 AGAGACAGGAG
1 -GAGATAGGAG
1109560 AGATAATAGA
Statistics
Matches: 53, Mismatches: 6, Indels: 11
0.76 0.09 0.16
Matches are distributed among these distances:
9 15 0.28
11 4 0.08
12 30 0.57
13 4 0.08
ACGTcount: A:0.39, C:0.03, G:0.49, T:0.09
Consensus pattern (11 bp):
GAGATAGGAGG
Found at i:1109516 original size:24 final size:24
Alignment explanation
Indices: 1109483--1109568 Score: 85
Period size: 24 Copynumber: 3.8 Consensus size: 24
1109473 AAGAGAAAGA
*
1109483 AGAGAGAGGAGGGATGATAGGAGG
1 AGAGACAGGAGGGATGATAGGAGG
*
1109507 AGAGACAGGA--GA-GAT---AGT
1 AGAGACAGGAGGGATGATAGGAGG
*
1109525 AGAGATAGGAGGGATGATAGGAGG
1 AGAGACAGGAGGGATGATAGGAGG
* *
1109549 AGAGACAGGAGAGATAATAG
1 AGAGACAGGAGGGATGATAG
1109569 AGAGAGGAGG
Statistics
Matches: 49, Mismatches: 7, Indels: 12
0.72 0.10 0.18
Matches are distributed among these distances:
18 11 0.22
20 2 0.04
21 6 0.12
22 2 0.04
24 28 0.57
ACGTcount: A:0.42, C:0.02, G:0.45, T:0.10
Consensus pattern (24 bp):
AGAGACAGGAGGGATGATAGGAGG
Found at i:1109535 original size:42 final size:42
Alignment explanation
Indices: 1109474--1109592 Score: 193
Period size: 42 Copynumber: 2.8 Consensus size: 42
1109464 TAGCCCTCAA
* *
1109474 AGAGAAAGAAGAGAGAGGAGGGATGATAGGAGGAGAGACAGG
1 AGAGATAGTAGAGAGAGGAGGGATGATAGGAGGAGAGACAGG
*
1109516 AGAGATAGTAGAGATAGGAGGGATGATAGGAGGAGAGACAGG
1 AGAGATAGTAGAGAGAGGAGGGATGATAGGAGGAGAGACAGG
* *
1109558 AGAGATAATAGAGAGAGGAGGGATGACAGGAGGAG
1 AGAGATAGTAGAGAGAGGAGGGATGATAGGAGGAG
1109593 GAGAGAAGAA
Statistics
Matches: 71, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
42 71 1.00
ACGTcount: A:0.43, C:0.03, G:0.46, T:0.08
Consensus pattern (42 bp):
AGAGATAGTAGAGAGAGGAGGGATGATAGGAGGAGAGACAGG
Found at i:1117524 original size:12 final size:11
Alignment explanation
Indices: 1117502--1117577 Score: 52
Period size: 12 Copynumber: 6.9 Consensus size: 11
1117492 AGAGAAAGAA
*
1117502 GAGAGAGGAGG
1 GAGATAGGAGG
1117513 GATGATAGGAGG
1 GA-GATAGGAGG
*
1117525 AGAGACAGGA--
1 -GAGATAGGAGG
*
1117535 GAGATAGTA--
1 GAGATAGGAGG
1117544 GAGATAGGAGG
1 GAGATAGGAGG
1117555 GATGATAGGAGG
1 GA-GATAGGAGG
*
1117567 AGAGACAGGAG
1 -GAGATAGGAG
1117578 AGATAATAGA
Statistics
Matches: 53, Mismatches: 6, Indels: 11
0.76 0.09 0.16
Matches are distributed among these distances:
9 15 0.28
11 4 0.08
12 30 0.57
13 4 0.08
ACGTcount: A:0.39, C:0.03, G:0.49, T:0.09
Consensus pattern (11 bp):
GAGATAGGAGG
Found at i:1117534 original size:24 final size:24
Alignment explanation
Indices: 1117501--1117586 Score: 85
Period size: 24 Copynumber: 3.8 Consensus size: 24
1117491 AAGAGAAAGA
*
1117501 AGAGAGAGGAGGGATGATAGGAGG
1 AGAGACAGGAGGGATGATAGGAGG
*
1117525 AGAGACAGGA--GA-GAT---AGT
1 AGAGACAGGAGGGATGATAGGAGG
*
1117543 AGAGATAGGAGGGATGATAGGAGG
1 AGAGACAGGAGGGATGATAGGAGG
* *
1117567 AGAGACAGGAGAGATAATAG
1 AGAGACAGGAGGGATGATAG
1117587 AGAGAGGAGG
Statistics
Matches: 49, Mismatches: 7, Indels: 12
0.72 0.10 0.18
Matches are distributed among these distances:
18 11 0.22
20 2 0.04
21 6 0.12
22 2 0.04
24 28 0.57
ACGTcount: A:0.42, C:0.02, G:0.45, T:0.10
Consensus pattern (24 bp):
AGAGACAGGAGGGATGATAGGAGG
Found at i:1117553 original size:42 final size:42
Alignment explanation
Indices: 1117492--1117610 Score: 193
Period size: 42 Copynumber: 2.8 Consensus size: 42
1117482 TAGCCCTCAA
* *
1117492 AGAGAAAGAAGAGAGAGGAGGGATGATAGGAGGAGAGACAGG
1 AGAGATAGTAGAGAGAGGAGGGATGATAGGAGGAGAGACAGG
*
1117534 AGAGATAGTAGAGATAGGAGGGATGATAGGAGGAGAGACAGG
1 AGAGATAGTAGAGAGAGGAGGGATGATAGGAGGAGAGACAGG
* *
1117576 AGAGATAATAGAGAGAGGAGGGATGACAGGAGGAG
1 AGAGATAGTAGAGAGAGGAGGGATGATAGGAGGAG
1117611 GAGAGAAGAA
Statistics
Matches: 71, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
42 71 1.00
ACGTcount: A:0.43, C:0.03, G:0.46, T:0.08
Consensus pattern (42 bp):
AGAGATAGTAGAGAGAGGAGGGATGATAGGAGGAGAGACAGG
Found at i:1123295 original size:9 final size:9
Alignment explanation
Indices: 1123283--1123364 Score: 68
Period size: 9 Copynumber: 9.8 Consensus size: 9
1123273 CTCTCTCGAT
1123283 TATCTCTCC
1 TATCTCTCC
1123292 TATCTCTCC
1 TATCTCTCC
* *
1123301 T-CCTAT-C
1 TATCTCTCC
*
1123308 -ATCCCTCC
1 TATCTCTCC
*
1123316 TATCTCTAC
1 TATCTCTCC
1123325 TATCTCTCC
1 TATCTCTCC
1123334 TATCTCTCC
1 TATCTCTCC
*
1123343 T-TCTAT-C
1 TATCTCTCC
*
1123350 -ATCCCTCC
1 TATCTCTCC
1123358 TATCTCT
1 TATCTCT
1123365 TCTTTCTCTT
Statistics
Matches: 55, Mismatches: 12, Indels: 12
0.70 0.15 0.15
Matches are distributed among these distances:
7 7 0.13
8 9 0.16
9 39 0.71
ACGTcount: A:0.13, C:0.44, G:0.00, T:0.43
Consensus pattern (9 bp):
TATCTCTCC
Found at i:1123317 original size:24 final size:24
Alignment explanation
Indices: 1123288--1123364 Score: 94
Period size: 24 Copynumber: 3.5 Consensus size: 24
1123278 TCGATTATCT
*
1123288 CTCCTATCTCTCCTCCTATCATCC
1 CTCCTATCTCTCCTACTATCATCC
1123312 CTCCTA--TCT-CTACTATC-T--
1 CTCCTATCTCTCCTACTATCATCC
*
1123330 CTCCTATCTCTCCTTCTATCATCC
1 CTCCTATCTCTCCTACTATCATCC
1123354 CTCCTATCTCT
1 CTCCTATCTCT
1123365 TCTTTCTCTT
Statistics
Matches: 45, Mismatches: 2, Indels: 12
0.76 0.03 0.20
Matches are distributed among these distances:
18 6 0.13
20 4 0.09
21 14 0.31
22 4 0.09
24 17 0.38
ACGTcount: A:0.13, C:0.45, G:0.00, T:0.42
Consensus pattern (24 bp):
CTCCTATCTCTCCTACTATCATCC
Found at i:1123364 original size:42 final size:42
Alignment explanation
Indices: 1123255--1123373 Score: 175
Period size: 42 Copynumber: 2.8 Consensus size: 42
1123245 TTCTTCTCTC
* * * *
1123255 CTCCTCCTGTCATCCCTCCTCTCTCGATTATCTCTCCTATCT
1 CTCCTCCTATCATCCCTCCTATCTCTACTATCTCTCCTATCT
1123297 CTCCTCCTATCATCCCTCCTATCTCTACTATCTCTCCTATCT
1 CTCCTCCTATCATCCCTCCTATCTCTACTATCTCTCCTATCT
* * *
1123339 CTCCTTCTATCATCCCTCCTATCTCTTCTTTCTCT
1 CTCCTCCTATCATCCCTCCTATCTCTACTATCTCT
1123374 TTGAGGGCTA
Statistics
Matches: 70, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
42 70 1.00
ACGTcount: A:0.11, C:0.45, G:0.02, T:0.43
Consensus pattern (42 bp):
CTCCTCCTATCATCCCTCCTATCTCTACTATCTCTCCTATCT
Found at i:1130259 original size:42 final size:42
Alignment explanation
Indices: 1130204--1130310 Score: 187
Period size: 42 Copynumber: 2.5 Consensus size: 42
1130194 TTCTTCTCTC
* *
1130204 CTCCTCCTGTCATCCCTCCTCTCTCTATTATCTCTCCTGTCT
1 CTCCTCCTATCATCCCTCCTCTCTCTACTATCTCTCCTGTCT
*
1130246 CTCCTCCTATCATCCCTCCTATCTCTACTATCTCTCCTGTCT
1 CTCCTCCTATCATCCCTCCTCTCTCTACTATCTCTCCTGTCT
1130288 CTCCTCCTATCATCCCTCCTCTC
1 CTCCTCCTATCATCCCTCCTCTC
1130311 AATTCTTTCT
Statistics
Matches: 61, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
42 61 1.00
ACGTcount: A:0.09, C:0.48, G:0.03, T:0.40
Consensus pattern (42 bp):
CTCCTCCTATCATCCCTCCTCTCTCTACTATCTCTCCTGTCT
Found at i:1130263 original size:12 final size:11
Alignment explanation
Indices: 1130237--1130307 Score: 51
Period size: 12 Copynumber: 6.5 Consensus size: 11
1130227 TCTATTATCT
*
1130237 CTCCTGTCTCTC
1 CTCCTATCTC-C
1130249 CTCCTATCATCC
1 CTCCTATC-TCC
1130261 CTCCTATCT--
1 CTCCTATCTCC
*
1130270 CTACTATCT--
1 CTCCTATCTCC
*
1130279 CTCCTGTCTCTC
1 CTCCTATCTC-C
1130291 CTCCTATCATCC
1 CTCCTATC-TCC
1130303 CTCCT
1 CTCCT
1130308 CTCAATTCTT
Statistics
Matches: 49, Mismatches: 5, Indels: 10
0.77 0.08 0.16
Matches are distributed among these distances:
9 15 0.31
11 1 0.02
12 29 0.59
13 4 0.08
ACGTcount: A:0.10, C:0.48, G:0.03, T:0.39
Consensus pattern (11 bp):
CTCCTATCTCC
Found at i:1130288 original size:18 final size:18
Alignment explanation
Indices: 1130219--1130289 Score: 52
Period size: 18 Copynumber: 3.6 Consensus size: 18
1130209 CCTGTCATCC
* *
1130219 CTCCTCTCTCTATTATCT
1 CTCCTGTCTCTACTATCT
*
1130237 CTCCTGTCTCTCCTCCTATCAT
1 CTCCTG--TCT-CTACTATC-T
*
1130259 CCCTCCTATCTCTACTATCT
1 --CTCCTGTCTCTACTATCT
1130279 CTCCTGTCTCT
1 CTCCTGTCTCT
1130290 CCTCCTATCA
Statistics
Matches: 41, Mismatches: 6, Indels: 12
0.69 0.10 0.20
Matches are distributed among these distances:
18 15 0.37
20 4 0.10
21 13 0.32
22 4 0.10
24 5 0.12
ACGTcount: A:0.10, C:0.44, G:0.03, T:0.44
Consensus pattern (18 bp):
CTCCTGTCTCTACTATCT
Found at i:1130322 original size:42 final size:40
Alignment explanation
Indices: 1130204--1130322 Score: 148
Period size: 42 Copynumber: 2.8 Consensus size: 40
1130194 TTCTTCTCTC
* *
1130204 CTCCTCCTGTCATCCCTCCTCTCTCTATTATCTCTCCTGTCT
1 CTCCTCCTATCATCCCTCCTCTCT-TCTT-TCTCTCCTGTCT
* *
1130246 CTCCTCCTATCATCCCTCCTATCTCTACTATCTCTCCTGTCT
1 CTCCTCCTATCATCCCTCC--TCTCTTCTTTCTCTCCTGTCT
1130288 CTCCTCCTATCATCCCTCCTCTCAATTCTTTCTCT
1 CTCCTCCTATCATCCCTCCTCTC--TTCTTTCTCT
1130323 TTGAGGGCTA
Statistics
Matches: 67, Mismatches: 6, Indels: 8
0.83 0.07 0.10
Matches are distributed among these distances:
40 4 0.06
42 57 0.85
43 1 0.01
44 5 0.07
ACGTcount: A:0.10, C:0.45, G:0.03, T:0.42
Consensus pattern (40 bp):
CTCCTCCTATCATCCCTCCTCTCTTCTTTCTCTCCTGTCT
Found at i:1133833 original size:151 final size:155
Alignment explanation
Indices: 1133628--1133919 Score: 353
Period size: 151 Copynumber: 1.9 Consensus size: 155
1133618 TCCAAATGAA
* * * *
1133628 GAGAATGTGTTTTTGTGGCCCAATCACCAAAACCATTGAGATTATTACGAGAATCCATGTTTGTA
1 GAGAATGTGATATTGTGGCCCAATCA-CAAAACAATTGAGATTATTAAGAGAATCCATGTTTGTA
* * *
1133693 TCATTTGTTGG-ACAAACTTTGATTCTAAGGAAAATAGT-GAAAAAA-GTTTTTATTGCGAAATC
65 TCATTTG-AGGAACAAACTTTGATTCTAAGGAAAATAGTGGAAAAAAGGCTTTTATTGCGAAAGC
*
1133755 AAAGTATCAATATCATTTATCATCACG
129 AAAGCATCAATATCATTTATCATCACG
* * * *
1133782 GAGAATGTGATATTGTTGCCCAATCA-AAAA-AATTGAGATTGTTATAG-GAATCTATGTTTGTC
1 GAGAATGTGATATTGTGGCCCAATCACAAAACAATTGAGATTATTA-AGAGAATCCATGTTTGTA
* * * * *
1133844 TTATTTGAGGAACGAACTTTGATTCTAATGAAAATGGTGGGAAAAAAGGCTTTTGTTGCGAAAGC
65 TCATTTGAGGAACAAACTTTGATTCTAAGGAAAATAGT-GGAAAAAAGGCTTTTATTGCGAAAGC
1133909 AAAGCATCAAT
129 AAAGCATCAAT
1133920 TACATGTAAG
Statistics
Matches: 116, Mismatches: 17, Indels: 10
0.81 0.12 0.07
Matches are distributed among these distances:
150 2 0.02
151 55 0.47
152 5 0.04
153 7 0.06
154 47 0.41
ACGTcount: A:0.35, C:0.12, G:0.20, T:0.33
Consensus pattern (155 bp):
GAGAATGTGATATTGTGGCCCAATCACAAAACAATTGAGATTATTAAGAGAATCCATGTTTGTAT
CATTTGAGGAACAAACTTTGATTCTAAGGAAAATAGTGGAAAAAAGGCTTTTATTGCGAAAGCAA
AGCATCAATATCATTTATCATCACG
Found at i:1135166 original size:47 final size:47
Alignment explanation
Indices: 1135107--1135199 Score: 177
Period size: 47 Copynumber: 2.0 Consensus size: 47
1135097 ACATAAAGAC
*
1135107 GATGACAGCCATGAACCAAGGTTGCCTAAATAATGATCTTGAGATGT
1 GATGACAACCATGAACCAAGGTTGCCTAAATAATGATCTTGAGATGT
1135154 GATGACAACCATGAACCAAGGTTGCCTAAATAATGATCTTGAGATG
1 GATGACAACCATGAACCAAGGTTGCCTAAATAATGATCTTGAGATG
1135200 GATTTCTAAC
Statistics
Matches: 45, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
47 45 1.00
ACGTcount: A:0.35, C:0.17, G:0.23, T:0.25
Consensus pattern (47 bp):
GATGACAACCATGAACCAAGGTTGCCTAAATAATGATCTTGAGATGT
Found at i:1138395 original size:12 final size:11
Alignment explanation
Indices: 1138373--1138448 Score: 52
Period size: 12 Copynumber: 6.9 Consensus size: 11
1138363 AGAGAAAGAA
*
1138373 GAGAGAGGAGG
1 GAGATAGGAGG
1138384 GATGATAGGAGG
1 GA-GATAGGAGG
*
1138396 AGAGACAGGA--
1 -GAGATAGGAGG
*
1138406 GAGATAGTA--
1 GAGATAGGAGG
1138415 GAGATAGGAGG
1 GAGATAGGAGG
1138426 GATGATAGGAGG
1 GA-GATAGGAGG
*
1138438 AGAGACAGGAG
1 -GAGATAGGAG
1138449 AGATAATAGA
Statistics
Matches: 53, Mismatches: 6, Indels: 11
0.76 0.09 0.16
Matches are distributed among these distances:
9 15 0.28
11 4 0.08
12 30 0.57
13 4 0.08
ACGTcount: A:0.39, C:0.03, G:0.49, T:0.09
Consensus pattern (11 bp):
GAGATAGGAGG
Found at i:1138405 original size:24 final size:24
Alignment explanation
Indices: 1138372--1138457 Score: 85
Period size: 24 Copynumber: 3.8 Consensus size: 24
1138362 AAGAGAAAGA
*
1138372 AGAGAGAGGAGGGATGATAGGAGG
1 AGAGACAGGAGGGATGATAGGAGG
*
1138396 AGAGACAGGA--GA-GAT---AGT
1 AGAGACAGGAGGGATGATAGGAGG
*
1138414 AGAGATAGGAGGGATGATAGGAGG
1 AGAGACAGGAGGGATGATAGGAGG
* *
1138438 AGAGACAGGAGAGATAATAG
1 AGAGACAGGAGGGATGATAG
1138458 AGAGAGGAGG
Statistics
Matches: 49, Mismatches: 7, Indels: 12
0.72 0.10 0.18
Matches are distributed among these distances:
18 11 0.22
20 2 0.04
21 6 0.12
22 2 0.04
24 28 0.57
ACGTcount: A:0.42, C:0.02, G:0.45, T:0.10
Consensus pattern (24 bp):
AGAGACAGGAGGGATGATAGGAGG
Found at i:1138424 original size:42 final size:42
Alignment explanation
Indices: 1138363--1138481 Score: 184
Period size: 42 Copynumber: 2.8 Consensus size: 42
1138353 TAGCCCTCAA
* *
1138363 AGAGAAAGAAGAGAGAGGAGGGATGATAGGAGGAGAGACAGG
1 AGAGATAGTAGAGAGAGGAGGGATGATAGGAGGAGAGACAGG
*
1138405 AGAGATAGTAGAGATAGGAGGGATGATAGGAGGAGAGACAGG
1 AGAGATAGTAGAGAGAGGAGGGATGATAGGAGGAGAGACAGG
* * *
1138447 AGAGATAATAGAGAGAGGAGGGATGACAGAAGGAG
1 AGAGATAGTAGAGAGAGGAGGGATGATAGGAGGAG
1138482 GAGAGAAGAA
Statistics
Matches: 70, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
42 70 1.00
ACGTcount: A:0.44, C:0.03, G:0.45, T:0.08
Consensus pattern (42 bp):
AGAGATAGTAGAGAGAGGAGGGATGATAGGAGGAGAGACAGG
Found at i:1145205 original size:12 final size:11
Alignment explanation
Indices: 1145183--1145258 Score: 52
Period size: 12 Copynumber: 6.9 Consensus size: 11
1145173 AGAGAAAGAA
*
1145183 GAGAGAGGAGG
1 GAGATAGGAGG
1145194 GATGATAGGAGG
1 GA-GATAGGAGG
*
1145206 AGAGACAGGA--
1 -GAGATAGGAGG
*
1145216 GAGATAGTA--
1 GAGATAGGAGG
1145225 GAGATAGGAGG
1 GAGATAGGAGG
1145236 GATGATAGGAGG
1 GA-GATAGGAGG
*
1145248 AGAGACAGGAG
1 -GAGATAGGAG
1145259 AGATAATAGA
Statistics
Matches: 53, Mismatches: 6, Indels: 11
0.76 0.09 0.16
Matches are distributed among these distances:
9 15 0.28
11 4 0.08
12 30 0.57
13 4 0.08
ACGTcount: A:0.39, C:0.03, G:0.49, T:0.09
Consensus pattern (11 bp):
GAGATAGGAGG
Found at i:1145215 original size:24 final size:24
Alignment explanation
Indices: 1145182--1145267 Score: 85
Period size: 24 Copynumber: 3.8 Consensus size: 24
1145172 AAGAGAAAGA
*
1145182 AGAGAGAGGAGGGATGATAGGAGG
1 AGAGACAGGAGGGATGATAGGAGG
*
1145206 AGAGACAGGA--GA-GAT---AGT
1 AGAGACAGGAGGGATGATAGGAGG
*
1145224 AGAGATAGGAGGGATGATAGGAGG
1 AGAGACAGGAGGGATGATAGGAGG
* *
1145248 AGAGACAGGAGAGATAATAG
1 AGAGACAGGAGGGATGATAG
1145268 AGAGAGGAGG
Statistics
Matches: 49, Mismatches: 7, Indels: 12
0.72 0.10 0.18
Matches are distributed among these distances:
18 11 0.22
20 2 0.04
21 6 0.12
22 2 0.04
24 28 0.57
ACGTcount: A:0.42, C:0.02, G:0.45, T:0.10
Consensus pattern (24 bp):
AGAGACAGGAGGGATGATAGGAGG
Found at i:1145234 original size:42 final size:42
Alignment explanation
Indices: 1145173--1145291 Score: 193
Period size: 42 Copynumber: 2.8 Consensus size: 42
1145163 TAGCCCTCAA
* *
1145173 AGAGAAAGAAGAGAGAGGAGGGATGATAGGAGGAGAGACAGG
1 AGAGATAGTAGAGAGAGGAGGGATGATAGGAGGAGAGACAGG
*
1145215 AGAGATAGTAGAGATAGGAGGGATGATAGGAGGAGAGACAGG
1 AGAGATAGTAGAGAGAGGAGGGATGATAGGAGGAGAGACAGG
* *
1145257 AGAGATAATAGAGAGAGGAGGGATGACAGGAGGAG
1 AGAGATAGTAGAGAGAGGAGGGATGATAGGAGGAG
1145292 GAGAGAAGAA
Statistics
Matches: 71, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
42 71 1.00
ACGTcount: A:0.43, C:0.03, G:0.46, T:0.08
Consensus pattern (42 bp):
AGAGATAGTAGAGAGAGGAGGGATGATAGGAGGAGAGACAGG
Found at i:1151799 original size:78 final size:79
Alignment explanation
Indices: 1151661--1152284 Score: 684
Period size: 79 Copynumber: 7.9 Consensus size: 79
1151651 TGTCATCAAT
** *
1151661 GGATACTCCCAACCCTATTATTTTCGAGGGGATACTCCAACCCCGATTTTATTTTCAAAATATCA
1 GGATACT-CCAACCCCGTTATTTTCGAGGGGATACTCCAACCCCGATTTTATTTCCAAAATATCA
* *
1151726 AATTTTCACCATCGA
65 ATTTTTCACCATCGG
* * * * **
1151741 GGATACTCCAATCCCGTTATTTTTGAGGGGATACTGC-ACCCCGATTTTATTTCTAAAATATTGA
1 GGATACTCCAACCCCGTTATTTTCGAGGGGATACTCCAACCCCGATTTTATTTCCAAAATATCAA
1151805 TTTTTCACCATCGG
66 TTTTTCACCATCGG
* ** **
1151819 GGATACTGCAACCCCGTTA-TTTCTGAGGGGATACTCCAAGTCCGATTTTATTTTTAAAATATCA
1 GGATACTCCAACCCCGTTATTTTC-GAGGGGATACTCCAACCCCGATTTTATTTCCAAAATATCA
*
1151883 ATTTTTCCCCATCGG
65 ATTTTTCACCATCGG
* * * ** * * **
1151898 GGATACTCTAACCCCGTTATTTCCGAGGGGACA-TTAAAACCCTAGTTTTATTTCCAAAATATTG
1 GGATACTCCAACCCCGTTATTTTCGAGGGGATACTCCAACCCCGA-TTTTATTTCCAAAATATCA
*
1151962 ATTTTTCACCATTGG
65 ATTTTTCACCATCGG
* *
1151977 GGATACTCCAACCCCATTATTTTC-AGGGAGATACTCCAACCCCGATTTTATTTCCAAAATATCG
1 GGATACTCCAACCCCGTTATTTTCGAGGG-GATACTCCAACCCCGATTTTATTTCCAAAATATCA
1152041 ATTTTTCACCATCGG
65 ATTTTTCACCATCGG
** * * * * *
1152056 GGATACTTTAACCTCATTATTTTCGA-GGGATACTCTAATCCCGTTTTTATTTCCAAAATATCAA
1 GGATACTCCAACCCCGTTATTTTCGAGGGGATACTCCAACCCCGATTTTATTTCCAAAATATCAA
*
1152120 TTTTTCACCATCTG
66 TTTTTCACCATCGG
* * ** * * *
1152134 GGATACTCTAA-CCCGTTATTTTCAAGGGGATACTCTTACCCTGGTTTTATTTCCAAAATATCGA
1 GGATACTCCAACCCCGTTATTTTCGAGGGGATACTCCAACCCCGATTTTATTTCCAAAATATCAA
* *
1152198 TTTTTTACCATCAG
66 TTTTTCACCATCGG
* * * * * * *
1152212 AGATACTTCAACCCCGTTATTTTTGAGGGGATACTCCAACCCAGTTTTTATATCCAAAATATTAA
1 GGATACTCCAACCCCGTTATTTTCGAGGGGATACTCCAACCCCGATTTTATTTCCAAAATA-TCA
1152277 ATTTTTCA
65 ATTTTTCA
1152285 TCGGGGAATG
Statistics
Matches: 456, Mismatches: 78, Indels: 20
0.82 0.14 0.04
Matches are distributed among these distances:
77 14 0.03
78 182 0.40
79 234 0.51
80 26 0.06
ACGTcount: A:0.27, C:0.23, G:0.13, T:0.36
Consensus pattern (79 bp):
GGATACTCCAACCCCGTTATTTTCGAGGGGATACTCCAACCCCGATTTTATTTCCAAAATATCAA
TTTTTCACCATCGG
Found at i:1151889 original size:157 final size:155
Alignment explanation
Indices: 1151678--1152284 Score: 664
Period size: 157 Copynumber: 3.9 Consensus size: 155
1151668 CCCAACCCTA
* *
1151678 TTATTTTCGAGGGGATACTCCAACCCCGATTTTATTTTCAAAATATCAAATTTTCACCATCGAGG
1 TTATTTT-GAGGGGATACTCCAACCCCGATTTTATTTCCAAAATATCAATTTTTCACCATCGAGG
* * * *
1151743 ATACTCCAATCCCGTTATTTTTGAGGGGATACTGC-ACCCCGATTTTATTTCTAAAATATTGATT
65 ATACTCCAACCCCGTTATTTTCGAGGGGATACT-CAACCCCGATTTTATTTCCAAAATATTAATT
1151807 TTTCACCATCGGGGATACTGCAACCCCG
129 TTTCACCATCGGGGATACT-CAACCCCG
** ** * *
1151835 TTATTTCTGAGGGGATACTCCAAGTCCGATTTTATTTTTAAAATATCAATTTTTCCCCATCGGGG
1 TTATTT-TGAGGGGATACTCCAACCCCGATTTTATTTCCAAAATATCAATTTTTCACCATCGAGG
* * * * * * * *
1151900 ATACTCTAACCCCGTTATTTCCGAGGGGACATTAAAACCCTAGTTTTATTTCCAAAATATTGATT
65 ATACTCCAACCCCGTTATTTTCGAGGGGATACTCAACCCCGA-TTTTATTTCCAAAATATTAATT
* *
1151965 TTTCACCATTGGGGATACTCCAACCCCA
129 TTTCACCATCGGGGATACT-CAACCCCG
* * *
1151993 TTATTTTCAGGGAGATACTCCAACCCCGATTTTATTTCCAAAATATCGATTTTTCACCATCGGGG
1 TTATTTTGAGGG-GATACTCCAACCCCGATTTTATTTCCAAAATATCAATTTTTCACCATCGAGG
** * * * * *
1152058 ATACTTTAACCTCATTATTTTCGA-GGGATACTCTAATCCCGTTTTTATTTCCAAAATATCAATT
65 ATACTCCAACCCCGTTATTTTCGAGGGGATACTC-AACCCCGATTTTATTTCCAAAATATTAATT
*
1152122 TTTCACCATCTGGGATACTCTAA-CCCG
129 TTTCACCATCGGGGATACTC-AACCCCG
* ** * * * *
1152149 TTATTTTCAAGGGGATACTCTTACCCTGGTTTTATTTCCAAAATATCGATTTTTTACCATC-AGA
1 TTATTTT-GAGGGGATACTCCAACCCCGATTTTATTTCCAAAATATCAATTTTTCACCATCGAG-
* * * * *
1152213 GATACTTCAACCCCGTTATTTTTGAGGGGATACTCCAACCCAGTTTTTATATCCAAAATATTAAA
64 GATACTCCAACCCCGTTATTTTCGAGGGGATACT-CAACCCCGATTTTATTTCCAAAATATT-AA
1152278 TTTTTCA
127 TTTTTCA
1152285 TCGGGGAATG
Statistics
Matches: 383, Mismatches: 56, Indels: 21
0.83 0.12 0.05
Matches are distributed among these distances:
155 1 0.00
156 75 0.20
157 173 0.45
158 134 0.35
ACGTcount: A:0.27, C:0.23, G:0.14, T:0.37
Consensus pattern (155 bp):
TTATTTTGAGGGGATACTCCAACCCCGATTTTATTTCCAAAATATCAATTTTTCACCATCGAGGA
TACTCCAACCCCGTTATTTTCGAGGGGATACTCAACCCCGATTTTATTTCCAAAATATTAATTTT
TCACCATCGGGGATACTCAACCCCG
Found at i:1156473 original size:36 final size:37
Alignment explanation
Indices: 1156423--1156621 Score: 107
Period size: 34 Copynumber: 5.7 Consensus size: 37
1156413 TTGGCAACAC
* *** *
1156423 TTAAAGTCCGCACAAGTCAGTGGCAATGGATCC-TTT
1 TTAAAGTCCACACAAGTCAGTGGCAACCAAACCTTTT
* * *
1156459 TTAAAGTCAACACAAATTAGTGGCAACCAAACCTTTT
1 TTAAAGTCCACACAAGTCAGTGGCAACCAAACCTTTT
**
1156496 TTAAAGTCCACACAAGTTGGTGGC-A-CAATA--TTTT
1 TTAAAGTCCACACAAGTCAGTGGCAACCAA-ACCTTTT
* * ** *
1156530 TCAAAGCCCACACAAGTTGGTGGC-A-C-AACCCTTT
1 TTAAAGTCCACACAAGTCAGTGGCAACCAAACCTTTT
** ** *
1156564 CCAAAGTCCACACAAGTTGGTGG-TA-CAAACCTTTT
1 TTAAAGTCCACACAAGTCAGTGGCAACCAAACCTTTT
* *
1156599 TCAAAG-CC-CATAAGTCAGTGGCA
1 TTAAAGTCCACACAAGTCAGTGGCA
1156622 CCCTTTTAAA
Statistics
Matches: 134, Mismatches: 22, Indels: 16
0.78 0.13 0.09
Matches are distributed among these distances:
32 1 0.01
33 11 0.08
34 56 0.42
35 15 0.11
36 27 0.20
37 24 0.18
ACGTcount: A:0.33, C:0.24, G:0.18, T:0.26
Consensus pattern (37 bp):
TTAAAGTCCACACAAGTCAGTGGCAACCAAACCTTTT
Found at i:1156541 original size:34 final size:33
Alignment explanation
Indices: 1156492--1156608 Score: 135
Period size: 34 Copynumber: 3.4 Consensus size: 33
1156482 CAACCAAACC
* *
1156492 TTTTTTAAAGTCCACACAAGTTGGTGGCACAATA
1 TTTTTCAAAGCCCACACAAGTTGGTGGCACAA-A
*
1156526 TTTTTCAAAGCCCACACAAGTTGGTGGCACAACC
1 TTTTTCAAAGCCCACACAAGTTGGTGGCACAA-A
* * * *
1156560 CTTTCCAAAGTCCACACAAGTTGGTGGTACAAA
1 TTTTTCAAAGCCCACACAAGTTGGTGGCACAAA
1156593 CCTTTTTCAAAGCCCA
1 --TTTTTCAAAGCCCA
1156609 TAAGTCAGTG
Statistics
Matches: 69, Mismatches: 12, Indels: 3
0.82 0.14 0.04
Matches are distributed among these distances:
34 58 0.84
35 11 0.16
ACGTcount: A:0.31, C:0.26, G:0.16, T:0.27
Consensus pattern (33 bp):
TTTTTCAAAGCCCACACAAGTTGGTGGCACAAA
Found at i:1156635 original size:28 final size:30
Alignment explanation
Indices: 1156592--1156666 Score: 86
Period size: 28 Copynumber: 2.6 Consensus size: 30
1156582 GGTGGTACAA
*
1156592 ACCT-TTTTCAAAGCCCAT-AAGTCAGTGGC
1 ACCTCTTTTAAAAGCCCATGAA-TCAGTGGC
*
1156621 ACC-CTTTT-AAAGCCCATGAATCAGTTGC
1 ACCTCTTTTAAAAGCCCATGAATCAGTGGC
*
1156649 ACCTTTTTTAAAAGCCCA
1 ACCTCTTTTAAAAGCCCA
1156667 ACAATACTGG
Statistics
Matches: 40, Mismatches: 2, Indels: 7
0.82 0.04 0.14
Matches are distributed among these distances:
28 19 0.47
29 13 0.32
30 8 0.20
ACGTcount: A:0.29, C:0.28, G:0.13, T:0.29
Consensus pattern (30 bp):
ACCTCTTTTAAAAGCCCATGAATCAGTGGC
Found at i:1157657 original size:20 final size:20
Alignment explanation
Indices: 1157632--1157705 Score: 60
Period size: 20 Copynumber: 3.6 Consensus size: 20
1157622 CTGGAAAAAT
*
1157632 TGTATCAATACATAAGTGAA
1 TGTATCAATACATAACTGAA
* * *
1157652 TGTATCGATATAT-GCTTGCAA
1 TGTATCAATACATAAC-TG-AA
* * *
1157673 TGTATCGATACATCACTAAA
1 TGTATCAATACATAACTGAA
1157693 TGTATCAATACAT
1 TGTATCAATACAT
1157706 TCTAGGTTTT
Statistics
Matches: 43, Mismatches: 8, Indels: 6
0.75 0.14 0.11
Matches are distributed among these distances:
20 27 0.63
21 15 0.35
22 1 0.02
ACGTcount: A:0.38, C:0.15, G:0.14, T:0.34
Consensus pattern (20 bp):
TGTATCAATACATAACTGAA
Found at i:1161250 original size:103 final size:102
Alignment explanation
Indices: 1161037--1161257 Score: 280
Period size: 103 Copynumber: 2.1 Consensus size: 102
1161027 CCTTGGAAGA
* * * * *
1161037 TGAGGTTAGAGTATCCTCGTGGATAACAAATAATTTTGACAAAACAATAGTTCAAATCTTGATAA
1 TGAGGTTGGAGTATCCCCATGGATAACAAATAATTTTGACAAAACAAGAGTTCAAATCTAGATAA
** * *
1161102 ATTTTGAAAAGTGAGGTTAGAGTATCCCCTCGAAAGG
66 ATTTTGAAAAGCAAGGTTAGAGTATCCACTCAAAAGG
* * ** *
1161139 TTAGGGTTGGAATATCCCCATGGATAACAAATAATTTTGACAAAGGAGGAGTTCAAATCTAGATA
1 TGA-GGTTGGAGTATCCCCATGGATAACAAATAATTTTGACAAAACAAGAGTTCAAATCTAGATA
* *
1161204 AATTTTGAAGAGCAAGGTTGGAGTATCCACTCAAAAGG
65 AATTTTGAAAAGCAAGGTTAGAGTATCCACTCAAAAGG
1161242 TCGAGGTTGGAGTATC
1 T-GAGGTTGGAGTATC
1161258 ATCATGAATA
Statistics
Matches: 99, Mismatches: 18, Indels: 3
0.82 0.15 0.03
Matches are distributed among these distances:
102 2 0.02
103 96 0.97
104 1 0.01
ACGTcount: A:0.36, C:0.13, G:0.23, T:0.28
Consensus pattern (102 bp):
TGAGGTTGGAGTATCCCCATGGATAACAAATAATTTTGACAAAACAAGAGTTCAAATCTAGATAA
ATTTTGAAAAGCAAGGTTAGAGTATCCACTCAAAAGG
Found at i:1163134 original size:161 final size:161
Alignment explanation
Indices: 1162877--1163377 Score: 553
Period size: 161 Copynumber: 3.1 Consensus size: 161
1162867 ATATTTATGA
* * * * ** * * *
1162877 AGTAGGAAACTCGGTTTTTCAAAGAAAAGGGATTTCAAGGAAAAAATTCAAAATTTATGGAAATG
1 AGTAGAAAACTCCGTATTTCAAA-AAAA-AGATTTCAAGGAAAAAATAAAAAACTCATGAAAATG
* * * * *
1162942 AATGAATATTTAAAAACTGAATTACTATGAAATAAATAAAAATATTTTATGACTTTTAAAAATTA
64 AATGAATTTTTGAAAACTGAATTAATATGAAATAAATAAAAATATTTGATGAATTTTAAAAATTA
*
1163007 AAAATCAAGAAAAATCTCGCCAAAACAATTACGG
129 AAAATCAAGAAAAATCTC-CCAAAAAAATTACGG
*
1163041 AGTAGAAAACTCCGTATTTCAAAAAAAAGATTTC-AGGGAAAAATAAAAAACTCATGAAAATGAA
1 AGTAGAAAACTCCGTATTTCAAAAAAAAGATTTCAAGGAAAAAATAAAAAACTCATGAAAATGAA
1163105 TGAATTTTTGAAAACTGAATTAATATGAAATAAATAAAAATATTTGATGAATTTTAAAAATTAAA
66 TGAATTTTTGAAAACTGAATTAATATGAAATAAATAAAAATATTTGATGAATTTTAAAAATTAAA
* * *
1163170 AACCAAGAAAAATC-CCCTAAAAAAAATCACGA
131 AATCAAGAAAAATCTCCC--AAAAAAATTACGG
* * * * * * *
1163202 AGTA-AAAAATATCGTATTTTGAAAAAGGGAA-ATTTCAAGGAAAAAATCAAAAAC-CTGTGTAA
1 AGTAGAAAACT-CCGTA-TTTCAAAAA--AAAGATTTCAAGGAAAAAATAAAAAACTC-ATGAAA
* * *
1163264 ATGAATGAATTTTTGAAAATTGAATTAATATAAAAATAAATAGAAATATTTGATGAATTTTAAAA
61 ATGAATGAATTTTTGAAAACTGAATTAATAT-GAAATAAATAAAAATATTTGATGAATTTTAAAA
* * *
1163329 ATTAAAAATTAAAAAAAATCCTCCCAAAAAAATTTACAG
125 ATTAAAAATCAAGAAAAAT-CTCCCAAAAAAA-TTACGG
*
1163368 AGAAGAAAAC
1 AGTAGAAAAC
1163378 CCCATAATTT
Statistics
Matches: 286, Mismatches: 38, Indels: 23
0.82 0.11 0.07
Matches are distributed among these distances:
159 2 0.01
160 6 0.02
161 115 0.40
162 14 0.05
163 10 0.03
164 71 0.25
165 54 0.19
166 7 0.02
167 7 0.02
ACGTcount: A:0.53, C:0.09, G:0.12, T:0.27
Consensus pattern (161 bp):
AGTAGAAAACTCCGTATTTCAAAAAAAAGATTTCAAGGAAAAAATAAAAAACTCATGAAAATGAA
TGAATTTTTGAAAACTGAATTAATATGAAATAAATAAAAATATTTGATGAATTTTAAAAATTAAA
AATCAAGAAAAATCTCCCAAAAAAATTACGG
Found at i:1166541 original size:31 final size:31
Alignment explanation
Indices: 1166506--1166572 Score: 62
Period size: 31 Copynumber: 2.2 Consensus size: 31
1166496 ACCCCTTTCA
* * *
1166506 TCTTTGTCCTCAAAGAGCAAGATATTTTCTT
1 TCTTTGTCCTCAAAGAGTAGGATGTTTTCTT
* * * *
1166537 TCTTTATTCTCAAAGAGCAAGATGTTTTCTT
1 TCTTTGTCCTCAAAGAGTAGGATGTTTTCTT
*
1166568 CCTTT
1 TCTTT
1166573 CTTCCTTTAT
Statistics
Matches: 32, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
31 32 1.00
ACGTcount: A:0.24, C:0.19, G:0.12, T:0.45
Consensus pattern (31 bp):
TCTTTGTCCTCAAAGAGTAGGATGTTTTCTT
Found at i:1166662 original size:62 final size:62
Alignment explanation
Indices: 1166596--1167345 Score: 461
Period size: 62 Copynumber: 12.3 Consensus size: 62
1166586 AAAAAAGCAA
* *
1166596 GATGTTTTCTTCCTTTGTCCTCAAAGAGCATGATGTTTTCTTCTTTTGTCCTCAAAGAGTAG
1 GATGTTTTCTTCCTTTGTCCTCAAAGAGTAGGATGTTTTCTTCTTTTGTCCTCAAAGAGTAG
* * *
1166658 GATGTTTTTTCTTCCTTTGTCCTCAAAGAGTAGGATGGTTCCTTCTTTTGTCCTTAAAGAGTAG
1 GATG--TTTTCTTCCTTTGTCCTCAAAGAGTAGGATGTTTTCTTCTTTTGTCCTCAAAGAGTAG
* * * ** * * *
1166722 GAAGTTTT-TTTCTTTGTCCTCAAAGAGCAGGACATTTTCTT-TCTTTGTTCTCAAAGAGCAA
1 GATGTTTTCTTCCTTTGTCCTCAAAGAGTAGGATGTTTTCTTCT-TTTGTCCTCAAAGAGTAG
* * * * * * * * *
1166783 GACGTTTTCTTTCTTTGTTCTCAAAGAGCAAGACGTTTTCTTTTTTTGTCCTTAAAGAGCA-
1 GATGTTTTCTTCCTTTGTCCTCAAAGAGTAGGATGTTTTCTTCTTTTGTCCTCAAAGAGTAG
* * * ** *
1166844 -A-----CCTT-TTTTATCCTCAAAGAG-A--A----ACCTTC-TTTATCCTCAAAGAGTAG
1 GATGTTTTCTTCCTTTGTCCTCAAAGAGTAGGATGTTTTCTTCTTTTGTCCTCAAAGAGTAG
** * * * * * *
1166891 GACCTTTTTTTCTTTTTTTCCTCAAAGAGCAAGG-TGTTTTCTT-TCTTTGGCCTCAAAGATTAG
1 GATGTTTTCTTC-CTTTGTCCTCAAAGAG-TAGGATGTTTTCTTCT-TTTGTCCTCAAAGAGTAG
** * * * * *
1166954 GACATTTTCTTCCTTTGGCCTCAAACAGTAGGACGTTTTCCTTC-TTTGGCCTCAAACAGTAG
1 GATGTTTTCTTCCTTTGTCCTCAAAGAGTAGGATGTTTT-CTTCTTTTGTCCTCAAAGAGTAG
** * * *
1167016 GACATTTTCTTTCTTTGGCCTCAAAGAGTAGGATGTTTTCCTTC-TTTGTCCTTAAAGAGTAG
1 GATGTTTTCTTCCTTTGTCCTCAAAGAGTAGGATGTTTT-CTTCTTTTGTCCTCAAAGAGTAG
* * * * ** * *
1167078 GATGTTTTCTTCCTTTCTTTATCCTTAAAAAGTAGGATGTTTTCTTCATTTGTTATTAAAGAGCA
1 GATGTTTTCTT-C---CTTTGTCCTCAAAGAGTAGGATGTTTTCTTCTTTTGTCCTCAAAGAGTA
1167143 G
62 G
** * * * * * * * * *
1167144 GATGTTTTCTTTTTTTATCCCCAAAGAGTGGGACGTTTCCCTCCTTTGTCCTCAAAAAGAAG
1 GATGTTTTCTTCCTTTGTCCTCAAAGAGTAGGATGTTTTCTTCTTTTGTCCTCAAAGAGTAG
* * * * * *
1167206 GATGCTTTCTTTCTTTGTCCTTAAAGAGTAAGATGTTTTCTT-TCTTTG-CCTTAAAAAAGTAG
1 GATGTTTTCTTCCTTTGTCCTCAAAGAGTAGGATGTTTTCTTCT-TTTGTCC-TCAAAGAGTAG
*** * * * * *
1167268 GGCATTTTCTTCCTTTGTCATCAAAAAGCAAGATATTTTCTT-TTTCTGTCCTCAAAGAGTAG
1 GATGTTTTCTTCCTTTGTCCTCAAAGAGTAGGATGTTTTCTTCTTT-TGTCCTCAAAGAGTAG
1167330 GATGTTTTCTTCCTTT
1 GATGTTTTCTTCCTTT
1167346 CTTTGTCCTT
Statistics
Matches: 543, Mismatches: 109, Indels: 72
0.75 0.15 0.10
Matches are distributed among these distances:
46 14 0.03
47 3 0.01
48 1 0.00
51 1 0.00
53 3 0.01
54 13 0.02
55 18 0.03
57 1 0.00
60 2 0.00
61 55 0.10
62 292 0.54
63 31 0.06
64 56 0.10
65 4 0.01
66 49 0.09
ACGTcount: A:0.22, C:0.19, G:0.17, T:0.42
Consensus pattern (62 bp):
GATGTTTTCTTCCTTTGTCCTCAAAGAGTAGGATGTTTTCTTCTTTTGTCCTCAAAGAGTAG
Found at i:1166678 original size:64 final size:63
Alignment explanation
Indices: 1166600--1166841 Score: 276
Period size: 64 Copynumber: 3.9 Consensus size: 63
1166590 AAGCAAGATG
* * *
1166600 TTTTCTTCCTTTGTCCTCAAAGAGCATGATGTTTTCTTCTTTTGTCCTCAAAGAGTAGGATGTT
1 TTTTCTTCCTTTGTCCTCAAAGAGCAGGACGTTTTCTTCTTTTGTCCTCAAAGAGTAGGAAG-T
* * * * *
1166664 TTTTCTTCCTTTGTCCTCAAAGAGTAGGATGGTTCCTTCTTTTGTCCTTAAAGAGTAGGAAGT
1 TTTTCTTCCTTTGTCCTCAAAGAGCAGGACGTTTTCTTCTTTTGTCCTCAAAGAGTAGGAAGT
* * * * *
1166727 TTTT-TT-CTTTGTCCTCAAAGAGCAGGACATTTTCTT-TCTTTGTTCTCAAAGAGCAAGACG-
1 TTTTCTTCCTTTGTCCTCAAAGAGCAGGACGTTTTCTTCT-TTTGTCCTCAAAGAGTAGGAAGT
* * * * *
1166787 TTTTCTTTCTTTGTTCTCAAAGAGCAAGACGTTTTCTTTTTTTGTCCTTAAAGAG
1 TTTTCTTCCTTTGTCCTCAAAGAGCAGGACGTTTTCTTCTTTTGTCCTCAAAGAG
1166842 CAACCTTTTT
Statistics
Matches: 153, Mismatches: 21, Indels: 10
0.83 0.11 0.05
Matches are distributed among these distances:
60 5 0.03
61 44 0.29
62 42 0.27
63 6 0.04
64 56 0.37
ACGTcount: A:0.21, C:0.18, G:0.17, T:0.44
Consensus pattern (63 bp):
TTTTCTTCCTTTGTCCTCAAAGAGCAGGACGTTTTCTTCTTTTGTCCTCAAAGAGTAGGAAGT
Found at i:1166825 original size:31 final size:31
Alignment explanation
Indices: 1166591--1167393 Score: 371
Period size: 31 Copynumber: 26.1 Consensus size: 31
1166581 ATCCCAAAAA
*
1166591 AGCAAGATGTTTTCTTCCTTTGTCCTCAAAG
1 AGCAAGATGTTTTCTTTCTTTGTCCTCAAAG
*
1166622 AGCATGATGTTTTC-TTCTTTTGTCCTCAAAG
1 AGCAAGATGTTTTCTTTC-TTTGTCCTCAAAG
* * *
1166653 AGTAGGATGTTTTTTCTTCCTTTGTCCTCAAAG
1 AGCAAGATG--TTTTCTTTCTTTGTCCTCAAAG
* * * * *
1166686 AGTAGGATG-GTTCCTTCTTTTGTCCTTAAAG
1 AGCAAGATGTTTTCTTTC-TTTGTCCTCAAAG
* * *
1166717 AGTAGGAAGTTTT-TTTCTTTGTCCTCAAAG
1 AGCAAGATGTTTTCTTTCTTTGTCCTCAAAG
* ** *
1166747 AGCAGGACATTTTCTTTCTTTGTTCTCAAAG
1 AGCAAGATGTTTTCTTTCTTTGTCCTCAAAG
* *
1166778 AGCAAGACGTTTTCTTTCTTTGTTCTCAAAG
1 AGCAAGATGTTTTCTTTCTTTGTCCTCAAAG
* * *
1166809 AGCAAGACGTTTTCTTTTTTTGTCCTTAAAG
1 AGCAAGATGTTTTCTTTCTTTGTCCTCAAAG
* *
1166840 AGC-A-A-----CCTTT-TTTATCCTCAAAG
1 AGCAAGATGTTTTCTTTCTTTGTCCTCAAAG
* *
1166863 AG-AA-A------CCTTCTTTATCCTCAAAG
1 AGCAAGATGTTTTCTTTCTTTGTCCTCAAAG
* * *
1166886 AGTAGGACCTTTTTTTCTTT-TTT-TCCTCAAAG
1 AGCAAGA---TGTTTTCTTTCTTTGTCCTCAAAG
* *
1166918 AGCAAGGTGTTTTCTTTCTTTGGCCTCAAAG
1 AGCAAGATGTTTTCTTTCTTTGTCCTCAAAG
** * ** * * *
1166949 ATTAGGACATTTTCTTCCTTTGGCCTCAAAC
1 AGCAAGATGTTTTCTTTCTTTGTCCTCAAAG
* * * * * *
1166980 AGTAGGACGTTTTCCTTCTTTGGCCTCAAAC
1 AGCAAGATGTTTTCTTTCTTTGTCCTCAAAG
* * ** *
1167011 AGTAGGACATTTTCTTTCTTTGGCCTCAAAG
1 AGCAAGATGTTTTCTTTCTTTGTCCTCAAAG
* * * *
1167042 AGTAGGATGTTTTCCTTCTTTGTCCTTAAAG
1 AGCAAGATGTTTTCTTTCTTTGTCCTCAAAG
* * * * *
1167073 AGTAGGATGTTTTCTTCCTTTCTTTATCCTTAAAA
1 AGCAAGATG--TT-TT-CTTTCTTTGTCCTCAAAG
* * ** *
1167108 AGTAGGATGTTTTC-TTCATTTGTTATTAAAG
1 AGCAAGATGTTTTCTTTC-TTTGTCCTCAAAG
* * * *
1167139 AGCAGGATGTTTTCTTTTTTTATCCCCAAAG
1 AGCAAGATGTTTTCTTTCTTTGTCCTCAAAG
*** * * * * *
1167170 AGTGGGACGTTTCCCTCCTTTGTCCTCAAAA
1 AGCAAGATGTTTTCTTTCTTTGTCCTCAAAG
* *
1167201 AG-AAGGATGCTTTCTTTCTTTGTCCTTAAAG
1 AGCAA-GATGTTTTCTTTCTTTGTCCTCAAAG
* * *
1167232 AGTAAGATGTTTTCTTTCTTTG-CCTTAAAAA
1 AGCAAGATGTTTTCTTTCTTTGTCC-TCAAAG
* * *** * * *
1167263 AGTAGGGCATTTTCTTCCTTTGTCATCAAAA
1 AGCAAGATGTTTTCTTTCTTTGTCCTCAAAG
*
1167294 AGCAAGATATTTTCTTT-TTCTGTCCTCAAAG
1 AGCAAGATGTTTTCTTTCTT-TGTCCTCAAAG
* * *
1167325 AGTAGGATGTTTTCTTCCTTTCTTTGTCCTTAAAG
1 AGCAAGATG--TT-TT-CTTTCTTTGTCCTCAAAG
* * * * *
1167360 A-CAAGATGCTTCCTTTATTTATCCTCAAAA
1 AGCAAGATGTTTTCTTTCTTTGTCCTCAAAG
1167390 AGCA
1 AGCA
1167394 GGACACCTCT
Statistics
Matches: 618, Mismatches: 115, Indels: 78
0.76 0.14 0.10
Matches are distributed among these distances:
22 3 0.00
23 30 0.05
24 5 0.01
25 1 0.00
29 10 0.02
30 55 0.09
31 400 0.65
32 23 0.04
33 36 0.06
34 14 0.02
35 39 0.06
36 2 0.00
ACGTcount: A:0.23, C:0.19, G:0.16, T:0.42
Consensus pattern (31 bp):
AGCAAGATGTTTTCTTTCTTTGTCCTCAAAG
Found at i:1166850 original size:23 final size:23
Alignment explanation
Indices: 1166824--1166887 Score: 92
Period size: 23 Copynumber: 2.8 Consensus size: 23
1166814 GACGTTTTCT
* * *
1166824 TTTTTTGTCCTTAAAGAGCAACC
1 TTTTTTATCCTCAAAGAGAAACC
1166847 TTTTTTATCCTCAAAGAGAAACC
1 TTTTTTATCCTCAAAGAGAAACC
*
1166870 TTCTTTATCCTCAAAGAG
1 TTTTTTATCCTCAAAGAG
1166888 TAGGACCTTT
Statistics
Matches: 37, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
23 37 1.00
ACGTcount: A:0.30, C:0.22, G:0.11, T:0.38
Consensus pattern (23 bp):
TTTTTTATCCTCAAAGAGAAACC
Found at i:1167001 original size:233 final size:233
Alignment explanation
Indices: 1166635--1167074 Score: 532
Period size: 233 Copynumber: 1.9 Consensus size: 233
1166625 ATGATGTTTT
* *
1166635 CTTCTTTTGTCCTCAAAGAGTAGGATGTTTTTTCTTCCTTTGTCCTCAAAGAGTAGGATGGTTCC
1 CTTCTTTTATCCTCAAAGAGTAGGATGTTTTTTCTT-CTTTGTCCTCAAAGAGAAGGATGGTTCC
* * * * * *
1166700 TTCTTTTGTCCTTAAAGAGTAGGAAGTTTTTTTCTTTGTCCTCAAAGAGCAGGACATTTTCTTTC
65 TTCTTTTGGCCTCAAAGAGTAGGAAGTTTTTTCCTTTGGCCTCAAACAGCAGGACATTTTCCTTC
** * * ** * *
1166765 TTTGTTCTCAAAGAGCAAGACGTTTTCTTTCTTTGTTCTCAAAGAGCAAGACGTTTTCTTTTTTT
130 TTTGGCCTCAAACAGCAAGACATTTTCTTTCTTTGGCCTCAAAGAGCAAGACGTTTTCCTTCTTT
1166830 GTCCTTAAAGAGCAACCTTTTTTATCCTCAAAGAGAAAC
195 GTCCTTAAAGAGCAACCTTTTTTATCCTCAAAGAGAAAC
* *
1166869 CTTC-TTTATCCTCAAAGAGTAGGACCT-TTTTTTCTT-TTTTTCCTCAAAGAGCAAGG-TGTTT
1 CTTCTTTTATCCTCAAAGAGTAGGA--TGTTTTTTCTTCTTTGTCCTCAAAGAG-AAGGATGGTT
* * * *
1166930 TCTT-TCTTTGGCCTCAAAGATTAGGACA-TTTTCTTCCTTTGGCCTCAAACAGTAGGACGTTTT
63 CCTTCT-TTTGGCCTCAAAGAGTAGGA-AGTTTT-TTCCTTTGGCCTCAAACAGCAGGACATTTT
* * * * *
1166993 CCTTCTTTGGCCTCAAACAGTAGGACATTTTCTTTCTTTGGCCTCAAAGAGTAGGATGTTTTCCT
125 CCTTCTTTGGCCTCAAACAGCAAGACATTTTCTTTCTTTGGCCTCAAAGAGCAAGACGTTTTCCT
1167058 TCTTTGTCCTTAAAGAG
190 TCTTTGTCCTTAAAGAG
1167075 TAGGATGTTT
Statistics
Matches: 173, Mismatches: 27, Indels: 13
0.81 0.13 0.06
Matches are distributed among these distances:
231 1 0.01
232 42 0.24
233 116 0.67
234 13 0.08
235 1 0.01
ACGTcount: A:0.22, C:0.20, G:0.17, T:0.41
Consensus pattern (233 bp):
CTTCTTTTATCCTCAAAGAGTAGGATGTTTTTTCTTCTTTGTCCTCAAAGAGAAGGATGGTTCCT
TCTTTTGGCCTCAAAGAGTAGGAAGTTTTTTCCTTTGGCCTCAAACAGCAGGACATTTTCCTTCT
TTGGCCTCAAACAGCAAGACATTTTCTTTCTTTGGCCTCAAAGAGCAAGACGTTTTCCTTCTTTG
TCCTTAAAGAGCAACCTTTTTTATCCTCAAAGAGAAAC
Found at i:1167959 original size:21 final size:20
Alignment explanation
Indices: 1167915--1167959 Score: 54
Period size: 20 Copynumber: 2.2 Consensus size: 20
1167905 CTTGGGATCG
*
1167915 ATACCTAGGGTGTGGTATCG
1 ATACCTAGGGTGTGGTATCA
* *
1167935 ATACCTAGTGTGATTGTATCA
1 ATACCTAGGGTG-TGGTATCA
1167956 ATAC
1 ATAC
1167960 AAGCCTTAGC
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
20 11 0.52
21 10 0.48
ACGTcount: A:0.27, C:0.16, G:0.24, T:0.33
Consensus pattern (20 bp):
ATACCTAGGGTGTGGTATCA
Found at i:1168043 original size:21 final size:21
Alignment explanation
Indices: 1168017--1168076 Score: 86
Period size: 20 Copynumber: 2.9 Consensus size: 21
1168007 TACTTAAGTA
1168017 ATTGTATCGATACATTCTAAG
1 ATTGTATCGATACATTCTAAG
* * *
1168038 ATTGTATCGATGCATT-GATG
1 ATTGTATCGATACATTCTAAG
1168058 ATTGTATCGATACATTCTA
1 ATTGTATCGATACATTCTA
1168077 GGTTTTTTAC
Statistics
Matches: 33, Mismatches: 5, Indels: 2
0.82 0.12 0.05
Matches are distributed among these distances:
20 17 0.52
21 16 0.48
ACGTcount: A:0.30, C:0.13, G:0.17, T:0.40
Consensus pattern (21 bp):
ATTGTATCGATACATTCTAAG
Found at i:1168105 original size:93 final size:93
Alignment explanation
Indices: 1167998--1168194 Score: 340
Period size: 93 Copynumber: 2.1 Consensus size: 93
1167988 TTTAGACAGC
* * * * * *
1167998 AAGTATCGATACTTAAGTAATTGTATCGATACATTCTAAGATTGTATCGATGCATTGATGATTGT
1 AAGTATCAATACTTAAGCAATTGTATCGATACATCCTAAGATTGTATCGATACATTAATGATAGT
1168063 ATCGATACATTCTAGGTTTTTTACCCAG
66 ATCGATACATTCTAGGTTTTTTACCCAG
1168091 AAGTATCAATACTTAAGCAATTGTATCGATACATCCTAAGATTGTATCGATACATTAATGATAGT
1 AAGTATCAATACTTAAGCAATTGTATCGATACATCCTAAGATTGTATCGATACATTAATGATAGT
1168156 ATCGATACATTCTAGGTTTTTTACCCAG
66 ATCGATACATTCTAGGTTTTTTACCCAG
1168184 AAGTATCAATA
1 AAGTATCAATA
1168195 TAATGTGCTA
Statistics
Matches: 98, Mismatches: 6, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
93 98 1.00
ACGTcount: A:0.34, C:0.15, G:0.15, T:0.37
Consensus pattern (93 bp):
AAGTATCAATACTTAAGCAATTGTATCGATACATCCTAAGATTGTATCGATACATTAATGATAGT
ATCGATACATTCTAGGTTTTTTACCCAG
Found at i:1168136 original size:21 final size:20
Alignment explanation
Indices: 1168110--1168166 Score: 80
Period size: 20 Copynumber: 2.8 Consensus size: 20
1168100 TACTTAAGCA
1168110 ATTGTATCGATACATCCTAA-G
1 ATTGTATCGATACAT--TAATG
1168131 ATTGTATCGATACATTAATG
1 ATTGTATCGATACATTAATG
*
1168151 ATAGTATCGATACATT
1 ATTGTATCGATACATT
1168167 CTAGGTTTTT
Statistics
Matches: 34, Mismatches: 1, Indels: 3
0.89 0.03 0.08
Matches are distributed among these distances:
19 3 0.09
20 16 0.47
21 15 0.44
ACGTcount: A:0.35, C:0.14, G:0.14, T:0.37
Consensus pattern (20 bp):
ATTGTATCGATACATTAATG
Found at i:1172675 original size:167 final size:167
Alignment explanation
Indices: 1172465--1173059 Score: 592
Period size: 167 Copynumber: 3.6 Consensus size: 167
1172455 GATTTATAAA
* * * * * *
1172465 TTTTAAAATTCATCAAAGAATATTATTTAACTCACAATAAATCA-TTTTCAAAAAATTCCTT-TT
1 TTTTAAAATTCATCAAATATTATTATTTAACTCATATTAAATCAGTTTT-AAAAAATTCATTCCT
* * * *
1172528 ATTTCATTA-ATTTTCCTTTTTTTCCTTGAAATATCTCTTATTTTCAAAATATAGGGTTTTCTAC
65 -TTTCATGAGATTTTCATTTTTTTCCTTG-AATATCTCTTATTTTCAAAAAATAGAGTTTTCTA-
* ** * **
1172592 TTT-GTAATTATTTT-CGGAGGAATTTTTATTGGTTTTTAAT
127 TTTCATAAAGATTTTCCCGAGG-ATTTTTATTGGTTTGAAAT
* *
1172632 TTTTAAAATTCATAAAATATTATTATTTAACTCATATTAAATCAGTTTTTAAAAATTCATTCCTT
1 TTTTAAAATTCATCAAATATTATTATTTAACTCATATTAAATCAGTTTTAAAAAATTCATTCCTT
* * * *
1172697 TTCATGAGTTTTTCATTTTTTTCCTTGAATTTCTCTTTTTTTCAAAAAATTGAGTTTTCTATTTC
66 TTCATGAGATTTTCATTTTTTTCCTTGAATATCTCTTATTTTCAAAAAATAGAGTTTTCTATTTC
* * *
1172762 ATAAAGGTTTTCCCGAGGGTTTTTCTTGGTTTGAAAT
131 ATAAAGATTTTCCCGAGGATTTTTATTGGTTTGAAAT
* * * * * ** **
1172799 TTTTAAAATTCATCAAATATCATCATTTAATTAATATTAAATCAGTTTTGAAATTTTCATTTATT
1 TTTTAAAATTCATCAAATATTATTATTTAACTCATATTAAATCAGTTTTAAAAAATTCATTCCTT
* * * *
1172864 TTCATGAGTTTTTCATTTTTTTCCTTGAATTTCTCTTTTTTTTCAAAAAACCA-AGTTTTCTATT
66 TTCATGAGATTTTCATTTTTTTCCTTGAATATCTC-TTATTTTCAAAAAA-TAGAGTTTTCTATT
* ** * *
1172928 TCATAAAGGTTTTTGCGAGGGTTTTTCTTGGTTTGAAAT
129 TCATAAAGATTTTCCCGAGGATTTTTATTGGTTTGAAAT
* * * * * ** **
1172967 TTTTAAAATTCATCAAATATCATCATTTAATTAATATTAAATCAGTTTTGAAATTTTCATTTATT
1 TTTTAAAATTCATCAAATATTATTATTTAACTCATATTAAATCAGTTTTAAAAAATTCATTCCTT
* *
1173032 TTCATGAGCTTTTTA-TTTTTTCCTTGAA
66 TTCATGAGATTTTCATTTTTTTCCTTGAA
1173060 ATGCCCTGAT
Statistics
Matches: 380, Mismatches: 41, Indels: 14
0.87 0.09 0.03
Matches are distributed among these distances:
166 3 0.01
167 210 0.55
168 167 0.44
ACGTcount: A:0.30, C:0.12, G:0.08, T:0.51
Consensus pattern (167 bp):
TTTTAAAATTCATCAAATATTATTATTTAACTCATATTAAATCAGTTTTAAAAAATTCATTCCTT
TTCATGAGATTTTCATTTTTTTCCTTGAATATCTCTTATTTTCAAAAAATAGAGTTTTCTATTTC
ATAAAGATTTTCCCGAGGATTTTTATTGGTTTGAAAT
Found at i:1172978 original size:168 final size:167
Alignment explanation
Indices: 1172614--1173059 Score: 698
Period size: 168 Copynumber: 2.7 Consensus size: 167
1172604 TTCGGAGGAA
* ** * * * * *
1172614 TTTTTATTGGTTTTTAATTTTTAAAATTCATAAAATATTATTATTTAACTCATATTAAATCAGTT
1 TTTTTCTTGGTTTGAAATTTTTAAAATTCATCAAATATCATCATTTAATTAATATTAAATCAGTT
* ** **
1172679 TTTAAAAATTCATTCCTTTTCATGAGTTTTTCATTTTTTTCCTTGAATTTCTCTTTTTTTCAAAA
66 TTGAAATTTTCATTTATTTTCATGAGTTTTTCATTTTTTTCCTTGAATTTCTCTTTTTTTCAAAA
***
1172744 AATTGAGTTTTCTATTTCATAAAGGTTTTCCCGAGGG
131 AACCAAGTTTTCTATTTCATAAAGGTTTTCCCGAGGG
1172781 TTTTTCTTGGTTTGAAATTTTTAAAATTCATCAAATATCATCATTTAATTAATATTAAATCAGTT
1 TTTTTCTTGGTTTGAAATTTTTAAAATTCATCAAATATCATCATTTAATTAATATTAAATCAGTT
1172846 TTGAAATTTTCATTTATTTTCATGAGTTTTTCATTTTTTTCCTTGAATTTCTCTTTTTTTTCAAA
66 TTGAAATTTTCATTTATTTTCATGAGTTTTTCATTTTTTTCCTTGAATTTCTC-TTTTTTTCAAA
**
1172911 AAACCAAGTTTTCTATTTCATAAAGGTTTTTGCGAGGG
130 AAACCAAGTTTTCTATTTCATAAAGGTTTTCCCGAGGG
1172949 TTTTTCTTGGTTTGAAATTTTTAAAATTCATCAAATATCATCATTTAATTAATATTAAATCAGTT
1 TTTTTCTTGGTTTGAAATTTTTAAAATTCATCAAATATCATCATTTAATTAATATTAAATCAGTT
1173014 TTGAAATTTTCATTTATTTTCATGAGCTTTTT-A-TTTTTTCCTTGAA
66 TTGAAATTTTCATTTATTTTCATGAG-TTTTTCATTTTTTTCCTTGAA
1173060 ATGCCCTGAT
Statistics
Matches: 259, Mismatches: 18, Indels: 4
0.92 0.06 0.01
Matches are distributed among these distances:
167 118 0.46
168 136 0.53
169 5 0.02
ACGTcount: A:0.28, C:0.11, G:0.09, T:0.52
Consensus pattern (167 bp):
TTTTTCTTGGTTTGAAATTTTTAAAATTCATCAAATATCATCATTTAATTAATATTAAATCAGTT
TTGAAATTTTCATTTATTTTCATGAGTTTTTCATTTTTTTCCTTGAATTTCTCTTTTTTTCAAAA
AACCAAGTTTTCTATTTCATAAAGGTTTTCCCGAGGG
Found at i:1173442 original size:50 final size:50
Alignment explanation
Indices: 1173374--1173468 Score: 136
Period size: 50 Copynumber: 1.9 Consensus size: 50
1173364 TCTGGAAAGA
* *
1173374 AAATGTATCGATGCATTTTTTATTATATCAATACATTCTGGGTTTGATCT
1 AAATGTATCGATACATTTTTCATTATATCAATACATTCTGGGTTTGATCT
* * * *
1173424 AAATGTATTGATATATTTTTCATTGTATCGATACATTCTGGGTTT
1 AAATGTATCGATACATTTTTCATTATATCAATACATTCTGGGTTT
1173469 TTGACCCACA
Statistics
Matches: 39, Mismatches: 6, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
50 39 1.00
ACGTcount: A:0.27, C:0.11, G:0.15, T:0.47
Consensus pattern (50 bp):
AAATGTATCGATACATTTTTCATTATATCAATACATTCTGGGTTTGATCT
Found at i:1173503 original size:52 final size:50
Alignment explanation
Indices: 1173399--1173511 Score: 145
Period size: 52 Copynumber: 2.2 Consensus size: 50
1173389 TTTTTTATTA
* * * * * *
1173399 TATCAATACATTCTGGGTTTGATCTAAATGTATTGATATATTTTTCATTG
1 TATCGATACATTCTGGGTTTGACCCAAATGTATTGATACATTCTTCAATG
*
1173449 TATCGATACATTCTGGGTTTTTGACCCACATGTATTGATACATTCTTCAATG
1 TATCGATACATTCTGGG--TTTGACCCAAATGTATTGATACATTCTTCAATG
1173501 TATCGATACAT
1 TATCGATACAT
1173512 CCAATTAAAT
Statistics
Matches: 54, Mismatches: 7, Indels: 2
0.86 0.11 0.03
Matches are distributed among these distances:
50 16 0.30
52 38 0.70
ACGTcount: A:0.27, C:0.15, G:0.14, T:0.43
Consensus pattern (50 bp):
TATCGATACATTCTGGGTTTGACCCAAATGTATTGATACATTCTTCAATG
Found at i:1176575 original size:26 final size:27
Alignment explanation
Indices: 1176546--1176597 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 27
1176536 CCCAATCGAT
**
1176546 GAATCTTTAAACTGC-GCAGACCACGG
1 GAATCTTTAAACAACTGCAGACCACGG
1176572 GAATCTTTAAACAACTGCAGACCACG
1 GAATCTTTAAACAACTGCAGACCACG
1176598 AGATTGCTAT
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
26 13 0.57
27 10 0.43
ACGTcount: A:0.35, C:0.27, G:0.19, T:0.19
Consensus pattern (27 bp):
GAATCTTTAAACAACTGCAGACCACGG
Found at i:1177501 original size:19 final size:19
Alignment explanation
Indices: 1177470--1177506 Score: 58
Period size: 19 Copynumber: 1.9 Consensus size: 19
1177460 TTTGGTAAGT
1177470 GAGAAAAAGAAAGAAAAAA
1 GAGAAAAAGAAAGAAAAAA
1177489 GAGAGAAAA-AAAGAAAAA
1 GAGA-AAAAGAAAGAAAAA
1177507 TCAAGGCAAA
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
19 13 0.76
20 4 0.24
ACGTcount: A:0.78, C:0.00, G:0.22, T:0.00
Consensus pattern (19 bp):
GAGAAAAAGAAAGAAAAAA
Found at i:1192639 original size:9 final size:9
Alignment explanation
Indices: 1192625--1192663 Score: 51
Period size: 9 Copynumber: 4.3 Consensus size: 9
1192615 AAAAGAGAAG
*
1192625 AAAAAATGA
1 AAAAAATCA
*
1192634 AAAAAAACA
1 AAAAAATCA
*
1192643 ACAAAATCA
1 AAAAAATCA
1192652 AAAAAATCA
1 AAAAAATCA
1192661 AAA
1 AAA
1192664 GGGGTCCAGA
Statistics
Matches: 25, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
9 25 1.00
ACGTcount: A:0.79, C:0.10, G:0.03, T:0.08
Consensus pattern (9 bp):
AAAAAATCA
Found at i:1193856 original size:27 final size:26
Alignment explanation
Indices: 1193819--1193881 Score: 67
Period size: 26 Copynumber: 2.4 Consensus size: 26
1193809 CAATTCACCA
*
1193819 TTTGTCAAGAAAT-TATCGTCAAGAACT
1 TTTGTCAAG-AATGT-TCGTCAAAAACT
*
1193846 TTTGTCGAGAATGTTCGTCAAAAAC-
1 TTTGTCAAGAATGTTCGTCAAAAACT
*
1193871 TTTGTTAAGAA
1 TTTGTCAAGAA
1193882 ATTTTTGTCA
Statistics
Matches: 31, Mismatches: 4, Indels: 4
0.79 0.10 0.10
Matches are distributed among these distances:
25 9 0.29
26 13 0.42
27 9 0.29
ACGTcount: A:0.35, C:0.13, G:0.17, T:0.35
Consensus pattern (26 bp):
TTTGTCAAGAATGTTCGTCAAAAACT
Found at i:1193940 original size:28 final size:28
Alignment explanation
Indices: 1193901--1194272 Score: 444
Period size: 28 Copynumber: 13.0 Consensus size: 28
1193891 AATACAACCT
* *
1193901 CTTTTGAAAGCCCACAAGTCAGTGGCAT
1 CTTTTCAAAGCCCACAAGTCAGTGGCAC
* *
1193929 CTTCTCAAAGCCCACAAGTCAGTGGCGTC
1 CTTTTCAAAGCCCACAAGTCAGTGGC-AC
*
1193958 C-TTTCTAAAGCCCACAAGTCAGTGACAC
1 CTTTTC-AAAGCCCACAAGTCAGTGGCAC
*
1193986 C-TTTCGAAAGCCCACAAGTCAGTGGCATT
1 CTTTTC-AAAGCCCACAAGTCAGTGGCA-C
* * *
1194015 CTTTTCAAAGCCCAAAAATGAGTGGCAC
1 CTTTTCAAAGCCCACAAGTCAGTGGCAC
**
1194043 CTTTTCAAAGCTTACAAGTCAGTGGCATC
1 CTTTTCAAAGCCCACAAGTCAGTGGCA-C
* *
1194072 CTTTTAAAAGCCCACAAGTTAGTGGCATC
1 CTTTTCAAAGCCCACAAGTCAGTGGCA-C
* * *
1194101 ATTTTCAAAGCCCATAAGTGAGTGGCAC
1 CTTTTCAAAGCCCACAAGTCAGTGGCAC
1194129 CTTTTCAAAGCCCACAAGTCAGTGGCAC
1 CTTTTCAAAGCCCACAAGTCAGTGGCAC
*
1194157 CCTTTCAAAGCCCACAAGTCAGTGGCAC
1 CTTTTCAAAGCCCACAAGTCAGTGGCAC
* *
1194185 C-TTTCAAAGCCTACAAGTCAGTGGTAC
1 CTTTTCAAAGCCCACAAGTCAGTGGCAC
1194212 CTTTTCAAAGCCCACAAGTCAGTGGCAAC
1 CTTTTCAAAGCCCACAAGTCAGTGGC-AC
**
1194241 CATTTTCAAAGCTCACACAAGTTGGTGGCAC
1 C-TTTTCAAAGC-C-CACAAGTCAGTGGCAC
1194272 C
1 C
1194273 AATGTCTGAG
Statistics
Matches: 297, Mismatches: 37, Indels: 17
0.85 0.11 0.05
Matches are distributed among these distances:
27 25 0.08
28 151 0.51
29 91 0.31
30 14 0.05
31 4 0.01
32 12 0.04
ACGTcount: A:0.30, C:0.28, G:0.19, T:0.24
Consensus pattern (28 bp):
CTTTTCAAAGCCCACAAGTCAGTGGCAC
Found at i:1193996 original size:57 final size:55
Alignment explanation
Indices: 1193901--1194272 Score: 406
Period size: 57 Copynumber: 6.5 Consensus size: 55
1193891 AATACAACCT
* *
1193901 CTTTTGAAAGCCCACAAGTCAGTGGCATCTTCTCAAAGCCCACAAGTCAGTGGCGTC
1 CTTTTCAAAGCCCACAAGTCAGTGGCACCTT-TCAAAGCCCACAAGTCAGTGGC-TC
* *
1193958 C-TTTCTAAAGCCCACAAGTCAGTGACACCTTTCGAAAGCCCACAAGTCAGTGGCATT
1 CTTTTC-AAAGCCCACAAGTCAGTGGCACCTTTC-AAAGCCCACAAGTCAGTGGC-TC
* * * **
1194015 CTTTTCAAAGCCCAAAAATGAGTGGCACCTTTTCAAAGCTTACAAGTCAGTGGCATC
1 CTTTTCAAAGCCCACAAGTCAGTGGCACC-TTTCAAAGCCCACAAGTCAGTGGC-TC
* * * * * *
1194072 CTTTTAAAAGCCCACAAGTTAGTGGCATCATTTTCAAAGCCCATAAGTGAGTGGCAC
1 CTTTTCAAAGCCCACAAGTCAGTGGCA-C-CTTTCAAAGCCCACAAGTCAGTGGCTC
*
1194129 CTTTTCAAAGCCCACAAGTCAGTGGCACCCTTTCAAAGCCCACAAGTCAGTGGCAC
1 CTTTTCAAAGCCCACAAGTCAGTGGCA-CCTTTCAAAGCCCACAAGTCAGTGGCTC
* * *
1194185 C-TTTCAAAGCCTACAAGTCAGTGGTACCTTTTCAAAGCCCACAAGTCAGTGGCAAC
1 CTTTTCAAAGCCCACAAGTCAGTGGCACC-TTTCAAAGCCCACAAGTCAGTGGC-TC
**
1194241 CATTTTCAAAGCTCACACAAGTTGGTGGCACC
1 C-TTTTCAAAGC-C-CACAAGTCAGTGGCACC
1194273 AATGTCTGAG
Statistics
Matches: 269, Mismatches: 34, Indels: 21
0.83 0.10 0.06
Matches are distributed among these distances:
54 2 0.01
55 47 0.17
56 33 0.12
57 135 0.50
58 38 0.14
59 1 0.00
60 13 0.05
ACGTcount: A:0.30, C:0.28, G:0.19, T:0.24
Consensus pattern (55 bp):
CTTTTCAAAGCCCACAAGTCAGTGGCACCTTTCAAAGCCCACAAGTCAGTGGCTC
Found at i:1194133 original size:114 final size:111
Alignment explanation
Indices: 1193901--1194272 Score: 449
Period size: 114 Copynumber: 3.3 Consensus size: 111
1193891 AATACAACCT
* * * *
1193901 CTTTTGAAAGCCCACAAGTCAGTGGCATCTTCTCAAAGCCCACAAGTCAGTGGCGTCCTTTCTAA
1 CTTTTCAAAGCCCACAAGTCAGTGGCACCTTTTCAAAGCCCACAAGTCAGTGGCATCCTTT-TAA
* * *
1193966 AGCCCACAAGTCAGTGACACCTTTCGAAAGCCCACAAGTCAGTGGCATT
65 AGCCCACAAGTCAGTGGCACTTTTC-AAAGCCCACAAGTCAGTGGCA-C
* * * **
1194015 CTTTTCAAAGCCCAAAAATGAGTGGCACCTTTTCAAAGCTTACAAGTCAGTGGCATCCTTTTAAA
1 CTTTTCAAAGCCCACAAGTCAGTGGCACCTTTTCAAAGCCCACAAGTCAGTGGCATCCTTTT-AA
* * *
1194080 AGCCCACAAGTTAGTGGCATCATTTTCAAAGCCCATAAGTGAGTGGCAC
65 AGCCCACAAGTCAGTGGCA-C-TTTTCAAAGCCCACAAGTCAGTGGCAC
* *
1194129 CTTTTCAAAGCCCACAAGTCAGTGGCACCCTTTCAAAGCCCACAAGTCAGTGGCA-CCTTTCAAA
1 CTTTTCAAAGCCCACAAGTCAGTGGCACCTTTTCAAAGCCCACAAGTCAGTGGCATCCTTTTAAA
* *
1194193 GCCTACAAGTCAGTGGTACCTTTTCAAAGCCCACAAGTCAGTGGCAAC
66 GCCCACAAGTCAGTGGCA-CTTTTCAAAGCCCACAAGTCAGTGGC-AC
**
1194241 CATTTTCAAAGCTCACACAAGTTGGTGGCACC
1 C-TTTTCAAAGC-C-CACAAGTCAGTGGCACC
1194273 AATGTCTGAG
Statistics
Matches: 221, Mismatches: 30, Indels: 13
0.84 0.11 0.05
Matches are distributed among these distances:
111 23 0.10
112 22 0.10
113 16 0.07
114 121 0.55
115 35 0.16
116 4 0.02
ACGTcount: A:0.30, C:0.28, G:0.19, T:0.24
Consensus pattern (111 bp):
CTTTTCAAAGCCCACAAGTCAGTGGCACCTTTTCAAAGCCCACAAGTCAGTGGCATCCTTTTAAA
GCCCACAAGTCAGTGGCACTTTTCAAAGCCCACAAGTCAGTGGCAC
Found at i:1195722 original size:20 final size:20
Alignment explanation
Indices: 1195664--1195714 Score: 102
Period size: 20 Copynumber: 2.5 Consensus size: 20
1195654 TAGCCTTTGA
1195664 TCATGCATTTTCACTATGTT
1 TCATGCATTTTCACTATGTT
1195684 TCATGCATTTTCACTATGTT
1 TCATGCATTTTCACTATGTT
1195704 TCATGCATTTT
1 TCATGCATTTT
1195715 TAACATGTCT
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 31 1.00
ACGTcount: A:0.20, C:0.20, G:0.10, T:0.51
Consensus pattern (20 bp):
TCATGCATTTTCACTATGTT
Found at i:1200452 original size:42 final size:42
Alignment explanation
Indices: 1200406--1208491 Score: 1628
Period size: 42 Copynumber: 191.7 Consensus size: 42
1200396 GAGATGAGTT
* *
1200406 AGTCTCCAAGGTAAAAGCTGACAGGCAGACTGAAGGTAAGAA
1 AGTCTCTAAGGTCAAAGCTGACAGGCAGACTGAAGGTAAGAA
* * * * *
1200448 AGTCTCTAGGGTCAAAGCCGAGAGGTAGACTTAAGGGTAA-AGA
1 AGTCTCTAAGGTCAAAGCTGACAGGCAGACTGAA-GGTAAGA-A
* * * * *
1200491 AGTCTCCAAGGTCAAAGCTGACAAGCAGACTTG-AGATGATG-T
1 AGTCTCTAAGGTCAAAGCTGACAGGCAGAC-TGAAGGT-AAGAA
* * *
1200533 AGTCTCTAGGGTCAAAGCTGATAGGCAGACTGAGGGTAAGAA
1 AGTCTCTAAGGTCAAAGCTGACAGGCAGACTGAAGGTAAGAA
* * * *
1200575 AGTCTAC-AGGGTCAAAGCTGACAAGCAGACTTAAGGGTGATG-A
1 AGTCT-CTAAGGTCAAAGCTGACAGGCAGACTGAA-GGT-AAGAA
* * * * * * *
1200618 AGTCTTTAGGGTCAAAACCGATAGGCAGACTTG-AGATGAGGCAA
1 AGTCTCTAAGGTCAAAGCTGACAGGCAGAC-TGAAGGT-AAG-AA
* * * * * * * * **
1200662 A--CTCCAATGTTAAATTCT-ATAAGCAGACTTG-AGATGAGGT
1 AGTCTCTAAGGTCAAA-GCTGACAGGCAGAC-TGAAGGTAAGAA
* * *
1200702 AGTCTCCAAGGTCAAAGCCGACAGGCAAACTGAAGGTAAGAA
1 AGTCTCTAAGGTCAAAGCTGACAGGCAGACTGAAGGTAAGAA
* * * * * *
1200744 AGTCT-TCAAGTTTAAAGTTCACAAGCAGACTTAAAGGTGAAG-A
1 AGTCTCT-AAGGTCAAAGCTGACAGGCAGAC-TGAAGGT-AAGAA
* * * * *
1200787 AGTCTAC-AAGGTTAAA-ATCGATAGGCAAACTTAAGGTAAGAA
1 AGTCT-CTAAGGTCAAAGCT-GACAGGCAGACTGAAGGTAAGAA
* * * * *
1200829 AGTCTCTAGGGTCAAAGCTGATAGGTAGACTTAA-GTTAGAA
1 AGTCTCTAAGGTCAAAGCTGACAGGCAGACTGAAGGTAAGAA
** * * * * * *
1200870 AGTCTAGAGGGTCAAATCCGACAAGCAAACTTAAGGGTGAAG-A
1 AGTCTCTAAGGTCAAAGCTGACAGGCAGACTGAA-GGT-AAGAA
* * * * **
1200913 AGTCTCTAAGGTCAAAGCCGACAAGCAGACCTG-AGATTAGGT
1 AGTCTCTAAGGTCAAAGCTGACAGGCAGA-CTGAAGGTAAGAA
* * * * * *
1200955 AGTCTTTAGGGTCAAAGCTGACAGGTAGACTTG-AGATATCGCA
1 AGTCTCTAAGGTCAAAGCTGACAGGCAGAC-TGAAGGTA-AGAA
* * * * ** *
1200998 A-TCTCCAGGGTCAGAGCTGACCGATAGACTAAAGGTAAGAA
1 AGTCTCTAAGGTCAAAGCTGACAGGCAGACTGAAGGTAAGAA
* * * * * * *
1201039 AGTCTC-CAGTATCACAGCCGACAAGCAGACTTAAGGGTGAA-CA
1 AGTCTCTAAG-GTCAAAGCTGACAGGCAGACTGAA-GGT-AAGAA
* *
1201082 AGTCTC-CAGTGTCAAAGCTGATAGGCAGACTGAAGGTAAGAA
1 AGTCTCTAAG-GTCAAAGCTGACAGGCAGACTGAAGGTAAGAA
* * *
1201124 AGTCT-TTAGCGTCAAAG-TCGACA-ACTAGACTGATGGTAAGAA
1 AGTCTCTAAG-GTCAAAGCT-GACAGGC-AGACTGAAGGTAAGAA
* * * * * **
1201166 AGTCTCT-AGAGTCAAAACTGATAGGTAGACTTG-AGATGAGGC
1 AGTCTCTAAG-GTCAAAGCTGACAGGCAGAC-TGAAGGTAAGAA
** * * * * * **
1201208 AGTCTCTGGGGTTAAAGCTAACAGGTA-ACTTG-AGATGAGGC
1 AGTCTCTAAGGTCAAAGCTGACAGGCAGAC-TGAAGGTAAGAA
* * * * * **
1201249 TGTCTCTAGGGTCAAAGCCGACAAGCAAAAGGAAGGTAAGAA
1 AGTCTCTAAGGTCAAAGCTGACAGGCAGACTGAAGGTAAGAA
* * *
1201291 AGTCTCCAAGGTCAAAGAC-GACAGGCAGACTTAAAGGTAAAAA
1 AGTCTCTAAGGTCAAAG-CTGACAGGCAGAC-TGAAGGTAAGAA
* * * * * * * * **
1201334 AGTCTATAGGGTCAAAACCGACAAGCAGATTTG-AGATGAGGC
1 AGTCTCTAAGGTCAAAGCTGACAGGCAGA-CTGAAGGTAAGAA
* * * * * **
1201376 AGTTTCTAGGGTCGAAGCTGACAGGCAGACT-AGAGATGAGGT
1 AGTCTCTAAGGTCAAAGCTGACAGGCAGACTGA-AGGTAAGAA
* * * * ** *
1201418 AGTCTCCAAGATCAAAG-TCGACAGGTAGGCAAAAGGTGAGAA
1 AGTCTCTAAGGTCAAAGCT-GACAGGCAGACTGAAGGTAAGAA
* * **
1201460 AGTCTCCAAGGTCAAAGCTGACAGGCAGAC--ATAGGATGAGGC
1 AGTCTCTAAGGTCAAAGCTGACAGGCAGACTGA-AGG-TAAGAA
* * * * * **
1201502 AGTCTCTAAGGTCAAAGCTGAAAGACAAACTTAAGATAAGGT
1 AGTCTCTAAGGTCAAAGCTGACAGGCAGACTGAAGGTAAGAA
* * * * **
1201544 AGTCTCTAGGGTCAAAG-TCGATAGGCAAACTAAATATAAGAA
1 AGTCTCTAAGGTCAAAGCT-GACAGGCAGACTGAAGGTAAGAA
* * * * * *
1201586 AGTCTTTAGGGTCAAAG-TCGACTGGCAGATTAAAGGGTGAAGAC
1 AGTCTCTAAGGTCAAAGCT-GACAGGCAGACTGAA-GGT-AAGAA
* * * * *
1201630 A-TCTCCACGGTCAAAGCTGACTGGCAGACTTAAGGTAACAA
1 AGTCTCTAAGGTCAAAGCTGACAGGCAGACTGAAGGTAAGAA
* *
1201671 AGTCTCCAA-GTCAAAG-TCGACTAGG-AGACTTAAGGTAAGAA
1 AGTCTCTAAGGTCAAAGCT-GAC-AGGCAGACTGAAGGTAAGAA
* * * * * **
1201712 AGTCTCTAAGGCCAAAGCTGACAGGTAAACTTG-AGATGAGGC
1 AGTCTCTAAGGTCAAAGCTGACAGGCAGAC-TGAAGGTAAGAA
* * * * *
1201754 AGTCTTTAGGGTCAAAGCTGATAGGCAAATTGAAGGTAAGAA
1 AGTCTCTAAGGTCAAAGCTGACAGGCAGACTGAAGGTAAGAA
* **
1201796 AGTCTAC-AGGGTCAAAG-TCGACAGGCAGACACAAGGGTGAAG-A
1 AGTCT-CTAAGGTCAAAGCT-GACAGGCAGACTGAA-GGT-AAGAA
* * * * * * *
1201839 AGTCTCTATGGTTAAATCTTATAGGCAGACTTAAGGTTAGAA
1 AGTCTCTAAGGTCAAAGCTGACAGGCAGACTGAAGGTAAGAA
* * * * * * **
1201881 AGTCTCCAAGGTCAAAACCGATAGGCAGAGTTGAGATGT--GGC
1 AGTCTCTAAGGTCAAAGCTGACAGGCAGA-CTGA-AGGTAAGAA
* * * * *
1201923 AGTCTCTAGGGTTAAACCTGATAGGCATACTGAAGGTAAGAA
1 AGTCTCTAAGGTCAAAGCTGACAGGCAGACTGAAGGTAAGAA
* *
1201965 AGT-T-TACATGGTCAAAG-TCGACAAGCAGACTTAAGGGTGAAGAA
1 AGTCTCTA-A-GGTCAAAGCT-GACAGGCAGACTGAA-GGT-AAGAA
* * *
1202009 A-TTTCTAAGGTCAAAG-TCGACAGGCAGACTTAGGGTAAGAA
1 AGTCTCTAAGGTCAAAGCT-GACAGGCAGACTGAAGGTAAGAA
* * * * * * * *
1202050 AGTCTCTAGGGTCAACG-TCGATAGGCAAACTTAAGATGAGAC
1 AGTCTCTAAGGTCAAAGCT-GACAGGCAGACTGAAGGTAAGAA
* * * *
1202092 AGTCTCTAAGGTGAAAGCTGATAGGCAGTCT-AAGGGTAAAAA
1 AGTCTCTAAGGTCAAAGCTGACAGGCAGACTGAA-GGTAAGAA
* * * * * **
1202134 AGTCTCTAAGGTGAAAGCCGATAGGCAGACTTG-AGATGAGGC
1 AGTCTCTAAGGTCAAAGCTGACAGGCAGAC-TGAAGGTAAGAA
* * *
1202176 AGTCTCTAAGGTCAAAGCTGAAAGGCAGACTTG-AGATTAAG-T
1 AGTCTCTAAGGTCAAAGCTGACAGGCAGAC-TGAAG-GTAAGAA
* * * *
1202218 AGTCTCTAGGGTCAAAGTCGGTA-A-GCGGACTTAAGGGTGAA-AA
1 AGTCTCTAAGGTCAAAG-CTG-ACAGGCAGACTGAA-GGT-AAGAA
*
1202261 AGTCTCTAAGGTCAAAG-TCGATAGGCAGACTTG-AGGTAAGAA
1 AGTCTCTAAGGTCAAAGCT-GACAGGCAGAC-TGAAGGTAAGAA
* ** * * * * **
1202303 AGTCTCTAGGGTCAAAGCCCACAGGTAAACTTG-AGATGAGGC
1 AGTCTCTAAGGTCAAAGCTGACAGGCAGAC-TGAAGGTAAGAA
* * * * * *
1202345 AGTTTTTAGGGTCAAAG-TCGACAGGTAGACTAAAGGTAAAAA
1 AGTCTCTAAGGTCAAAGCT-GACAGGCAGACTGAAGGTAAGAA
*
1202387 AGTCT-TCAAGGTCAAAGCTGACAGGCAGACTTAAAGGTGAAG-A
1 AGTCTCT-AAGGTCAAAGCTGACAGGCAGAC-TGAAGGT-AAGAA
* * * * *
1202430 AGTCTCCAAGGTCAAAGTTTACAGGCAGACTTAAGGTAAAAA
1 AGTCTCTAAGGTCAAAGCTGACAGGCAGACTGAAGGTAAGAA
* * * * *
1202472 AG-CTCCAGGGTCAAAGCTGACA-GCTAGACTTG-AGATGAGAC
1 AGTCTCTAAGGTCAAAGCTGACAGGC-AGAC-TGAAGGTAAGAA
* ** *
1202513 AGTCTCTAGGGTCAAAGCTG-CAATCAGACAGAAGGTAAGAA
1 AGTCTCTAAGGTCAAAGCTGACAGGCAGACTGAAGGTAAGAA
* **
1202554 AGTCTATCAA-GTCAAAGCCAACTA-GCAGACAT-AATGGTGAAG-A
1 AGTCTCT-AAGGTCAAAGCTGAC-AGGCAGAC-TGAA-GGT-AAGAA
* * * *
1202597 AGTCTTTAGGGTTAAAG-TCGATAGGCAGACTGAAGGTAAGAA
1 AGTCTCTAAGGTCAAAGCT-GACAGGCAGACTGAAGGTAAGAA
* * * * * * * * **
1202639 AGTTTCTATGGTCAAAACAGATAGGTAGAATTGAGATGT--GGC
1 AGTCTCTAAGGTCAAAGCTGACAGGCAG-ACTGA-AGGTAAGAA
* * * * * * * **
1202681 AGTCACCAAGGTCAAGGCTGGCAGACAGACTTG-AGATGAGGC
1 AGTCTCTAAGGTCAAAGCTGACAGGCAGAC-TGAAGGTAAGAA
* * * * * *
1202723 AGTCTCTAGGGTCAAAGATGAAAGGCAGACTTAAGATGAAGTA
1 AGTCTCTAAGGTCAAAGCTGACAGGCAGACTGAAGGT-AAGAA
* * * *
1202766 A-TCTCTAGGGTCAAAGCCGACAGGTAGACTTAAGGGTGAA-AA
1 AGTCTCTAAGGTCAAAGCTGACAGGCAGACTGAA-GGT-AAGAA
* ** *
1202808 AGTCTCCAAGGTCAAAGCCAACAGGCAGACTTAAGGTAAGAA
1 AGTCTCTAAGGTCAAAGCTGACAGGCAGACTGAAGGTAAGAA
* * * ** * * * **
1202850 AGTCTCTAGGGTGAAAGCCGACAGATAAACTTG-AGATGAGGC
1 AGTCTCTAAGGTCAAAGCTGACAGGCAGAC-TGAAGGTAAGAA
* * * *
1202892 AGTCTTTAAGGTCAAAG-TCGATAGACAGACTAAAGGTAAGAA
1 AGTCTCTAAGGTCAAAGCT-GACAGGCAGACTGAAGGTAAGAA
* *
1202934 AGTCTCAAAGGTCAAAGCTGACAGGCAGACTTGAGGGTGAAG-A
1 AGTCTCTAAGGTCAAAGCTGACAGGCAGAC-TGAAGGT-AAGAA
** * *
1202977 AGTCTCTAAGGTCAAAGCCAACAGGCAGACTTAAGGTAAAAA
1 AGTCTCTAAGGTCAAAGCTGACAGGCAGACTGAAGGTAAGAA
* * * * * * * *
1203019 AATTTCTAGGGTCAAAGCCGACAGGTAGACT-AGAGATGAGAC
1 AGTCTCTAAGGTCAAAGCTGACAGGCAGACTGA-AGGTAAGAA
* * * * * *
1203061 AGTTTCTAGGGTCAAAGCT-ACTGTCAGACTAAAGGTATGAA
1 AGTCTCTAAGGTCAAAGCTGACAGGCAGACTGAAGGTAAGAA
* ** *
1203102 AGTCTAC-AGGGTCAAAGCCAATAGGCAGACAT-AAGGGTAA-AGA
1 AGTCT-CTAAGGTCAAAGCTGACAGGCAGAC-TGAA-GGTAAGA-A
* * * * *
1203145 AGTCTCTAGGGTTAAAG-TCGATAGGGAGACTAAAGGTAAGAA
1 AGTCTCTAAGGTCAAAGCT-GACAGGCAGACTGAAGGTAAGAA
* * * ** * * * * * * *
1203187 GGTCTCCAGGGTCAAAATTAATAAGTAGAATTG-AGATGAAG-T
1 AGTCTCTAAGGTCAAAGCTGACAGGCAG-ACTGAAGGT-AAGAA
* * * * * * * *
1203229 AGTCTCCAAGGTTAAAGCTGATAGGTAGACTGGAGATGAGAT
1 AGTCTCTAAGGTCAAAGCTGACAGGCAGACTGAAGGTAAGAA
* * * * * * *
1203271 AGTTTCTAGGGTCAAACCCGATAGGCAAACTAAAGGTAA-AA
1 AGTCTCTAAGGTCAAAGCTGACAGGCAGACTGAAGGTAAGAA
* * * * * **
1203312 AGGTCTCTAGGGTCAAAG-TCGACAGGCAAAGTTG-AGATGAGGCT
1 A-GTCTCTAAGGTCAAAGCT-GACAGGCAGA-CTGAAGGT-AAGAA
* ** * * *
1203356 A-TCTCTAAGGTTAAAGCAAATAGGTAGACTGAAGGTAAAAA
1 AGTCTCTAAGGTCAAAGCTGACAGGCAGACTGAAGGTAAGAA
* * *
1203397 AGTCTCTAAGGTCAAAGCTGGC-CGCAGACTTAAGGGTGAAG-A
1 AGTCTCTAAGGTCAAAGCTGACAGGCAGACTGAA-GGT-AAGAA
* * * * * * **
1203439 AGTCTTTAGGGTTAAAG-TCGATAGGCAGACTTG-AGATGAGGC
1 AGTCTCTAAGGTCAAAGCT-GACAGGCAGAC-TGAAGGTAAGAA
* * * * **
1203481 AGTCTCT-AGAATCAAAGCCGACAGGCAGATCT-AAGATGAGGT
1 AGTCTCTAAG-GTCAAAGCTGACAGGCAGA-CTGAAGGTAAGAA
* * * **
1203523 AGTCTCTAAGGTCAAAG-TGGACAGGCAAACTTGAGATGT-GGCG
1 AGTCTCTAAGGTCAAAGCT-GACAGGCAGAC-TGA-AGGTAAGAA
* * * **
1203566 A-TCTCCAAGGTCAAAG-TCGACAGGCAGACTTG-AGATGAGGT
1 AGTCTCTAAGGTCAAAGCT-GACAGGCAGAC-TGAAGGTAAGAA
* ** * * * * * *
1203607 AGTCTTTTGGGTTAAAGCCGAAAAGCAGACTAGAA-ATAAGGCA
1 AGTCTCTAAGGTCAAAGCTGACAGGCAGACT-GAAGGTAA-GAA
* * *
1203650 A-TCTCTAGGGTCAAAGCTGACAAGCAGACTAAAGGTAAGAA
1 AGTCTCTAAGGTCAAAGCTGACAGGCAGACTGAAGGTAAGAA
* * * * *
1203691 AGTCTCCAGGGTCAAAG-TCGACAAGAAGACTTAAGCGTGAAG-A
1 AGTCTCTAAGGTCAAAGCT-GACAGGCAGACTGAAG-GT-AAGAA
* *
1203734 AGAT-TCCAAGGTCAAA-ATCGACAGGCAGACAT-AAGGTAAGAA
1 AG-TCTCTAAGGTCAAAGCT-GACAGGCAGAC-TGAAGGTAAGAA
* * * *
1203776 AGCCT-TCAAGGTCAAAG-TCGATAGGTAGACTTAAGGTAAGAA
1 AGTCTCT-AAGGTCAAAGCT-GACAGGCAGACTGAAGGTAAGAA
* * * * *
1203818 AGTCT-TCAGGGTCAAAACCGACAAGTAGACAT-AAGGGTGAAG-A
1 AGTCTCT-AAGGTCAAAGCTGACAGGCAGAC-TGAA-GGT-AAGAA
* ** * * **
1203861 AGTCTCCT-AGGCCAAAGCTGACAACCACACTTG--GGATGAGTT
1 AGTCT-CTAAGGTCAAAGCTGACAGGCAGAC-TGAAGG-TAAGAA
* * * *
1203903 AGTCTCCAAGATAAAAGCTGACAGGCATG-TTGAAGGTAAGAA
1 AGTCTCTAAGGTCAAAGCTGACAGGCA-GACTGAAGGTAAGAA
* * * * * *
1203945 AATCTCCACGGTCAAAGCCGAGAGGCAGACTTAAGGGTAA-AGA
1 AGTCTCTAAGGTCAAAGCTGACAGGCAGACTGAA-GGTAAGA-A
* * * * * *
1203988 AGTCTC-CAGGTCAAAG-TCGATAGGTAGACTTGAA-ATGAGGCA
1 AGTCTCTAAGGTCAAAGCT-GACAGGCAGAC-TGAAGGT-AAGAA
* ** *
1204030 A-TCTCTAGGGTCAAAGCTGACAGATAGATTGAAGGTAAGAA
1 AGTCTCTAAGGTCAAAGCTGACAGGCAGACTGAAGGTAAGAA
* * * *
1204071 AGTCTAC-AGGGTCAAAGCCGACAAGCAGACTAAAGGGTGAAG-A
1 AGTCT-CTAAGGTCAAAGCTGACAGGCAGACTGAA-GGT-AAGAA
* * ** * * *
1204114 AGTTTCTAGGGTCAAAGCCAACAGGCAAACTTG-AGATGAAG-C
1 AGTCTCTAAGGTCAAAGCTGACAGGCAGAC-TGAAGGT-AAGAA
* * * ** * **
1204156 AGTATCTAGGGTCAAGGCCAACAGGCAGACT-AGAGATAAGGC
1 AGTCTCTAAGGTCAAAGCTGACAGGCAGACTGA-AGGTAAGAA
* * * * *
1204198 AGTCTCTAAAGTCAAAG-TCGATAGGTAAACTGAAGGTAAAAA
1 AGTCTCTAAGGTCAAAGCT-GACAGGCAGACTGAAGGTAAGAA
* * * * * * *
1204240 AGCCTTTAGGGTTAAAGTTGACAGGCAGACTTAAGGGTGAAG-T
1 AGTCTCTAAGGTCAAAGCTGACAGGCAGACTGAA-GGT-AAGAA
* * * * * *
1204283 GGTCTCGAAGGTTAAAGCAGACAGGCAGACTTAAGGTAGGAA
1 AGTCTCTAAGGTCAAAGCTGACAGGCAGACTGAAGGTAAGAA
* * * * ** * *
1204325 AGTCTC-CAGGATCAATGCTGACAGGTAGACTTAAATTTATAA
1 AGTCTCTAAGG-TCAAAGCTGACAGGCAGACTGAAGGTAAGAA
* * * * *
1204367 AGTCTCCAAGGTCAAAGCCGACAAGCAGACTTAAGGGT-GGAGA
1 AGTCTCTAAGGTCAAAGCTGACAGGCAGACTGAA-GGTAAGA-A
* * * * *
1204410 AGTCTTTAAGGTCAAAG-TCGATAGGCAGACTTG-AGATGATG-G
1 AGTCTCTAAGGTCAAAGCT-GACAGGCAGAC-TGAAGGT-AAGAA
* * * * * *
1204452 AGTCTCTAGGGTCAAAACCGATC-GGCAGACTAAAGATAAGCA
1 AGTCTCTAAGGTCAAAGCTGA-CAGGCAGACTGAAGGTAAGAA
* * * * * *
1204494 AGTGTCTAGGGTCACAGCCGACAGGCAGACTTAATGGTGAA-CA
1 AGTCTCTAAGGTCAAAGCTGACAGGCAGACTGAA-GGT-AAGAA
*** * *
1204537 AGTCTCCGGGGTCAATGCGGACAGGCAGACTGAAGGTAAGAA
1 AGTCTCTAAGGTCAAAGCTGACAGGCAGACTGAAGGTAAGAA
* * * *
1204579 AGTCTCCAAGGTCAAAG-TCGACAAGCAAACTAAAGGTAAGAA
1 AGTCTCTAAGGTCAAAGCT-GACAGGCAGACTGAAGGTAAGAA
* * * * ** * **
1204621 AGTCTCTGAGGTTAAA-ATCGATAACCAGACTTG-AGATAAGGC
1 AGTCTCTAAGGTCAAAGCT-GACAGGCAGAC-TGAAGGTAAGAA
* * * * * * * **
1204663 TGTCTCTAGGGTCAAAGCCGACAGACAGACTTAAGATGAGGT
1 AGTCTCTAAGGTCAAAGCTGACAGGCAGACTGAAGGTAAGAA
* * * ** * * *
1204705 TGTCT-TGAGGGTCAAATCCAACAAGCAAACTGATGGTAAGAA
1 AGTCTCT-AAGGTCAAAGCTGACAGGCAGACTGAAGGTAAGAA
* *
1204747 AGTCTCCAAGGTCAAAGATGACAGGCAGACAT-AAGGGTGAAG-A
1 AGTCTCTAAGGTCAAAGCTGACAGGCAGAC-TGAA-GGT-AAGAA
* * * * **
1204790 AGTCTCCT-AGGTTAAAGCTGACAAGCAGACTTG-AGATGAGTT
1 AGTCT-CTAAGGTCAAAGCTGACAGGCAGAC-TGAAGGTAAGAA
* * * * *
1204832 AGCCTCCAAGGTAAAAGCCGACAGGCAGACTGAAGGTATGAA
1 AGTCTCTAAGGTCAAAGCTGACAGGCAGACTGAAGGTAAGAA
* * * * *
1204874 AATCTCTAAGGTCAAAGCCGAGAGGCAAACTTAAGGGTAA-AGA
1 AGTCTCTAAGGTCAAAGCTGACAGGCAGACTGAA-GGTAAGA-A
* * * *
1204917 AGTCTCTAGGGTCAAAGCTGACAAGTAGAGATG-AGGT-----
1 AGTCTCTAAGGTCAAAGCTGACAGGCAGA-CTGAAGGTAAGAA
* * * *
1204954 AGTGTCT-AGAGTCAAAGCCGACAGGTAAACTGAAGGTAA-AA
1 AGTCTCTAAG-GTCAAAGCTGACAGGCAGACTGAAGGTAAGAA
* * *
1204995 AGTCTAC-AAGGTCAAA-ATCGACAGGCAGATTTAAGGGTGAAG-A
1 AGTCT-CTAAGGTCAAAGCT-GACAGGCAGACTGAA-GGT-AAGAA
* * * *
1205038 AGTCTCT-AGTGTCAAAGCTGACAGGGAGACTTG-AGATGAGGA
1 AGTCTCTAAG-GTCAAAGCTGACAGGCAGAC-TGAAGGTAAGAA
* * * * * * * * * **
1205080 TGTTTCCAAGGCCAAAGATTACAGGTAGAGT-AGAGATAAGGC
1 AGTCTCTAAGGTCAAAGCTGACAGGCAGACTGA-AGGTAAGAA
* * *
1205122 GGTCTCTAAGATCAAAGCTGACAGGCA-ACTGAAAGTAAGAA
1 AGTCTCTAAGGTCAAAGCTGACAGGCAGACTGAAGGTAAGAA
* * * *
1205163 AGTCTCT-AGTGTTAAAGCCGACAGGCAGATTTAAGGGTGAAG-A
1 AGTCTCTAAG-GTCAAAGCTGACAGGCAGACTGAA-GGT-AAGAA
* * ** * *
1205206 AGTCTCCAAGGTTAAAGCCAATAGGCAGAAAT-AAGGTAAGAA
1 AGTCTCTAAGGTCAAAGCTGACAGGCAG-ACTGAAGGTAAGAA
* * *** *
1205248 AGTCTCTAGGGACAAAGCTGGA-AATTAGACTTAAGTGTGAAG-A
1 AGTCTCTAAGGTCAAAGCT-GACAGGCAGACTGAAG-GT-AAGAA
* * * * * * *
1205291 AGTCTCCAGGGTCAAAG-TCGACAGGCAGGCTTAAGATGAGGCA
1 AGTCTCTAAGGTCAAAGCT-GACAGGCAGACTGAAGGT-AAGAA
* * * **
1205334 A-TCTCTCGAGGTC-AAG-TCGAC-GAGCAGACTTG-AGATGAGGC
1 AGTCTCT-AAGGTCAAAGCT-GACAG-GCAGAC-TGAAGGTAAGAA
* ** * * *
1205375 AGTCTCCAAGGTCAAAATTGATC-GGTAGACTAAAAGTAAGAA
1 AGTCTCTAAGGTCAAAGCTGA-CAGGCAGACTGAAGGTAAGAA
* * ** *
1205417 AGTCTCT-AGTGTCACAGCCGATGGGCAGACAT-AAGGGTGAA-CA
1 AGTCTCTAAG-GTCAAAGCTGACAGGCAGAC-TGAA-GGT-AAGAA
* * *
1205460 AGTCTC-AAGGTCAAAGCTGATAGGCAAACTTAAGGTAAGAA
1 AGTCTCTAAGGTCAAAGCTGACAGGCAGACTGAAGGTAAGAA
* * * * *
1205501 AGTCTCTAGGGTCAAAGCTAACAAGCAGACTGGAGGTAAAAA
1 AGTCTCTAAGGTCAAAGCTGACAGGCAGACTGAAGGTAAGAA
* * * * * * * **
1205543 AGTCTC-CAGGTTCAAAACCGATATGCAGACTTG-AGATGAGGC
1 AGTCTCTAAGG-TCAAAGCTGACAGGCAGAC-TGAAGGTAAGAA
* * * * * * * * * **
1205585 ATTTTGTAGGGTCAAAACCGATAGGCAGACTTG-AGATGAGGC
1 AGTCTCTAAGGTCAAAGCTGACAGGCAGAC-TGAAGGTAAGAA
* * * * * * *
1205627 TGTCTCCAAAGTCAAAGCTGACAAGCAAATTGATGGTAAGAA
1 AGTCTCTAAGGTCAAAGCTGACAGGCAGACTGAAGGTAAGAA
* * * * * * * * **
1205669 CGTCTCCAAGGT-TATGGTCGATAGGCAGACTTG-AGATGAGGT
1 AGTCTCTAAGGTCAAAGCT-GACAGGCAGAC-TGAAGGTAAGAA
* * * * * * * * * **
1205711 AGTCTCCAGGGTCATAGCCGATAGGAAGACTTAAGATGAGTT
1 AGTCTCTAAGGTCAAAGCTGACAGGCAGACTGAAGGTAAGAA
* * * * **
1205753 AGTTTCTAGGGTCAAAGC-GAACAAGCAGACTTGAGATGT--GGC
1 AGTCTCTAAGGTCAAAGCTG-ACAGGCAGAC-TGA-AGGTAAGAA
* * * *
1205795 AGTCTCCAAGGTTAAAGCCGACAAGCAGACT-AATGGTAAGAA
1 AGTCTCTAAGGTCAAAGCTGACAGGCAGACTGAA-GGTAAGAA
* * * * * *
1205837 AGTCTCTAGGGTCAAAGCCGATAGGTAGACTTAAGGGTAAAAA
1 AGTCTCTAAGGTCAAAGCTGACAGGCAGACTGAA-GGTAAGAA
* * * * * * * * * *
1205880 AATCTCCAGGGTCAAAG-TCGATAAGTAAACTTATGGTAGGAA
1 AGTCTCTAAGGTCAAAGCT-GACAGGCAGACTGAAGGTAAGAA
* * * * * **
1205922 AGTCTCTAGGGTCAAAG-TCGATAGGCAAACTTG-AGATGAGGT
1 AGTCTCTAAGGTCAAAGCT-GACAGGCAGAC-TGAAGGTAAGAA
* * * *
1205964 AGTCTCCAAGGTGAAAGCTGACAGGCAGACTAAAGGTAAAAA
1 AGTCTCTAAGGTCAAAGCTGACAGGCAGACTGAAGGTAAGAA
* ** * *
1206006 AGTCTCCT-GGGTCAAAATTGACAAGCAGACTTAAGGGTGAAG-A
1 AGTCT-CTAAGGTCAAAGCTGACAGGCAGACTGAA-GGT-AAGAA
* * * * ** * * **
1206049 AGTCTCGAGGGTTAAAGCTAACAAAC-GAACTTG-AGATATGGC
1 AGTCTCTAAGGTCAAAGCTGACAGGCAG-AC-TGAAGGTAAGAA
* * * * * * *
1206091 AGTCTCCCAAGGTCAAAACCGATAAGCAGACTTG-AGATGAGACA
1 AGTCT-CTAAGGTCAAAGCTGACAGGCAGAC-TGAAGGTAAGA-A
* * * * * **
1206135 A-TCTCTAGGGTCAAAGCCGATAGGCAAACTTG-AGATAAGGT
1 AGTCTCTAAGGTCAAAGCTGACAGGCAGAC-TGAAGGTAAGAA
* * * * **
1206176 AGTCT-TTAGAGTCAAAGCCGACAGGCAGACTTG-AGATGAGGT
1 AGTCTCTAAG-GTCAAAGCTGACAGGCAGAC-TGAAGGTAAGAA
* * ** *
1206218 AGTCTCTAAGGTCAAAGCCGACCGATAGACTGAAGATAAGAA
1 AGTCTCTAAGGTCAAAGCTGACAGGCAGACTGAAGGTAAGAA
* * * *
1206260 AGTCTTTAATGTCAAAG-TCGACAAGCAGACTAAAGGTAAGAA
1 AGTCTCTAAGGTCAAAGCT-GACAGGCAGACTGAAGGTAAGAA
* * * * * * * * **
1206302 AGTCTC-CAGGATCAAAACTGATAGGTATACTTAAGATGAGGT
1 AGTCTCTAAGG-TCAAAGCTGACAGGCAGACTGAAGGTAAGAA
* * * * * * ** * * *
1206344 AGGCTCCATGGTCAAAGCCGATAAGTGGACTTG-AGATGAGAT
1 AGTCTCTAAGGTCAAAGCTGACAGGCAGAC-TGAAGGTAAGAA
* * * * * *
1206386 AGTCTCGAAGTTCAAAGCCGATAGAC-GAACTGAAGGTCAGAA
1 AGTCTCTAAGGTCAAAGCTGACAGGCAG-ACTGAAGGTAAGAA
* * * * *
1206428 AGTCTCCAAGGTCAAAGCTGATAGGCAGACTTG-AGTTGAGGA
1 AGTCTCTAAGGTCAAAGCTGACAGGCAGAC-TGAAGGTAAGAA
* * * ** *
1206470 TGTCTCCAAGGTTAAAGCCAATAGGCAGACTGAAGGTAAGAA
1 AGTCTCTAAGGTCAAAGCTGACAGGCAGACTGAAGGTAAGAA
* * * *
1206512 AGTCTCTAGGGTCAAAGCCGACCA--CAAACTTAAGGGTGAAG-A
1 AGTCTCTAAGGTCAAAGCTGA-CAGGCAGACTGAA-GGT-AAGAA
* * * * * * * * *
1206554 AGTCTCCAGGGTTAAAGCCGATAGGCAGACTTAAGATGAGGCA
1 AGTCTCTAAGGTCAAAGCTGACAGGCAGACTGAAGGT-AAGAA
* * * * * **
1206597 AGTCTCT-AGGTTCAAAGCCGATAGGCAAACCT-AAGATGAGGT
1 AGTCTCTAAGG-TCAAAGCTGACAGGCAGA-CTGAAGGTAAGAA
* * * * * **
1206639 AGTCTCTAAGGTCAAAACGGGCAGGCAAACTTGAGATGT--GGC
1 AGTCTCTAAGGTCAAAGCTGACAGGCAGAC-TGA-AGGTAAGAA
* * * * *
1206681 GGTCT-TCAAGGTTAAAGTTGACAAGCAGACTGAAGGGAAGAA
1 AGTCTCT-AAGGTCAAAGCTGACAGGCAGACTGAAGGTAAGAA
** * * * *
1206723 AGT-T-TACATGGTCAAAGCCAACAAGCAAACTTATGGGTGAAGAA
1 AGTCTCTA-A-GGTCAAAGCTGACAGGCAGACTGA-AGGT-AAGAA
* * * * *
1206767 A-TCTCTAGGGTCAAAGTTGACAGGTAGATTTATA-GTAAGAA
1 AGTCTCTAAGGTCAAAGCTGACAGGCAGACTGA-AGGTAAGAA
* * * * * * * *
1206808 AGTCTCTAGGGTAAAAGCCGATAGGCAAACTTG-AGATGAGAT
1 AGTCTCTAAGGTCAAAGCTGACAGGCAGAC-TGAAGGTAAGAA
* * * **
1206850 AGTCTAC-AAGGTCAAAGCCGACAGGCAGACTTG-AGATGAGGT
1 AGTCT-CTAAGGTCAAAGCTGACAGGCAGAC-TGAAGGTAAGAA
* * * * * **
1206892 AGTCTCTAAGGTCAAAGCCGAAAGGCAGACTTAAGATGAGGC
1 AGTCTCTAAGGTCAAAGCTGACAGGCAGACTGAAGGTAAGAA
* *
1206934 AGTCTTTAAGGTCAAAGCTGACAGGCAGACTAAAGGTAAGAA
1 AGTCTCTAAGGTCAAAGCTGACAGGCAGACTGAAGGTAAGAA
* * ** * *
1206976 AGTCTCCAACGTCAAAGCCCAAAGGCAGACTTAAAGGTGAAG-A
1 AGTCTCTAAGGTCAAAGCTGACAGGCAGAC-TGAAGGT-AAGAA
* * * *
1207019 AGT-TTTCAAGGTCAAAGCCGACAGGCAGACTTAAGATAAGAA
1 AGTCTCT-AAGGTCAAAGCTGACAGGCAGACTGAAGGTAAGAA
* * * * *
1207061 AGCCTC-AATGGTCAAAGCTGACAAGTAGACTTAAGGTAAGAT
1 AGTCTCTAA-GGTCAAAGCTGACAGGCAGACTGAAGGTAAGAA
* * * * *
1207103 AG-C-CGTCAGGATCAAAACCGATAGGTAGACAT-AAGGGTGAAG-A
1 AGTCTC-TAAGG-TCAAAGCTGACAGGCAGAC-TGAA-GGT-AAGAA
** * * * * **
1207146 AGTCTCTTGGGTTAAAGCTGACAAGCAGACTTG-AGATGAGTT
1 AGTCTCTAAGGTCAAAGCTGACAGGCAGAC-TGAAGGTAAGAA
* *
1207188 AGTCTCTAAGGTAAAAGCTGACAAGCAGACTGAAGGTAAGAA
1 AGTCTCTAAGGTCAAAGCTGACAGGCAGACTGAAGGTAAGAA
* * * * *
1207230 AGTCTCTAAGGTCAAAGTTAAGAGGCAAACTTAAGGGTAA-AGA
1 AGTCTCTAAGGTCAAAGCTGACAGGCAGACTGAA-GGTAAGA-A
* * * * * * * **
1207273 AGCCTCGAAGGTCAAAGCCGAGAGTCAGACTTG-AGATGAGGT
1 AGTCTCTAAGGTCAAAGCTGACAGGCAGAC-TGAAGGTAAGAA
* * * *
1207315 AGTCTCTAGGGTCAAAGCTAACAAGCAGACTGAGGGTAAGAA
1 AGTCTCTAAGGTCAAAGCTGACAGGCAGACTGAAGGTAAGAA
* * * * * * *
1207357 AGTCTATAGGGTCAAAGCTGAAAGGCAAACTTAAGGGT-GGTGA
1 AGTCTCTAAGGTCAAAGCTGACAGGCAGACTGAA-GGTAAG-AA
* * * * * **
1207400 AGTCTCTAGGGTCAAAGCTGATAGGAAGACTTG-AGATGAGGC
1 AGTCTCTAAGGTCAAAGCTGACAGGCAGAC-TGAAGGTAAGAA
* * * * * **
1207442 AGTCTCCAATGTC-AAGCCGACAGGCAGACTTG-AGATGAGGC
1 AGTCTCTAAGGTCAAAGCTGACAGGCAGAC-TGAAGGTAAGAA
* * * * *
1207483 AGTCT-TCAGGTTAAAGCCGACAAGCAAACTGAAGGTAAGAA
1 AGTCTCTAAGGTCAAAGCTGACAGGCAGACTGAAGGTAAGAA
* * * **
1207524 AGTCTCCAAGTTTAAAGCCAACAGGCAGACAT-AAGGGTGAAG-A
1 AGTCTCTAAGGTCAAAGCTGACAGGCAGAC-TGAA-GGT-AAGAA
* * * * * * * *
1207567 AGTCTCCAAGGTTAAGGCCGATAGACAGACTTAAGGCAAGAA
1 AGTCTCTAAGGTCAAAGCTGACAGGCAGACTGAAGGTAAGAA
* * * * * * *
1207609 AGTCTCCAAGGTTAAATCTGACTGGTAGACTTAAGGTTAGAA
1 AGTCTCTAAGGTCAAAGCTGACAGGCAGACTGAAGGTAAGAA
* * * * *
1207651 AGTCTC-CAGAGTCAAAGCCGACAAGCAGACTTAGGGGTGAAG-A
1 AGTCTCTAAG-GTCAAAGCTGACAGGCAGACTGA-AGGT-AAGAA
* * * * * **
1207694 AGTCTC-CAGAGTCAAAGC-CAGAGGCAGACTTGAA-ATGAGGT
1 AGTCTCTAAG-GTCAAAGCTGACAGGCAGAC-TGAAGGTAAGAA
* * * * * * *
1207735 AGTCTCCAAAGTCAAAGCCGATAGGCAGACTTG-AGATGAGGCA
1 AGTCTCTAAGGTCAAAGCTGACAGGCAGAC-TGAAGGT-AAGAA
* * *
1207778 A-TCTCCAAGGTCAAACCTGACTGGCAGACTGAAGGTAAGAA
1 AGTCTCTAAGGTCAAAGCTGACAGGCAGACTGAAGGTAAGAA
* ** * * *
1207819 AGTCTCT-AGTGGCACAA-CCAACAGGCAAACTTAAGGTGAA-CA
1 AGTCTCTAAG-GTCA-AAGCTGACAGGCAGACTGAAGGT-AAGAA
* * * * ** *
1207861 AGTCTCCAAGTTTC-AAGCCGATAGATAAACTGAAGGTAAGAA
1 AGTCTCTAAG-GTCAAAGCTGACAGGCAGACTGAAGGTAAGAA
* * * ** * * * *
1207903 ACG-CTCCAGGGTCAAAGCCGGTAAGCAGACTAAAAGTAAAAA
1 A-GTCTCTAAGGTCAAAGCTGACAGGCAGACTGAAGGTAAGAA
* * * * * ** * * **
1207945 AGTCTCTAGGGTCAAAACCGACAAGTAGACTTTAGATGAGGC
1 AGTCTCTAAGGTCAAAGCTGACAGGCAGACTGAAGGTAAGAA
* * * * * * *
1207987 TGTCTCTAAGGTTAATGCCGACAAGCAAAATGAAGGTAAGAA
1 AGTCTCTAAGGTCAAAGCTGACAGGCAGACTGAAGGTAAGAA
* * * * *
1208029 AGTCTCCAAGGTCAAAGATGATAGGCAGATTTAATGGTGAA-AA
1 AGTCTCTAAGGTCAAAGCTGACAGGCAGACTGAA-GGT-AAGAA
* * * * **
1208072 AGTCTCTAAGGTCATCTAGGGTCAAAGCTGACAGGTAGACTTAAGATGAGGC
1 AGTCTC-----T-A---A-GGTCAAAGCTGACAGGCAGACTGAAGGTAAGAA
* * * * * * **
1208124 AGTCTCTAGGGTCAAAGCCGACAAGTAGACT-AGAGATGAGGT
1 AGTCTCTAAGGTCAAAGCTGACAGGCAGACTGA-AGGTAAGAA
* * * * * * *
1208166 AGTCTCCAAGATCAAAGCCGACAAGTAGGCAGAAGGTAAGAA
1 AGTCTCTAAGGTCAAAGCTGACAGGCAGACTGAAGGTAAGAA
* * * **
1208208 AGTCTCTAGGGTCAAAGCTGACAGGCAGACTTG-AGATGAGGT
1 AGTCTCTAAGGTCAAAGCTGACAGGCAGAC-TGAAGGTAAGAA
* * * * * *
1208250 AGTCTCTAGGGTCAAAGCCGA-ACGACAAACTTG-AGATAAGGCA
1 AGTCTCTAAGGTCAAAGCTGACA-GGCAGAC-TGAAGGTAA-GAA
** * * *
1208293 A-TCTCTGGGGTCAAAG-TCGACAGGCAGGCTAAATGTAAGAA
1 AGTCTCTAAGGTCAAAGCT-GACAGGCAGACTGAAGGTAAGAA
* ** * * *
1208334 AGTCTCTAGGGTCATGGCCGACAGGCAAACTTAAGGGTGAAG-A
1 AGTCTCTAAGGTCAAAGCTGACAGGCAGACTGAA-GGT-AAGAA
* * * * *
1208377 AGTCTCCAAGGTCAAAGCCGATAGGCAGACTTAAGGTAATAA
1 AGTCTCTAAGGTCAAAGCTGACAGGCAGACTGAAGGTAAGAA
* * * *
1208419 AGTCTCTAGGGTCAAAG-TCGACTGGAAGACTTAAGGTAAGAA
1 AGTCTCTAAGGTCAAAGCT-GACAGGCAGACTGAAGGTAAGAA
* *
1208461 AGTCTCT-AGGATCAAAGCTGATAGGTAGACT
1 AGTCTCTAAGG-TCAAAGCTGACAGGCAGACT
1208492 TGAAATGAGG
Statistics
Matches: 5949, Mismatches: 1606, Indels: 978
0.70 0.19 0.11
Matches are distributed among these distances:
36 3 0.00
37 26 0.00
39 1 0.00
40 33 0.01
41 578 0.10
42 3864 0.65
43 1273 0.21
44 131 0.02
45 6 0.00
46 1 0.00
47 1 0.00
49 1 0.00
51 1 0.00
52 9 0.00
53 21 0.00
ACGTcount: A:0.36, C:0.17, G:0.27, T:0.20
Consensus pattern (42 bp):
AGTCTCTAAGGTCAAAGCTGACAGGCAGACTGAAGGTAAGAA
Found at i:1200559 original size:127 final size:127
Alignment explanation
Indices: 1200328--1208592 Score: 1970
Period size: 127 Copynumber: 65.3 Consensus size: 127
1200318 TACTGAAATA
* * ** * *
1200328 AGGGTCAAAGCCGACAGGTAGA-TATAAGGGTGAAGAAGTCTCTTGGGTCAAAGCTAACAAGCAG
1 AGGGTCAAAGCTGACAGGCAGACT-TAAGGGTGAAGAAGTCTCTAAGGTCAAAGCTGACAGGCAG
* * * *
1200392 ACTTGAGATG-AGTTAGTCTCCAAGGTAAAAGCTGACAGGCAGACTGAAGGTAAGAAAGTCTCT
65 ACTTGAGATGAAG-AAGTCTCTAGGGTCAAAGCTGACAGGCAGACTGAAGGTAAGAAAGTCTCT
* * * * * *
1200455 AGGGTCAAAGCCGAGAGGTAGACTTAAGGGTAAAGAAGTCTCCAAGGTCAAAGCTGACAAGCAGA
1 AGGGTCAAAGCTGACAGGCAGACTTAAGGGTGAAGAAGTCTCTAAGGTCAAAGCTGACAGGCAGA
* * * *
1200520 CTTGAGATGATGTAGTCTCTAGGGTCAAAGCTGATAGGCAGACTGAGGGTAAGAAAGTCTAC-
66 CTTGAGATGAAGAAGTCTCTAGGGTCAAAGCTGACAGGCAGACTGAAGGTAAGAAAGTCT-CT
* * * * * * *
1200582 AGGGTCAAAGCTGACAAGCAGACTTAAGGGTGATGAAGTCTTTAGGGTCAAAACCGATAGGCAGA
1 AGGGTCAAAGCTGACAGGCAGACTTAAGGGTGAAGAAGTCTCTAAGGTCAAAGCTGACAGGCAGA
* * * ** * * * * * * ** *
1200647 CTTGAGATGAGGCAA-ACTCCAATGTTAAATTCT-ATAAGCAGACTTG-AGATGAGGTAGTCTCC
66 CTTGAGATGAAG-AAGTCTCTAGGGTCAAA-GCTGACAGGCAGAC-TGAAGGTAAGAAAGTCTCT
* * * * * * * * *
1200709 AAGGTCAAAGCCGACAGGCAAACTGAA-GGT-AAGAAAGTCT-TCAAGTTTAAAGTTCACAAGCA
1 AGGGTCAAAGCTGACAGGCAGACTTAAGGGTGAAG-AAGTCTCT-AAGGTCAAAGCTGACAGGCA
* * * * * * * * *
1200771 GACTTAAAGGTGAAGAAGTCTACAAGGTTAAAATC-GATAGGCAAACTTAAGGTAAGAAAGTCTC
64 GACTT-GAGATGAAGAAGTCT-CTAGGGTCAAAGCTGACAGGCAGACTGAAGGTAAGAAAGTCTC
1200835 T
127 T
* * * ** * * * * *
1200836 AGGGTCAAAGCTGATAGGTAGACTTAA--GT-TAGAAAGTCTAGAGGGTCAAATCCGACAAGCAA
1 AGGGTCAAAGCTGACAGGCAGACTTAAGGGTGAAG-AAGTCTCTAAGGTCAAAGCTGACAGGCAG
* * * * * * * ** *
1200898 ACTTAAGGGTGAAGAAGTCTCTAAGGTCAAAGCCGACAAGCAGACCTG-AGATTAGGTAGTCTTT
65 ACTTGA-GATGAAGAAGTCTCTAGGGTCAAAGCTGACAGGCAGA-CTGAAGGTAAGAAAGTCTCT
* * * * * * * * **
1200962 AGGGTCAAAGCTGACAGGTAGACTTGA-GAT-ATCGCAA-TCTCCAGGGTCAGAGCTGACCGATA
1 AGGGTCAAAGCTGACAGGCAGACTTAAGGGTGA-AG-AAGTCTCTAAGGTCAAAGCTGACAGGCA
** * * ** * * * * *
1201024 GACTAAAGGT-AAGAAAGTCTCCAGTATCACAGCCGACAAGCAGACTTAAGGGTGAA-CAAGTCT
64 GACTTGAGATGAAG-AAGTCTCTAGGGTCAAAGCTGACAGGCAGACTGAA-GGT-AAGAAAGTCT
*
1201087 CC
126 CT
* * * * *
1201089 AGTGTCAAAGCTGATAGGCAGACTGAA-GGT-AAGAAAGTCT-TTAGCGTCAAAG-TCGACA-AC
1 AGGGTCAAAGCTGACAGGCAGACTTAAGGGTGAAG-AAGTCTCTAAG-GTCAAAGCT-GACAGGC
* * * * * * * **
1201149 TAGAC-TGATGGT-AAGAAAGTCTCTAGAGTCAAAACTGATAGGTAGACTTG-AGATGAGGCAGT
63 -AGACTTGA-GATGAAG-AAGTCTCTAGGGTCAAAGCTGACAGGCAGAC-TGAAGGTAAGAAAGT
1201211 CTCT
124 CTCT
* * * * * * * ** * * *
1201215 GGGGTTAAAGCTAACAGGTA-ACTTGA-GATGAGGCTGTCTCTAGGGTCAAAGCCGACAAGCA-A
1 AGGGTCAAAGCTGACAGGCAGACTTAAGGGTGAAGAAGTCTCTAAGGTCAAAGCTGACAGGCAGA
*** * * * * * *
1201277 AAGGA-AGGTAAGAAAGTCTCCAAGGTCAAAGAC-GACAGGCAGACTTAAAGGTAAAAAAGTCTA
66 CTTGAGATG-AAG-AAGTCTCTAGGGTCAAAG-CTGACAGGCAGAC-TGAAGGTAAGAAAGTCTC
1201340 T
127 T
* * * * * * * * * * *
1201341 AGGGTCAAAACCGACAAGCAGATTTGA-GATGAGGCAGTTTCTAGGGTCGAAGCTGACAGGCAGA
1 AGGGTCAAAGCTGACAGGCAGACTTAAGGGTGAAGAAGTCTCTAAGGTCAAAGCTGACAGGCAGA
* * * * * * * * ** * *
1201405 CTAGAGATGAGGTAGTCTCCAAGATCAAAG-TCGACAGGTAGGCAAAAGGTGAGAAAGTCTCC
66 CTTGAGATGAAGAAGTCTCTAGGGTCAAAGCT-GACAGGCAGACTGAAGGTAAGAAAGTCTCT
* * * * * * * *
1201467 AAGGTCAAAGCTGACAGGCAGACAT-AGGATGAGGCAGTCTCTAAGGTCAAAGCTGAAAGACAAA
1 AGGGTCAAAGCTGACAGGCAGACTTAAGGGTGAAGAAGTCTCTAAGGTCAAAGCTGACAGGCAGA
* * * * * ** *
1201531 CTTAAGAT-AAGGTAGTCTCTAGGGTCAAAG-TCGATAGGCAAACTAAATATAAGAAAGTCTTT
66 CTTGAGATGAA-GAAGTCTCTAGGGTCAAAGCT-GACAGGCAGACTGAAGGTAAGAAAGTCTCT
* * * *
1201593 AGGGTCAAAG-TCGACTGGCAGA-TTAAAGGGTGAAGACA-TCTCCACGGTCAAAGCTGACTGGC
1 AGGGTCAAAGCT-GACAGGCAGACTT-AAGGGTGAAGA-AGTCTCTAAGGTCAAAGCTGACAGGC
* * * * * *
1201655 AGACTTAAGGT-AACAAAGTCTCCA-AGTCAAAG-TCGACTAGG-AGACTTAAGGTAAGAAAGTC
63 AGACTTGAGATGAA-GAAGTCTCTAGGGTCAAAGCT-GAC-AGGCAGACTGAAGGTAAGAAAGTC
1201716 TCT
125 TCT
* * * * * * * * * * *
1201719 AAGGCCAAAGCTGACAGGTAAACTTGA-GATGAGGCAGTCTTTAGGGTCAAAGCTGATAGGCA-A
1 AGGGTCAAAGCTGACAGGCAGACTTAAGGGTGAAGAAGTCTCTAAGGTCAAAGCTGACAGGCAGA
* * **
1201782 ATTGA-AGGTAAGAAAGTCTAC-AGGGTCAAAG-TCGACAGGCAGACACAAGGGTGAAG-AAGTC
66 CTTGAGATG-AAG-AAGTCT-CTAGGGTCAAAGCT-GACAGGCAGACTGAA-GGT-AAGAAAGTC
1201843 TCT
125 TCT
* * * * * * * * * *
1201846 ATGGTTAAATCTTATAGGCAGACTTAA-GGT-TAGAAAGTCTCCAAGGTCAAAACCGATAGGCAG
1 AGGGTCAAAGCTGACAGGCAGACTTAAGGGTGAAG-AAGTCTCTAAGGTCAAAGCTGACAGGCAG
* ** * * * * * *
1201909 AGTTGAGATGTGGCAGTCTCTAGGGTTAAACCTGATAGGCATACTGAAGGTAAGAAAGTTTAC-
65 ACTTGAGATGAAGAAGTCTCTAGGGTCAAAGCTGACAGGCAGACTGAAGGTAAGAAAGTCT-CT
* * * *
1201972 ATGGTCAAAG-TCGACAAGCAGACTTAAGGGTGAAGAAATTTCTAAGGTCAAAG-TCGACAGGCA
1 AGGGTCAAAGCT-GACAGGCAGACTTAAGGGTGAAGAAGTCTCTAAGGTCAAAGCT-GACAGGCA
* * * * * * * *
1202035 GACTT-AG-GGTAAGAAAGTCTCTAGGGTCAACG-TCGATAGGCAAACTTAAGATGAGACAGTCT
64 GACTTGAGATG-AAG-AAGTCTCTAGGGTCAAAGCT-GACAGGCAGACTGAAGGTAAGAAAGTCT
1202097 CT
126 CT
* * * * * * * * *
1202099 AAGGTGAAAGCTGATAGGCAGTC-TAAGGGTAAAAAAGTCTCTAAGGTGAAAGCCGATAGGCAGA
1 AGGGTCAAAGCTGACAGGCAGACTTAAGGGTGAAGAAGTCTCTAAGGTCAAAGCTGACAGGCAGA
* * * * * *
1202163 CTTGAGATGAGGCAGTCTCTAAGGTCAAAGCTGAAAGGCAGACTTG-AGATTAAG-TAGTCTCT
66 CTTGAGATGAAGAAGTCTCTAGGGTCAAAGCTGACAGGCAGAC-TGAAG-GTAAGAAAGTCTCT
* * * *
1202225 AGGGTCAAAGTCGGTA-A-GCGGACTTAAGGGTGAAAAAGTCTCTAAGGTCAAAG-TCGATAGGC
1 AGGGTCAAAG-CTG-ACAGGCAGACTTAAGGGTGAAGAAGTCTCTAAGGTCAAAGCT-GACAGGC
* ** * * * * ** *
1202287 AGACTTGAGGT-AAGAAAGTCTCTAGGGTCAAAGCCCACAGGTAAACTTG-AGATGAGGCAGTTT
63 AGACTTGAGATGAAG-AAGTCTCTAGGGTCAAAGCTGACAGGCAGAC-TGAAGGTAAGAAAGTCT
*
1202350 TT
126 CT
* * * *
1202352 AGGGTCAAAG-TCGACAGGTAGAC-TAAAGGTAAAAAAGTCT-TCAAGGTCAAAGCTGACAGGCA
1 AGGGTCAAAGCT-GACAGGCAGACTTAAGGGTGAAGAAGTCTCT-AAGGTCAAAGCTGACAGGCA
* * * * * * * * *
1202414 GACTTAAAGGTGAAGAAGTCTCCAAGGTCAAAGTTTACAGGCAGACTTAAGGTAAAAAAG-CTCC
64 GACTT-GAGATGAAGAAGTCTCTAGGGTCAAAGCTGACAGGCAGACTGAAGGTAAGAAAGTCTCT
* * * **
1202478 AGGGTCAAAGCTGACA-GCTAGACTTGA-GATG-AGACAGTCTCTAGGGTCAAAGCTG-CAATCA
1 AGGGTCAAAGCTGACAGGC-AGACTTAAGGGTGAAGA-AGTCTCTAAGGTCAAAGCTGACAGGCA
* * * * **
1202539 GAC-AGA-AGGTAAGAAAGTCTATCA-AGTCAAAGCCAACTA-GCAGACAT-AATGGTGAAG-AA
64 GACTTGAGATG-AAG-AAGTCTCT-AGGGTCAAAGCTGAC-AGGCAGAC-TGAA-GGT-AAGAAA
*
1202598 GTCTTT
122 GTCTCT
* * * * * * * * *
1202604 AGGGTTAAAG-TCGATAGGCAGACTGAA-GGT-AAGAAAGTTTCTATGGTCAAAACAGATAGGTA
1 AGGGTCAAAGCT-GACAGGCAGACTTAAGGGTGAAG-AAGTCTCTAAGGTCAAAGCTGACAGGCA
* ** * * * * * * * * * **
1202666 GAATTGAGATGTGGCAGTCACCAAGGTCAAGGCTGGCAGACAGACTTG-AGATGAGGCAGTCTCT
64 GACTTGAGATGAAGAAGTCTCTAGGGTCAAAGCTGACAGGCAGAC-TGAAGGTAAGAAAGTCTCT
* * * * * *
1202730 AGGGTCAAAGATGAAAGGCAGACTTAA-GATGAAGTAA-TCTCTAGGGTCAAAGCCGACAGGTAG
1 AGGGTCAAAGCTGACAGGCAGACTTAAGGGTGAAG-AAGTCTCTAAGGTCAAAGCTGACAGGCAG
* * * * * ** *
1202793 ACTTAAGGGTGAAAAAGTCTCCAAGGTCAAAGCCAACAGGCAGACTTAAGGTAAGAAAGTCTCT
65 ACTTGA-GATGAAGAAGTCTCTAGGGTCAAAGCTGACAGGCAGACTGAAGGTAAGAAAGTCTCT
* * ** * * * * * * * *
1202857 AGGGTGAAAGCCGACAGATAAACTTGA-GATGAGGCAGTCTTTAAGGTCAAAG-TCGATAGACAG
1 AGGGTCAAAGCTGACAGGCAGACTTAAGGGTGAAGAAGTCTCTAAGGTCAAAGCT-GACAGGCAG
** * * * *
1202920 ACTAAAGGT-AAGAAAGTCTCAAAGGTCAAAGCTGACAGGCAGACTTGAGGGTGAAG-AAGTCTC
65 ACTTGAGATGAAG-AAGTCTCTAGGGTCAAAGCTGACAGGCAGAC-TGAAGGT-AAGAAAGTCTC
1202983 T
127 T
* ** * * * * * * *
1202984 AAGGTCAAAGCCAACAGGCAGACTTAA-GGTAAAAAAATTTCTAGGGTCAAAGCCGACAGGTAGA
1 AGGGTCAAAGCTGACAGGCAGACTTAAGGGTGAAGAAGTCTCTAAGGTCAAAGCTGACAGGCAGA
* * * * * *
1203048 CTAGAGATG-AGACAGTTTCTAGGGTCAAAGCT-ACTGTCAGACTAAAGGTATGAAAGTCTAC-
66 CTTGAGATGAAGA-AGTCTCTAGGGTCAAAGCTGACAGGCAGACTGAAGGTAAGAAAGTCT-CT
** * * * * * * *
1203109 AGGGTCAAAGCCAATAGGCAGACATAAGGGTAAAGAAGTCTCTAGGGTTAAAG-TCGATAGGGAG
1 AGGGTCAAAGCTGACAGGCAGACTTAAGGGTGAAGAAGTCTCTAAGGTCAAAGCT-GACAGGCAG
** * * ** * * * * * * *
1203173 ACTAAAGGT-AAGAAGGTCTCCAGGGTCAAAATTAATAAGTAGAATTG-AGATGAAG-TAGTCTC
65 ACTTGAGATGAAGAA-GTCTCTAGGGTCAAAGCTGACAGGCAG-ACTGAAGGT-AAGAAAGTCTC
*
1203235 C
127 T
* * * * ** * * * * * * *
1203236 AAGGTTAAAGCTGATAGGTAGACTGGA-GATG-AGATAGTTTCTAGGGTCAAACCCGATAGGCAA
1 AGGGTCAAAGCTGACAGGCAGACTTAAGGGTGAAGA-AGTCTCTAAGGTCAAAGCTGACAGGCAG
** * * * * * * **
1203299 ACTAAAGGT-AAAAAGGTCTCTAGGGTCAAAG-TCGACAGGCAAAGTTG-AGATGAGGCTA-TCT
65 ACTTGAGATGAAGAA-GTCTCTAGGGTCAAAGCT-GACAGGCAGA-CTGAAGGT-AAGAAAGTCT
1203360 CT
126 CT
* * ** * * * * * * *
1203362 AAGGTTAAAGCAAATAGGTAGACTGAA-GGTAAAAAAGTCTCTAAGGTCAAAGCTGGC-CGCAGA
1 AGGGTCAAAGCTGACAGGCAGACTTAAGGGTGAAGAAGTCTCTAAGGTCAAAGCTGACAGGCAGA
* * * * * * * **
1203425 CTTAAGGGTGAAGAAGTCTTTAGGGTTAAAG-TCGATAGGCAGACTTG-AGATGAGGCAGTCTCT
66 CTTGA-GATGAAGAAGTCTCTAGGGTCAAAGCT-GACAGGCAGAC-TGAAGGTAAGAAAGTCTCT
** * * * *
1203488 AGAATCAAAGCCGACAGGCAGA-TCTAA-GATGAGGTAGTCTCTAAGGTCAAAG-TGGACAGGCA
1 AGGGTCAAAGCTGACAGGCAGACT-TAAGGGTGAAGAAGTCTCTAAGGTCAAAGCT-GACAGGCA
* * ** * * * * **
1203550 AACTTGAGATG-TGGCGATCTCCAAGGTCAAAG-TCGACAGGCAGACTTG-AGATGAGGTAGTCT
64 GACTTGAGATGAAGAAG-TCTCTAGGGTCAAAGCT-GACAGGCAGAC-TGAAGGTAAGAAAGTCT
*
1203612 TT
126 CT
* * * * * ** * *
1203614 TGGGTTAAAGCCGAAAAGCAGAC-T-AGAAAT-AAGGCAA-TCTCTAGGGTCAAAGCTGACAAGC
1 AGGGTCAAAGCTGACAGGCAGACTTAAG-GGTGAA-G-AAGTCTCTAAGGTCAAAGCTGACAGGC
** * * * * *
1203675 AGACTAAAGGT-AAGAAAGTCTCCAGGGTCAAAG-TCGACAAGAAGACTTAAGCGTGAAG-AAGA
63 AGACTTGAGATGAAG-AAGTCTCTAGGGTCAAAGCT-GACAGGCAGACTGAAG-GT-AAGAAAG-
*
1203737 T-TCC
123 TCTCT
* * * * *
1203741 AAGGTCAAA-ATCGACAGGCAGACATAA-GGT-AAGAAAGCCT-TCAAGGTCAAAG-TCGATAGG
1 AGGGTCAAAGCT-GACAGGCAGACTTAAGGGTGAAG-AAGTCTCT-AAGGTCAAAGCT-GACAGG
* * * * * * *
1203801 TAGACTTAAGGT-AAGAAAGTCT-TCAGGGTCAAAACCGACAAGTAGACAT-AAGGGTGAAG-AA
62 CAGACTTGAGATGAAG-AAGTCTCT-AGGGTCAAAGCTGACAGGCAGAC-TGAA-GGT-AAGAAA
1203862 GTCTCCT
122 GTCT-CT
* ** * * * * *
1203869 A-GGCCAAAGCTGACAACCACACTT--GGGATG-AGTTAGTCTCCAAGATAAAAGCTGACAGGCA
1 AGGGTCAAAGCTGACAGGCAGACTTAAGGG-TGAAG-AAGTCTCTAAGGTCAAAGCTGACAGGCA
* * * * * * *
1203930 TG--TTGA-AGGTAAGAAAATCTCCACGGTCAAAGCCGAGAGGCAGACTTAAGGGTAA-AGAAGT
64 -GACTTGAGATG-AAG-AAGTCTCTAGGGTCAAAGCTGACAGGCAGACTGAA-GGTAAGA-AAGT
*
1203991 CTCC
124 CTCT
* * * * * **
1203995 A-GGTCAAAG-TCGATAGGTAGACTTGAA--ATGAGGCAA-TCTCTAGGGTCAAAGCTGACAGAT
1 AGGGTCAAAGCT-GACAGGCAGACTT-AAGGGTGAAG-AAGTCTCTAAGGTCAAAGCTGACAGGC
* * * *
1204055 AGA-TTGA-AGGTAAGAAAGTCTAC-AGGGTCAAAGCCGACAAGCAGACTAAAGGGTGAAG-AAG
63 AGACTTGAGATG-AAG-AAGTCT-CTAGGGTCAAAGCTGACAGGCAGACTGAA-GGT-AAGAAAG
*
1204116 TTTCT
123 TCTCT
** * * * * * * * **
1204121 AGGGTCAAAGCCAACAGGCAAACTTGA-GATGAAGCAGTATCTAGGGTCAAGGCCAACAGGCAGA
1 AGGGTCAAAGCTGACAGGCAGACTTAAGGGTGAAGAAGTCTCTAAGGTCAAAGCTGACAGGCAGA
* * ** * * * * * *
1204185 CTAGAGAT-AAGGCAGTCTCTAAAGTCAAAG-TCGATAGGTAAACTGAAGGTAAAAAAGCCTTT
66 CTTGAGATGAA-GAAGTCTCTAGGGTCAAAGCT-GACAGGCAGACTGAAGGTAAGAAAGTCTCT
* * ** * * *
1204247 AGGGTTAAAGTTGACAGGCAGACTTAAGGGTGAAGTGGTCTCGAAGGTTAAAGCAGACAGGCAGA
1 AGGGTCAAAGCTGACAGGCAGACTTAAGGGTGAAGAAGTCTCTAAGGTCAAAGCTGACAGGCAGA
* * * * * * * * ** * * *
1204312 CTTAAGGT-AGGAAAGTCTCCAGGATCAATGCTGACAGGTAGACTTAAATTTATAAAGTCTCC
66 CTTGAGATGAAG-AAGTCTCTAGGGTCAAAGCTGACAGGCAGACTGAAGGTAAGAAAGTCTCT
* * * * * *
1204374 AAGGTCAAAGCCGACAAGCAGACTTAAGGGTGGAGAAGTCTTTAAGGTCAAAG-TCGATAGGCAG
1 AGGGTCAAAGCTGACAGGCAGACTTAAGGGTGAAGAAGTCTCTAAGGTCAAAGCT-GACAGGCAG
* * * * * * * *
1204438 ACTTGAGATGATGGAGTCTCTAGGGTCAAAACCGATC-GGCAGACTAAAGATAAGCAAGTGTCT
65 ACTTGAGATGAAGAAGTCTCTAGGGTCAAAGCTGA-CAGGCAGACTGAAGGTAAGAAAGTCTCT
* * * * *** * *
1204501 AGGGTCACAGCCGACAGGCAGACTTAATGGTGAACAAGTCTCCGGGGTCAATGCGGACAGGCAGA
1 AGGGTCAAAGCTGACAGGCAGACTTAAGGGTGAAGAAGTCTCTAAGGTCAAAGCTGACAGGCAGA
* * * * * *
1204566 C-TGA-AGGTAAGAAAGTCTCCAAGGTCAAAG-TCGACAAGCAAACTAAAGGTAAGAAAGTCTCT
66 CTTGAGATG-AAG-AAGTCTCTAGGGTCAAAGCT-GACAGGCAGACTGAAGGTAAGAAAGTCTCT
* * * * ** * * ** * * *
1204628 GAGGTTAAAATC-GATAACCAGACTTGA-GAT-AAGGCTGTCTCTAGGGTCAAAGCCGACAGACA
1 -AGGGTCAAAGCTGACAGGCAGACTTAAGGGTGAA-GAAGTCTCTAAGGTCAAAGCTGACAGGCA
* * ** * ** * * * *
1204690 GACTTAAGATGAGGTTGTCT-TGAGGGTCAAATCCAACAAGCAAACTGATGGTAAGAAAGTCTCC
64 GACTTGAGATGAAGAAGTCTCT-AGGGTCAAAGCTGACAGGCAGACTGAAGGTAAGAAAGTCTCT
* * * * *
1204754 AAGGTCAAAGATGACAGGCAGACATAAGGGTGAAGAAGTCTCCT-AGGTTAAAGCTGACAAGCAG
1 AGGGTCAAAGCTGACAGGCAGACTTAAGGGTGAAGAAGTCT-CTAAGGTCAAAGCTGACAGGCAG
* * * * * * * *
1204818 ACTTGAGATG-AGTTAGCCTCCAAGGTAAAAGCCGACAGGCAGACTGAAGGTATGAAAATCTCT
65 ACTTGAGATGAAG-AAGTCTCTAGGGTCAAAGCTGACAGGCAGACTGAAGGTAAGAAAGTCTCT
* * * * * *
1204881 AAGGTCAAAGCCGAGAGGCAAACTTAAGGGTAAAGAAGTCTCTAGGGTCAAAGCTGACA---AG-
1 AGGGTCAAAGCTGACAGGCAGACTTAAGGGTGAAGAAGTCTCTAAGGTCAAAGCTGACAGGCAGA
* * * * * * * *
1204942 -TAGAGATGAGGTAGTGTCTAGAGTCAAAGCCGACAGGTAAACTGAAGGTAA-AAAGTCTAC-
66 CTTGAGATGAAGAAGTCTCTAGGGTCAAAGCTGACAGGCAGACTGAAGGTAAGAAAGTCT-CT
* * * *
1205002 AAGGTCAAA-ATCGACAGGCAGATTTAAGGGTGAAGAAGTCTCT-AGTGTCAAAGCTGACAGGGA
1 AGGGTCAAAGCT-GACAGGCAGACTTAAGGGTGAAGAAGTCTCTAAG-GTCAAAGCTGACAGGCA
* * * * * * * * * * * ***
1205065 GACTTGAGATGAGGATGTTTCCAAGGCCAAAGATTACAGGTAGAGT-AGAGATAAGGCGGTCTCT
64 GACTTGAGATGAAGAAGTCTCTAGGGTCAAAGCTGACAGGCAGACTGA-AGGTAAGAAAGTCTCT
* * * * * *
1205129 AAGATCAAAGCTGACAGGCA-ACTGAA-AGT-AAGAAAGTCTCT-AGTGTTAAAGCCGACAGGCA
1 AGGGTCAAAGCTGACAGGCAGACTTAAGGGTGAAG-AAGTCTCTAAG-GTCAAAGCTGACAGGCA
* * * * * * ** * *
1205190 GATTTAAGGGTGAAGAAGTCTCCAAGGTTAAAGCCAATAGGCAGAAAT-AAGGTAAGAAAGTCTC
64 GACTTGA-GATGAAGAAGTCTCTAGGGTCAAAGCTGACAGGCAG-ACTGAAGGTAAGAAAGTCTC
1205254 T
127 T
* *** * * *
1205255 AGGGACAAAGCTGGA-AATTAGACTTAAGTGTGAAGAAGTCTCCAGGGTCAAAG-TCGACAGGCA
1 AGGGTCAAAGCT-GACAGGCAGACTTAAGGGTGAAGAAGTCTCTAAGGTCAAAGCT-GACAGGCA
* * * * * * **
1205318 GGCTTAAGATGAGGCAA-TCTCTCGAGGTC-AAG-TCGAC-GAGCAGACTTG-AGATGAGGCAGT
64 GACTTGAGATGAAG-AAGTCTCTAG-GGTCAAAGCT-GACAG-GCAGAC-TGAAGGTAAGAAAGT
*
1205378 CTCC
124 CTCT
* ** * ** * * **
1205382 AAGGTCAAAATTGATC-GGTAGAC-TAAAAGT-AAGAAAGTCTCT-AGTGTCACAGCCGATGGGC
1 AGGGTCAAAGCTGA-CAGGCAGACTTAAGGGTGAAG-AAGTCTCTAAG-GTCAAAGCTGACAGGC
* * * * * * * *
1205443 AGACATAAGGGTGAACAAGTCTC-AAGGTCAAAGCTGATAGGCAAACTTAAGGTAAGAAAGTCTC
63 AGACTTGA-GATGAAGAAGTCTCTAGGGTCAAAGCTGACAGGCAGACTGAAGGTAAGAAAGTCTC
1205507 T
127 T
* * ** * * * * * * *
1205508 AGGGTCAAAGCTAACAAGCAGACTGGA-GGTAAAAAAGTCTC-CAGGTTCAAAACCGATATGCAG
1 AGGGTCAAAGCTGACAGGCAGACTTAAGGGTGAAGAAGTCTCTAAGG-TCAAAGCTGACAGGCAG
* * * * * * * * * * *** *
1205571 ACTTGAGATGAGGCATTTTGTAGGGTCAAAACCGATAGGCAGACTTG-AGATGAGGCTGTCTCC
65 ACTTGAGATGAAGAAGTCTCTAGGGTCAAAGCTGACAGGCAGAC-TGAAGGTAAGAAAGTCTCT
** * * * * * * * * *
1205634 AAAGTCAAAGCTGACAAGCA-AATTGATGGT-AAGAACGTCTCCAAGGT-TATGGTCGATAGGCA
1 AGGGTCAAAGCTGACAGGCAGACTTAAGGGTGAAGAA-GTCTCTAAGGTCAAAGCT-GACAGGCA
* * * * * * * * * * ** *
1205696 GACTTGAGATGAGGTAGTCTCCAGGGTCATAGCCGATAGGAAGACTTAAGATGAGTTAGTTTCT
64 GACTTGAGATGAAGAAGTCTCTAGGGTCAAAGCTGACAGGCAGACTGAAGGTAAGAAAGTCTCT
* * * * * * * *
1205760 AGGGTCAAAGC-GAACAAGCAGACTTGAGATGTG--GCAGTCTCCAAGGTTAAAGCCGACAAGCA
1 AGGGTCAAAGCTG-ACAGGCAGACTTAAG-GGTGAAGAAGTCTCTAAGGTCAAAGCTGACAGGCA
* * * * * *
1205822 GAC-T-A-ATGGTAAGAAAGTCTCTAGGGTCAAAGCCGATAGGTAGACTTAAGGGTAAAAAAATC
64 GACTTGAGAT-G-AAG-AAGTCTCTAGGGTCAAAGCTGACAGGCAGACTGAA-GGTAAGAAAGTC
*
1205884 TCC
125 TCT
* * * * * * * *
1205887 AGGGTCAAAG-TCGATAAGTAAACTT-ATGGT-AGGAAAGTCTCTAGGGTCAAAG-TCGATAGGC
1 AGGGTCAAAGCT-GACAGGCAGACTTAAGGGTGAAG-AAGTCTCTAAGGTCAAAGCT-GACAGGC
* * * * * * * *
1205948 AAACTTGAGATGAGGTAGTCTCCAAGGTGAAAGCTGACAGGCAGACTAAAGGTAAAAAAGTCTCC
63 AGACTTGAGATGAAGAAGTCTCTAGGGTCAAAGCTGACAGGCAGACTGAAGGTAAGAAAGTCT-C
1206013 T
127 T
** * * * * * **
1206014 -GGGTCAAAATTGACAAGCAGACTTAAGGGTGAAGAAGTCTCGAGGGTTAAAGCTAACAAAC-GA
1 AGGGTCAAAGCTGACAGGCAGACTTAAGGGTGAAGAAGTCTCTAAGGTCAAAGCTGACAGGCAG-
* * * * * * * * * *
1206077 ACTTGAGAT-ATGGCAGTCTCCCAAGGTCAAAACCGATAAGCAGACTTG-AGATGAGACAA-TCT
65 ACTTGAGATGA-AGAAGTCT-CTAGGGTCAAAGCTGACAGGCAGAC-TGAAGGTAAGA-AAGTCT
1206139 CT
126 CT
* * * * * * * *
1206141 AGGGTCAAAGCCGATAGGCAAACTTGA-GAT-AAGGTAGTCT-TTAGAGTCAAAGCCGACAGGCA
1 AGGGTCAAAGCTGACAGGCAGACTTAAGGGTGAA-GAAGTCTCTAAG-GTCAAAGCTGACAGGCA
* * * * * ** * *
1206203 GACTTGAGATGAGGTAGTCTCTAAGGTCAAAGCCGACCGATAGACTGAAGATAAGAAAGTCTTT
64 GACTTGAGATGAAGAAGTCTCTAGGGTCAAAGCTGACAGGCAGACTGAAGGTAAGAAAGTCTCT
** * * * * * *
1206267 AATGTCAAAG-TCGACAAGCAGAC-TAAAGGT-AAGAAAGTCTC-CAGGATCAAAACTGATAGGT
1 AGGGTCAAAGCT-GACAGGCAGACTTAAGGGTGAAG-AAGTCTCTAAGG-TCAAAGCTGACAGGC
* * * * * * * * * * ** * * *
1206328 ATACTTAAGATGAGGTAGGCTCCATGGTCAAAGCCGATAAGTGGACTTG-AGATGAGATAGTCTC
63 AGACTTGAGATGAAGAAGTCTCTAGGGTCAAAGCTGACAGGCAGAC-TGAAGGTAAGAAAGTCTC
*
1206392 G
127 T
* * * * * * * * *
1206393 AAGTTCAAAGCCGATAGAC-GAACTGAA-GGT-CAGAAAGTCTCCAAGGTCAAAGCTGATAGGCA
1 AGGGTCAAAGCTGACAGGCAG-ACTTAAGGGTGAAG-AAGTCTCTAAGGTCAAAGCTGACAGGCA
* * * * * * ** *
1206455 GACTTGAGTTGAGGATGTCTCCAAGGTTAAAGCCAATAGGCAGACTGAAGGTAAGAAAGTCTCT
64 GACTTGAGATGAAGAAGTCTCTAGGGTCAAAGCTGACAGGCAGACTGAAGGTAAGAAAGTCTCT
* * * * * * *
1206519 AGGGTCAAAGCCGACCA--CAAACTTAAGGGTGAAGAAGTCTCCAGGGTTAAAGCCGATAGGCAG
1 AGGGTCAAAGCTGA-CAGGCAGACTTAAGGGTGAAGAAGTCTCTAAGGTCAAAGCTGACAGGCAG
* * * * * * * * **
1206582 ACTTAAGATGAGGCAAGTCTCTAGGTTCAAAGCCGATAGGCAAACCT-AAGATGAGGTAGTCTCT
65 ACTTGAGATGAAG-AAGTCTCTAGGGTCAAAGCTGACAGGCAGA-CTGAAGGTAAGAAAGTCTCT
* * * * * * * ** * * *
1206646 AAGGTCAAAACGGGCAGGCAAACTTGAGATGTG--GCGGTCT-TCAAGGTTAAAGTTGACAAGCA
1 AGGGTCAAAGCTGACAGGCAGACTTAAG-GGTGAAGAAGTCTCT-AAGGTCAAAGCTGACAGGCA
* * * ** * * * *
1206708 GAC-TGA-AGGGAAGAAAGTTTAC-ATGGTCAAAGCCAACAAGCAAACTTATGGGTGAAGAAA-T
64 GACTTGAGA-TGAAG-AAGTCT-CTAGGGTCAAAGCTGACAGGCAGACTGA-AGGT-AAGAAAGT
1206769 CTCT
124 CTCT
* * * * * * *
1206773 AGGGTCAAAGTTGACAGGTAGATTTATA--GT-AAGAAAGTCTCTAGGGTAAAAGCCGATAGGCA
1 AGGGTCAAAGCTGACAGGCAGACTTA-AGGGTGAAG-AAGTCTCTAAGGTCAAAGCTGACAGGCA
* * * * * **
1206835 AACTTGAGATG-AGATAGTCTAC-AAGGTCAAAGCCGACAGGCAGACTTG-AGATGAGGTAGTCT
64 GACTTGAGATGAAGA-AGTCT-CTAGGGTCAAAGCTGACAGGCAGAC-TGAAGGTAAGAAAGTCT
1206897 CT
126 CT
* * * * * * *
1206899 AAGGTCAAAGCCGAAAGGCAGACTTAA-GATGAGGCAGTCTTTAAGGTCAAAGCTGACAGGCAGA
1 AGGGTCAAAGCTGACAGGCAGACTTAAGGGTGAAGAAGTCTCTAAGGTCAAAGCTGACAGGCAGA
** * * ** ** * * *
1206963 CTAAAGGT-AAGAAAGTCTCCAACGTCAAAGCCCAAAGGCAGACTTAAAGGTGAAG-AAGT-TTT
66 CTTGAGATGAAG-AAGTCTCTAGGGTCAAAGCTGACAGGCAGAC-TGAAGGT-AAGAAAGTCTCT
* * * * * *
1207025 CAAGGTCAAAGCCGACAGGCAGACTTAA-GAT-AAGAAAGCCTC-AATGGTCAAAGCTGACAAGT
1 -AGGGTCAAAGCTGACAGGCAGACTTAAGGGTGAAG-AAGTCTCTAA-GGTCAAAGCTGACAGGC
* * * * * * * *
1207087 AGACTTAAGGT-AAGATAGCCGTC-AGGATCAAAACCGATAGGTAGACAT-AAGGGTGAAG-AAG
63 AGACTTGAGATGAAGA-AGTC-TCTAGGGTCAAAGCTGACAGGCAGAC-TGAA-GGT-AAGAAAG
1207148 TCTCT
123 TCTCT
* * * * * * * *
1207153 TGGGTTAAAGCTGACAAGCAGACTTGA-GATG-AGTTAGTCTCTAAGGTAAAAGCTGACAAGCAG
1 AGGGTCAAAGCTGACAGGCAGACTTAAGGGTGAAG-AAGTCTCTAAGGTCAAAGCTGACAGGCAG
* * * * * * * *
1207216 AC-TGA-AGGTAAGAAAGTCTCTAAGGTCAAAGTTAAGAGGCAAACTTAAGGGTAA-AGAAGCCT
65 ACTTGAGATG-AAG-AAGTCTCTAGGGTCAAAGCTGACAGGCAGACTGAA-GGTAAGA-AAGTCT
*
1207278 CG
126 CT
* * * * * * * * * * *
1207280 AAGGTCAAAGCCGAGAGTCAGACTTGA-GATGAGGTAGTCTCTAGGGTCAAAGCTAACAAGCAGA
1 AGGGTCAAAGCTGACAGGCAGACTTAAGGGTGAAGAAGTCTCTAAGGTCAAAGCTGACAGGCAGA
* * * * * * *
1207344 C-TGAG-GGTAAGAAAGTCTATAGGGTCAAAGCTGAAAGGCAAACTTAAGGGT-GGTGAAGTCTC
66 CTTGAGATG-AAG-AAGTCTCTAGGGTCAAAGCTGACAGGCAGACTGAA-GGTAAG-AAAGTCTC
1207406 T
127 T
* * * * * * * * *
1207407 AGGGTCAAAGCTGATAGGAAGACTTGA-GATGAGGCAGTCTCCAATGTC-AAGCCGACAGGCAGA
1 AGGGTCAAAGCTGACAGGCAGACTTAAGGGTGAAGAAGTCTCTAAGGTCAAAGCTGACAGGCAGA
* * * * * * *
1207470 CTTGAGATGAGGCAGTCT-TCA-GGTTAAAGCCGACAAGCAAACTGAAGGTAAGAAAGTCTCC
66 CTTGAGATGAAGAAGTCTCT-AGGGTCAAAGCTGACAGGCAGACTGAAGGTAAGAAAGTCTCT
* * * ** * * * * * * *
1207531 AAGTTTAAAGCCAACAGGCAGACATAAGGGTGAAGAAGTCTCCAAGGTTAAGGCCGATAGACAGA
1 AGGGTCAAAGCTGACAGGCAGACTTAAGGGTGAAGAAGTCTCTAAGGTCAAAGCTGACAGGCAGA
* * * * * * * * * *
1207596 CTT-A-AGGCAAGAAAGTCTCCAAGGTTAAATCTGACTGGTAGACTTAAGGTTAGAAAGTCTCC
66 CTTGAGATG-AAG-AAGTCTCTAGGGTCAAAGCTGACAGGCAGACTGAAGGTAAGAAAGTCTCT
* * * * * * *
1207658 AGAGTCAAAGCCGACAAGCAGACTTAGGGGTGAAGAAGTCTC-CAGAGTCAAAGC-CAGAGGCAG
1 AGGGTCAAAGCTGACAGGCAGACTTAAGGGTGAAGAAGTCTCTAAG-GTCAAAGCTGACAGGCAG
* * * * ** * * * * * *
1207721 ACTTGAAATGAGGTAGTCTCCAAAGTCAAAGCCGATAGGCAGACTTG-AGATGAGGCAA-TCTCC
65 ACTTGAGATGAAGAAGTCTCTAGGGTCAAAGCTGACAGGCAGAC-TGAAGGT-AAGAAAGTCTCT
* * * * * **
1207784 AAGGTCAAACCTGACTGGCAGACTGAA-GGT-AAGAAAGTCTCT-AGTGGCACAA-CCAACAGGC
1 AGGGTCAAAGCTGACAGGCAGACTTAAGGGTGAAG-AAGTCTCTAAG-GTCA-AAGCTGACAGGC
* * * * * ** * * ** *
1207845 AAACTTAAGGTGAACAAGTCTCCAAGTTTC-AAGCCGATAGATAAACTGAAGGTAAGAAACG-CT
63 AGACTTGAGATGAAGAAGTCT-CTAGGGTCAAAGCTGACAGGCAGACTGAAGGTAAGAAA-GTCT
*
1207908 CC
126 CT
* ** * ** * * * * * * *
1207910 AGGGTCAAAGCCGGTAAGCAGAC-TAAAAGTAAAAAAGTCTCTAGGGTCAAAACCGACAAGTAGA
1 AGGGTCAAAGCTGACAGGCAGACTTAAGGGTGAAGAAGTCTCTAAGGTCAAAGCTGACAGGCAGA
* * ** * * * * * * * *
1207974 CTTTAGATGAGGCTGTCTCTAAGGTTAATGCCGACAAGCAAAATGAAGGTAAGAAAGTCTCC
66 CTTGAGATGAAGAAGTCTCTAGGGTCAAAGCTGACAGGCAGACTGAAGGTAAGAAAGTCTCT
* * * * * *
1208036 AAGGTCAAAGATGATAGGCAGATTTAATGGTGAAAAAGTCTCTAAGGTCATCTAGGGTCAAAGCT
1 AGGGTCAAAGCTGACAGGCAGACTTAAGGGTG---AAG-----AA-GTC-TCTAAGGTCAAAGCT
* * * * * * * * * *
1208101 GACAGGTAGACTTAAGATGAGGCAGTCTCTAGGGTCAAAGCCGACAAGTAGACT-AGAGATGAGG
56 GACAGGCAGACTTGAGATGAAGAAGTCTCTAGGGTCAAAGCTGACAGGCAGACTGA-AGGTAAGA
* *
1208165 TAGTCTCC
120 AAGTCTCT
* * * * * * ** *
1208173 AAGATCAAAGCCGACAAGTAGGCAGAA-GGT-AAGAAAGTCTCTAGGGTCAAAGCTGACAGGCAG
1 AGGGTCAAAGCTGACAGGCAGACTTAAGGGTGAAG-AAGTCTCTAAGGTCAAAGCTGACAGGCAG
* * * * * * *
1208236 ACTTGAGATGAGGTAGTCTCTAGGGTCAAAGCCGA-ACGACAAACTTG-AGATAAGGCAA-TCTC
65 ACTTGAGATGAAGAAGTCTCTAGGGTCAAAGCTGACA-GGCAGAC-TGAAGGTAA-GAAAGTCTC
1208298 T
127 T
* * ** * ** *
1208299 GGGGTCAAAG-TCGACAGGCAGGC-TAAATGT-AAGAAAGTCTCTAGGGTCATGGCCGACAGGCA
1 AGGGTCAAAGCT-GACAGGCAGACTTAAGGGTGAAG-AAGTCTCTAAGGTCAAAGCTGACAGGCA
* * * * * * * * *
1208361 AACTTAAGGGTGAAGAAGTCTCCAAGGTCAAAGCCGATAGGCAGACTTAAGGTAATAAAGTCTCT
64 GACTTGA-GATGAAGAAGTCTCTAGGGTCAAAGCTGACAGGCAGACTGAAGGTAAGAAAGTCTCT
* * * *
1208426 AGGGTCAAAG-TCGACTGGAAGACTTAA-GGT-AAGAAAGTCTCT-AGGATCAAAGCTGATAGGT
1 AGGGTCAAAGCT-GACAGGCAGACTTAAGGGTGAAG-AAGTCTCTAAGG-TCAAAGCTGACAGGC
* * * * * * * * * * **
1208487 AGACTTGAAATGAGGCAGTCTTTTGGGTTAAAACCGACAGGAAGATTGAAGGCGAGAAAGTCTAC
63 AGACTTGAGATGAAGAAGTCTCTAGGGTCAAAGCTGACAGGCAGACTGAAGGTAAGAAAGTCT-C
1208552 -
127 T
* * *
1208552 AGGGTCAAAGCCGACAAGCAGACTTAAGGGTAAAGAAGTCT
1 AGGGTCAAAGCTGACAGGCAGACTTAAGGGTGAAGAAGTCT
1208593 GAAAGCTTAT
Statistics
Matches: 5991, Mismatches: 1702, Indels: 890
0.70 0.20 0.10
Matches are distributed among these distances:
120 1 0.00
121 55 0.01
122 40 0.01
123 7 0.00
124 74 0.01
125 384 0.06
126 2516 0.42
127 2570 0.43
128 220 0.04
129 21 0.00
130 4 0.00
132 3 0.00
135 2 0.00
136 7 0.00
137 87 0.01
ACGTcount: A:0.36, C:0.17, G:0.28, T:0.20
Consensus pattern (127 bp):
AGGGTCAAAGCTGACAGGCAGACTTAAGGGTGAAGAAGTCTCTAAGGTCAAAGCTGACAGGCAGA
CTTGAGATGAAGAAGTCTCTAGGGTCAAAGCTGACAGGCAGACTGAAGGTAAGAAAGTCTCT
Found at i:1200882 original size:41 final size:42
Alignment explanation
Indices: 1200806--1200905 Score: 112
Period size: 41 Copynumber: 2.4 Consensus size: 42
1200796 GGTTAAAATC
**
1200806 GATAGGCAAACTTAAGGTAAGAAAGTCTCTAGGGTCAAAGCT
1 GATAGGCAAACTTAAGGTAAGAAAGTCTAGAGGGTCAAAGCT
* * * * *
1200848 GATAGGTAGACTTAA-GTTAGAAAGTCTAGAGGGTCAAATCC
1 GATAGGCAAACTTAAGGTAAGAAAGTCTAGAGGGTCAAAGCT
* *
1200889 GACAAGCAAACTTAAGG
1 GATAGGCAAACTTAAGG
1200906 GTGAAGAAGT
Statistics
Matches: 46, Mismatches: 11, Indels: 2
0.78 0.19 0.03
Matches are distributed among these distances:
41 32 0.70
42 14 0.30
ACGTcount: A:0.39, C:0.14, G:0.26, T:0.21
Consensus pattern (42 bp):
GATAGGCAAACTTAAGGTAAGAAAGTCTAGAGGGTCAAAGCT
Found at i:1201254 original size:41 final size:42
Alignment explanation
Indices: 1201166--1201266 Score: 132
Period size: 41 Copynumber: 2.4 Consensus size: 42
1201156 ATGGTAAGAA
* * * *
1201166 AGTCTCTAGAGTCAAAACTGATAGGTAGACTTGAGATGAGGC
1 AGTCTCTAGGGTCAAAGCTAACAGGTAGACTTGAGATGAGGC
* *
1201208 AGTCTCTGGGGTTAAAGCTAACAGGTA-ACTTGAGATGAGGC
1 AGTCTCTAGGGTCAAAGCTAACAGGTAGACTTGAGATGAGGC
*
1201249 TGTCTCTAGGGTCAAAGC
1 AGTCTCTAGGGTCAAAGC
1201267 CGACAAGCAA
Statistics
Matches: 50, Mismatches: 9, Indels: 1
0.83 0.15 0.02
Matches are distributed among these distances:
41 29 0.58
42 21 0.42
ACGTcount: A:0.30, C:0.16, G:0.30, T:0.25
Consensus pattern (42 bp):
AGTCTCTAGGGTCAAAGCTAACAGGTAGACTTGAGATGAGGC
Found at i:1201347 original size:43 final size:43
Alignment explanation
Indices: 1201281--1201362 Score: 103
Period size: 43 Copynumber: 1.9 Consensus size: 43
1201271 AAGCAAAAGG
* * *
1201281 AAGGTAAGAAAGTCTCCAAGGTCAAAGA-CGACAGGCAGACTTA
1 AAGGTAAAAAAGTCTACAAGGTCAAA-ACCGACAAGCAGACTTA
* *
1201324 AAGGTAAAAAAGTCTATAGGGTCAAAACCGACAAGCAGA
1 AAGGTAAAAAAGTCTACAAGGTCAAAACCGACAAGCAGA
1201363 TTTGAGATGA
Statistics
Matches: 33, Mismatches: 5, Indels: 2
0.82 0.12 0.05
Matches are distributed among these distances:
42 1 0.03
43 32 0.97
ACGTcount: A:0.45, C:0.17, G:0.24, T:0.13
Consensus pattern (43 bp):
AAGGTAAAAAAGTCTACAAGGTCAAAACCGACAAGCAGACTTA
Found at i:1201700 original size:41 final size:41
Alignment explanation
Indices: 1201639--1201733 Score: 122
Period size: 41 Copynumber: 2.3 Consensus size: 41
1201629 CATCTCCACG
1201639 GTCAAAGCTGACTGGCAGACTTAAGGTAACAAAGTCTCCAA
1 GTCAAAGCTGACTGGCAGACTTAAGGTAACAAAGTCTCCAA
* *
1201680 GTCAAAG-TCGACTAGG-AGACTTAAGGTAAGAAAGTCTCTAA
1 GTCAAAGCT-GACT-GGCAGACTTAAGGTAACAAAGTCTCCAA
*
1201721 GGCCAAAGCTGAC
1 -GTCAAAGCTGAC
1201734 AGGTAAACTT
Statistics
Matches: 47, Mismatches: 3, Indels: 7
0.82 0.05 0.12
Matches are distributed among these distances:
40 1 0.02
41 34 0.72
42 11 0.23
43 1 0.02
ACGTcount: A:0.37, C:0.20, G:0.24, T:0.19
Consensus pattern (41 bp):
GTCAAAGCTGACTGGCAGACTTAAGGTAACAAAGTCTCCAA
Found at i:1201766 original size:210 final size:211
Alignment explanation
Indices: 1201458--1202319 Score: 517
Period size: 211 Copynumber: 4.1 Consensus size: 211
1201448 AAAAGGTGAG
* * ** *
1201458 AAAGTCTCCAAGGTCAAAG-CTGAC-AGGCAGACAT-AGGATGAGGCAGTCTCTAAGGTCAAAGC
1 AAAGTCTCCAAGGTCAAAGTC-GACTAGG-AGACTTAAGG-TAAGAAAGTCTCTAAGGCCAAAGC
* *
1201520 TGAAAGACAAACTTAAGATAAGGTAGTCTCTAGGGTCAAAG-TCGATAGGCAAACTAAATATAAG
63 TGAAAGACAAACTTAAGATAAGGCAGTCTCTAGGGTCAAAGCT-GATAGGCAAACTAAAGATAAG
** * *
1201584 AAAGTCTTTAGGGTCAAAGTCGACTGGCAGATTA-AAGGGTGAAGACA-TCTCCACGGTCAAAGC
127 AAAGTCTACAGGGTCAAAGTCGACAGGCAGA-CACAAGGGTGAAGA-AGTCTCCACGGTCAAAGC
1201647 TGACT-GGCAGACTTAAGGTAAC
190 TGA-TAGGCAGACTTAAGGTAAC
1201669 AAAGTCTCCAA-GTCAAAGTCGACTAGGAGACTTAAGGTAAGAAAGTCTCTAAGGCCAAAGCTGA
1 AAAGTCTCCAAGGTCAAAGTCGACTAGGAGACTTAAGGTAAGAAAGTCTCTAAGGCCAAAGCTGA
* ** * * * * * *
1201733 CAGGTAAACTTGAGATGAGGCAGTCTTTAGGGTCAAAGCTGATAGGCAAATTGAAGGTAAGAAAG
66 AAGACAAACTTAAGATAAGGCAGTCTCTAGGGTCAAAGCTGATAGGCAAACTAAAGATAAGAAAG
* * * * *
1201798 TCTACAGGGTCAAAGTCGACAGGCAGACACAAGGGTGAAGAAGTCTCTATGGTTAAATCTTATAG
131 TCTACAGGGTCAAAGTCGACAGGCAGACACAAGGGTGAAGAAGTCTCCACGGTCAAAGCTGATAG
* *
1201863 GCAGACTTAAGGTTAG
196 GCAGACTTAAGGTAAC
** * * * ** ** * ** *
1201879 AAAGTCTCCAAGGTCAAAACCGA-TAGGCAGAGTTGAGATGTGGCAGTCTCTAGGGTTAAACCTG
1 AAAGTCTCCAAGGTCAAAGTCGACTAGG-AGACTTAAGGTAAGAAAGTCTCTAAGGCCAAAGCTG
* * * * * ** * * * * * * *
1201943 ATAGGCATACTGAAGGTAAGAAAGTTTAC-ATGGTCAAAG-TCGACAAGCAGACTTAAGGGTGAA
65 AAAGACAAACTTAAGATAAGGCAGTCT-CTAGGGTCAAAGCT-GATAGGCAAAC-TAAAGAT-AA
* ** * * *
1202006 GAAATTTCTA-A-GGTCAAAGTCGACAGGCAGAC-TTAGGGT-AAGAAAGTCTCTAGGGTCAACG
126 GAAA-GTCTACAGGGTCAAAGTCGACAGGCAGACACAAGGGTGAAG-AAGTCTCCACGGTCAAAG
* * * *
1202067 -TCGATAGGCAAACTTAAGATGAG
189 CT-GATAGGCAGACTTAAGGTAAC
* * * * * **
1202090 ACAGTCTCTAAGGTGAAAG-CTGA-TAGGCAGTC-TAAGGGTAAAAAAGTCTCTAAGGTGAAAGC
1 AAAGTCTCCAAGGTCAAAGTC-GACTAGG-AGACTTAA-GGTAAGAAAGTCTCTAAGGCCAAAGC
* * * * * * * * * **
1202152 CGATAGGCAGACTTGAGATGAGGCAGTCTCTAAGGTCAAAGCTGAAAGGCAGACTTGAGATTAAG
63 TGAAAGACAAACTTAAGATAAGGCAGTCTCTAGGGTCAAAGCTGATAGGCAAACTAAAGA-TAAG
* ** * * ** * * *
1202217 -TAGTCT-CTAGGGTCAAAGTCGGTAAGCGGACTTAAGGGTGAAAAAGTCTCTAAGGTCAAAG-T
127 AAAGTCTAC-AGGGTCAAAGTCGACAGGCAGACACAAGGGTGAAGAAGTCTCCACGGTCAAAGCT
* *
1202279 CGATAGGCAGACTTGAGGTAAG
191 -GATAGGCAGACTTAAGGTAAC
* *
1202301 AAAGTCTCTAGGGTCAAAG
1 AAAGTCTCCAAGGTCAAAG
1202320 CCCACAGGTA
Statistics
Matches: 507, Mismatches: 118, Indels: 52
0.75 0.17 0.08
Matches are distributed among these distances:
208 3 0.01
209 5 0.01
210 200 0.39
211 259 0.51
212 29 0.06
213 7 0.01
214 4 0.01
ACGTcount: A:0.36, C:0.16, G:0.27, T:0.21
Consensus pattern (211 bp):
AAAGTCTCCAAGGTCAAAGTCGACTAGGAGACTTAAGGTAAGAAAGTCTCTAAGGCCAAAGCTGA
AAGACAAACTTAAGATAAGGCAGTCTCTAGGGTCAAAGCTGATAGGCAAACTAAAGATAAGAAAG
TCTACAGGGTCAAAGTCGACAGGCAGACACAAGGGTGAAGAAGTCTCCACGGTCAAAGCTGATAG
GCAGACTTAAGGTAAC
Found at i:1202162 original size:253 final size:252
Alignment explanation
Indices: 1201787--1208592 Score: 1073
Period size: 253 Copynumber: 26.9 Consensus size: 252
1201777 GGCAAATTGA
* ** * *
1201787 AGGTAAGAAAGTCTAC-AGGGTCAAAGTCGACAGGCAGACACAAGGGTGAAGA-AGTCTCTATGG
1 AGGTAAGAAAGTCT-CTAGGGTCAAAGTCGACAGGCAAACTTAA-GATG-AGACAGTCTCTAAGG
* * * * * * * *
1201850 TTAAATCTTATAGGCAGACTTAAGGTTAGAAAGTCTCCAAGGTCAAAACCGATAGGCAGAGTTGA
63 TCAAAGCTGATAGGCAGAC-TAAGGTAAAAAAGTCTCTAAGGTCAAAGCCGATAGGCAGACTTGA
* * * * * * *
1201915 GATGTGGCAGTCTCTAGGGTTAAACCTGATAGGCATAC-TGA-AGGTAAGAAAGTTTAC-ATGGT
127 GATGAGGCAGTCTCTAAGGTCAAACCTGAAAGGCAGACTTGAGA-GTAAG-AAGTCT-CTAGGGT
*
1201977 CAAAGTCGACAAGCAGACTTAAGGGTGAAGAAA-TTTCTAAGGTCAAAGTCGACAGGCAGACTT-
189 CAAAGTCGACAAGCAGACTTAAGGGTGAA-AAAGTCTCTAAGGTCAAAGTCGACAGGCAGACTTG
* * *
1202040 AGGGTAAGAAAGTCTCTAGGGTCAACGTCGATAGGCAAACTTAAGATGAGACAGTCTCTAAGGTG
1 A-GGTAAGAAAGTCTCTAGGGTCAAAGTCGACAGGCAAACTTAAGATGAGACAGTCTCTAAGGTC
* *
1202105 AAAGCTGATAGGCAGTCTAAGGGTAAAAAAGTCTCTAAGGTGAAAGCCGATAGGCAGACTTGAGA
65 AAAGCTGATAGGCAGACTAA-GGTAAAAAAGTCTCTAAGGTCAAAGCCGATAGGCAGACTTGAGA
* * *
1202170 TGAGGCAGTCTCTAAGGTCAAAGCTGAAAGGCAGACTTGAGATTAAGTAGTCTCTAGGGTCAAAG
129 TGAGGCAGTCTCTAAGGTCAAACCTGAAAGGCAGACTTGAGAGTAAGAAGTCTCTAGGGTCAAAG
** * *
1202235 TCGGTAAGCGGACTTAAGGGTGAAAAAGTCTCTAAGGTCAAAGTCGATAGGCAGACTTG
194 TCGACAAGCAGACTTAAGGGTGAAAAAGTCTCTAAGGTCAAAGTCGACAGGCAGACTTG
* * * * * * * *
1202294 AGGTAAGAAAGTCTCTAGGGTCAAAGCCCACAGGTAAACTTGAGATGAGGCAGTTTTTAGGGTCA
1 AGGTAAGAAAGTCTCTAGGGTCAAAGTCGACAGGCAAACTTAAGATGAGACAGTCTCTAAGGTCA
* * * * *
1202359 AAG-TCGACAGGTAGACTAAAGGTAAAAAAGTCT-TCAAGGTCAAAGCTGACAGGCAGACTTAAA
66 AAGCT-GATAGGCAGACT-AAGGTAAAAAAGTCTCT-AAGGTCAAAGCCGATAGGCAGACTT-GA
* * * * ** * * * * *
1202422 GGTGAAGAAGTCTCCAAGGTCAAAGTTTACAGGCAGACTTAAG-GTAAAAAAG-CTCCAGGGTCA
127 GATGAGGCAGTCTCTAAGGTCAAACCTGAAAGGCAGACTTGAGAGT-AAGAAGTCTCTAGGGTCA
* * * * * ** *
1202485 AAG-CTGAC-AGCTAGACTTGA-GATGAGACAGTCTCTAGGGTCAAAG-CTG-CAATCAGAC-AG
191 AAGTC-GACAAGC-AGACTTAAGGGTGAAAAAGTCTCTAAGGTCAAAGTC-GACAGGCAGACTTG
* * * * * * * * *
1202544 AAGGTAAGAAAGTCTATCA-AGTCAAAGCCAACTA-GCAGACATAATGGTGAAGA-AGTCTTTAG
1 -AGGTAAGAAAGTCTCT-AGGGTCAAAGTCGAC-AGGCAAACTTAA-GATG-AGACAGTCTCTAA
* * * * * * * *
1202606 GGTTAAAG-TCGATAGGCAGACTGAAGGTAAGAAAGTTTCTATGGTCAAAACAGATAGGTAGAAT
61 GGTCAAAGCT-GATAGGCAGACT-AAGGTAAAAAAGTCTCTAAGGTCAAAGCCGATAGGCAGACT
* * * ** ** * * *
1202670 TGAGATGTGGCAGTCACCAAGGTCAAGGCTGGCAGACAGACTTGAGA-TGAGGCAGTCTCTAGGG
124 TGAGATGAGGCAGTCTCTAAGGTCAAACCTGAAAGGCAGACTTGAGAGT-AAGAAGTCTCTAGGG
* * * * *
1202734 TCAAAGAT-GA-AAGGCAGACTTAA-GATGAAGTAA-TCTCTAGGGTCAAAGCCGACAGGTAGAC
188 TCAAAG-TCGACAA-GCAGACTTAAGGGTGAA-AAAGTCTCTAAGGTCAAAGTCGACAGGCAGAC
*
1202795 TTA
250 TTG
* * * * * * * * *
1202798 AGGGTGAA-AAAGTCTCCAAGGTCAAAGCCAACAGGCAGACTTAAGGTAAGAAAGTCTCTAGGGT
1 A-GGT-AAGAAAGTCTCTAGGGTCAAAGTCGACAGGCAAACTTAAGATGAGACAGTCTCTAAGGT
* * * ** * * * * *** * * * **
1202862 GAAAGCCGACAGATAAACTTGAGATGAGGCAGTCTTTAAGGTCAAAGTCGATAGACAGACTAAAG
64 CAAAGCTGATAGGCAGAC-TAAGGTAAAAAAGTCTCTAAGGTCAAAGCCGATAGGCAGACTTGAG
* * ** * * * * *
1202927 GTAAGAAAGTCTCAAAGGTCAAAGCTGACAGGCAGACTTGAGGGTGAAGAAGTCTCTAAGGTCAA
128 ATGAGGCAGTCTCTAAGGTCAAACCTGAAAGGCAGACTTGAGAGT-AAGAAGTCTCTAGGGTCAA
* * * * * * * * * *
1202992 AGCCAACAGGCAGACTTAA-GGTAAAAAAATTTCTAGGGTCAAAGCCGACAGGTAGACTAG
192 AGTCGACAAGCAGACTTAAGGGTGAAAAAGTCTCTAAGGTCAAAGTCGACAGGCAGACTTG
* * * * * * * * * *
1203052 AGATGAGACAGTTTCTAGGGTCAAAG-CTACTGTCAGACTAAAGGTATGA-A-AGTCTAC-AGGG
1 AGGTAAGAAAGTCTCTAGGGTCAAAGTCGACAGGCAAACTTAA-G-ATGAGACAGTCT-CTAAGG
** * * * * * **
1203113 TCAAAGCCAATAGGCAGACATAAGGGTAAAGAAGTCTCTAGGGTTAAAGTCGATAGGGAGACTAA
63 TCAAAGCTGATAGGCAGAC-TAA-GGTAAAAAAGTCTCTAAGGTCAAAGCCGATAGGCAGACTTG
* * * * * * * * * * * * *
1203178 AGGT-AAGAAGGTCTCCAGGGTCAAA-ATTAATAAGTAGAATTGAGA-TGAAGTAGTCTCCAAGG
126 AGATGAGGCA-GTCTCTAAGGTCAAACCTGAA-AGGCAGACTTGAGAGT-AAGAAGTCTCTAGGG
* * * * ** * * * * * ** * * *
1203240 TTAAAG-CTGATAGGTAGACTGGA-GATGAGATAGTTTCTAGGGTCAAACCCGATAGGCAAACTA
188 TCAAAGTC-GACAAGCAGACTTAAGGGTGAAAAAGTCTCTAAGGTCAAAGTCGACAGGCAGACTT
*
1203303 A
252 G
* * *
1203304 AGGTAA-AAAGGTCTCTAGGGTCAAAGTCGACAGGCAAAGTTGAGATGAGGCTA-TCTCTAAGGT
1 AGGTAAGAAA-GTCTCTAGGGTCAAAGTCGACAGGCAAACTTAAGATGAGAC-AGTCTCTAAGGT
* ** * * *** *
1203367 TAAAGCAAATAGGTAGACTGAAGGTAAAAAAGTCTCTAAGGTCAAAGCTG-GCCGCAGACTTAAG
64 CAAAGCTGATAGGCAGACT-AAGGTAAAAAAGTCTCTAAGGTCAAAGCCGATAGGCAGACTTGA-
* * * * * * * * * * **
1203431 GGTGAAGAAGTCTTTAGGGTTAAA-GTCGATAGGCAGACTTGAGA-TGAGGCAGTCTCTAGAATC
127 GATGAGGCAGTCTCTAAGGTCAAACCT-GAAAGGCAGACTTGAGAGT-AAGAAGTCTCTAGGGTC
* * * *** * *
1203494 AAAGCCGACAGGCAGA-TCTAA-GATGAGGTAGTCTCTAAGGTCAAAGTGGACAGGCAAACTTG
190 AAAGTCGACAAGCAGACT-TAAGGGTGAAAAAGTCTCTAAGGTCAAAGTCGACAGGCAGACTTG
* ** * * * * ** * **
1203556 AGATGT-GGCGA-TCTCCAAGGTCAAAGTCGACAGGCAGACTTGAGATGAGGTAGTCTTTTGGGT
1 AG--GTAAGAAAGTCTCTAGGGTCAAAGTCGACAGGCAAACTTAAGATGAGACAGTCTCTAAGGT
* * * * ** ** * * * * **
1203619 TAAAGCCGAAAAGCAGACTAGAAATAAGGCAA-TCTCTAGGGTCAAAGCTGACAAGCAGACTAAA
64 CAAAGCTGATAGGCAGACTA-AGGTAA-AAAAGTCTCTAAGGTCAAAGCCGATAGGCAGACTTGA
* * ** * * * * * * * *
1203683 GGTAAGAAAGTCTCCAGGGTCAAA-GTCGACAA-GAAGACTTAAGCGTGAAGAAGAT-TCCAAGG
127 GATGAGGCAGTCTCTAAGGTCAAACCT-GA-AAGGCAGACTTGAGAGT-AAGAAG-TCTCTAGGG
* * * * * *
1203745 TCAAAATCGACAGGCAGACATAA-GGT-AAGAAAGCCT-TCAAGGTCAAAGTCGATAGGTAGACT
188 TCAAAGTCGACAAGCAGACTTAAGGGTGAA-AAAGTCTCT-AAGGTCAAAGTCGACAGGCAGACT
*
1203807 TA
251 TG
** * * * * *
1203809 AGGTAAGAAAGTCT-TCAGGGTCAAAACCGACAAGTAGACATAAGGGTGAAGA-AGTCTCCT-AG
1 AGGTAAGAAAGTCTCT-AGGGTCAAAGTCGACAGGCAAACTTAA-GATG-AGACAGTCT-CTAAG
* * ** * ** * *** * * * * *
1203871 GCCAAAGCTGACAACCACACTTGGGATGAGTTAGTCTCCAAGATAAAAGCTGACAGGCATG--TT
62 GTCAAAGCTGATAGGCAGACTAAGG-TAAAAAAGTCTCTAAGGTCAAAGCCGATAGGCA-GACTT
* * ** * * * * * * *
1203934 GAAGGTAAGAAAATCTCCACGGTCAAAGCC-GAGAGGCAGACTTAAGGGTAAAGAAGTCTCCA-G
125 G-AGATGAGGCAGTCTCTAAGGTCAAA-CCTGAAAGGCAGACTTGAGAGT-AAGAAGTCTCTAGG
* * * * ** * **
1203997 GTCAAAGTCGATAGGTAGACTTGAA--ATGAGGCAA-TCTCTAGGGTCAAAG-CTGACAGATAGA
187 GTCAAAGTCGACAAGCAGACTT-AAGGGTGA-AAAAGTCTCTAAGGTCAAAGTC-GACAGGCAGA
1204058 -TTG
249 CTTG
* * * * * * *
1204061 AAGGTAAGAAAGTCTAC-AGGGTCAAAGCCGACAAGCAGACTAAAGGGTGAAGA-AGTTTCTAGG
1 -AGGTAAGAAAGTCT-CTAGGGTCAAAGTCGACAGGCAAACTTAA-GATG-AGACAGTCTCTAAG
** * * * * * ** * * * * * *
1204124 GTCAAAGCCAACAGGCAAACTTGAGATGAAGCAGTATCTAGGGTCAAGGCCAACAGGCAGACTAG
62 GTCAAAGCTGATAGGCAGAC-TAAGGTAAAAAAGTCTCTAAGGTCAAAGCCGATAGGCAGACTTG
* * * * * * * * *
1204189 AGATAAGGCAGTCTCTAAAGTCAAA-GTCGATAGGTAAAC-TGA-AGGTAAAAAAGCCTTTAGGG
126 AGATGAGGCAGTCTCTAAGGTCAAACCT-GAAAGGCAGACTTGAGA-GT-AAGAAGTCTCTAGGG
* * * *** * *
1204251 TTAAAGTTGACAGGCAGACTTAAGGGTGAAGTGGTCTCGAAGGTTAAAG-CAGACAGGCAGACTT
188 TCAAAGTCGACAAGCAGACTTAAGGGTGAAAAAGTCTCTAAGGTCAAAGTC-GACAGGCAGACTT
*
1204315 A
252 G
* * * * * * * * * *
1204316 AGGTAGGAAAGTCTCCAGGATCAATG-CTGACAGGTAGACTTAA-ATTTATAAAGTCTCCAAGGT
1 AGGTAAGAAAGTCTCTAGGGTCAAAGTC-GACAGGCAAACTTAAGA-TGAGACAGTCTCTAAGGT
* * * ** * * *
1204379 CAAAGCCGACAAGCAGACTTAAGGGTGGAGAAGTCTTTAAGGTCAAAGTCGATAGGCAGACTTGA
64 CAAAGCTGATAGGCAGAC-TAA-GGTAAAAAAGTCTCTAAGGTCAAAGCCGATAGGCAGACTTGA
* ** ** *
1204444 GATGATGG-AGTCTCTAGGGTCAAAACC-GATCGGCAGACTAAAGA-TAAGCAAGTGTCTAGGGT
127 GATGA-GGCAGTCTCTAAGGTC-AAACCTGAAAGGCAGACTTGAGAGTAAG-AAGTCTCTAGGGT
* * * * * *** *
1204506 CACAGCCGACAGGCAGACTTAATGGTGAACAAGTCTCCGGGGTCAATG-CGGACAGGCAGAC-TG
189 CAAAGTCGACAAGCAGACTTAAGGGTGAAAAAGTCTCTAAGGTCAAAGTC-GACAGGCAGACTTG
* * * * * * * * *
1204569 AAGGTAAGAAAGTCTCCAAGGTCAAAGTCGACAAGCAAACTAAAGGTAAGAAAGTCTCTGAGGTT
1 -AGGTAAGAAAGTCTCTAGGGTCAAAGTCGACAGGCAAACTTAAGATGAGACAGTCTCTAAGGTC
* ** * * **** * * * *
1204634 AAA-ATCGATAACCAGACTTGAGATAAGGCTGTCTCTAGGGTCAAAGCCGACAGACAGACTTAAG
65 AAAGCT-GATAGGCAGAC-TAAGGTAAAAAAGTCTCTAAGGTCAAAGCCGATAGGCAGACTTGAG
** * * * * *
1204698 ATGAGGTTGTCT-TGAGGGTCAAATCC--AACAAGCAAAC-TGATG-GTAAGAAAGTCTCCAAGG
128 ATGAGGCAGTCTCT-AAGGTCAAA-CCTGAA-AGGCAGACTTGA-GAGTAAG-AAGTCTCTAGGG
* * * * *
1204758 TCAAAGAT-GACAGGCAGACATAAGGGTGAAGAAGTCTCCT-AGGTTAAAG-CTGACAAGCAGAC
188 TCAAAG-TCGACAAGCAGACTTAAGGGTGAAAAAGTCT-CTAAGGTCAAAGTC-GACAGGCAGAC
1204820 TTG
250 TTG
* * ** * * * * * * * *
1204823 AGATGAGTTAGCCTCCAAGGTAAAAGCCGACAGGCAGACTGAAGGTATGA-A-AATCTCTAAGGT
1 AGGTAAGAAAGTCTCTAGGGTCAAAGTCGACAGGCAAACTTAA-G-ATGAGACAGTCTCTAAGGT
* * * * * * * *
1204886 CAAAGCCGAGAGGCAAACTTAAGGGTAAAGAAGTCTCTAGGGTCAAAG-C--T-GACA-AGTAGA
64 CAAAGCTGATAGGCAGAC-TAA-GGTAAAAAAGTCTCTAAGGTCAAAGCCGATAGGCAGACTTGA
* * * * * * *
1204946 GATGAGGTAGTGTCT-AGAGTCAAAGCC-GACAGGTAAAC-TGA-AGGTAAAAAGTCTAC-AAGG
127 GATGAGGCAGTCTCTAAG-GTCAAA-CCTGAAAGGCAGACTTGAGA-GTAAGAAGTCT-CTAGGG
* * * * *
1205006 TCAAAATCGACAGGCAGATTTAAGGGTGAAGAAGTCTCT-AGTGTCAAAG-CTGACAGGGAGACT
188 TCAAAGTCGACAAGCAGACTTAAGGGTGAAAAAGTCTCTAAG-GTCAAAGTC-GACAGGCAGACT
1205069 TG
251 TG
* * * * * * * * * * * * * * * *
1205071 AGATGAGGATGTTTCCAAGGCCAAAGAT-TACAGGTAGA-GTAGAGATAAGGCGGTCTCTAAGAT
1 AGGTAAGAAAGTCTCTAGGGTCAAAG-TCGACAGGCAAACTTA-AGATGAGACAGTCTCTAAGGT
* * * * * * *
1205134 CAAAGCTGACAGGCA-ACTGAAAGTAAGAAAGTCTCT-AGTGTTAAAGCCGACAGGCAGATTTAA
64 CAAAGCTGATAGGCAGACT-AAGGTAAAAAAGTCTCTAAG-GTCAAAGCCGATAGGCAGACTTGA
* * * * * ** *
1205197 GGGTGAAGAAGTCTCCAAGGTTAAAGCC--AATAGGCAGAAATAAG-GTAAGAAAGTCTCTAGGG
127 -GATGAGGCAGTCTCTAAGGTCAAA-CCTGAA-AGGCAGACTTGAGAGTAAG-AAGTCTCTAGGG
* * ** * * * * *
1205259 ACAAAGCTGGA-AATTAGACTTAAGTGTGAAGAAGTCTCCAGGGTCAAAGTCGACAGGCAGGCTT
188 TCAAAG-TCGACAAGCAGACTTAAGGGTGAAAAAGTCTCTAAGGTCAAAGTCGACAGGCAGACTT
*
1205323 A
252 G
* * * * * * * *
1205324 AGATGAGGCAA-TCTCTCGAGGTC-AAGTCGAC-GAGCAGACTTGAGATGAGGCAGTCTCCAAGG
1 AGGT-AAGAAAGTCTCTAG-GGTCAAAGTCGACAG-GCAAACTTAAGATGAGACAGTCTCTAAGG
** * * * * * * * *
1205386 TCAAAATTGATCGGTAGACTAAAAGTAAGAAAGTCTCT-AGTGTCACAGCCGATGGGCAGACATA
63 TCAAAGCTGATAGGCAGACT-AAGGTAAAAAAGTCTCTAAG-GTCAAAGCCGATAGGCAGACTTG
* * * * * *
1205450 AGGGTGA-ACAAGTCTC-AAGGTCAAAGCTGATAGGCAAACTTAAG-GTAAGAAAGTCTCTAGGG
126 A-GATGAGGC-AGTCTCTAAGGTCAAACCTGAAAGGCAGACTTGAGAGTAAG-AAGTCTCTAGGG
* ** * * ** * *
1205512 TCAAAG-CTAACAAGCAGACTGGA-GGTAAAAAAGTCTC-CAGGTTCAAAACCGATATGCAGACT
188 TCAAAGTC-GACAAGCAGACTTAAGGGTGAAAAAGTCTCTAAGG-TCAAAGTCGACAGGCAGACT
1205574 TG
251 TG
* * ** * * * ** * * * * * * *
1205576 AGATGAGGCATTTTGTAGGGTCAAAACCGATAGGCAGACTTGAGATGAGGCTGTCTCCAAAGTCA
1 AGGTAAGAAAGTCTCTAGGGTCAAAGTCGACAGGCAAACTTAAGATGAGACAGTCTCTAAGGTCA
* * * * * * * * * ** *
1205641 AAGCTGACAAGCAAATTGATGGTAAGAACGTCTCCAAGGTTATGGTCGATAGGCAGACTTGAGAT
66 AAGCTGATAGGCAGACT-AAGGTAAAAAAGTCTCTAAGGTCAAAGCCGATAGGCAGACTTGAGAT
* * * * * * * * * *
1205706 GAGGTAGTCTCCAGGGTCATAGCC-GATAGGAAGACTTAAGA-TGAGTTAGTTTCTAGGGTCAAA
130 GAGGCAGTCTCTAAGGTCA-AACCTGAAAGGCAGACTTGAGAGTAAG-AAGTCTCTAGGGTCAAA
* * ** * * * * *
1205769 G-CGAACAAGCAGACTTGAGATGTG--GCAGTCTCCAAGGTTAAAGCCGACAAGCAGAC-TA
193 GTCG-ACAAGCAGACTTAAG-GGTGAAAAAGTCTCTAAGGTCAAAGTCGACAGGCAGACTTG
* * * * * * * * * * *
1205827 ATGGTAAGAAAGTCTCTAGGGTCAAAGCCGATAGGTAGACTTAAGGGTAAAAAAATCTCCAGGGT
1 A-GGTAAGAAAGTCTCTAGGGTCAAAGTCGACAGGCAAACTTAA-GATGAGACAGTCTCTAAGGT
* * * * ** * * *
1205892 CAAAG-TCGATAAGTAAACTTATGGTAGGAAAGTCTCTAGGGTCAAAGTCGATAGGCAAACTTGA
64 CAAAGCT-GATAGGCAGAC-TAAGGTAAAAAAGTCTCTAAGGTCAAAGCCGATAGGCAGACTTGA
* * * * * ** *
1205956 GATGAGGTAGTCTCCAAGGTGAAAGCTGACAGGCAGACTAAAG-GTAAAAAAGTCTCCT-GGGTC
127 GATGAGGCAGTCTCTAAGGTCAAACCTGAAAGGCAGACTTGAGAGT-AAGAAGTCT-CTAGGGTC
* * * * * * * **
1206019 AAAATTGACAAGCAGACTTAAGGGTGAAGAAGTCTCGAGGGTTAAAG-CTAACAAAC-GAACTTG
190 AAAGTCGACAAGCAGACTTAAGGGTGAAAAAGTCTCTAAGGTCAAAGTC-GACAGGCAG-ACTTG
* * ** * * ** * * * * * *
1206082 AGATATGGCAGTCTCCCAAGGTCAAAACCGATAAGCAGACTTGAGATGAGACAATCTCTAGGGTC
1 AGGTAAGAAAGTCT-CTAGGGTCAAAGTCGACAGGCAAACTTAAGATGAGACAGTCTCTAAGGTC
* * * * *** * *
1206147 AAAGCCGATAGGCAAACTTGAGATAAGGTAGTCT-TTAGAGTCAAAGCCGACAGGCAGACTTGAG
65 AAAGCTGATAGGCAGAC-TAAGGTAAAAAAGTCTCTAAG-GTCAAAGCCGATAGGCAGACTTGAG
* ** ** * **
1206211 ATGAGGTAGTCTCTAAGGTCAAAGCC-GACCGATAGAC-TGA-AGATAAGAAAGTCTTTAATGTC
128 ATGAGGCAGTCTCTAAGGTCAAA-CCTGAAAGGCAGACTTGAGAG-TAAG-AAGTCTCTAGGGTC
* * * * * *
1206273 AAAGTCGACAAGCAGAC-TAAAGGT-AAGAAAGTCTC-CAGGATCAAA-ACTGATAGGTATACTT
190 AAAGTCGACAAGCAGACTTAAGGGTGAA-AAAGTCTCTAAGG-TCAAAGTC-GACAGGCAGACTT
*
1206334 A
252 G
* * ** * * * * * * *** * * * *
1206335 AGATGAGGTAGGCTCCATGGTCAAAGCCGATAAGTGGACTTGAGATGAGATAGTCTCGAAGTTCA
1 AGGTAAGAAAGTCTCTAGGGTCAAAGTCGACAGGCAAACTTAAGATGAGACAGTCTCTAAGGTCA
* * * * * * *
1206400 AAGCCGATAGAC-GAACTGAAGGTCAGAAAGTCTCCAAGGTCAAAGCTGATAGGCAGACTTGAGT
66 AAGCTGATAGGCAG-ACT-AAGGTAAAAAAGTCTCTAAGGTCAAAGCCGATAGGCAGACTTGAGA
* *
1206464 TGAGG-ATGTCTCCAAGGTTAAAGCC--AATAGGCAGAC-TGA-AGGTAAGAAAGTCTCTAGGGT
129 TGAGGCA-GTCTCTAAGGTCAAA-CCTGAA-AGGCAGACTTGAGA-GTAAG-AAGTCTCTAGGGT
* * * * * * * * * *
1206524 CAAAGCCGACCA-CAAACTTAAGGGTGAAGAAGTCTCCAGGGTTAAAGCCGATAGGCAGACTTA
189 CAAAGTCGACAAGCAGACTTAAGGGTGAAAAAGTCTCTAAGGTCAAAGTCGACAGGCAGACTTG
* * * * * * * **
1206587 AGATGAGGCAAGTCTCTAGGTTCAAAGCCGATAGGCAAACCTAAGATGAGGTAGTCTCTAAGGTC
1 AGGT-AAGAAAGTCTCTAGGGTCAAAGTCGACAGGCAAACTTAAGATGAGACAGTCTCTAAGGTC
* * ** * * * ****** * ** * *
1206652 AAAACGGGCAGGCAAACTTGAGATGTGGCGGTCT-TCAAGGTTAAAGTTGACAAGCAGAC-TGA-
65 AAAGCTGATAGGCAGAC-TAAGGTAAAAAAGTCTCT-AAGGTCAAAGCCGATAGGCAGACTTGAG
* ** * * * *
1206714 AGGGAAGAAAGT-T-TACATGGTCAAAGCC--AACAAGCAAACTT-ATGGGTGAAGAAATCTCTA
128 A-TG-AGGCAGTCTCTA-A-GGTCAAA-CCTGAA-AGGCAGACTTGA-GAGT-AAGAAGTCTCTA
* * * * * * * * *
1206774 GGGTCAAAGTTGACAGGTAGATTTATA--GT-AAGAAAGTCTCTAGGGTAAAAGCCGATAGGCAA
185 GGGTCAAAGTCGACAAGCAGACTTA-AGGGTGAA-AAAGTCTCTAAGGTCAAAGTCGACAGGCAG
1206836 ACTTG
248 ACTTG
* * * * * * * **
1206841 AGATGAGATAGTCTAC-AAGGTCAAAGCCGACAGGCAGACTTGAGATGAGGTAGTCTCTAAGGTC
1 AGGTAAGAAAGTCT-CTAGGGTCAAAGTCGACAGGCAAACTTAAGATGAGACAGTCTCTAAGGTC
* * * * *** * * * ** *
1206905 AAAGCCGAAAGGCAGACTTAAGATGAGGCAGTCTTTAAGGTCAAAGCTGACAGGCAGACTAAAGG
65 AAAGCTGATAGGCAGAC-TAAGGTAAAAAAGTCTCTAAGGTCAAAGCCGATAGGCAGACTTGAGA
* ** * * * * * *
1206970 TAAGAAAGTCTCCAACGTCAAAGCC-CAAAGGCAGACTT-AAAGGTGAAGAAGT-TTTCAAGGTC
129 TGAGGCAGTCTCTAAGGTCAAA-CCTGAAAGGCAGACTTGAGA-GT-AAGAAGTCTCT-AGGGTC
* * * * * *
1207032 AAAGCCGACAGGCAGACTTAA-GAT-AAGAAAGCCTC-AATGGTCAAAG-CTGACAAGTAGACTT
190 AAAGTCGACAAGCAGACTTAAGGGTGAA-AAAGTCTCTAA-GGTCAAAGTC-GACAGGCAGACTT
*
1207093 A
252 G
* * * ** * * * * * **
1207094 AGGTAAGATAGCCGTC-AGGATCAAAACCGATAGGTAGACATAAGGGTGAAGA-AGTCTCTTGGG
1 AGGTAAGAAAGTC-TCTAGGGTCAAAGTCGACAGGCAAACTTAA-GATG-AGACAGTCTCTAAGG
* * * * * * *** * * * *
1207157 TTAAAGCTGACAAGCAGACTTGAGATGAGTTAGTCTCTAAGGTAAAAGCTGACAAGCAGAC-TGA
63 TCAAAGCTGATAGGCAGAC-TAAGGTAAAAAAGTCTCTAAGGTCAAAGCCGATAGGCAGACTTG-
* * ** * * * * * * * *
1207221 AGGTAAGAAAGTCTCTAAGGTCAAA-GTTAAGAGGCAAACTTAAGGGTAAAGAAGCCTCGAAGGT
126 AGATGAGGCAGTCTCTAAGGTCAAACCTGAA-AGGCAGACTTGAGAGT-AAGAAGTCTCTAGGGT
* * * * *** * * *
1207285 CAAAGCCGA-GAGTCAGACTTGA-GATGAGGTAGTCTCTAGGGTCAAAG-CTAACAAGCAGAC-T
189 CAAAGTCGACAAG-CAGACTTAAGGGTGAAAAAGTCTCTAAGGTCAAAGTC-GACAGGCAGACTT
1207346 G
252 G
* * * * *
1207347 AGGGTAAGAAAGTCTATAGGGTCAAAG-CTGAAAGGCAAACTTAAGGGTGGTGA-AGTCTCTAGG
1 A-GGTAAGAAAGTCTCTAGGGTCAAAGTC-GACAGGCAAACTTAA-GAT-GAGACAGTCTCTAAG
* * * * *** * * *
1207410 GTCAAAGCTGATAGGAAGACTTGAGATGAGGCAGTCTCCAATGTC-AAGCCGACAGGCAGACTTG
62 GTCAAAGCTGATAGGCAGAC-TAAGGTAAAAAAGTCTCTAAGGTCAAAGCCGATAGGCAGACTTG
* * * * *
1207474 AGATGAGGCAGTCT-TCAGGTTAAAGCC-GACAA-GCAAAC-TGA-AGGTAAGAAAGTCTCCAAG
126 AGATGAGGCAGTCTCTAAGGTCAAA-CCTGA-AAGGCAGACTTGAGA-GTAAG-AAGTCTCTAGG
* * * * * * * * * * * * *
1207534 TTTAAAGCCAACAGGCAGACATAAGGGTGAAGAAGTCTCCAAGGTTAAGGCCGATAGACAGACTT
187 GTCAAAGTCGACAAGCAGACTTAAGGGTGAAAAAGTCTCTAAGGTCAAAGTCGACAGGCAGACTT
*
1207599 A
252 G
* * * * * * * * * * *
1207600 AGGCAAGAAAGTCTCCAAGGTTAAA-TCTGACTGGTAGACTTAAGGTTAGAAAGTCTC-CAGAGT
1 AGGTAAGAAAGTCTCTAGGGTCAAAGTC-GACAGGCAAACTTAAGATGAGACAGTCTCTAAG-GT
* * * * * * * *
1207663 CAAAGCCGACAAGCAGACTTAGGGGTGAAGAAGTCTC-CAGAGTCAAAGCC-AGAGGCAGACTTG
64 CAAAGCTGATAGGCAGAC-TA-AGGTAAAAAAGTCTCTAAG-GTCAAAGCCGATAGGCAGACTTG
* * * * * * * *
1207726 AAATGAGGTAGTCTCCAAAGTCAAAGCC-GATAGGCAGACTTGAGA-TGAGGCAA-TCTCCAAGG
126 AGATGAGGCAGTCTCTAAGGTCAAA-CCTGAAAGGCAGACTTGAGAGT-AAG-AAGTCTCTAGGG
* ** * * * * *
1207788 TCAAA-CCTGACTGGCAGACTGAA-GGT-AAGAAAGTCTCT-AGTGGCACAA-CCAACAGGCAAA
188 TCAAAGTC-GACAAGCAGACTTAAGGGTGAA-AAAGTCTCTAAG-GTCA-AAGTCGACAGGCAGA
*
1207848 CTTA
249 CTTG
* * ** * * ** * * * * * *
1207852 AGGTGAA-CAAGTCTCCAAGTTTC-AAGCCGATAGATAAACTGAAGGTAAGAAACG-CTCCAGGG
1 AGGT-AAGAAAGTCT-CTAGGGTCAAAGTCGACAGGCAAACTTAAGATGAGACA-GTCTCTAAGG
* * * * * * * * * *
1207914 TCAAAGCCGGTAAGCAGACTAAAAGTAAAAAAGTCTCTAGGGTCAAAACCGACAAGTAGACTTTA
63 TCAAAGCTGATAGGCAGACT-AAGGTAAAAAAGTCTCTAAGGTCAAAGCCGATAGGCAGACTTGA
* * * ** * *
1207979 GATGAGGCTGTCTCTAAGGTTAATGCC-GACAA-GCA-AAATGA-AGGTAAGAAAGTCTCCAAGG
127 GATGAGGCAGTCTCTAAGGTCAA-ACCTGA-AAGGCAGACTTGAGA-GTAAG-AAGTCTCTAGGG
* * * * *
1208040 TCAAAGAT-GATAGGCAGATTTAATGGTGAAAAAGTCTCTAAGGTCATCTAGGGTCAAAGCTGAC
188 TCAAAG-TCGACAAGCAGACTTAAGGGTGAAAAAGTCTCTAAGGTCA---A-AGT-----C-GAC
* *
1208104 AGGTAGACTTA
242 AGGCAGACTTG
* * ** * * * * ** * *
1208115 AGATGAGGCAGTCTCTAGGGTCAAAGCCGACAAGTAGAC-TAGAGATGAGGTAGTCTCCAAGATC
1 AGGTAAGAAAGTCTCTAGGGTCAAAGTCGACAGGCAAACTTA-AGATGAGACAGTCTCTAAGGTC
* * * * * * * * * *
1208179 AAAGCCGACAAGTAGGCAGAAGGTAAGAAAGTCTCTAGGGTCAAAGCTGACAGGCAGACTTGAGA
65 AAAGCTGATAGGCAGAC-TAAGGTAAAAAAGTCTCTAAGGTCAAAGCCGATAGGCAGACTTGAGA
* * * * * *
1208244 TGAGGTAGTCTCTAGGGTCAAAGCC-GAACGACAAACTTGAGA-TAAGGCAA-TCTCTGGGGTCA
129 TGAGGCAGTCTCTAAGGTCAAA-CCTGAAAGGCAGACTTGAGAGTAA-G-AAGTCTCTAGGGTCA
* * ** * ** * * *
1208306 AAGTCGACAGGCAGGC-TAAATGT-AAGAAAGTCTCTAGGGTCATGGCCGACAGGCAAACTTA
191 AAGTCGACAAGCAGACTTAAGGGTGAA-AAAGTCTCTAAGGTCAAAGTCGACAGGCAGACTTG
* * * * * * * * * *
1208367 AGGGTGAAG-AAGTCTCCAAGGTCAAAGCCGATAGGCAGACTTAAGGTAATAAAGTCTCTAGGGT
1 A-GGT-AAGAAAGTCTCTAGGGTCAAAGTCGACAGGCAAACTTAAGATGAGACAGTCTCTAAGGT
* * * *
1208431 CAAAG-TCGACT-GGAAGACTTAAGGTAAGAAAGTCTCT-AGGATCAAAGCTGATAGGTAGACTT
64 CAAAGCT-GA-TAGGCAGAC-TAAGGTAAAAAAGTCTCTAAGG-TCAAAGCCGATAGGCAGACTT
* * ** * * * **
1208493 GAAATGAGGCAGTCTTTTGGGTTAAAACC-GACAGGAAGA-TTGA-AGGCGAGAAAGTCTAC-AG
125 GAGATGAGGCAGTCTCTAAGG-TCAAACCTGAAAGGCAGACTTGAGA-GTAAG-AAGTCT-CTAG
*
1208554 GGTCAAAGCCGACAAGCAGACTTAAGGGT-AAAGAAGTCT
186 GGTCAAAGTCGACAAGCAGACTTAAGGGTGAAA-AAGTCT
1208593 GAAAGCTTAT
Statistics
Matches: 4874, Mismatches: 1330, Indels: 697
0.71 0.19 0.10
Matches are distributed among these distances:
245 1 0.00
246 22 0.00
247 12 0.00
248 113 0.02
249 36 0.01
250 17 0.00
251 217 0.04
252 1242 0.25
253 1858 0.38
254 1105 0.23
255 63 0.01
256 2 0.00
258 2 0.00
261 2 0.00
262 31 0.01
263 143 0.03
264 7 0.00
265 1 0.00
ACGTcount: A:0.36, C:0.17, G:0.28, T:0.20
Consensus pattern (252 bp):
AGGTAAGAAAGTCTCTAGGGTCAAAGTCGACAGGCAAACTTAAGATGAGACAGTCTCTAAGGTCA
AAGCTGATAGGCAGACTAAGGTAAAAAAGTCTCTAAGGTCAAAGCCGATAGGCAGACTTGAGATG
AGGCAGTCTCTAAGGTCAAACCTGAAAGGCAGACTTGAGAGTAAGAAGTCTCTAGGGTCAAAGTC
GACAAGCAGACTTAAGGGTGAAAAAGTCTCTAAGGTCAAAGTCGACAGGCAGACTTG
Found at i:1202164 original size:169 final size:170
Alignment explanation
Indices: 1200392--1207614 Score: 1098
Period size: 169 Copynumber: 42.9 Consensus size: 170
1200382 TAACAAGCAG
* ** * * * * *
1200392 ACTTGAGATGAGTTAGTCTCCAAGGTAAAAGCTGACAGGCAGACTGAA-GGTAAGAAAGTCTCTA
1 ACTTAAGATGAGACAGTCTCTAGGGTCAAAGCTGATAGGCAGTCTGAAGGGTAAGAAAGTCTCTA
* * * * * * *
1200456 GGGTCAAAGCCGAGAGGTAGACTTAAGGGTAAAGAAGTCTCCAAGGTCAAAG-CTGACAAGCAGA
66 AGGTCAAAGCCGACAGGCAGACTTAA-GGTGAAGAAATCTCTAAGGTCAAAGTCTGACAGGCAGA
* * * * *
1200520 CTTGAGATGATG-TAGTCTCTAGGGTCAAAG-CTGATAGGCAG
130 CTTAAGGT-AAGAAAGTCTCTAGGGTCAAAGTC-GATAGGCAA
* * * * * * * * * * *
1200561 ACTGAGGGTAAGAAAGTCTAC-AGGGTCAAAGCTGACAAGCAGACTTAAGGGTGATG-AAGTCTT
1 ACTTAAGATGAGACAGTCT-CTAGGGTCAAAGCTGATAGGCAGTCTGAAGGGT-AAGAAAGTCTC
* * * * * * * * * * * *
1200624 TAGGGTCAAAACCGATAGGCAGACTTGAGATGAGGCAAA-CTCCAATGTTAAATTCT-ATAAGCA
64 TAAGGTCAAAGCCGACAGGCAGACTTAAGGTGAAG-AAATCTCTAAGGTCAAAGTCTGACAGGCA
* * * ** * * * *
1200687 GACTTGAGATGAGGTAGTCTCCAAGGTCAAAGCCGACAGGCAA
128 GACTTAAGGTAAGAAAGTCTCTAGGGTCAAAGTCGATAGGCAA
* * * * * * * * * * * * * *
1200730 ACTGAAGGTAAGAAAGTCT-TCAAGTTTAAAGTTCACAAGCAGACTTAAAGGTGAAG-AAGTCTA
1 ACTTAAGATGAGACAGTCTCT-AGGGTCAAAGCTGATAGGCAGTCTGAAGGGT-AAGAAAGTCT-
* ** * * * * *
1200793 C-AAGGTTAAAATCGATAGGCAAACTTAAGGT-AAGAAAGTCTCTAGGGTCAAAG-CTGATAGGT
63 CTAAGGTCAAAGCCGACAGGCAGACTTAAGGTGAAGAAA-TCTCTAAGGTCAAAGTCTGACAGGC
* ** * *
1200855 AGACTTAA-GTTAGAAAGTCTAGAGGGTCAAA-TCCGACAAGCAA
127 AGACTTAAGGTAAGAAAGTCTCTAGGGTCAAAGT-CGATAGGCAA
* * * * * * * * **
1200898 ACTTAAGGGTGAAGA-AGTCTCTAAGGTCAAAGCCGACAAGCAGACCTG-A-GATTAGGTAGTCT
1 ACTTAA-GATG-AGACAGTCTCTAGGGTCAAAGCTGATAGGCAG-TCTGAAGGGTAAGAAAGTCT
* * * * * * * * * * * * **
1200960 TTAGGGTCAAAGCTGACAGGTAGACTTGAGAT-ATCGCAATCTCCAGGGTCAGAG-CTGACCGAT
63 CTAAGGTCAAAGCCGACAGGCAGACTTAAGGTGA-AGAAATCTCTAAGGTCAAAGTCTGACAGGC
* * ** * * * * *
1201023 AGACTAAAGGTAAGAAAGTCTCCAGTATCACAGCCGACAAGCAG
127 AGACTTAAGGTAAGAAAGTCTCTAGGGTCAAAGTCGATAGGCAA
* * * *
1201067 ACTTAAGGGTGA-ACAAGTCTCCAGTGTCAAAGCTGATAGGCAGACTGAA-GGTAAGAAAGTCT-
1 ACTTAA-GATGAGAC-AGTCTCTAGGGTCAAAGCTGATAGGCAGTCTGAAGGGTAAGAAAGTCTC
* * * * * * *
1201129 TTAGCGTCAAAGTCGACA-ACTAGACTGATGGT-AAGAAAGTCTCT-AGAGTCAAA-ACTGATAG
64 TAAG-GTCAAAGCCGACAGGC-AGACTTAAGGTGAAGAAA-TCTCTAAG-GTCAAAGTCTGACAG
* * * * ** * * * * *
1201190 GTAGACTTGAGATGAGGCAGTCTCTGGGGTTAAAG-CTAACAGG-TA
125 GCAGACTTAAGGTAAGAAAGTCTCTAGGGTCAAAGTC-GATAGGCAA
* * * * * * **** *
1201235 ACTTGAGATGAGGCTGTCTCTAGGGTCAAAGCCGACAAGCAAAAGGAA-GGTAAGAAAGTCTCCA
1 ACTTAAGATGAGACAGTCTCTAGGGTCAAAGCTGATAGGCAGTCTGAAGGGTAAGAAAGTCTCTA
* * * * * * *
1201299 AGGTCAAAGACGACAGGCAGACTTAAAGGT-AAAAAAGTCTATAGGGTCAAA-ACCGACAAGCAG
66 AGGTCAAAGCCGACAGGCAGACTT-AAGGTGAAGAAA-TCTCTAAGGTCAAAGTCTGACAGGCAG
* * * * ** * * * *
1201362 ATTTGAGATGAGGCAGTTTCTAGGGTCGAAG-CTGACAGGCAG
129 ACTTAAGGTAAGAAAGTCTCTAGGGTCAAAGTC-GATAGGCAA
** * * * * * * * * *
1201404 AC-TAGAGATGAGGTAGTCTCCAAGATCAAAG-TCGACAGGTAGGC-AAAAGGTGAGAAAGTCTC
1 ACTTA-AGATGAGACAGTCTCTAGGGTCAAAGCT-GATAGGCAGTCTGAAGGGTAAGAAAGTCTC
* * * * * * * *
1201466 CAAGGTCAAAGCTGACAGGCAGACAT-AGGATGAGGCAGTCTCTAAGGTCAAAG-CTGAAAGACA
64 TAAGGTCAAAGCCGACAGGCAGACTTAAGG-TGAAGAAATCTCTAAGGTCAAAGTCTGACAGGCA
* * **
1201529 AACTTAAGATAAGGTAGTCTCTAGGGTCAAAGTCGATAGGCAA
128 GACTTAAGGTAAGAAAGTCTCTAGGGTCAAAGTCGATAGGCAA
* * * * * * *
1201572 ACTAAATATAAGAAAGTCTTTAGGGTCAAAG-TCGACT-GGCAGAT-TAAAGGGTGAAGACA-TC
1 ACTTAAGATGAGACAGTCTCTAGGGTCAAAGCT-GA-TAGGCAG-TCTGAAGGGT-AAGAAAGTC
* * * * * *
1201633 TCCACGGTCAAAGCTGACTGGCAGACTTAAGGT-AACAAAGTCTCCAA-GTCAAAGTC-GACTAG
62 TCTAAGGTCAAAGCCGACAGGCAGACTTAAGGTGAAGAAA-TCTCTAAGGTCAAAGTCTGAC-AG
* * * *
1201695 G-AGACTTAAGGTAAGAAAGTCTCTAAGGCCAAAG-CTGACAGGTAA
125 GCAGACTTAAGGTAAGAAAGTCTCTAGGGTCAAAGTC-GATAGGCAA
* * * *
1201740 ACTTGAGATGAGGCAGTCTTTAGGGTCAAAGCTGATAGGCAAAT-TGAA-GGTAAGAAAGTCTAC
1 ACTTAAGATGAGACAGTCTCTAGGGTCAAAGCTGATAGGC-AGTCTGAAGGGTAAGAAAGTCT-C
* * ** * * * * *
1201803 -AGGGTCAAAGTCGACAGGCAGACACAAGGGTGAAGAAGTCTCTATGGTTAAA-TCTTATAGGCA
64 TAAGGTCAAAGCCGACAGGCAGACTTAA-GGTGAAGAAATCTCTAAGGTCAAAGTCTGACAGGCA
* * * ** *
1201866 GACTTAAGGTTAGAAAGTCTCCAAGGTCAAAACCGATAGGCAG
128 GACTTAAGGTAAGAAAGTCTCTAGGGTCAAAGTCGATAGGCAA
* * * * * *
1201909 AGTTGAGATGTGGCAGTCTCTAGGGTTAAACCTGATAGGCA-TACTGAA-GGTAAGAAAGT-T-T
1 ACTTAAGATGAGACAGTCTCTAGGGTCAAAGCTGATAGGCAGT-CTGAAGGGTAAGAAAGTCTCT
* * *
1201970 ACATGGTCAAAGTCGACAAGCAGACTTAAGGGTGAAGAAATTTCTAAGGTCAAAGTC-GACAGGC
65 A-A-GGTCAAAGCCGACAGGCAGACTTAA-GGTGAAGAAATCTCTAAGGTCAAAGTCTGACAGGC
* *
1202034 AGACTTAGGGTAAGAAAGTCTCTAGGGTCAACGTCGATAGGCAA
127 AGACTTAAGGTAAGAAAGTCTCTAGGGTCAAAGTCGATAGGCAA
* * *
1202078 ACTTAAGATGAGACAGTCTCTAAGGTGAAAGCTGATAGGCAGTCT-AAGGGTAAAAAAGTCTCTA
1 ACTTAAGATGAGACAGTCTCTAGGGTCAAAGCTGATAGGCAGTCTGAAGGGTAAGAAAGTCTCTA
* * * * * * * *
1202142 AGGTGAAAGCCGATAGGCAGACTTGAGATGAGGCAGTCTCTAAGGTCAAAG-CTGAAAGGCAGAC
66 AGGTCAAAGCCGACAGGCAGACTTAAGGTGAAGAAATCTCTAAGGTCAAAGTCTGACAGGCAGAC
* * * * * **
1202206 TTGAGATTAAG-TAGTCTCTAGGGTCAAAGTCGGTAAGCGG
131 TTAAG-GTAAGAAAGTCTCTAGGGTCAAAGTCGATAGGCAA
* * * * *
1202246 ACTTAAGGGTGAAAAAGTCTCTAAGGTCAAAG-TCGATAGGCAGACTTG-A-GGTAAGAAAGTCT
1 ACTTAA-GATGAGACAGTCTCTAGGGTCAAAGCT-GATAGGCAGTC-TGAAGGGTAAGAAAGTCT
* * * * * * * * * * * * *
1202308 CTAGGGTCAAAGCCCACAGGTAAACTTGAGATGAGGCAGTTTTTAGGGTCAAAGTC-GACAGGTA
63 CTAAGGTCAAAGCCGACAGGCAGACTTAAGGTGAAGAAATCTCTAAGGTCAAAGTCTGACAGGCA
* * * * *
1202372 GACTAAAGGTAAAAAAGTCT-TCAAGGTCAAAG-CTGACAGGCAG
128 GACTTAAGGTAAGAAAGTCTCT-AGGGTCAAAGTC-GATAGGCAA
* * * * * * * * *
1202415 ACTTAAAGGTGAAGA-AGTCTCCAAGGTCAAAGTTTACAGGCAGACTTAA-GGTAAAAAAG-CTC
1 ACTT-AAGATG-AGACAGTCTCTAGGGTCAAAGCTGATAGGCAGTCTGAAGGGTAAGAAAGTCTC
* * * * * * * **
1202477 CAGGGTCAAAGCTGACA-GCTAGACTTGAGATG-AGACAGTCTCTAGGGTCAAAG-CTG-CAATC
64 TAAGGTCAAAGCCGACAGGC-AGACTTAAGGTGAAGA-AATCTCTAAGGTCAAAGTCTGACAGGC
** * * * * *
1202538 AGACAGAAGGTAAGAAAGTCTATCA-AGTCAAAGCCAACTA-GCAG
127 AGACTTAAGGTAAGAAAGTCTCT-AGGGTCAAAGTCGA-TAGGCAA
* * * * * *
1202582 ACATAATGGTGAAGA-AGTCTTTAGGGTTAAAG-TCGATAGGCAGACTGAA-GGTAAGAAAGTTT
1 ACTTAA-GATG-AGACAGTCTCTAGGGTCAAAGCT-GATAGGCAGTCTGAAGGGTAAGAAAGTCT
* * * * * * * * ** * * * * * * *
1202644 CTATGGTCAAAACAGATAGGTAGAATTGAGATGTGGCAGTCACCAAGGTC-AAGGCTGGCAGACA
63 CTAAGGTCAAAGCCGACAGGCAGACTTAAGGTGAAGAAATCTCTAAGGTCAAAGTCTGACAGGCA
* * * ** * *
1202708 GACTTGAGATGAGGCAGTCTCTAGGGTCAAAGAT-GAAAGGCAG
128 GACTTAAGGTAAGAAAGTCTCTAGGGTCAAAG-TCGATAGGCAA
* * * * *
1202751 ACTTAAGATGAAGTA-A-TCTCTAGGGTCAAAGCCGACAGGTAGACTTAAGGGTGAA-AAAGTCT
1 ACTTAAGATG-AG-ACAGTCTCTAGGGTCAAAGCTGATAGGCAGTCTGAAGGGT-AAGAAAGTCT
* * * * * **
1202813 CCAAGGTCAAAGCCAACAGGCAGACTTAAGGT-AAGAAAGTCTCTAGGGTGAAAG-CCGACAGAT
63 CTAAGGTCAAAGCCGACAGGCAGACTTAAGGTGAAGAAA-TCTCTAAGGTCAAAGTCTGACAGGC
* * * * ** * * * *
1202876 AAACTTGAGATGAGGCAGTCTTTAAGGTCAAAGTCGATAGACAG
127 AGACTTAAGGTAAGAAAGTCTCTAGGGTCAAAGTCGATAGGCAA
* * * * * * * *
1202920 ACTAAAGGTAAGAAAGTCTCAAAGGTCAAAGCTGACAGGCAGACTTG-AGGGTGAAG-AAGTCTC
1 ACTTAAGATGAGACAGTCTCTAGGGTCAAAGCTGATAGGCAGTC-TGAAGGGT-AAGAAAGTCTC
* * * * * * *
1202983 TAAGGTCAAAGCCAACAGGCAGACTTAAGGTAAAAAAATTTCTAGGGTCAAAG-CCGACAGGTAG
64 TAAGGTCAAAGCCGACAGGCAGACTTAAGGTGAAGAAATCTCTAAGGTCAAAGTCTGACAGGCAG
* * * * * * *
1203047 AC-TAGAGATGAGACAGTTTCTAGGGTCAAAG-CTACT-GTCAG
129 ACTTA-AGGTAAGAAAGTCTCTAGGGTCAAAGTCGA-TAGGCAA
* ** *
1203088 ACTAAAGGTATGA-A-AGTCTAC-AGGGTCAAAGCCAATAGGCAGACAT-AAGGGTAA-AGAAGT
1 ACTTAA-G-ATGAGACAGTCT-CTAGGGTCAAAGCTGATAGGCAGTC-TGAAGGGTAAGA-AAGT
* * * * * * * * * * * * *
1203148 CTCTAGGGTTAAAGTCGATAGGGAGACTAAAGGT-AAGAAGGTCTCCAGGGTCAAAAT-TAATAA
61 CTCTAAGGTCAAAGCCGACAGGCAGACTTAAGGTGAAGAA-ATCTCTAAGGTCAAAGTCTGACAG
* * * * * * * * * *
1203211 GTAGAATTGAGATGAAG-TAGTCTCCAAGGTTAAAG-CTGATAGGTAG
125 GCAGACTTAAGGT-AAGAAAGTCTCTAGGGTCAAAGTC-GATAGGCAA
** * * * * ** *
1203257 ACTGGAGATGAGATAGTTTCTAGGGTCAAACCCGATAGGCAAACT-AAAGGTAA-AAAGGTCTCT
1 ACTTAAGATGAGACAGTCTCTAGGGTCAAAGCTGATAGGCAGTCTGAAGGGTAAGAAA-GTCTCT
* * * * * * * ** * ** * *
1203320 AGGGTCAAAGTCGACAGGCAAAGTTGAGATGAGGCTATCTCTAAGGTTAAAG-CAAATAGGTAGA
65 AAGGTCAAAGCCGACAGGCAGACTTAAGGTGAAGAAATCTCTAAGGTCAAAGTCTGACAGGCAGA
* * * * *
1203384 CTGAAGGTAAAAAAGTCTCTAAGGTCAAAG-C--TGGCCGCAG
130 CTTAAGGTAAGAAAGTCTCTAGGGTCAAAGTCGATAG--GCAA
* * * * * * **
1203424 ACTTAAGGGTGAAGA-AGTCTTTAGGGTTAAAG-TCGATAGGCAGACTTG-A-GATGAGGCAGTC
1 ACTTAA-GATG-AGACAGTCTCTAGGGTCAAAGCT-GATAGGCAGTC-TGAAGGGTAAGAAAGTC
* * * * * *
1203485 TCT-AGAATCAAAGCCGACAGGCAGA-TCTAAGATGAGGTAGTCTCTAAGGTCAAAGT-GGACAG
62 TCTAAG-GTCAAAGCCGACAGGCAGACT-TAAGGTGAAGAAATCTCTAAGGTCAAAGTCTGACAG
* * * ** * * * *
1203547 GCAAACTTGAGATGT-GGCGA-TCTCCAAGGTCAAAGTCGACAGGCAG
125 GCAGACTT-A-AGGTAAGAAAGTCTCTAGGGTCAAAGTCGATAGGCAA
* ** * * * * * * * * *
1203593 ACTTGAGATGAGGTAGTCTTTTGGGTTAAAGCCGAAAAGCAGACTAGAA--ATAAGGCAA-TCTC
1 ACTTAAGATGAGACAGTCTCTAGGGTCAAAGCTGATAGGCAGTCT-GAAGGGTAA-GAAAGTCTC
* * * * * * * *
1203655 TAGGGTCAAAGCTGACAAGCAGACTAAAGGT-AAGAAAGTCTCCAGGGTCAAAGTC-GACAAGAA
64 TAAGGTCAAAGCCGACAGGCAGACTTAAGGTGAAGAAA-TCTCTAAGGTCAAAGTCTGACAGGCA
* * * * *
1203718 GACTTAAGCGTGAAG-AAGAT-TCCAAGGTCAAAATCGACAGGCAG
128 GACTTAAG-GT-AAGAAAG-TCTCTAGGGTCAAAGTCGATAGGCAA
* * * * * * * * *
1203762 ACATAAGGTAAGAAAGCCT-TCAAGGTCAAAG-TCGATAGGTAGACTTAA-GGTAAGAAAGTCT-
1 ACTTAAGATGAGACAGTCTCT-AGGGTCAAAGCT-GATAGGCAGTCTGAAGGGTAAGAAAGTCTC
* * * * * * * **
1203823 TCAGGGTCAAAACCGACAAGTAGACATAAGGGTGAAGAAGTCTCCT-AGGCCAAAG-CTGACAAC
64 T-AAGGTCAAAGCCGACAGGCAGACTTAA-GGTGAAGAAATCT-CTAAGGTCAAAGTCTGACAGG
* * * ** * * * * *
1203886 CACACTT-GGGATGAGTTAGTCTCCAAGATAAAAG-CTGACAGGC-A
126 CAGACTTAAGG-TAAGAAAGTCTCTAGGGTCAAAGTC-GATAGGCAA
** * * * * * * * * * *
1203930 TGTTGAAGGTAAGAAAATCTCCACGGTCAAAGCCGAGAGGCAGACTTAAGGGTAA-AGAAGTCTC
1 ACTT-AAGATGAGACAGTCTCTAGGGTCAAAGCTGATAGGCAGTCTGAAGGGTAAGA-AAGTCTC
* * * * * * * * **
1203994 -CAGGTCAAAGTCGATAGGTAGACTTGAA-ATGAGGCAATCTCTAGGGTCAAAG-CTGACAGATA
64 TAAGGTCAAAGCCGACAGGCAGACTT-AAGGTGAAGAAATCTCTAAGGTCAAAGTCTGACAGGCA
* * * *
1204056 GA-TTGAAGGTAAGAAAGTCTAC-AGGGTCAAAGCCGACAAGCAG
128 GACTT-AAGGTAAGAAAGTCT-CTAGGGTCAAAGTCGATAGGCAA
* * * ** * ** * * *
1204099 ACTAAAGGGTGAAGA-AGTTTCTAGGGTCAAAGCCAACAGGCAAACTTG-A-GATGAAG-CAGTA
1 ACTTAA-GATG-AGACAGTCTCTAGGGTCAAAGCTGATAGGCAGTC-TGAAGGGT-AAGAAAGTC
* * * * * * * *
1204160 TCTAGGGTCAAGGCCAACAGGCAGAC-TAGAGAT-AAGGCAGTCTCTAAAGTCAAAGTC-GATAG
62 TCTAAGGTCAAAGCCGACAGGCAGACTTA-AGGTGAA-GAAATCTCTAAGGTCAAAGTCTGACAG
* * * * * * * * * *
1204222 GTAAACTGAAGGTAAAAAAGCCTTTAGGGTTAAAGTTGACAGGCAG
125 GCAGACTTAAGGTAAGAAAGTCTCTAGGGTCAAAGTCGATAGGCAA
* ** * * * * * * * *
1204268 ACTTAAGGGTGA-AGTGGTCTCGAAGGTTAAAGCAGACAGGCAGACTTAA-GGTAGGAAAGTCTC
1 ACTTAA-GATGAGA-CAGTCTCTAGGGTCAAAGCTGATAGGCAGTCTGAAGGGTAAGAAAGTCTC
* * * * ** * * * * *
1204331 -CAGGATCAATGCTGACAGGTAGACTTAAATTTATA-AAGTCTCCAAGGTCAAAG-CCGACAAGC
64 TAAGG-TCAAAGCCGACAGGCAGACTTAAGGTGA-AGAAATCTCTAAGGTCAAAGTCTGACAGGC
* * * *
1204393 AGACTTAAGGGT-GGAGAAGTCTTTAAGGTCAAAGTCGATAGGCAG
127 AGACTTAA-GGTAAGA-AAGTCTCTAGGGTCAAAGTCGATAGGCAA
* * * * * * * * * *
1204438 ACTTGAGATGATG-GAGTCTCTAGGGTCAAAACCGATCGGCAGACT-AAAGATAAGCAAGTGTCT
1 ACTTAAGATGA-GACAGTCTCTAGGGTCAAAGCTGATAGGCAGTCTGAAGGGTAAGAAAGTCTCT
* * * * *** * *
1204501 AGGGTCACAGCCGACAGGCAGACTTAATGGTGAACAAGTCTCCGGGGTCAATG-CGGACAGGCAG
65 AAGGTCAAAGCCGACAGGCAGACTTAA-GGTGAAGAAATCTCTAAGGTCAAAGTCTGACAGGCAG
* * * * *
1204565 ACTGAAGGTAAGAAAGTCTCCAAGGTCAAAGTCGACAAGCAA
129 ACTTAAGGTAAGAAAGTCTCTAGGGTCAAAGTCGATAGGCAA
* * * * * * * ** * * ***
1204607 ACTAAAGGTAAGAAAGTCTCTGAGGTTAAAATC-GATAACCAGACTTG-A-GATAAGGCTGTCTC
1 ACTTAAGATGAGACAGTCTCT-AGGGTCAAAGCTGATAGGCAGTC-TGAAGGGTAAGAAAGTCTC
* * * * *** * ** *
1204669 TAGGGTCAAAGCCGACAGACAGACTTAAGATGAGGTTGTCT-TGAGGGTCAAA-TCCAACAAGCA
64 TAAGGTCAAAGCCGACAGGCAGACTTAAGGTGAAGAAATCTCT-AAGGTCAAAGTCTGACAGGCA
* * * * * * *
1204732 AACTGATGGTAAGAAAGTCTCCAAGGTCAAAGAT-GACAGGCAG
128 GACTTAAGGTAAGAAAGTCTCTAGGGTCAAAG-TCGATAGGCAA
* * * * * * * * ** *
1204775 ACATAAGGGTGAAGA-AGTCTCCTA-GGTTAAAGCTGACAAGCAGACTTG-A-GATGAGTTAGCC
1 ACTTAA-GATG-AGACAGTCT-CTAGGGTCAAAGCTGATAGGCAGTC-TGAAGGGTAAGAAAGTC
* * * * * *
1204836 TCCAAGGTAAAAGCCGACAGGCAGACTGAAGGT-ATGAAAATCTCTAAGGTCAAAG-CCGAGAGG
62 TCTAAGGTCAAAGCCGACAGGCAGACTTAAGGTGAAG-AAATCTCTAAGGTCAAAGTCTGACAGG
* *
1204899 CAAACTTAAGGGTAA-AGAAGTCTCTAGGGTCAAAG-C--T-GAC-A
126 CAGACTTAA-GGTAAGA-AAGTCTCTAGGGTCAAAGTCGATAGGCAA
* ** * * * * * **
1204940 A-GTAGAGATGAGGTAGTGTCTAGAGTCAAAGCCGACAGGTAAACTGAA-GGTAA-AAAGTCTAC
1 ACTTA-AGATGAGACAGTCTCTAGGGTCAAAGCTGATAGGCAGTCTGAAGGGTAAGAAAGTCT-C
** * * *
1205002 -AAGGTCAAAATCGACAGGCAGATTTAAGGGTGAAGAAGTCTCT-AGTGTCAAAG-CTGACAGGG
64 TAAGGTCAAAGCCGACAGGCAGACTTAA-GGTGAAGAAATCTCTAAG-GTCAAAGTCTGACAGGC
* * * * * * * * * * * * *
1205064 AGACTTGAGATGAGGATGTTTCCAAGGCCAAAGAT-TACAGGTAG
127 AGACTTAAGGTAAGAAAGTCTCTAGGGTCAAAG-TCGATAGGCAA
* * * * * * * * *
1205108 A-GTAGAGATAAGGCGGTCTCTAAGATCAAAGCTGACAGGCA-ACTGAA-AGTAAGAAAGTCTCT
1 ACTTA-AGATGAGACAGTCTCTAGGGTCAAAGCTGATAGGCAGTCTGAAGGGTAAGAAAGTCTCT
* * * * * ** *
1205170 -AGTGTTAAAGCCGACAGGCAGATTTAAGGGTGAAGAAGTCTCCAAGGTTAAAG-CCAATAGGCA
65 AAG-GTCAAAGCCGACAGGCAGACTTAA-GGTGAAGAAATCTCTAAGGTCAAAGTCTGACAGGCA
** * * *** *
1205233 GAAATAAGGTAAGAAAGTCTCTAGGGACAAAGCTGGA-AATTAG
128 GACTTAAGGTAAGAAAGTCTCTAGGGTCAAAG-TCGATAGGCAA
* * * * * * * *
1205276 ACTTAAGTGTGAAGA-AGTCTCCAGGGTCAAAG-TCGACAGGCAGGCTTAA-GATGAGGCAA-TC
1 ACTTAAG-ATG-AGACAGTCTCTAGGGTCAAAGCT-GATAGGCAGTCTGAAGGGT-AAGAAAGTC
* * * * * * * * *
1205337 TCTCGAGGTC-AAGTCGAC-GAGCAGACTTGAGATGAGGCAGTCTCCAAGGTCAAAAT-TGATC-
62 TCT-AAGGTCAAAGCCGACAG-GCAGACTTAAGGTGAAGAAATCTCTAAGGTCAAAGTCTGA-CA
* * * * * * * *
1205398 GGTAGACTAAAAGTAAGAAAGTCTCTAGTGTCACAGCCGATGGGCAG
124 GGCAGACTTAAGGTAAGAAAGTCTCTAGGGTCAAAGTCGATAGGCAA
* * * ** *
1205445 ACATAAGGGTGA-ACAAGTCTC-AAGGTCAAAGCTGATAGGCAAACTTAA-GGTAAGAAAGTCTC
1 ACTTAA-GATGAGAC-AGTCTCTAGGGTCAAAGCTGATAGGCAGTCTGAAGGGTAAGAAAGTCTC
* ** * ** * * * * * *
1205507 TAGGGTCAAAGCTAACAAGCAGACTGGAGGT-AAAAAAGTCTC-CAGGTTCAAA-ACCGATATGC
64 TAAGGTCAAAGCCGACAGGCAGACTTAAGGTGAAGAAA-TCTCTAAGG-TCAAAGTCTGACAGGC
* * * ** * * * ** *
1205569 AGACTTGAGATGAGGCATTTTGTAGGGTCAAAACCGATAGGCAG
127 AGACTTAAGGTAAGAAAGTCTCTAGGGTCAAAGTCGATAGGCAA
* * * * ** * * * * * *
1205613 ACTTGAGATGAGGCTGTCTCCAAAGTCAAAGCTGACAAGCAAAT-TG-ATGGTAAGAACGTCTCC
1 ACTTAAGATGAGACAGTCTCTAGGGTCAAAGCTGATAGGC-AGTCTGAAGGGTAAGAAAGTCTCT
* ** * * * * * * * * * * * * *
1205676 AAGGTTATGGTCGATAGGCAGACTTGAGATGAGGTAGTCTCCAGGGTCATAG-CCGATAGGAAGA
65 AAGGTCAAAGCCGACAGGCAGACTTAAGGTGAAGAAATCTCTAAGGTCAAAGTCTGACAGGCAGA
* * ** * * * *
1205740 CTTAAGATGAGTTAGTTTCTAGGGTCAAAG-CGAACAAGCAG
130 CTTAAGGTAAGAAAGTCTCTAGGGTCAAAGTCG-ATAGGCAA
* * * * * * * * * * *
1205781 ACTTGAGATGTGGCAGTCTCCAAGGTTAAAGCCGACAAGCAGACT-AATGGTAAGAAAGTCTCTA
1 ACTTAAGATGAGACAGTCTCTAGGGTCAAAGCTGATAGGCAGTCTGAAGGGTAAGAAAGTCTCTA
* * * * * * * * * * *
1205845 GGGTCAAAGCCGATAGGTAGACTTAAGGGTAAAAAAATCTCCAGGGTCAAAGTC-GATAAGTAAA
66 AGGTCAAAGCCGACAGGCAGACTTAA-GGTGAAGAAATCTCTAAGGTCAAAGTCTGACAGGCAGA
* *
1205909 CTTATGGTAGGAAAGTCTCTAGGGTCAAAGTCGATAGGCAA
130 CTTAAGGTAAGAAAGTCTCTAGGGTCAAAGTCGATAGGCAA
* ** * * * * * * *
1205950 ACTTGAGATGAGGTAGTCTCCAAGGTGAAAGCTGACAGGCAGACT-AAAGGTAAAAAAGTCTCCT
1 ACTTAAGATGAGACAGTCTCTAGGGTCAAAGCTGATAGGCAGTCTGAAGGGTAAGAAAGTCT-CT
* *** * * * * * * **
1206014 -GGGTCAAAATTGACAAGCAGACTTAAGGGTGAAGAAGTCTCGAGGGTTAAAG-CTAACAAAC-G
65 AAGGTCAAAGCCGACAGGCAGACTTAA-GGTGAAGAAATCTCTAAGGTCAAAGTCTGACAGGCAG
* * * ** * * ** * *
1206076 AACTTGAGATATGGCAGTCTCCCAAGGTCAAAACCGATAAGCAG
129 -ACTTAAGGTAAGAAAGTCT-CTAGGGTCAAAGTCGATAGGCAA
* * * ** * **
1206120 ACTTGAGATGAGACAATCTCTAGGGTCAAAGCCGATAGGCAAACTTG-A-GATAAGGTAGTCT-T
1 ACTTAAGATGAGACAGTCTCTAGGGTCAAAGCTGATAGGCAGTC-TGAAGGGTAAGAAAGTCTCT
* * * * * * * * **
1206182 TAGAGTCAAAGCCGACAGGCAGACTTGAGATGAGGTAGTCTCTAAGGTCAAAG-CCGACCGATAG
65 AAG-GTCAAAGCCGACAGGCAGACTTAAGGTGAAGAAATCTCTAAGGTCAAAGTCTGACAGGCAG
* * * ** * * *
1206246 ACTGAAGATAAGAAAGTCTTTAATGTCAAAGTCGACAAGCAG
129 ACTTAAGGTAAGAAAGTCTCTAGGGTCAAAGTCGATAGGCAA
* * * * * * * * * * * ** * *
1206288 ACTAAAGGTAAGAAAGTCTCCAGGATCAAAACTGATAGGTA-TACTTAA-GATGAGGTAGGCTCC
1 ACTTAAGATGAGACAGTCTCTAGGGTCAAAGCTGATAGGCAGT-CTGAAGGGTAAGAAAGTCTCT
* * * ** * * * * * * * *
1206351 ATGGTCAAAGCCGATAAGTGGACTTGAGATG-AGATAGTCTCGAAGTTCAAAG-CCGATAGAC-G
65 AAGGTCAAAGCCGACAGGCAGACTTAAGGTGAAGA-AATCTCTAAGGTCAAAGTCTGACAGGCAG
* * * * *
1206413 AACTGAAGGTCAGAAAGTCTCCAAGGTCAAAG-CTGATAGGCAG
129 -ACTTAAGGTAAGAAAGTCTCTAGGGTCAAAGTC-GATAGGCAA
* * * * * * ** *
1206456 ACTTGAGTTGAGGA-TGTCTCCAAGGTTAAAGCCAATAGGCAGACTGAA-GGTAAGAAAGTCTCT
1 ACTTAAGATGA-GACAGTCTCTAGGGTCAAAGCTGATAGGCAGTCTGAAGGGTAAGAAAGTCTCT
* * * * * * * *
1206519 AGGGTCAAAGCCGACCA--CAAACTTAAGGGTGAAGAAGTCTCCAGGGTTAAAG-CCGATAGGCA
65 AAGGTCAAAGCCGA-CAGGCAGACTTAA-GGTGAAGAAATCTCTAAGGTCAAAGTCTGACAGGCA
* * * * *
1206581 GACTTAAGATGAGGCAAGTCTCTAGGTTCAAAGCCGATAGGCAA
128 GACTTAAGGT-AAGAAAGTCTCTAGGGTCAAAGTCGATAGGCAA
* ** * * * ** ** * ***
1206625 ACCTAAGATGAGGTAGTCTCTAAGGTCAAAACGGGCAGGCAAACTTG-AGATGT--GGCGGTCT-
1 ACTTAAGATGAGACAGTCTCTAGGGTCAAAGCTGATAGGCAGTC-TGAAG-GGTAAGAAAGTCTC
* ** * * ** *
1206686 TCAAGGTTAAAGTTGACAAGCAGACTGAAGG-GAAGAAAGT-T-TACATGGTCAAAG-CCAACAA
64 T-AAGGTCAAAGCCGACAGGCAGACTTAAGGTGAAGAAA-TCTCTA-A-GGTCAAAGTCTGACAG
* * * * * *
1206747 GCAAACTTATGGGTGAAGAAA-TCTCTAGGGTCAAAGTTGACAGGTAG
125 GCAGACTTA-AGGT-AAGAAAGTCTCTAGGGTCAAAGTCGATAGGCAA
* * * * * ** * * *
1206794 ATTTATAG-TAAGAAAGTCTCTAGGGTAAAAGCCGATAGGCAAACTTG-A-GATGAGATAGTCTA
1 ACTTA-AGATGAGACAGTCTCTAGGGTCAAAGCTGATAGGCAGTC-TGAAGGGTAAGAAAGTCT-
* * * * * * *
1206856 C-AAGGTCAAAGCCGACAGGCAGACTTGAGATGAGGTAGTCTCTAAGGTCAAAG-CCGAAAGGCA
63 CTAAGGTCAAAGCCGACAGGCAGACTTAAGGTGAAGAAATCTCTAAGGTCAAAGTCTGACAGGCA
* * ** * * * *
1206919 GACTTAAGATGAGGCAGTCTTTAAGGTCAAAG-CTGACAGGCAG
128 GACTTAAGGTAAGAAAGTCTCTAGGGTCAAAGTC-GATAGGCAA
* * * * * ** ** * * * * *
1206962 ACTAAAGGTAAGAAAGTCTCCAACGTCAAAGCCCAAAGGCAGACTTAAAGGTGAAG-AAGT-TTT
1 ACTTAAGATGAGACAGTCTCTAGGGTCAAAGCTGATAGGCAGTCTGAAGGGT-AAGAAAGTCTCT
* * * *
1207025 CAAGGTCAAAGCCGACAGGCAGACTTAAGAT-AAGAAAGC-CTCAATGGTCAAAG-CTGACAAGT
65 -AAGGTCAAAGCCGACAGGCAGACTTAAGGTGAAGAAATCTCT-AA-GGTCAAAGTCTGACAGGC
* * * ** * *
1207087 AGACTTAAGGTAAGATAGCCGTC-AGGATCAAAACCGATAGGTAG
127 AGACTTAAGGTAAGAAAGTC-TCTAGGGTCAAAGTCGATAGGCAA
* * * * * * * * * **
1207131 ACATAAGGGTGAAGA-AGTCTCTTGGGTTAAAGCTGACAAGCAGACTTG-A-GATGAGTTAGTCT
1 ACTTAA-GATG-AGACAGTCTCTAGGGTCAAAGCTGATAGGCAGTC-TGAAGGGTAAGAAAGTCT
* * * * * *
1207193 CTAAGGTAAAAGCTGACAAGCAGACTGAAGGT-AAGAAAGTCTCTAAGGTCAAAGT-TAAGAGGC
63 CTAAGGTCAAAGCCGACAGGCAGACTTAAGGTGAAGAAA-TCTCTAAGGTCAAAGTCTGACAGGC
* * * * * * * *
1207256 AAACTTAAGGGTAA-AGAAGCCTCGAAGGTCAAAGCCGAGAGTCAG
127 AGACTTAA-GGTAAGA-AAGTCTCTAGGGTCAAAGTCGATAGGCAA
* ** * * * * *
1207301 ACTTGAGATGAGGTAGTCTCTAGGGTCAAAGCTAACAAGCAGACTG-AGGGTAAGAAAGTCTATA
1 ACTTAAGATGAGACAGTCTCTAGGGTCAAAGCTGATAGGCAGTCTGAAGGGTAAGAAAGTCTCTA
* * * * ** * * * *
1207365 GGGTCAAAGCTGAAAGGCAAACTTAAGGGTGGTGAAGTCTCTAGGGTCAAAG-CTGATAGGAAGA
66 AGGTCAAAGCCGACAGGCAGACTTAA-GGTGAAGAAATCTCTAAGGTCAAAGTCTGACAGGCAGA
* * * ** * ** * * *
1207429 CTTGAGATGAGGCAGTCTCCAATGTC-AAGCCGACAGGCAG
130 CTTAAGGTAAGAAAGTCTCTAGGGTCAAAGTCGATAGGCAA
* * * * * * ** *
1207469 ACTTGAGATGAGGCAGTCT-TCA-GGTTAAAGCCGACAAGCAAACTGAA-GGTAAGAAAGTCTCC
1 ACTTAAGATGAGACAGTCTCT-AGGGTCAAAGCTGATAGGCAGTCTGAAGGGTAAGAAAGTCTCT
* * * * * * * * * * *
1207531 AAGTTTAAAGCCAACAGGCAGACATAAGGGTGAAGAAGTCTCCAAGGT-TAAGGCCGATAGACAG
65 AAGGTCAAAGCCGACAGGCAGACTTAA-GGTGAAGAAATCTCTAAGGTCAAAGTCTGACAGGCAG
*
1207595 ACTTAAGGCAAGAAAGTCTC
129 ACTTAAGGTAAGAAAGTCTC
1207615 CAAGGTTAAA
Statistics
Matches: 5232, Mismatches: 1450, Indels: 746
0.70 0.20 0.10
Matches are distributed among these distances:
163 51 0.01
164 58 0.01
165 6 0.00
166 14 0.00
167 373 0.07
168 1779 0.34
169 2455 0.47
170 461 0.09
171 33 0.01
172 2 0.00
ACGTcount: A:0.36, C:0.16, G:0.28, T:0.20
Consensus pattern (170 bp):
ACTTAAGATGAGACAGTCTCTAGGGTCAAAGCTGATAGGCAGTCTGAAGGGTAAGAAAGTCTCTA
AGGTCAAAGCCGACAGGCAGACTTAAGGTGAAGAAATCTCTAAGGTCAAAGTCTGACAGGCAGAC
TTAAGGTAAGAAAGTCTCTAGGGTCAAAGTCGATAGGCAA
Found at i:1202798 original size:547 final size:548
Alignment explanation
Indices: 1202159--1203224 Score: 1559
Period size: 547 Copynumber: 1.9 Consensus size: 548
1202149 AGCCGATAGG
* * * *
1202159 CAGACTTGAGATGAGGCAGTCTCTAAGGTCAAAGCTGAAAGGCAGACTTGAGATTAAGTAGTCTC
1 CAGACTTGAGATGAGGCAGTCTCTAAGGTCAAAGATGAAAGGCAGACTTAAGATGAAGTAATCTC
* ** * * * * *
1202224 TAGGGTCAAAGTCGGTAAGCGGACTTAAGGGTGAAAAAGTCTCTAAGGTCAAAGTCGATAGGCAG
66 TAGGGTCAAAGCCGACAAGCAGACTTAAGGGTGAAAAAGTCTCCAAGGTCAAAGCCAACAGGCAG
* * * *
1202289 ACTTGAGGTAAGAAAGTCTCTAGGGTCAAAGCCCACAGGTAAACTTGAGATGAGGCAGTTTTTAG
131 ACTTAAGGTAAGAAAGTCTCTAGGGTCAAAGCCCACAGATAAACTTGAGATGAGGCAGTCTTTAA
**
1202354 GGTCAAAGTCGACAGGTAGACTAAAGGTAAAAAAGTCTTC-AAGGTCAAAGCTGACAGGCAGACT
196 GGTCAAAGTCGACAGACAGACTAAAGGTAAAAAAGTC-TCAAAGGTCAAAGCTGACAGGCAGACT
***
1202418 TAAAGGTGAAGAAGTCTCCAAGGTCAAAGTTTACAGGCAGACTTAAGGT-AAAAAAGCTCCAGGG
260 TAAAGGTGAAGAAGTCTCCAAGGTCAAAGCCAACAGGCAGACTTAAGGTAAAAAAAGCTCCAGGG
* * *
1202482 TCAAAGCTGACAGCTAGACTTGAGATGAGACAGTCTCTAGGGTCAAAGCTGCAATCAGAC-AGAA
325 TCAAAGCCGACAGCTAGACTAGAGATGAGACAGTCTCTAGGGTCAAAGCTACAATCAGACTA-AA
* * *
1202546 GGTAAGAAAGTCTATCA-AGTCAAAGCCAACTA-GCAGACATAATGGTGAAGAAGTCTTTAGGGT
389 GGTAAGAAAGTCTA-CAGAGTCAAAGCCAA-TAGGCAGACATAAGGGTAAAGAAGTCTCTAGGGT
* * * * *
1202609 TAAAGTCGATAGGCAGACTGAAGGTAAGAAAGTTTCTATGGTCAAAA-CAGATAGGTAGAATTGA
452 TAAAGTCGATAGGCAGACTAAAGGTAAGAAAGTCTCCAGGGTCAAAATCA-ATAAGTAGAATTGA
1202673 GATGTGGCAGTCACCAAGGTCAAGGCTGGCAGA
516 GATGTGGCAGTCACCAAGGTCAAGGCTGGCAGA
*
1202706 CAGACTTGAGATGAGGCAGTCTCTAGGGTCAAAGATGAAAGGCAGACTTAAGATGAAGTAATCTC
1 CAGACTTGAGATGAGGCAGTCTCTAAGGTCAAAGATGAAAGGCAGACTTAAGATGAAGTAATCTC
* *
1202771 TAGGGTCAAAGCCGACAGGTAGACTTAAGGGTGAAAAAGTCTCCAAGGTCAAAGCCAACAGGCAG
66 TAGGGTCAAAGCCGACAAGCAGACTTAAGGGTGAAAAAGTCTCCAAGGTCAAAGCCAACAGGCAG
* *
1202836 ACTTAAGGTAAGAAAGTCTCTAGGGTGAAAGCCGACAGATAAACTTGAGATGAGGCAGTCTTTAA
131 ACTTAAGGTAAGAAAGTCTCTAGGGTCAAAGCCCACAGATAAACTTGAGATGAGGCAGTCTTTAA
* *
1202901 GGTCAAAGTCGATAGACAGACTAAAGGTAAGAAAGTCTCAAAGGTCAAAGCTGACAGGCAGACTT
196 GGTCAAAGTCGACAGACAGACTAAAGGTAAAAAAGTCTCAAAGGTCAAAGCTGACAGGCAGACTT
* * * ** *
1202966 GAGGGTGAAGAAGTCTCTAAGGTCAAAGCCAACAGGCAGACTTAAGGTAAAAAAATTTCTAGGGT
261 AAAGGTGAAGAAGTCTCCAAGGTCAAAGCCAACAGGCAGACTTAAGGTAAAAAAAGCTCCAGGGT
* * **
1203031 CAAAGCCGACAGGTAGACTAGAGATGAGACAGTTTCTAGGGTCAAAGCTACTGTCAGACTAAAGG
326 CAAAGCCGACAGCTAGACTAGAGATGAGACAGTCTCTAGGGTCAAAGCTACAATCAGACTAAAGG
* *
1203096 TATGAAAGTCTACAGGGTCAAAGCCAATAGGCAGACATAAGGGTAAAGAAGTCTCTAGGGTTAAA
391 TAAGAAAGTCTACAGAGTCAAAGCCAATAGGCAGACATAAGGGTAAAGAAGTCTCTAGGGTTAAA
* * *
1203161 GTCGATAGGGAGACTAAAGGTAAGAAGGTCTCCAGGGTCAAAATTAATAAGTAGAATTGAGATG
456 GTCGATAGGCAGACTAAAGGTAAGAAAGTCTCCAGGGTCAAAATCAATAAGTAGAATTGAGATG
1203225 AAGTAGTCTC
Statistics
Matches: 459, Mismatches: 54, Indels: 11
0.88 0.10 0.02
Matches are distributed among these distances:
546 2 0.00
547 278 0.61
548 177 0.39
549 2 0.00
ACGTcount: A:0.37, C:0.15, G:0.28, T:0.20
Consensus pattern (548 bp):
CAGACTTGAGATGAGGCAGTCTCTAAGGTCAAAGATGAAAGGCAGACTTAAGATGAAGTAATCTC
TAGGGTCAAAGCCGACAAGCAGACTTAAGGGTGAAAAAGTCTCCAAGGTCAAAGCCAACAGGCAG
ACTTAAGGTAAGAAAGTCTCTAGGGTCAAAGCCCACAGATAAACTTGAGATGAGGCAGTCTTTAA
GGTCAAAGTCGACAGACAGACTAAAGGTAAAAAAGTCTCAAAGGTCAAAGCTGACAGGCAGACTT
AAAGGTGAAGAAGTCTCCAAGGTCAAAGCCAACAGGCAGACTTAAGGTAAAAAAAGCTCCAGGGT
CAAAGCCGACAGCTAGACTAGAGATGAGACAGTCTCTAGGGTCAAAGCTACAATCAGACTAAAGG
TAAGAAAGTCTACAGAGTCAAAGCCAATAGGCAGACATAAGGGTAAAGAAGTCTCTAGGGTTAAA
GTCGATAGGCAGACTAAAGGTAAGAAAGTCTCCAGGGTCAAAATCAATAAGTAGAATTGAGATGT
GGCAGTCACCAAGGTCAAGGCTGGCAGA
Found at i:1202886 original size:211 final size:211
Alignment explanation
Indices: 1202619--1203076 Score: 467
Period size: 211 Copynumber: 2.2 Consensus size: 211
1202609 TAAAGTCGAT
* * * * *
1202619 AGGCAGACTGAAGGTAAGAAAGTTTCTATGGTCAAAACAGATAGGTAGAATTGAGATGTGGCAGT
1 AGGCAGACTGAAGGTAAGAAAGTCTCTAGGGTCAAAACAGACAGATAGAATTGAGATGAGGCAGT
* * ** * ** * *
1202684 CACCAAGGTC-AAGGCTGGCAGACAGACTTGAGATGAGGCAGTCTCTAGGGTCAAAGATGAAAGG
66 CACCAAGGTCAAAGTC-GACAGACAGACTAAAGATAAGAAAGTCTCAAAGGTCAAAGATGAAAGG
* * * * *
1202748 CAGACTT-AAGATGAAGTAA-TCTCTAGGGTCAAAGCCGACAGGTAGACTTAAGGGTGAAAAAGT
130 CAGACTTGAAGATGAAG-AAGTCTCTAAGGTCAAAGCCAACAGGCAGACTTAA-GGTAAAAAAAT
1202811 CTCCAAGGTCAAAGCCAAC
193 CTCCAAGGTCAAAGCCAAC
* * * *
1202830 AGGCAGACTTAAGGTAAGAAAGTCTCTAGGGTGAAAGCCGACAGATA-AACTTGAGATGAGGCAG
1 AGGCAGACTGAAGGTAAGAAAGTCTCTAGGGTCAAAACAGACAGATAGAA-TTGAGATGAGGCAG
*** * * * *
1202894 TCTTTAAGGTCAAAGTCGATAGACAGACTAAAGGTAAGAAAGTCTCAAAGGTCAAAGCTGACAGG
65 TCACCAAGGTCAAAGTCGACAGACAGACTAAAGATAAGAAAGTCTCAAAGGTCAAAGATGAAAGG
* * *
1202959 CAGACTTGAGGGTGAAGAAGTCTCTAAGGTCAAAGCCAACAGGCAGACTTAAGGTAAAAAAATTT
130 CAGACTTGAAGATGAAGAAGTCTCTAAGGTCAAAGCCAACAGGCAGACTTAAGGTAAAAAAATCT
* * *
1203024 CTAGGGTCAAAGCCGAC
195 CCAAGGTCAAAGCCAAC
* * * * *
1203041 AGGTAGACT-AGAGATGAGACAGTTTCTAGGGTCAAA
1 AGGCAGACTGA-AGGTAAGAAAGTCTCTAGGGTCAAA
1203077 GCTACTGTCA
Statistics
Matches: 200, Mismatches: 42, Indels: 10
0.79 0.17 0.04
Matches are distributed among these distances:
210 3 0.01
211 157 0.79
212 40 0.20
ACGTcount: A:0.37, C:0.16, G:0.28, T:0.19
Consensus pattern (211 bp):
AGGCAGACTGAAGGTAAGAAAGTCTCTAGGGTCAAAACAGACAGATAGAATTGAGATGAGGCAGT
CACCAAGGTCAAAGTCGACAGACAGACTAAAGATAAGAAAGTCTCAAAGGTCAAAGATGAAAGGC
AGACTTGAAGATGAAGAAGTCTCTAAGGTCAAAGCCAACAGGCAGACTTAAGGTAAAAAAATCTC
CAAGGTCAAAGCCAAC
Found at i:1206949 original size:211 final size:208
Alignment explanation
Indices: 1206428--1207092 Score: 524
Period size: 211 Copynumber: 3.1 Consensus size: 208
1206418 AAGGTCAGAA
* * * *
1206428 AGTCTCCAAGGTCAAAGCTGATAGGCAGACTTGAGTTGAGGATGTCTCCAAGGTTAAAGCC-AAT
1 AGTCT-CAAGGTCAAAGCCGACAGGCAGACTTGAGATGAGGA-GTCTCTAAGGTTAAAGCCGAA-
* * * * * *
1206492 AGGCAGACTGAAGGTAAGAAAGTCTCTAGGGTCAAAGCCGACCACAAACTTAAGGGTGAAGAAGT
63 AGGCAGACTGAA-GTGAGAAAGTCTTTAAGGTCAAAGCCAACAACAAACTTAAGGGTGAAGAAAT
* * * * * *
1206557 CTCCAGGGTTAAAGCCGATAGGCAGACTTAAGATGAGGCAAGTCTCTAGGTTCAAAGCCGATAGG
127 CTCCAGGGTCAAAGCCGACAGGCAGACTTAAGATGAAGAAAGTCTCTAGGGTAAAAGCCGATAGG
*
1206622 CAAACCTAAGATGAGGT
192 CAAACCTAAGATGAGAT
* * * * * * **
1206639 AGTCTCTAAGGTCAAAACGGGCAGGCAAACTTGAGATGTGGCGGTCT-TCAAGGTTAAAGTTGAC
1 AGTCTC-AAGGTCAAAGCCGACAGGCAGACTTGAGATGAGG-AGTCTCT-AAGGTTAAAGCCGA-
* *
1206703 AA-GCAGACTGAAGGGAAGAAAG--TTTACATGGTCAAAGCCAACAAGCAAACTTATGGGTGAAG
62 AAGGCAGACTGAAGTG-AGAAAGTCTTTA-A-GGTCAAAGCCAACAA-CAAACTTAAGGGTGAAG
* ** * *
1206765 AAATCTCTAGGGTCAAAGTTGACAGGTAGATTTATAG-T-AAGAAAGTCTCTAGGGTAAAAGCCG
123 AAATCTCCAGGGTCAAAGCCGACAGGCAGACTTA-AGATGAAGAAAGTCTCTAGGGTAAAAGCCG
* *
1206828 ATAGGCAAACTTGAGATGAGAT
187 ATAGGCAAACCTAAGATGAGAT
*
1206850 AGTCTACAAGGTCAAAGCCGACAGGCAGACTTGAGATGAGGTAGTCTCTAAGGTCAAAGCCGAAA
1 AGTCT-CAAGGTCAAAGCCGACAGGCAGACTTGAGATGAGG-AGTCTCTAAGGTTAAAGCCGAAA
* ** ** * * *
1206915 GGCAGACTTAAGATGAGGCAGTCTTTAAGGTCAAAGCTGACAGGCAGAC-TAAAGGT-AAGAAAG
64 GGCAGACTGAAG-TGAGAAAGTCTTTAAGGTCAAAGCCAACA-ACAAACTTAAGGGTGAAGAAA-
** * * * * * * *
1206978 TCTCCAACGTCAAAGCCCAAAGGCAGACTTAAAGGTGAAG-AAGT-TTTCAAGGTCAAAGCCGAC
126 TCTCCAGGGTCAAAGCCGACAGGCAGACTT-AAGATGAAGAAAGTCTCT-AGGGTAAAAGCCGAT
* * * *
1207041 AGGCAGACTTAAGATAAGAA
189 AGGCAAACCTAAGATGAGAT
* * * *
1207061 AGCCTCAATGGTCAAAGCTGACAAGTAGACTT
1 AGTCTCAA-GGTCAAAGCCGACAGGCAGACTT
1207093 AAGGTAAGAT
Statistics
Matches: 357, Mismatches: 74, Indels: 46
0.75 0.16 0.10
Matches are distributed among these distances:
209 9 0.03
210 37 0.10
211 252 0.71
212 52 0.15
213 7 0.02
ACGTcount: A:0.36, C:0.17, G:0.27, T:0.20
Consensus pattern (208 bp):
AGTCTCAAGGTCAAAGCCGACAGGCAGACTTGAGATGAGGAGTCTCTAAGGTTAAAGCCGAAAGG
CAGACTGAAGTGAGAAAGTCTTTAAGGTCAAAGCCAACAACAAACTTAAGGGTGAAGAAATCTCC
AGGGTCAAAGCCGACAGGCAGACTTAAGATGAAGAAAGTCTCTAGGGTAAAAGCCGATAGGCAAA
CCTAAGATGAGAT
Found at i:1208492 original size:42 final size:42
Alignment explanation
Indices: 1208086--1208580 Score: 311
Period size: 42 Copynumber: 11.8 Consensus size: 42
1208076 TCTAAGGTCA
* * * * **
1208086 TCTAGGGTCAAAGCTGACAGGTAGACTTAAGATGAGGCAGTC
1 TCTAGGGTCAAAGCCGACAGGCAGACTTAAGGTAAGAAAGTC
* * * * **
1208128 TCTAGGGTCAAAGCCGACAAGTAGAC-TAGAGATGAGGTAGTC
1 TCTAGGGTCAAAGCCGACAGGCAGACTTA-AGGTAAGAAAGTC
* * * * * * **
1208170 TCCAAGATCAAAGCCGACAAGTAGGCAGAAGGTAAGAAAGTC
1 TCTAGGGTCAAAGCCGACAGGCAGACTTAAGGTAAGAAAGTC
* * * * **
1208212 TCTAGGGTCAAAGCTGACAGGCAGACTTGAGATGAGGTAGTC
1 TCTAGGGTCAAAGCCGACAGGCAGACTTAAGGTAAGAAAGTC
* * * * *
1208254 TCTAGGGTCAAAGCCGA-ACGACAAACTTGAGATAAGGCAA-TC
1 TCTAGGGTCAAAGCCGACA-GGCAGACTTAAGGTAA-GAAAGTC
* * * * *
1208296 TCTGGGGTCAAAGTCGACAGGCAGGCTAAATGTAAGAAAGTC
1 TCTAGGGTCAAAGCCGACAGGCAGACTTAAGGTAAGAAAGTC
** *
1208338 TCTAGGGTCATGGCCGACAGGCAAACTTAAGGGTGAAG-AAGTC
1 TCTAGGGTCAAAGCCGACAGGCAGACTTAA-GGT-AAGAAAGTC
* * * *
1208381 TCCAAGGTCAAAGCCGATAGGCAGACTTAAGGTAATAAAGTC
1 TCTAGGGTCAAAGCCGACAGGCAGACTTAAGGTAAGAAAGTC
* * *
1208423 TCTAGGGTCAAAGTCGACTGGAAGACTTAAGGTAAGAAAGTC
1 TCTAGGGTCAAAGCCGACAGGCAGACTTAAGGTAAGAAAGTC
* * * * * * **
1208465 TCTAGGATCAAAGCTGATAGGTAGACTTGAA-ATGAGGCAGTC
1 TCTAGGGTCAAAGCCGACAGGCAGACTT-AAGGTAAGAAAGTC
* * * * * **
1208507 TTTTGGGTTAAAACCGACAGGAAGA-TTGAAGGCGAGAAAGTC
1 TCTAGGGTCAAAGCCGACAGGCAGACTT-AAGGTAAGAAAGTC
*
1208549 TAC-AGGGTCAAAGCCGACAAGCAGACTTAAGG
1 T-CTAGGGTCAAAGCCGACAGGCAGACTTAAGG
1208581 GTAAAGAAGT
Statistics
Matches: 348, Mismatches: 92, Indels: 26
0.75 0.20 0.06
Matches are distributed among these distances:
41 13 0.04
42 293 0.84
43 39 0.11
44 3 0.01
ACGTcount: A:0.35, C:0.17, G:0.29, T:0.19
Consensus pattern (42 bp):
TCTAGGGTCAAAGCCGACAGGCAGACTTAAGGTAAGAAAGTC
Found at i:1208527 original size:211 final size:211
Alignment explanation
Indices: 1208166--1208592 Score: 446
Period size: 211 Copynumber: 2.0 Consensus size: 211
1208156 GAGATGAGGT
* *
1208166 AGTCTCCAAGATCAAAGCCGACAAGTAGGCAGAAGGTAAGAAAGTCTCTAGGGTCAAAGCTGACA
1 AGTCTCCAAGATCAAAGCCGACAAGCAGACAGAAGGTAAGAAAGTCTCTAGGGTCAAAGCTGACA
* * * ** * *
1208231 GGCAGACTTGAGATGAGGTAGTCTCTAGGGTCAAAGCCGAACGACAAACTTGAGATAAGGCAATC
66 GGAAGACTTAAGATAAGAAAGTCTCTAGGATCAAAGCCGAACGACAAACTTGAAATAAGGCAATC
** * * * * ** *
1208296 TCTGGGGTCAAAGTCGACAGGCAGGCTAAATGTAAGAAAGTCT-CTAGGGTCATGGCCGACAGGC
131 TCTGGGGTCAAAACCGACAGGAAGACTAAAGGCAAGAAAGTCTAC-AGGGTCAAAGCCGACAAGC
*
1208360 AAACTTAAGGGTGAAGA
195 AAACTTAAGGGTAAAGA
* * * ** *
1208377 AGTCTCCAAGGTCAAAGCCGATAGGCAGACTTAAGGTAATAAAGTCTCTAGGGTCAAAG-TCGAC
1 AGTCTCCAAGATCAAAGCCGACAAGCAGACAGAAGGTAAGAAAGTCTCTAGGGTCAAAGCT-GAC
* * * ** * * *
1208441 TGGAAGACTTAAGGTAAGAAAGTCTCTAGGATCAAAGCTGATA-GGTAGACTTGAAATGAGGCAG
65 AGGAAGACTTAAGATAAGAAAGTCTCTAGGATCAAAGCCGA-ACGACAAACTTGAAATAAGGCAA
* * * * * *
1208505 TCTTTTGGGTTAAAACCGACAGGAAGATTGAAGGCGAGAAAGTCTACAGGGTCAAAGCCGACAAG
129 TCTCTGGGGTCAAAACCGACAGGAAGACTAAAGGCAAGAAAGTCTACAGGGTCAAAGCCGACAAG
*
1208570 CAGACTTAAGGGTAAAGA
194 CAAACTTAAGGGTAAAGA
1208588 AGTCT
1 AGTCT
1208593 GAAAGCTTAT
Statistics
Matches: 173, Mismatches: 40, Indels: 6
0.79 0.18 0.03
Matches are distributed among these distances:
210 1 0.01
211 170 0.98
212 2 0.01
ACGTcount: A:0.35, C:0.17, G:0.29, T:0.19
Consensus pattern (211 bp):
AGTCTCCAAGATCAAAGCCGACAAGCAGACAGAAGGTAAGAAAGTCTCTAGGGTCAAAGCTGACA
GGAAGACTTAAGATAAGAAAGTCTCTAGGATCAAAGCCGAACGACAAACTTGAAATAAGGCAATC
TCTGGGGTCAAAACCGACAGGAAGACTAAAGGCAAGAAAGTCTACAGGGTCAAAGCCGACAAGCA
AACTTAAGGGTAAAGA
Found at i:1209371 original size:13 final size:13
Alignment explanation
Indices: 1209353--1209378 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
1209343 CAATTTTTTG
1209353 TGTATCGATACAT
1 TGTATCGATACAT
1209366 TGTATCGATACAT
1 TGTATCGATACAT
1209379 ACTTTGTGTA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.15, G:0.15, T:0.38
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:1209390 original size:32 final size:33
Alignment explanation
Indices: 1209333--1209396 Score: 103
Period size: 32 Copynumber: 2.0 Consensus size: 33
1209323 TACAAGCCAA
**
1209333 TGTATCGATACAATTTTTTGTGTATCGATACAT
1 TGTATCGATACAATACTTTGTGTATCGATACAT
1209366 TGTATCGATAC-ATACTTTGTGTATCGATACA
1 TGTATCGATACAATACTTTGTGTATCGATACA
1209397 AGTTTGGCTA
Statistics
Matches: 29, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
32 18 0.62
33 11 0.38
ACGTcount: A:0.28, C:0.14, G:0.16, T:0.42
Consensus pattern (33 bp):
TGTATCGATACAATACTTTGTGTATCGATACAT
Found at i:1209839 original size:42 final size:42
Alignment explanation
Indices: 1209772--1214421 Score: 1560
Period size: 42 Copynumber: 110.3 Consensus size: 42
1209762 AGATCCTAAC
* **
1209772 AAAGTCTCTAGGGTTAAAGATGATAGGCAGA-TTAAAGGTAAG
1 AAAGTCTCTAGGGTCAAAGCCGATAGGCAGACTT-AAGGTAAG
* * *
1209814 AAAGTCTCTAGGGTCAAAACCGATAGGCAGAGTTAAGATAAG
1 AAAGTCTCTAGGGTCAAAGCCGATAGGCAGACTTAAGGTAAG
** * * * * *
1209856 GCATTCTCTAGGGTCAAAGCCAACAAGCAGACTGAAGGTAAG
1 AAAGTCTCTAGGGTCAAAGCCGATAGGCAGACTTAAGGTAAG
* * *
1209898 AAAGTTTAC-AAGGTCAAAGCCGATAGGCTGACTTAAGGGTGAAG
1 AAAGTCT-CTAGGGTCAAAGCCGATAGGCAGACTTAA-GGT-AAG
* * * *
1209942 AAA-TTTCTAAGGTCAAAGTCGATAGGCAGACTTATGGTAAG
1 AAAGTCTCTAGGGTCAAAGCCGATAGGCAGACTTAAGGTAAG
* * * * * * * *
1209983 AAAGTCTTTA-GGTCAAAGTCGACAAGCAAACTTGAGATGAG
1 AAAGTCTCTAGGGTCAAAGCCGATAGGCAGACTTAAGGTAAG
** * *
1210024 GCAG-CTCTAGGGTCAAAGCCAAGAGGCAGACTTAAGGGTGAAG
1 AAAGTCTCTAGGGTCAAAGCCGATAGGCAGACTTAA-GGT-AAG
* * * *
1210067 -AAG-CTGCTGGGGTTAAAGCTGATAGGCATA-TTGAAGGTAAG
1 AAAGTCT-CTAGGGTCAAAGCCGATAGGCAGACTT-AAGGTAAG
* * * *
1210108 AAAGTCTTTAGGGTCAAAGCCGAAAGGCAAACTTAAGATGAAG
1 AAAGTCTCTAGGGTCAAAGCCGATAGGCAGACTTAAGGT-AAG
* * * * * ** **
1210151 -GAGTGTCTAAGGTCAAAGCTGACAGATAGACAAAAGGTAAG
1 AAAGTCTCTAGGGTCAAAGCCGATAGGCAGACTTAAGGTAAG
* *
1210192 AAAGTCTCTAGGGTCAAAGTCGACAGGCAGACTTAAGGGTGAAG
1 AAAGTCTCTAGGGTCAAAGCCGATAGGCAGACTTAA-GGT-AAG
* * * * * *
1210236 -AAGTTTCCAAGGTCAAAGTCGACAGGCAGACTTAAGGTAAT
1 AAAGTCTCTAGGGTCAAAGCCGATAGGCAGACTTAAGGTAAG
* * * *
1210277 AAAATCTGC-AGGGCCAAAGCCGACT-GGTAGATTTAAGGTAAG
1 AAAGTCT-CTAGGGTCAAAGCCGA-TAGGCAGACTTAAGGTAAG
* * * * *
1210319 AAAGTCTCGAGGGTCAAAGCTGACT-GGTAGACTTAAGATGAG
1 AAAGTCTCTAGGGTCAAAGCCGA-TAGGCAGACTTAAGGTAAG
** * * ** *
1210361 GCAGTCTTTAAGGTCAAAGATGATAGGCAGA-TGGAAGGTAAG
1 AAAGTCTCTAGGGTCAAAGCCGATAGGCAGACT-TAAGGTAAG
* ** * * *
1210403 AAAGTCTAC-AGGGTCAAAGTCGGCAAGTAGACTTAGGTGTGAA-
1 AAAGTCT-CTAGGGTCAAAGCCGATAGGCAGACTTAAG-GT-AAG
* * * * *
1210446 AGAGTCTCTAGGGTTAAAGCTGATAGGCAGACTGAATGTAA-
1 AAAGTCTCTAGGGTCAAAGCCGATAGGCAGACTTAAGGTAAG
* * * * * * *
1210487 AAAGGTCTCTAGAGTCAAAACTGATAGGCAAACTTGAGATGAG
1 AAA-GTCTCTAGGGTCAAAGCCGATAGGCAGACTTAAGGTAAG
** * * * * *
1210530 GCAGTCCCTAGGGTCAAAGCTGATAAGCAGACTAAAGGTTAG
1 AAAGTCTCTAGGGTCAAAGCCGATAGGCAGACTTAAGGTAAG
* * * *
1210572 AAAGTTTAC-AAGGTCAAAGCCGACAGGCAGACATAAGGGTGAAG
1 AAAGTCT-CTAGGGTCAAAGCCGATAGGCAGACTTAA-GGT-AAG
* * * * * *
1210616 AAA-TTTCTAGAGTCAAAGTCGACAGGTAGACTTATGGTAAG
1 AAAGTCTCTAGGGTCAAAGCCGATAGGCAGACTTAAGGTAAG
* * * * *
1210657 AAAGTCTCTAGGGTCAAAGCCGATAAGCAAACTTGAGATGAG
1 AAAGTCTCTAGGGTCAAAGCCGATAGGCAGACTTAAGGTAAG
** * * * * * *
1210699 GTAGTCTCTAAGGTCAAAGCCGACAGGCAAACTGAGGGTAAA
1 AAAGTCTCTAGGGTCAAAGCCGATAGGCAGACTTAAGGTAAG
* * * * * * *
1210741 AAAGTCTTTAGGGTCAAAGTCGACAAGCAGACTTGAGATGAG
1 AAAGTCTCTAGGGTCAAAGCCGATAGGCAGACTTAAGGTAAG
** * * *
1210783 GCAGTCTCTAGGGTTAAAGCCCG-CAGGCAGA-TTAAAGGTAAA
1 AAAGTCTCTAGGGTCAAAG-CCGATAGGCAGACTT-AAGGTAAG
* * * *
1210825 AAAGTCTCCAAGGTCAAAGCTGACAGGCAGACTTAAGGGTGAAG
1 AAAGTCTCTAGGGTCAAAGCCGATAGGCAGACTTAA-GGT-AAG
* * * * *
1210869 -AAGTCTCCAAGGTCAAAGTCGATAGGCAGACTAAAGGTAAA
1 AAAGTCTCTAGGGTCAAAGCCGATAGGCAGACTTAAGGTAAG
* * * * ** * *
1210910 AAAGT-TGCTAAGGTCAAAGCCGACATGTAGACTTGTGATGAG
1 AAAGTCT-CTAGGGTCAAAGCCGATAGGCAGACTTAAGGTAAG
** ** * *
1210952 GCAGTCTCTAACGTCAAAGCTACGAT---TAGACTGAAGGTAAG
1 AAAGTCTCTAGGGTCAAAGC--CGATAGGCAGACTTAAGGTAAG
* * * *
1210993 AAAGTCTATAGGGTTAAAGCTGATAGGCAGACGTAAGGGTAAG
1 AAAGTCTCTAGGGTCAAAGCCGATAGGCAGACTTAA-GGTAAG
* * * * * *
1211036 GAAGTCTCTAGGGTTAAAACCGATAGGCAGAATGAAGCTAAG
1 AAAGTCTCTAGGGTCAAAGCCGATAGGCAGACTTAAGGTAAG
* * * * * *
1211078 AAAGTCTCCAGGGTCAAAACCGATAGGTAGAATTAA-ATGAG
1 AAAGTCTCTAGGGTCAAAGCCGATAGGCAGACTTAAGGTAAG
** * * ** * * * *
1211119 GCAGTCT-TCAAGGTCAAAGCTGACCGGTAAACTTGAGATGAAG
1 AAAGTCTCT-AGGGTCAAAGCCGATAGGCAGACTTAAGGT-AAG
* * * * * * * * * *
1211162 -CAGTCTCTAAGTTAAAACCCAACAGGTTA-ACTGAAGGTAAA
1 AAAGTCTCTAGGGTCAAAGCCGATAGG-CAGACTTAAGGTAAG
* * * * * * *
1211203 AAAGTCTCTAAGGTCAAAGTCGATTGGGAGACTTGAGATGAG
1 AAAGTCTCTAGGGTCAAAGCCGATAGGCAGACTTAAGGTAAG
** * * * * *
1211245 GCAGTCTCTAAGGTCAAAGCTGATAGGCAGACTTGAGATGAG
1 AAAGTCTCTAGGGTCAAAGCCGATAGGCAGACTTAAGGTAAG
** * * *
1211287 GCAGTCTCTAGGGTCAAAGCTGA-ATGGCAGACTTGAGATAAG
1 AAAGTCTCTAGGGTCAAAGCCGATA-GGCAGACTTAAGGTAAG
** * * * *
1211329 GTAGTTTCTAGGATCAAAGCCGATGGGCAAACTTAAGGGTGAAG
1 AAAGTCTCTAGGGTCAAAGCCGATAGGCAGACTTAA-GGT-AAG
* * * * *
1211373 -AAGTCTCAAAGGTCAATGCTGACAGGCAGACTTAAGGTAAG
1 AAAGTCTCTAGGGTCAAAGCCGATAGGCAGACTTAAGGTAAG
* * ** * * *
1211414 AAAGTCTCTAGGGTCAAAGCTGACAGTTAGACTTGAGATGAG
1 AAAGTCTCTAGGGTCAAAGCCGATAGGCAGACTTAAGGTAAG
** * * * *
1211456 GCAGTCTCTAAGGTCAAAGCCGACAAGCAGA-TTAAAGGTAAA
1 AAAGTCTCTAGGGTCAAAGCCGATAGGCAGACTT-AAGGTAAG
* * * *
1211498 AAAGTCTCCAGGGTCAAAGCCAACAAGCAGACTTAAGGGTGAAG
1 AAAGTCTCTAGGGTCAAAGCCGATAGGCAGACTTAA-GGT-AAG
* * * * * *
1211542 -AAGTCTCCAAGGTCAAAGCCGACAAGCAGACTTATGGTAAA
1 AAAGTCTCTAGGGTCAAAGCCGATAGGCAGACTTAAGGTAAG
* * * ** * * *
1211583 AAAGT-TCTCAGGGTTAAAGCTGACAGGTGGACTTGAGATGAG
1 AAAGTCTCT-AGGGTCAAAGCCGATAGGCAGACTTAAGGTAAG
** * * * * **
1211625 GTAGTCTCTATGGTTAAAG-CTACAGTTAGA-TTGAAGGTAAG
1 AAAGTCTCTAGGGTCAAAGCCGATAGGCAGACTT-AAGGTAAG
* * * *
1211666 AAAATTTAC-AGGGTCAAAGCCGATA-GCTAGACGTAAAGTTGAAG
1 AAAGTCT-CTAGGGTCAAAGCCGATAGGC-AGAC-TTAAGGT-AAG
* * * *** *
1211710 -AAGTCTCTACGGTTAAAGCCGATGGGCAGAAAGAAGGTAAA
1 AAAGTCTCTAGGGTCAAAGCCGATAGGCAGACTTAAGGTAAG
* * * * * * * * *
1211751 AAAGTCTCCAAGGTCAAAACCGATAGGTAAAATTGAGATGAG
1 AAAGTCTCTAGGGTCAAAGCCGATAGGCAGACTTAAGGTAAG
** * * * * * *
1211793 GCAGTCT-TCAAGGTCAAAGCTGACAGGCAGACTTGAGATGAG
1 AAAGTCTCT-AGGGTCAAAGCCGATAGGCAGACTTAAGGTAAG
** * *
1211835 GCAGTCTCTAGGGTCAAA-CCTGACAGGC-GAACTGAAGGTAAG
1 AAAGTCTCTAGGGTCAAAGCC-GATAGGCAG-ACTTAAGGTAAG
* * * * * * *
1211877 AAAGTCTCTAAGGTCAAAGTCGACAGGCAGATTTGAGATGAG
1 AAAGTCTCTAGGGTCAAAGCCGATAGGCAGACTTAAGGTAAG
*** * * * * * *
1211919 GCTGTCTCTAAGGTTAAAGCCAATAGGCAGACTGAAGTTAAA
1 AAAGTCTCTAGGGTCAAAGCCGATAGGCAGACTTAAGGTAAG
* * ** *
1211961 AAAGTCTCCAAGGTCAAAGCCGA-CCGTAGACTTAAGAGTGAAG
1 AAAGTCTCTAGGGTCAAAGCCGATAGGCAGACTTAAG-GT-AAG
* * * * * *
1212004 -AAGTTTTTAGGGTTAAAGCCGATAGGCAGGCTTGAGATGAAG
1 AAAGTCTCTAGGGTCAAAGCCGATAGGCAGACTTAAGGT-AAG
* * * * * *
1212046 -CAGTCTC-CGGAATCAAAGCCGATAGGCAAACCT-AGGATGAG
1 AAAGTCTCTAGG-GTCAAAGCCGATAGGCAGACTTAAGG-TAAG
** * * * * * *
1212087 GTAGTCTCTAAGGTCAAAGCGGATAGCCAAACTTGA-G-ATG
1 AAAGTCTCTAGGGTCAAAGCCGATAGGCAGACTTAAGGTAAG
** * * * *
1212127 -TGGTCATCTACAAGGTTAAAGCCGATAAGCAGACTGAAGGTAAG
1 AAAGTC-TCT--AGGGTCAAAGCCGATAGGCAGACTTAAGGTAAG
* * * * *
1212171 AAAGTCTCCAAGGTCAAAACCGACAGGTAGACTTAAGGTTGAAG
1 AAAGTCTCTAGGGTCAAAGCCGATAGGCAGACTTAAGG-T-AAG
** *
1212215 AAATGTC-C-AGGGTCAAAGTTGATAGGCAGACTTATGGTAAG
1 AAA-GTCTCTAGGGTCAAAGCCGATAGGCAGACTTAAGGTAAG
* * * * * * *
1212256 AAAGTCTCAAGGGTCAAAGCTGGTAGCCAAACTTGAGGTGAG
1 AAAGTCTCTAGGGTCAAAGCCGATAGGCAGACTTAAGGTAAG
** * * * * * *
1212298 GCAGT-TTTCAAGGTTAAAGCCGACAGGCAGACTGAAGGTAAT
1 AAAGTCTCT-AGGGTCAAAGCCGATAGGCAGACTTAAGGTAAG
* * * * * *
1212340 AAAGTCTTTAGGGCCAAAGTCGACAGGCAGACTTAAGATGAGG
1 AAAGTCTCTAGGGTCAAAGCCGATAGGCAGACTTAAGGT-AAG
* * * * * *
1212383 CAA-TCTCTAGTGTCAAAGCTGAAAGGGAGACTTGAA-ATAAG
1 AAAGTCTCTAGGGTCAAAGCCGATAGGCAGACTT-AAGGTAAG
** * * ** * *
1212424 GCAGTCTTTAGTGTCAAAGCTAATAGGTAGACTAAAGGTAAG
1 AAAGTCTCTAGGGTCAAAGCCGATAGGCAGACTTAAGGTAAG
*
1212466 AAAAG-CTCTAGGGTCAAAGCCGACAGGCAGACTTAAGGGTGAAG
1 -AAAGTCTCTAGGGTCAAAGCCGATAGGCAGACTTAA-GGT-AAG
* * * * *
1212510 -AAGTCTCCAAGGTCAAAGCTGATAGGCAGACATAGGGTAAG
1 AAAGTCTCTAGGGTCAAAGCCGATAGGCAGACTTAAGGTAAG
* * * *
1212551 AATGTCTCTACGGTCAAAGCCGACAGGTAGACTTAAGGTAA-
1 AAAGTCTCTAGGGTCAAAGCCGATAGGCAGACTTAAGGTAAG
* * *
1212592 AAAGGTCT-TCAGGGTCAAAGCCGACAGGTAGACATAAGGGTGAAG
1 AAA-GTCTCT-AGGGTCAAAGCCGATAGGCAGACTTAA-GGT-AAG
* * * * * * *
1212637 -AAGTCTCCT-GGGTCAAAGCTGACAAGCACACTTGAGATGAG
1 AAAGTCT-CTAGGGTCAAAGCCGATAGGCAGACTTAAGGTAAG
** * * * * * * * *
1212678 TTAGTCTCCAAGGTAAAAGCCGACAAGCATACTGAAGGTAAA
1 AAAGTCTCTAGGGTCAAAGCCGATAGGCAGACTTAAGGTAAG
** **
1212720 AAAGTCT-TCACAGTCAAAGCCGACGGGCAGACTTAAGGGTAA-
1 AAAGTCTCT-AGGGTCAAAGCCGATAGGCAGACTTAA-GGTAAG
* * * * * * * * *
1212762 AGAAGTCTCCAGGGTCAAAACTGACAGGTAAACTTGAGATGAG
1 A-AAGTCTCTAGGGTCAAAGCCGATAGGCAGACTTAAGGTAAG
** * * *** * ** *
1212805 GCAGTCTATATGGTCAAAATTGACAAACAGACTGAAGGTAAG
1 AAAGTCTCTAGGGTCAAAGCCGATAGGCAGACTTAAGGTAAG
* * * *
1212847 AAAGTGTATAGGGTCAAAGCCGACAAGCAGACTTAATGGTGAAG
1 AAAGTCTCTAGGGTCAAAGCCGATAGGCAGACTTAA-GGT-AAG
* * * * *
1212891 -AAGTCTTTAGAGTCAAAGCC-AGCAGGCAGACTTGAGATGAAG
1 AAAGTCTCTAGGGTCAAAGCCGA-TAGGCAGACTTAAGGT-AAG
* * * * * * * * *
1212933 -CAGTCTCCAAGGTCAAGGCCAACAAGCAGAC-TAGAGATGAG
1 AAAGTCTCTAGGGTCAAAGCCGATAGGCAGACTTA-AGGTAAG
** * * * *
1212974 GTAGTCTCCAAGGTCAAAGCCGATAGGCAAACTGAAGGTAAG
1 AAAGTCTCTAGGGTCAAAGCCGATAGGCAGACTTAAGGTAAG
* * * *
1213016 AAAGTCTTTAGGGTTAAAGCCGATAGGCAAAATTAAGGGTGAAG
1 AAAGTCTCTAGGGTCAAAGCCGATAGGCAGACTTAA-GGT-AAG
* * * * * * *
1213060 -AAGTATC-CGAGGTTAAAGTCGACAGACAGTCTTAAGGTAAG
1 AAAGTCTCTAG-GGTCAAAGCCGATAGGCAGACTTAAGGTAAG
* * * * * * * ** * *
1213101 AATA-TCTCCAAGGTTAATGCCGACAGGTAAACTTAAATTTAT
1 AA-AGTCTCTAGGGTCAAAGCCGATAGGCAGACTTAAGGTAAG
* * ** * * *
1213143 AAAGTCTCCAAGGTCAAAGTTGAGAAGCAGACTTAAGGGT-GG
1 AAAGTCTCTAGGGTCAAAGCCGATAGGCAGACTTAA-GGTAAG
* * *
1213185 AGAAGTCTCCTA-GGTCAAAGCCGACAGGCAGACTTAAGATGAG
1 A-AAGTCT-CTAGGGTCAAAGCCGATAGGCAGACTTAAGGTAAG
** * ** * * *
1213228 GGAGTCTCTAGGGTCAAAGCTGACCGGTAGACTGAAGGTATG
1 AAAGTCTCTAGGGTCAAAGCCGATAGGCAGACTTAAGGTAAG
* * * * * * * *
1213270 AAAGTCTCTCGTGTCACATCCGACAAGCA-AATTATGGGTAAG
1 AAAGTCTCTAGGGTCAAAGCCGATAGGCAGACTTA-AGGTAAG
* * ** * *
1213312 CAACTCTCCGGGGTCAAAGCCGATAGGCAAACTGAAGGTAAG
1 AAAGTCTCTAGGGTCAAAGCCGATAGGCAGACTTAAGGTAAG
* * * * * * * *
1213354 AAAGTCCCCAAGGTTAAAGCTGACAAGCAGACTAAAGGTAAG
1 AAAGTCTCTAGGGTCAAAGCCGATAGGCAGACTTAAGGTAAG
* * * * * * * *
1213396 AAAGTTTCCAAGGTCAAAACCAATAGGCAGACTTGAGATGAG
1 AAAGTCTCTAGGGTCAAAGCCGATAGGCAGACTTAAGGTAAG
** * * *
1213438 GCAGTCTCTAGGGTCAAAGCCGACAGGCAGACTTAAGATGAG
1 AAAGTCTCTAGGGTCAAAGCCGATAGGCAGACTTAAGGTAAG
*** * * ** ** * * *
1213480 GCTGTTTCAAGGGTCAAATTCGCCAAGCA-AATTGACGGTAAG
1 AAAGTCTCTAGGGTCAAAGCCGATAGGCAGACTT-AAGGTAAG
* * * * *
1213522 AAAGCCT-TCAGGGTCAAAGACGACAGGCAAACATAAGGGTGAA-
1 AAAGTCTCT-AGGGTCAAAGCCGATAGGCAGACTTAA-GGT-AAG
* ** * * * * * *
1213565 CAAGTCTCCT--GGTCAAAGTTGACAAGCAAACTTGAGATGAG
1 AAAGTCT-CTAGGGTCAAAGCCGATAGGCAGACTTAAGGTAAG
** * * * * * * *
1213606 TTAGTCTCCAAGGTAAAAGCCCACAGGCAGACTGAAAGTAAG
1 AAAGTCTCTAGGGTCAAAGCCGATAGGCAGACTTAAGGTAAG
* * *
1213648 AAAGTCTCCAGGGTCAAAGTCGAGAGGCAGACTTAAGGGTAA-
1 AAAGTCTCTAGGGTCAAAGCCGATAGGCAGACTTAA-GGTAAG
* * * *
1213690 AGAAGTCTCTAGGGTTAAAGACGACAGGTAGACTTAAGGGTGAAG
1 A-AAGTCTCTAGGGTCAAAGCCGATAGGCAGACTTAA-GGT-AAG
* * * * * *
1213735 -AAGTCTGC-AGGGTCAAAGCTGACAGACAGACTTGAGATGAG
1 AAAGTCT-CTAGGGTCAAAGCCGATAGGCAGACTTAAGGTAAG
** * * * * *
1213776 GGAGTCTCCAGGGTTAAAGCCGATAGGCAGACTTGAGATGAGG
1 AAAGTCTCTAGGGTCAAAGCCGATAGGCAGACTTAAGGT-AAG
* * * * * ** *
1213819 CAA-TCTCCAGGGTTAGAGTCGACCGGCAGACTGAAGGTAAG
1 AAAGTCTCTAGGGTCAAAGCCGATAGGCAGACTTAAGGTAAG
* * * * *
1213860 AAAATCTCTAGTGTCACAGCCGACAGGCAGACTTAGGGGTAA-
1 AAAGTCTCTAGGGTCAAAGCCGATAGGCAGACTTA-AGGTAAG
* * * * *
1213902 ACAAGTCTCCAAGGTCAAAGGCGACAGGCAGACTGAAGGTAAG
1 A-AAGTCTCTAGGGTCAAAGCCGATAGGCAGACTTAAGGTAAG
* * * *
1213945 AAAGTCTCTAAGGTCAAAGCCGGCATA--AAGACTAAAGGTAAA
1 AAAGTCTCTAGGGTCAAAGCC-G-ATAGGCAGACTTAAGGTAAG
* * * * *
1213987 AAAGTCTCTAGGGTCAAAACTGATAAGCAGACTTAAGATGAG
1 AAAGTCTCTAGGGTCAAAGCCGATAGGCAGACTTAAGGTAAG
** * * * * * * *
1214029 GCAGTCTCTAGGGTTAAAGCTGACAGGAAGACTTGAGATGAG
1 AAAGTCTCTAGGGTCAAAGCCGATAGGCAGACTTAAGGTAAG
*** ** * * * * *
1214071 GCTGTCTCTAGGGTCAAAGCTAACAAGCAAAATGAAGGTAAG
1 AAAGTCTCTAGGGTCAAAGCCGATAGGCAGACTTAAGGTAAG
* ** * *
1214113 AAAGTCTCTAGGGTTAAAGATGACAAGCAGACTTAAGGGTGAAG
1 AAAGTCTCTAGGGTCAAAGCCGATAGGCAGACTTAA-GGT-AAG
* ** *
1214157 -AAGTCTCTAGGGTCAAAGCCGACAGATAGACTTAAGATAAG
1 AAAGTCTCTAGGGTCAAAGCCGATAGGCAGACTTAAGGTAAG
** * ** * * * * *
1214198 GCAGTCTCCAGGGTCAAAGTTGACAAGCAAAC-TAGAGATGAG
1 AAAGTCTCTAGGGTCAAAGCCGATAGGCAGACTTA-AGGTAAG
** * * * * * * *
1214240 GTAGTCTCTAAGATCAAAGCCGATAAGTAG-GTAGAAGGCAAG
1 AAAGTCTCTAGGGTCAAAGCCGATAGGCAGACT-TAAGGTAAG
* * ** * * * *
1214282 AAAGTCTCCAAGGTCAAAGCTAACAGGCAGACTTGAGATGATG
1 AAAGTCTCTAGGGTCAAAGCCGATAGGCAGACTTAAGGT-AAG
* * * * *
1214325 -TAGTCTCTAGGGTCAAAGCTGAAAGGCAGACTTGAGATAAG
1 AAAGTCTCTAGGGTCAAAGCCGATAGGCAGACTTAAGGTAAG
** * * * *
1214366 GCAGTCTCTAGGGTCAAAGCCGACAGGCAGAATAAATGTAAG
1 AAAGTCTCTAGGGTCAAAGCCGATAGGCAGACTTAAGGTAAG
1214408 AAAGTCTCTAGGGT
1 AAAGTCTCTAGGGT
1214422 TTGTAGACAC
Statistics
Matches: 3410, Mismatches: 1012, Indels: 372
0.71 0.21 0.08
Matches are distributed among these distances:
39 7 0.00
40 18 0.01
41 245 0.07
42 2366 0.69
43 698 0.20
44 68 0.02
45 8 0.00
ACGTcount: A:0.36, C:0.16, G:0.28, T:0.20
Consensus pattern (42 bp):
AAAGTCTCTAGGGTCAAAGCCGATAGGCAGACTTAAGGTAAG
Found at i:1210059 original size:125 final size:127
Alignment explanation
Indices: 1209796--1214216 Score: 445
Period size: 127 Copynumber: 35.0 Consensus size: 127
1209786 TAAAGATGAT
* * ** * * **
1209796 AGGCAGA-TTAAAGGT-AAGAAAGTCTCTAGGGTCAAAACCGATAGGCAGAGTTAAGATAAGGCA
1 AGGCAGACTTAAGGGTGAAGAAA-TTTCTAGGGTCAAAGTCGATAGGCAGACTTAAGGTAAGAAA
* * * * * * * *
1209859 TTCTCTAGGGTCAAAGCC-AACAAGCAGACTGAAGGT-AAGAAAGTTTAC-AAGGTCAAAGCCGA
65 GTCTTTAGGGTCAAAGCCGAA-AGGCAAACTTAAGATGAAG-GAGTCT-CTAAGGTCAAAGCCGA
*
1209921 T
127 C
* * *
1209922 AGGCTGACTTAAGGGTGAAGAAATTTCTAAGGTCAAAGTCGATAGGCAGACTTATGGTAAGAAAG
1 AGGCAGACTTAAGGGTGAAGAAATTTCTAGGGTCAAAGTCGATAGGCAGACTTAAGGTAAGAAAG
* * * * *
1209987 TCTTTA-GGTCAAAGTCGACAA-GCAAACTTGAGATG-AGGCAG-CTCTAGGGTCAAAGCCAAG
66 TCTTTAGGGTCAAAGCCGA-AAGGCAAACTTAAGATGAAGG-AGTCTCTAAGGTCAAAGCCGAC
** * * * *
1210047 AGGCAGACTTAAGGGTGAAGAAGCTGCTGGGGTTAAAG-CTGATAGGCATA-TTGAAGGTAAGAA
1 AGGCAGACTTAAGGGTGAAGAAATTTCTAGGGTCAAAGTC-GATAGGCAGACTT-AAGGTAAGAA
* *
1210110 AGTCTTTAGGGTCAAAGCCGAAAGGCAAACTTAAGATGAAGGAGTGTCTAAGGTCAAAGCTGAC
64 AGTCTTTAGGGTCAAAGCCGAAAGGCAAACTTAAGATGAAGGAGTCTCTAAGGTCAAAGCCGAC
** * * * *
1210174 AGATAGAC-AAAAGGT-AAGAAAGTCTCTAGGGTCAAAGTCGACAGGCAGACTTAAGGGTGAAG-
1 AGGCAGACTTAAGGGTGAAGAAA-TTTCTAGGGTCAAAGTCGATAGGCAGACTTAA-GGT-AAGA
* * * * * * ** * * *
1210236 AAGT-TTCCAAGGTCAAAGTCGACAGGCAGACTTAAGGT-AATAAAATCTGC-AGGGCCAAAGCC
63 AAGTCTT-TAGGGTCAAAGCCGAAAGGCAAACTTAAGATGAA-GGAGTCT-CTAAGGTCAAAGCC
1210298 GAC
125 GAC
* * * * * * * * *
1210301 TGGTAGATTTAA-GGT-AAGAAAGTCTCGAGGGTCAAAG-CTGACT-GGTAGACTTAAGATGAGG
1 AGGCAGACTTAAGGGTGAAGAAA-TTTCTAGGGTCAAAGTC-GA-TAGGCAGACTTAAGGTAAGA
* * ** * * * * * * *
1210362 CAGTCTTTAAGGTCAAAGATGATAGGCAGA-TGGAAGGT-AAGAAAGTCTAC-AGGGTCAAAGTC
63 AAGTCTTTAGGGTCAAAGCCGAAAGGCAAACT-TAAGATGAAG-GAGTCT-CTAAGGTCAAAGCC
*
1210424 GGC
125 GAC
* * * * * * *
1210427 AAGTAGACTT-AGGTGTGAA-AGAGTCTCTAGGGTTAAAG-CTGATAGGCAGACTGAATGTAA-A
1 AGGCAGACTTAAGG-GTGAAGA-AATTTCTAGGGTCAAAGTC-GATAGGCAGACTTAAGGTAAGA
* * * * * * * * *
1210488 AAGGTCTCTAGAGTCAAAACTGATAGGCAAACTTGAGATG-AGGCAGTCCCTAGGGTCAAAGCTG
63 AA-GTCTTTAGGGTCAAAGCCGAAAGGCAAACTTAAGATGAAGG-AGTCTCTAAGGTCAAAGCCG
*
1210552 AT
126 AC
* * * * * * *
1210554 AAGCAGAC-TAAAGGT-TAGAAAGTTTAC-AAGGTCAAAGCCGACAGGCAGACATAAGGGTGAAG
1 AGGCAGACTTAAGGGTGAAGAAA-TTT-CTAGGGTCAAAGTCGATAGGCAGACTTAA-GGT-AAG
* * * * * * * * *
1210616 AAA-T-TTCTAGAGTCAAAGTCGACAGGTAGACTTATGGT-AAGAAAGTCTCTAGGGTCAAAGCC
62 AAAGTCTT-TAGGGTCAAAGCCGAAAGGCAAACTTAAGATGAAG-GAGTCTCTAAGGTCAAAGCC
*
1210678 GAT
125 GAC
* * * * * * * * * * * * * * *
1210681 AAGCAAACTTGA-GATGAGGTAGTCTCTAAGGTCAAAGCCGACAGGCAAACTGAGGGTAAAAAAG
1 AGGCAGACTTAAGGGTGAAGAAATTTCTAGGGTCAAAGTCGATAGGCAGACTTAAGGTAAGAAAG
* * * * *
1210745 TCTTTAGGGTCAAAGTCGACAA-GCAGACTTGAGATG-AGGCAGTCTCTAGGGTTAAAGCCCG-C
66 TCTTTAGGGTCAAAGCCGA-AAGGCAAACTTAAGATGAAGG-AGTCTCTAAGGTCAAAG-CCGAC
* * * * * *
1210807 AGGCAGA-TTAAAGGT-AAAAAAGTCTCCAAGGTCAAAG-CTGACAGGCAGACTTAAGGGTGAAG
1 AGGCAGACTTAAGGGTGAAGAAA-TTTCTAGGGTCAAAGTC-GATAGGCAGACTTAA-GGT-AAG
** * * * * * * * **
1210869 -AAGTCTCCAAGGTCAAAGTCGATAGGCAGACTAAAGGTAAAAAAGT-TGCTAAGGTCAAAGCCG
62 AAAGTCTTTAGGGTCAAAGCCGAAAGGCAAACTTAAGATGAAGGAGTCT-CTAAGGTCAAAGCCG
1210932 AC
126 AC
* * * * * * * ** * *
1210934 ATGTAGACTT--GTGATGAGGCAGTCTCTAACGTCAAAGCTACGAT---TAGACTGAAGGTAAGA
1 AGGCAGACTTAAG-GGTGAAGAAATTTCTAGGGTCAAAG-T-CGATAGGCAGACTTAAGGTAAGA
* * * * * * * * * *
1210994 AAGTCTATAGGGTTAAAGCTGATAGGCAGACGTAAG-GGTAAGGAAGTCTCTAGGGTTAAAACCG
63 AAGTCTTTAGGGTCAAAGCCGAAAGGCAAACTTAAGATG-AAGG-AGTCTCTAAGGTCAAAGCCG
*
1211058 AT
126 AC
* * * * * ** * * * * **
1211060 AGGCAGAATGAA-GCT-AAGAAAGTCTCCAGGGTCAAAACCGATAGGTAGAATTAA-ATGAGGCA
1 AGGCAGACTTAAGGGTGAAGAAA-TTTCTAGGGTCAAAGTCGATAGGCAGACTTAAGGTAAGAAA
* * * ** * * * * * * *
1211122 GTCTTCAAGGTCAAAGCTGACCGGTAAACTTGAGATGAAGCAGTCTCTAAGTTAAAACCCAAC
65 GTCTTTAGGGTCAAAGCCGAAAGGCAAACTTAAGATGAAGGAGTCTCTAAGGTCAAAGCCGAC
* * * * * * * * * * **
1211185 AGGTTA-ACTGAA-GGT-AAAAAAGTCTCTAAGGTCAAAGTCGATTGGGAGACTTGAGATGAGGC
1 AGG-CAGACTTAAGGGTGAAGAAA-TTTCTAGGGTCAAAGTCGATAGGCAGACTTAAGGTAAGAA
* * * * * * * *
1211247 AGTCTCTAAGGTCAAAGCTGATAGGCAGACTTGAGATG-AGGCAGTCTCTAGGGTCAAAGCTGA-
64 AGTCTTTAGGGTCAAAGCCGAAAGGCAAACTTAAGATGAAGG-AGTCTCTAAGGTCAAAGCCGAC
* * * * * * * *
1211310 ATGGCAGACTTGA-GAT-AAGGTAGTTTCTAGGATCAAAGCCGATGGGCAAACTTAAGGGTGAAG
1 A-GGCAGACTTAAGGGTGAA-GAAATTTCTAGGGTCAAAGTCGATAGGCAGACTTAA-GGT-AAG
** * * * * * * * * *
1211373 -AAGTCTCAAAGGTCAATGCTGACAGGCAGACTTAAGGT-AAGAAAGTCTCTAGGGTCAAAGCTG
62 AAAGTCTTTAGGGTCAAAGCCGAAAGGCAAACTTAAGATGAAG-GAGTCTCTAAGGTCAAAGCCG
1211436 AC
126 AC
** * * * * * * * * * * *
1211438 AGTTAGACTTGA-GATGAGGCAGTCTCTAAGGTCAAAGCCGACAAGCAGA-TTAAAGGTAAAAAA
1 AGGCAGACTTAAGGGTGAAGAAATTTCTAGGGTCAAAGTCGATAGGCAGACTT-AAGGTAAGAAA
** * * * * *
1211501 GTCTCCAGGGTCAAAGCC-AACAAGCAGACTTAAGGGTGAAGAAGTCTCCAAGGTCAAAGCCGAC
65 GTCTTTAGGGTCAAAGCCGAA-AGGCAAACTTAA-GATGAAGGAGTCTCTAAGGTCAAAGCCGAC
* * * * * * ** * * * **
1211565 AAGCAGACTT-ATGGT-AAAAAAGTTCTCAGGGTTAAAG-CTGACAGGTGGACTTGAGATGAGGT
1 AGGCAGACTTAAGGGTGAAGAAATTTCT-AGGGTCAAAGTC-GATAGGCAGACTTAAGGTAAGAA
* * * * * ** * * * *
1211627 AGTCTCTATGGTTAAAG-CTACAGTTAGA-TTGAAGGT-AAGAAAAT-T-TACAGGGTCAAAGCC
64 AGTCTTTAGGGTCAAAGCCGAAAGGCAAACTT-AAGATGAAG-GAGTCTCTA-A-GGTCAAAGCC
*
1211687 GAT
125 GAC
* * * * * * * * * *** *
1211690 A-GCTAGACGTAAAGTTGAAGAAGTCTCTACGGTTAAAGCCGATGGGCAGAAAGAAGGTAAAAAA
1 AGGC-AGACTTAAGGGTGAAGAAATTTCTAGGGTCAAAGTCGATAGGCAGACTTAAGGTAAGAAA
** * * * * * * *
1211754 GTCTCCAAGGTCAAAACCGATAGGTAAAATTGAGATG-AGGCAGTCT-TCAAGGTCAAAGCTGAC
65 GTCTTTAGGGTCAAAGCCGAAAGGCAAACTTAAGATGAAGG-AGTCTCT-AAGGTCAAAGCCGAC
* * * * * * * * *
1211817 AGGCAGACTTGA-GATGAGGCAGTCTCTAGGGTCAAA-CCTGACAGGC-GAACTGAAGGTAAGAA
1 AGGCAGACTTAAGGGTGAAGAAATTTCTAGGGTCAAAGTC-GATAGGCAG-ACTTAAGGTAAGAA
* * * * * * * * * * *
1211879 AGTCTCTAAGGTCAAAGTCGACAGGCAGATTTGAGATG-AGGCTGTCTCTAAGGTTAAAGCCAAT
64 AGTCTTTAGGGTCAAAGCCGAAAGGCAAACTTAAGATGAAGG-AGTCTCTAAGGTCAAAGCCGAC
* * * * * * * ** *
1211943 AGGCAGACTGAA--GTTAAAAAAGTCTCCAAGGTCAAAGCCGA-CCGTAGACTTAAGAGTGAAG-
1 AGGCAGACTTAAGGGTGAAGAAA-TTTCTAGGGTCAAAGTCGATAGGCAGACTTAAG-GT-AAGA
* * * ** * * *
1212004 AAGTTTTTAGGGTTAAAGCCGATAGGCAGGCTTGAGATGAAGCAGTCTC--CGGAATCAAAGCCG
63 AAGTCTTTAGGGTCAAAGCCGAAAGGCAAACTTAAGATGAAGGAGTCTCTAAGG--TCAAAGCCG
*
1212067 AT
126 AC
* * * * * * * * * * * * *
1212069 AGGCAAACCT-AGGATGAGGTAGTCTCTAAGGTCAAAG-CGGATAGCCAAACTTGAGATGT-GGT
1 AGGCAGACTTAAGGGTGAAGAAATTTCTAGGGTCAAAGTC-GATAGGCAGACTT-A-AGGTAAGA
* ** * * * * * * * *
1212131 CA-TCTACAAGGTTAAAGCCGATAA-GCAGACTGAAGGT-AAGAAAGTCTCCAAGGTCAAAACCG
63 AAGTCTTTAGGGTCAAAGCCGA-AAGGCAAACTTAAGATGAAG-GAGTCTCTAAGGTCAAAGCCG
1212193 AC
126 AC
* * * * * *
1212195 AGGTAGACTTAAGGTTGAAGAAATGTCCAGGGTCAAAGTTGATAGGCAGACTTATGGTAAGAAAG
1 AGGCAGACTTAAGGGTGAAGAAATTTCTAGGGTCAAAGTCGATAGGCAGACTTAAGGTAAGAAAG
** * ** * * * * *
1212260 TCTCAAGGGTCAAAGCTGGTAGCCAAACTTGAGGTG-AGGCAGT-TTTCAAGGTTAAAGCCGAC
66 TCTTTAGGGTCAAAGCCGAAAGGCAAACTTAAGATGAAGG-AGTCTCT-AAGGTCAAAGCCGAC
* * * * * * *
1212322 AGGCAGACTGAA-GGT-AATAAAGTCTT-TAGGGCCAAAGTCGACAGGCAGACTTAAGATGAGGC
1 AGGCAGACTTAAGGGTGAAGAAA-T-TTCTAGGGTCAAAGTCGATAGGCAGACTTAAGGT-AAGA
* * * * * * *
1212384 AA-TCTCTAGTGTCAAAGCTGAAAGGGAGACTTGAA-AT-AAGGCAGTCT-TTAGTGTCAAAGCT
63 AAGTCTTTAGGGTCAAAGCCGAAAGGCAAACTT-AAGATGAAGG-AGTCTCTAAG-GTCAAAGCC
* *
1212445 AAT
125 GAC
* * ** * *
1212448 AGGTAGAC-TAAAGGT-AAGAAAAGCTCTAGGGTCAAAGCCGACAGGCAGACTTAAGGGTGAAG-
1 AGGCAGACTTAAGGGTGAAG-AAATTTCTAGGGTCAAAGTCGATAGGCAGACTTAA-GGT-AAGA
** * * * * * * * * *
1212510 AAGTCTCCAAGGTCAAAGCTGATAGGCAGACATAGGGT-AAGAATGTCTCTACGGTCAAAGCCGA
63 AAGTCTTTAGGGTCAAAGCCGAAAGGCAAACTTAAGATGAAGGA-GTCTCTAAGGTCAAAGCCGA
1212574 C
127 C
* * * * *
1212575 AGGTAGACTTAA-GGT-AA-AAAGGTCTTC-AGGGTCAAAGCCGACAGGTAGACATAAGGGTGAA
1 AGGCAGACTTAAGGGTGAAGAAA--T-TTCTAGGGTCAAAGTCGATAGGCAGACTTAA-GGT-AA
* * * * * * *
1212636 G-AAGTCTCCT-GGGTCAAAGCTGACAA-GCACACTTGAGATG-AGTTAGTCTCCAAGGTAAAAG
61 GAAAGTCT-TTAGGGTCAAAGCCGA-AAGGCAAACTTAAGATGAAG-GAGTCTCTAAGGTCAAAG
1212697 CCGAC
123 CCGAC
* * * * ** * **
1212702 AAGCATACTGAA-GGT-AAAAAAGTCTTC-ACAGTCAAAGCCGACGGGCAGACTTAAGGGTAA-A
1 AGGCAGACTTAAGGGTGAAGAAA-T-TTCTAGGGTCAAAGTCGATAGGCAGACTTAA-GGTAAGA
** * * * * * * * ***
1212763 GAAGTCTCCAGGGTCAAAACTGACAGGTAAACTTGAGATG-AGGCAGTCTATATGGTCAAAATTG
63 -AAGTCTTTAGGGTCAAAGCCGAAAGGCAAACTTAAGATGAAGG-AGTCTCTAAGGTCAAAGCCG
1212827 AC
126 AC
** * * * * * *
1212829 AAACAGACTGAA-GGT-AAGAAAGTGTATAGGGTCAAAGCCGACAAGCAGACTTAATGGTGAAG-
1 AGGCAGACTTAAGGGTGAAGAAA-TTTCTAGGGTCAAAGTCGATAGGCAGACTTAA-GGT-AAGA
* * * * * * * *
1212891 AAGTCTTTAGAGTCAAAGCC-AGCAGGCAGACTTGAGATGAAGCAGTCTCCAAGGTCAAGGCCAA
63 AAGTCTTTAGGGTCAAAGCCGA-AAGGCAAACTTAAGATGAAGGAGTCTCTAAGGTCAAAGCCGA
1212955 C
127 C
* * * * * * * * * * *
1212956 AAGCAGAC-T-AGAGATGAGGTAGTCTCCAAGGTCAAAGCCGATAGGCAAACTGAAGGTAAGAAA
1 AGGCAGACTTAAG-GGTGAAGAAATTTCTAGGGTCAAAGTCGATAGGCAGACTTAAGGTAAGAAA
* * * * * * ** * *
1213019 GTCTTTAGGGTTAAAGCCGATAGGCAAAATTAAGGGTGAAGAAGTATCCGAGGTTAAAGTCGAC
65 GTCTTTAGGGTCAAAGCCGAAAGGCAAACTTAA-GATGAAGGAGTCTCTAAGGTCAAAGCCGAC
* * * * * * * * * * * ** * *
1213083 AGACAGTCTTAA-GGT-AAGAATATCTCCAAGGTTAATGCCGACAGGTAAACTTAAATTTATAAA
1 AGGCAGACTTAAGGGTGAAGAA-ATTTCTAGGGTCAAAGTCGATAGGCAGACTTAAGGTAAGAAA
** * ** * * * *
1213146 GTCTCCAAGGTCAAAGTTGAGAA-GCAGACTTAAGGGTGGAGAAGTCTCCT-AGGTCAAAGCCGA
65 GTCTTTAGGGTCAAAGCCGA-AAGGCAAACTTAA-GATGAAGGAGTCT-CTAAGGTCAAAGCCGA
1213209 C
127 C
* * * * * ** * * *
1213210 AGGCAGACTTAA-GATGAGGGAGTCTCTAGGGTCAAAG-CTGACCGGTAGACTGAAGGTATGAAA
1 AGGCAGACTTAAGGGTGAAGAAATTTCTAGGGTCAAAGTC-GATAGGCAGACTTAAGGTAAGAAA
* * * * * * * * * ***
1213273 GTCTCTCGTGTCACATCCGACAA-GCAAA-TTATG-GGTAAGCAACTCTCCGGGGTCAAAGCCGA
65 GTCTTTAGGGTCAAAGCCGA-AAGGCAAACTTAAGATG-AAG-GAGTCTCTAAGGTCAAAGCCGA
*
1213335 T
127 C
* * ** * * * * * *
1213336 AGGCAAACTGAA-GGT-AAGAAAGTCCCCAAGGTTAAAG-CTGACAAGCAGACTAAAGGTAAGAA
1 AGGCAGACTTAAGGGTGAAGAAA-TTTCTAGGGTCAAAGTC-GATAGGCAGACTTAAGGTAAGAA
* * * * * *
1213398 AGT-TTCCAAGGTCAAAACC-AATAGGCAGACTTGAGATG-AGGCAGTCTCTAGGGTCAAAGCCG
64 AGTCTT-TAGGGTCAAAGCCGAA-AGGCAAACTTAAGATGAAGG-AGTCTCTAAGGTCAAAGCCG
1213460 AC
126 AC
* * *** * * ** * * *
1213462 AGGCAGACTTAA-GATGAGGCTGTTTCAAGGGTCAAATTCGCCAAGCA-AATTGACGGTAAGAAA
1 AGGCAGACTTAAGGGTGAAGAAATTTCTAGGGTCAAAGTCGATAGGCAGACTT-AAGGTAAGAAA
* * * * * * ** **
1213525 GCCTTCAGGGTCAAAGACGACAGGCAAACATAAGGGTGAACAAGTCTCCT--GGTCAAAGTTGAC
65 GTCTTTAGGGTCAAAGCCGAAAGGCAAACTTAA-GATGAAGGAGTCT-CTAAGGTCAAAGCCGAC
* * * * * * * * * * * * * * *
1213588 AAGCAAACTTGA-GATG-AGTTAGTCTCCAAGGTAAAAGCCCACAGGCAGACTGAAAGTAAGAAA
1 AGGCAGACTTAAGGGTGAAG-AAATTTCTAGGGTCAAAGTCGATAGGCAGACTTAAGGTAAGAAA
** * * * * * * * * *
1213651 GTCTCCAGGGTCAAAGTCGAGAGGCAGACTTAAGGGTAAAGAAGTCTCTAGGGTTAAAGACGAC
65 GTCTTTAGGGTCAAAGCCGAAAGGCAAACTTAA-GATGAAGGAGTCTCTAAGGTCAAAGCCGAC
* * * * * * * * **
1213715 AGGTAGACTTAAGGGTGAAGAAGTCTGC-AGGGTCAAAG-CTGACAGACAGACTTGAGATGAGGG
1 AGGCAGACTTAAGGGTGAAGAAAT-TTCTAGGGTCAAAGTC-GATAGGCAGACTTAAGGTAAGAA
** * * * * * * * * * *
1213778 AGTCTCCAGGGTTAAAGCCGATAGGCAGACTTGAGATG-AGGCAATCTCCAGGGTTAGAGTCGAC
64 AGTCTTTAGGGTCAAAGCCGAAAGGCAAACTTAAGATGAAGG-AGTCTCTAAGGTCAAAGCCGAC
* * * * * * * *
1213842 CGGCAGACTGAA-GGT-AAGAAAATCTCTAGTGTCACAGCCGACAGGCAGACTTAGGGGTAA-AC
1 AGGCAGACTTAAGGGTGAAG-AAATTTCTAGGGTCAAAGTCGATAGGCAGACTTA-AGGTAAGA-
** * * * * * * * *
1213904 AAGTCTCCAAGGTCAAAGGCGACAGGCAGACTGAAGGT-AAGAAAGTCTCTAAGGTCAAAGCCGG
63 AAGTCTTTAGGGTCAAAGCCGAAAGGCAAACTTAAGATGAAG-GAGTCTCTAAGGTCAAAGCCGA
1213968 C
127 C
*** * * * * * * * **
1213969 ATAAAGAC-TAAAGGT-AAAAAAGTCTCTAGGGTCAAA-ACTGATAAGCAGACTTAAGATGAGGC
1 AGGCAGACTTAAGGGTGAAGAAA-TTTCTAGGGTCAAAGTC-GATAGGCAGACTTAAGGTAAGAA
* * * * * * * **
1214031 AGTCTCTAGGGTTAAAGCTGACAGG-AAGACTTGAGATG-AGGCTGTCTCTAGGGTCAAAGCTAA
64 AGTCTTTAGGGTCAAAGCCGAAAGGCAA-ACTTAAGATGAAGG-AGTCTCTAAGGTCAAAGCCGA
1214094 C
127 C
* * * * * * * *
1214095 AAGCAAAATGAA-GGT-AAGAAAGTCTCTAGGGTTAAAGAT-GACAAGCAGACTTAAGGGTGAAG
1 AGGCAGACTTAAGGGTGAAGAAA-TTTCTAGGGTCAAAG-TCGATAGGCAGACTTAA-GGT-AAG
* * ** * * *
1214157 -AAGTCTCTAGGGTCAAAGCCGACAGATAGACTTAAGAT-AAGGCAGTCTCCAGGGTCAAAG
62 AAAGTCTTTAGGGTCAAAGCCGAAAGGCAAACTTAAGATGAAGG-AGTCTCTAAGGTCAAAG
1214217 TTGACAAGCA
Statistics
Matches: 3138, Mismatches: 911, Indels: 491
0.69 0.20 0.11
Matches are distributed among these distances:
123 1 0.00
124 22 0.01
125 276 0.09
126 1245 0.40
127 1440 0.46
128 142 0.05
129 11 0.00
130 1 0.00
ACGTcount: A:0.36, C:0.16, G:0.28, T:0.20
Consensus pattern (127 bp):
AGGCAGACTTAAGGGTGAAGAAATTTCTAGGGTCAAAGTCGATAGGCAGACTTAAGGTAAGAAAG
TCTTTAGGGTCAAAGCCGAAAGGCAAACTTAAGATGAAGGAGTCTCTAAGGTCAAAGCCGAC
Found at i:1210378 original size:169 final size:167
Alignment explanation
Indices: 1209776--1210943 Score: 661
Period size: 169 Copynumber: 6.9 Consensus size: 167
1209766 CCTAACAAAG
* ** * * *
1209776 TCTCTAGGGTTAAAGATGATAGGCAGA-TTAAAGGTAAGAAAGTCTCTAGGGTCAAAACCGATAG
1 TCTCTAGGGTCAAAGCCGACAGGCAGACTT-AAGGTAAGAAAGTCTCTAGGGTCAAAGCTGATAG
* * * * * * * * * *
1209840 GCAGAGTTAAGATAAGGCATTCTCTAGGGTCAAAGCCAACAAGCAGACTGAAGGTAAGAAAGTTT
65 GCAAACTTAAGATGAGGCAGTCTCTAAGGTCAAAGTCGATAGGCAGACTAAAGGTAAG-AAGTTT
* * * * *
1209905 ACAAGGTCAAAGCCGATAGGCTGACTTAAGGGTGAA-GAAA
129 ACAAGGTCAAAGTCGACAAGCAGACTTAA-GGT-AATAAAA
* * * * * * * *
1209945 TTTCTAAGGTCAAAGTCGATAGGCAGACTTATGGTAAGAAAGTCTTTA-GGTCAAAG-TCGACAA
1 TCTCTAGGGTCAAAGCCGACAGGCAGACTTAAGGTAAGAAAGTCTCTAGGGTCAAAGCT-GATAG
* * * * * * *
1210008 GCAAACTTGAGATGAGGCAG-CTCTAGGGTCAAAGCCAAGAGGCAGACTTAAGGGTGAAGAAG-C
65 GCAAACTTAAGATGAGGCAGTCTCTAAGGTCAAAGTCGATAGGCAGAC-TAAAGGT-AAGAAGTT
* ** * * * * * *
1210071 TGCTGGGGTTAAAG-CTGATAGGCATA-TTGAAGGTAAGAAAG
128 TAC-AAGGTCAAAGTC-GACAAGCAGACTT-AAGGTAATAAAA
* * * * * * * *
1210112 TCTTTAGGGTCAAAGCCGAAAGGCAAACTTAAGATGAAG-GAGTGTCTAAGGTCAAAGCTGACAG
1 TCTCTAGGGTCAAAGCCGACAGGCAGACTTAAGGT-AAGAAAGTCTCTAGGGTCAAAGCTGATAG
** * ** * * ** * * *
1210176 ATAGACAAAAGGTAAGAAAGTCTCTAGGGTCAAAGTCGACAGGCAGACTTAAGGGTGAAGAAGTT
65 GCAAACTTAAGATGAGGCAGTCTCTAAGGTCAAAGTCGATAGGCAGAC-TAAAGGT-AAGAAGTT
* *
1210241 TCCAAGGTCAAAGTCGACAGGCAGACTTAAGGTAATAAAA
128 TACAAGGTCAAAGTCGACAAGCAGACTTAAGGTAATAAAA
* * * * *
1210281 TCTGC-AGGGCCAAAGCCGACTGGTAGATTTAAGGTAAGAAAGTCTCGAGGGTCAAAGCTGACT-
1 TCT-CTAGGGTCAAAGCCGACAGGCAGACTTAAGGTAAGAAAGTCTCTAGGGTCAAAGCTGA-TA
* * * *
1210344 GGTAGACTTAAGATGAGGCAGTCTTTAAGGTCAAAGAT-GATAGGCAGA-TGGAAGGTAAGAAAG
64 GGCAAACTTAAGATGAGGCAGTCTCTAAGGTCAAAG-TCGATAGGCAGACT-AAAGGTAAG-AAG
* * * * *
1210407 TCTACAGGGTCAAAGTCGGCAAGTAGACTT-AGGT-GTGAAAGA
126 TTTACAAGGTCAAAGTCGACAAGCAGACTTAAGGTAAT-AAA-A
* * * * * * *
1210449 GTCTCTAGGGTTAAAGCTGATAGGCAGACTGAATGTAA-AAAGGTCTCTAGAGTCAAAACTGATA
1 -TCTCTAGGGTCAAAGCCGACAGGCAGACTTAAGGTAAGAAA-GTCTCTAGGGTCAAAGCTGATA
* * * * *
1210513 GGCAAACTTGAGATGAGGCAGTCCCTAGGGTCAAAG-CTGATAAGCAGACTAAAGGTTAGAAAGT
64 GGCAAACTTAAGATGAGGCAGTCTCTAAGGTCAAAGTC-GATAGGCAGACTAAAGGTAAG-AAGT
* * * *
1210577 TTACAAGGTCAAAGCCGACAGGCAGACATAAGGGTGAA-GAAA
127 TTACAAGGTCAAAGTCGACAAGCAGACTTAA-GGT-AATAAAA
* * * * * * *
1210619 TTTCTAGAGTCAAAGTCGACAGGTAGACTTATGGTAAGAAAGTCTCTAGGGTCAAAGCCGATAAG
1 TCTCTAGGGTCAAAGCCGACAGGCAGACTTAAGGTAAGAAAGTCTCTAGGGTCAAAGCTGATAGG
* * * * * * * *
1210684 CAAACTTGAGATGAGGTAGTCTCTAAGGTCAAAGCCGACAGGCAAACTGAGGGTAAAAAAGTCTT
66 CAAACTTAAGATGAGGCAGTCTCTAAGGTCAAAGTCGATAGGCAGACTAAAGGT-AAGAAGT-TT
* * * * * *** *
1210749 -TAGGGTCAAAGTCGACAAGCAGACTTGAGATGAGGCAG
129 ACAAGGTCAAAGTCGACAAGCAGACTTAAGGTAATAAAA
* * * * *
1210787 TCTCTAGGGTTAAAGCCCG-CAGGCAGA-TTAAAGGTAAAAAAGTCTCCAAGGTCAAAGCTGACA
1 TCTCTAGGGTCAAAG-CCGACAGGCAGACTT-AAGGTAAGAAAGTCTCTAGGGTCAAAGCTGATA
* * * * * *
1210850 GGCAGACTTAAGGGTGAAGAAGTCTCCAAGGTCAAAGTCGATAGGCAGACTAAAGGTAAAAAAG-
64 GGCAAACTTAA-GATGAGGCAGTCTCTAAGGTCAAAGTCGATAGGCAGACTAAAGGT-AAGAAGT
* * * *
1210914 TTGCTAAGGTCAAAGCCGACATGTAGACTT
127 TTAC-AAGGTCAAAGTCGACAAGCAGACTT
1210944 GTGATGAGGC
Statistics
Matches: 768, Mismatches: 187, Indels: 88
0.74 0.18 0.08
Matches are distributed among these distances:
166 3 0.00
167 84 0.11
168 173 0.23
169 485 0.63
170 18 0.02
171 5 0.01
ACGTcount: A:0.37, C:0.15, G:0.28, T:0.20
Consensus pattern (167 bp):
TCTCTAGGGTCAAAGCCGACAGGCAGACTTAAGGTAAGAAAGTCTCTAGGGTCAAAGCTGATAGG
CAAACTTAAGATGAGGCAGTCTCTAAGGTCAAAGTCGATAGGCAGACTAAAGGTAAGAAGTTTAC
AAGGTCAAAGTCGACAAGCAGACTTAAGGTAATAAAA
Found at i:1210944 original size:169 final size:167
Alignment explanation
Indices: 1210159--1213966 Score: 1146
Period size: 169 Copynumber: 22.6 Consensus size: 167
1210149 AGGAGTGTCT
* ** * * * * *
1210159 AAGGTCAAAGCTGACAGATAGAC-AAAAGGT-AAGAAAGTCTCTAGGGTCAAAGTCGACAGGCAG
1 AAGGTCAAAGCCGACAGGCAGACTTAAGGGTGAAG-AAGTCTCTAAGGTCAAAGCCGATAGGCAG
* * * * * * * * * * *** *
1210222 ACTTAAGGGTGAAGAAGTTTCCAAGGTCAAAGTCGACAGGCAGACTTAAGGTAATAAAATCTGC-
65 ACTTAA-GGTAAAAAAGTCTCTAGGGTCAAAGCCGACAGGTAGACTTGAGATGAGGCAGTCT-CT
* * * * * *
1210286 AGGGCCAAAGCCGACTGGTAGATTTAAGGTAAGAAAGTCTCG
128 AAGGTCAAAGCCG-CAGGCAGA-TTAAGGTAAAAAAGTCTCC
* * * * * * * * **
1210328 AGGGTCAAAGCTGACTGGTAGACTTAA-GATGAGGCAGTCTTTAAGGTCAAAGATGATAGGCAGA
1 AAGGTCAAAGCCGACAGGCAGACTTAAGGGTGAAGAAGTCTCTAAGGTCAAAGCCGATAGGCAGA
* * * * * * *
1210392 -TGGAAGGTAAGAAAGTCTAC-AGGGTCAAAGTCGGCAAGTAGACTT-AGGTGTGAAAG-AGTCT
66 CT-TAAGGTAAAAAAGTCT-CTAGGGTCAAAGCCGACAGGTAGACTTGA-G-ATG-AGGCAGTCT
* * * * * * *
1210453 CTAGGGTTAAAGCTGATAGGCAGACTGAATGTAAAAAGGTCT-C
126 CTAAGGTCAAAGCCG-CAGGCAGA-TTAAGGTAAAAAAGTCTCC
* * * * * * * * * * * * *
1210496 TAGAGTCAAAACTGATAGGCAAACTTGA-GATGAGGCAGTCCCTAGGGTCAAAGCTGATAAGCAG
1 AAG-GTCAAAGCCGACAGGCAGACTTAAGGGTGAAGAAGTCTCTAAGGTCAAAGCCGATAGGCAG
* * * * * * * * * * * * *
1210560 ACTAAAGGTTAGAAAGTTTAC-AAGGTCAAAGCCGACAGGCAGACATAAGGGTGAAGAAATTTCT
65 ACTTAAGGTAAAAAAGTCT-CTAGGGTCAAAGCCGACAGGTAGACTTGA-GATGAGGCAGTCTCT
* * * * *
1210624 -AGAGTCAAAGTCGACAGGTAGACTTATGGTAAGAAAGTCTCT
128 AAG-GTCAAAGCCG-CAGGCAGA-TTAAGGTAAAAAAGTCTCC
* * * * * * * * * *
1210666 AGGGTCAAAGCCGATAAGCAAACTTGA-GATGAGGTAGTCTCTAAGGTCAAAGCCGACAGGCAAA
1 AAGGTCAAAGCCGACAGGCAGACTTAAGGGTGAAGAAGTCTCTAAGGTCAAAGCCGATAGGCAGA
* * * * * * *
1210730 CTGAGGGTAAAAAAGTCTTTAGGGTCAAAGTCGACAAGCAGACTTGAGATGAGGCAGTCTCTAGG
66 CTTAAGGTAAAAAAGTCTCTAGGGTCAAAGCCGACAGGTAGACTTGAGATGAGGCAGTCTCTAAG
*
1210795 GTTAAAGCCCGCAGGCAGATTAAAGGTAAAAAAGTCTCC
131 GTCAAAG-CCGCAGGCAGATT-AAGGTAAAAAAGTCTCC
* * *
1210834 AAGGTCAAAGCTGACAGGCAGACTTAAGGGTGAAGAAGTCTCCAAGGTCAAAGTCGATAGGCAGA
1 AAGGTCAAAGCCGACAGGCAGACTTAAGGGTGAAGAAGTCTCTAAGGTCAAAGCCGATAGGCAGA
* * * *
1210899 CTAAAGGTAAAAAAGT-TGCTAAGGTCAAAGCCGACATGTAGACTTGTGATGAGGCAGTCTCTAA
66 CTTAAGGTAAAAAAGTCT-CTAGGGTCAAAGCCGACAGGTAGACTTGAGATGAGGCAGTCTCTAA
* ** * * **
1210963 CGTCAAAGCTACG-A-TTAGACTGAAGGTAAGAAAGTCTAT
130 GGTCAAAGC--CGCAGGCAGA-TTAAGGTAAAAAAGTCTCC
* * * * * * * *
1211002 AGGGTTAAAGCTGATAGGCAGACGTAAGGGT-AAGGAAGTCTCTAGGGTTAAAACCGATAGGCAG
1 AAGGTCAAAGCCGACAGGCAGACTTAAGGGTGAA-GAAGTCTCTAAGGTCAAAGCCGATAGGCAG
* * * * * * * * *
1211066 AATGAAGCTAAGAAAGTCTCCAGGGTCAAAACCGATAGGTAGAATT-AAATGAGGCAGTCT-TCA
65 ACTTAAGGTAAAAAAGTCTCTAGGGTCAAAGCCGACAGGTAGACTTGAGATGAGGCAGTCTCT-A
* * * * * * * ** *
1211129 AGGTCAAAGCTGACCGGTAAACTTGAGATGAAGCAGTCTCT
129 AGGTCAAAGCCG-CAGGCAGA-TTAAGGTAAAAAAGTCTCC
* * * * * * * * * * *
1211170 AAGTTAAAACCCAACAGGTTA-ACTGAA-GGTAAAAAAGTCTCTAAGGTCAAAGTCGATTGGGAG
1 AAGGTCAAAGCCGACAGG-CAGACTTAAGGGTGAAGAAGTCTCTAAGGTCAAAGCCGATAGGCAG
* * * *** * * * * *
1211233 ACTTGAGATGAGGCAGTCTCTAAGGTCAAAGCTGATAGGCAGACTTGAGATGAGGCAGTCTCTAG
65 ACTTAAGGTAAAAAAGTCTCTAGGGTCAAAGCCGACAGGTAGACTTGAGATGAGGCAGTCTCTAA
* * * * *** *
1211298 GGTCAAAGCTGAATGGCAGACTTGAGATAAGGTAGT-TTC
130 GGTCAAAGCCGCA-GGCAGA-TTAAGGTAAAAAAGTCTCC
* ** * * * * *
1211337 TAGGATCAAAGCCGATGGGCAAACTTAAGGGTGAAGAAGTCTCAAAGGTCAATGCTGACAGGCAG
1 AAGG-TCAAAGCCGACAGGCAGACTTAAGGGTGAAGAAGTCTCTAAGGTCAAAGCCGATAGGCAG
* * *
1211402 ACTTAAGGTAAGAAAGTCTCTAGGGTCAAAGCTGACAGTTAGACTTGAGATGAGGCAGTCTCTAA
65 ACTTAAGGTAAAAAAGTCTCTAGGGTCAAAGCCGACAGGTAGACTTGAGATGAGGCAGTCTCTAA
*
1211467 GGTCAAAGCCGACAAGCAGATTAAAGGTAAAAAAGTCTCC
130 GGTCAAAGCCG-CAGGCAGATT-AAGGTAAAAAAGTCTCC
* * * * * *
1211507 AGGGTCAAAGCCAACAAGCAGACTTAAGGGTGAAGAAGTCTCCAAGGTCAAAGCCGACAAGCAGA
1 AAGGTCAAAGCCGACAGGCAGACTTAAGGGTGAAGAAGTCTCTAAGGTCAAAGCCGATAGGCAGA
* * * * * *
1211572 CTTATGGTAAAAAAGT-TCTCAGGGTTAAAGCTGACAGGTGGACTTGAGATGAGGTAGTCTCTAT
66 CTTAAGGTAAAAAAGTCTCT-AGGGTCAAAGCCGACAGGTAGACTTGAGATGAGGCAGTCTCTAA
* ** ** * *
1211636 GGTTAAAGCTACAGTTAGATTGAAGGTAAGAAAA-TTTAC
130 GGTCAAAGCCGCAGGCAGATT-AAGGTAA-AAAAGTCTCC
* * * * * * * *
1211675 AGGGTCAAAGCCGATA-GCTAGACGTAAAGTTGAAGAAGTCTCTACGGTTAAAGCCGATGGGCAG
1 AAGGTCAAAGCCGACAGGC-AGACTTAAGGGTGAAGAAGTCTCTAAGGTCAAAGCCGATAGGCAG
*** * * * * * *
1211739 AAAGAAGGTAAAAAAGTCTCCAAGGTCAAAACCGATAGGTAAAATTGAGATGAGGCAGTCT-TCA
65 ACTTAAGGTAAAAAAGTCTCTAGGGTCAAAGCCGACAGGTAGACTTGAGATGAGGCAGTCTCT-A
* * * * *** *
1211803 AGGTCAAAGCTGACAGGCAGACTTGAGATGAGGCAGTCTCT
129 AGGTCAAAGCCG-CAGGCAGA-TTAAGGTAAAAAAGTCTCC
* * * *
1211844 AGGGTCAAA-CCTGACAGGC-GAACTGAA-GGT-AAGAAAGTCTCTAAGGTCAAAGTCGACAGGC
1 AAGGTCAAAGCC-GACAGGCAG-ACTTAAGGGTGAAG-AAGTCTCTAAGGTCAAAGCCGATAGGC
* * * * **** * * * * * * * ***
1211905 AGATTTGAGATGAGGCTGTCTCTAAGGTTAAAGCCAATAGGCAGAC-TGAAGTTAAAAAAGTCTC
63 AGACTTAAGGTAAAAAAGTCTCTAGGGTCAAAGCCGACAGGTAGACTTG-AGATGAGGCAGTCTC
* * * * * * **
1211969 CAAGGTCAAAGCCG-ACCGTAGACTTAAGAGTGAAGAAGTTTTT
127 TAAGGTCAAAGCCGCA-GGCAGA-TTAAG-GTAAAAAAGTCTCC
* * * * * * * *
1212012 AGGGTTAAAGCCGATAGGCAGGCTTGA-GATGAAGCAGTCTC--CGGAATCAAAGCCGATAGGCA
1 AAGGTCAAAGCCGACAGGCAGACTTAAGGGTGAAGAAGTCTCTAAGG--TCAAAGCCGATAGGCA
* * * *** * * * ** * *
1212074 AACCT-AGGATGAGGTAGTCTCTAAGGTCAAAGCGGATAGCCAAACTTGAGATGTGGTCA-TCTA
64 GACTTAAGG-TAAAAAAGTCTCTAGGGTCAAAGCCGACAGGTAGACTTGAGATGAGG-CAGTCT-
* * * * *
1212137 C-AAGGTTAAAGCCGATAAGCAGACTGAAGGTAAGAAAGTCTCC
126 CTAAGGTCAAAGCCG-CAGGCAGA-TTAAGGTAAAAAAGTCTCC
* * * * * * * **
1212180 AAGGTCAAAACCGACAGGTAGACTTAAGGTTGAAGAAATGTCCAGGGTCAAAGTTGATAGGCAGA
1 AAGGTCAAAGCCGACAGGCAGACTTAAGGGTGAAGAAGTCTCTAAGGTCAAAGCCGATAGGCAGA
* * * * ** ** * * *
1212245 CTTATGGTAAGAAAGTCTCAAGGGTCAAAGCTGGTAGCCAAACTTGAGGTGAGGCAGT-TTTCAA
66 CTTAAGGTAAAAAAGTCTCTAGGGTCAAAGCCGACAGGTAGACTTGAGATGAGGCAGTCTCT-AA
* * * **
1212309 GGTTAAAGCCGACAGGCAGACTGAAGGTAATAAAGTCTTT
130 GGTCAAAGCCG-CAGGCAGA-TTAAGGTAAAAAAGTCTCC
* * * * * * * *
1212349 AGGGCCAAAGTCGACAGGCAGACTTAA-GATGAGGCAA-TCTCT-AGTGTCAAAGCTGAAAGGGA
1 AAGGTCAAAGCCGACAGGCAGACTTAAGGGTGAAG-AAGTCTCTAAG-GTCAAAGCCGATAGGCA
* *** * * ** * ** * * **
1212411 GACTTGAA-ATAAGGCAGTCTTTAGTGTCAAAGCTAATAGGTAGACTAAAGGTAAGAAAAG-CTC
64 GACTT-AAGGTAAAAAAGTCTCTAGGGTCAAAGCCGACAGGTAGACTTGAGATGAG-GCAGTCTC
* * *
1212474 TAGGGTCAAAGCCGACAGGCAGACTTAAGGGTGAAGAAGTCTCC
127 TAAGGTCAAAGCCG-CAGGCAGA-TTAA-GGTAAAAAAGTCTCC
* * * * * *
1212518 AAGGTCAAAGCTGATAGGCAGACAT-AGGGT-AAGAATGTCTCTACGGTCAAAGCCGACAGGTAG
1 AAGGTCAAAGCCGACAGGCAGACTTAAGGGTGAAGAA-GTCTCTAAGGTCAAAGCCGATAGGCAG
* * * * * *
1212581 ACTTAAGGTAAAAAGGTCT-TCAGGGTCAAAGCCGACAGGTAGACATAAGGGTGAAGAAGTCTCC
65 ACTTAAGGTAAAAAAGTCTCT-AGGGTCAAAGCCGACAGGTAGACTTGA-GATGAGGCAGTCT-C
* * * * * * * ***
1212645 T-GGGTCAAAGCTGACAAGCACACTTGAGATGAGTTAGTCTCC
127 TAAGGTCAAAGCCG-CAGGCAGA-TTAAGGTAAAAAAGTCTCC
* * * * * * **
1212687 AAGGTAAAAGCCGACAAGCATACTGAA-GGTAAAAAAGTCT-TCACA-GTCAAAGCCGACGGGCA
1 AAGGTCAAAGCCGACAGGCAGACTTAAGGGTGAAGAAGTCTCT-A-AGGTCAAAGCCGATAGGCA
* * * * * *
1212749 GACTTAAGGGTAAAGAAGTCTCCAGGGTCAAAACTGACAGGTAAACTTGAGATGAGGCAGTCTAT
64 GACTTAA-GGTAAAAAAGTCTCTAGGGTCAAAGCCGACAGGTAGACTTGAGATGAGGCAGTCTCT
* *** ** * * * **
1212814 ATGGTCAAAATTGACAAACAGACTGAAGGTAAGAAAGTGTAT
128 AAGGTCAAAGCCG-CAGGCAGA-TTAAGGTAAAAAAGTCTCC
* * * * *
1212856 AGGGTCAAAGCCGACAAGCAGACTTAATGGTGAAGAAGTCT-TTAGAGTCAAAGCC-AGCAGGCA
1 AAGGTCAAAGCCGACAGGCAGACTTAAGGGTGAAGAAGTCTCTAAG-GTCAAAGCCGA-TAGGCA
* * * ** * * * * * * * * *
1212919 GACTTGAGATGAAGCAGTCTCCAAGGTCAAGGCCAACAAGCAGACTAGAGATGAGGTAGTCTCCA
64 GACTTAAGGTAAAAAAGTCTCTAGGGTCAAAGCCGACAGGTAGACTTGAGATGAGGCAGTCTCTA
* * * * **
1212984 AGGTCAAAGCCGATAGGCAAACTGAAGGTAAGAAAGTCTTT
129 AGGTCAAAGCCG-CAGGCAGA-TTAAGGTAAAAAAGTCTCC
* * * * * * ** * * * * *
1213025 AGGGTTAAAGCCGATAGGCAAAATTAAGGGTGAAGAAGTATCCGAGGTTAAAGTCGACAGACAGT
1 AAGGTCAAAGCCGACAGGCAGACTTAAGGGTGAAGAAGTCTCTAAGGTCAAAGCCGATAGGCAGA
* * * * * * * * *** *
1213090 CTTAAGGTAAGAATA-TCTCCAAGGTTAATGCCGACAGGTAAACTT-AAATTTATAAAGTCTCCA
66 CTTAAGGTAA-AAAAGTCTCTAGGGTCAAAGCCGACAGGTAGACTTGAGA-TGAGGCAGTCTCTA
** ** *
1213153 AGGTCAAAGTTG-AGAAGCAGACTTAAGGGTGGAGAAGTCTCC
129 AGGTCAAAGCCGCAG--GCAGA-TTAA-GGTAAAAAAGTCTCC
* * * * * * ** *
1213195 TAGGTCAAAGCCGACAGGCAGACTTAA-GATGAGGGAGTCTCTAGGGTCAAAGCTGACCGGTAGA
1 AAGGTCAAAGCCGACAGGCAGACTTAAGGGTGAAGAAGTCTCTAAGGTCAAAGCCGATAGGCAGA
* ** * * * * * * * * * * * **
1213259 CTGAAGGTATGAAAGTCTCTCGTGTCACATCCGACAAGCAAATTATG-GGT-AAGCAACTCTCCG
66 CTTAAGGTAAAAAAGTCTCTAGGGTCAAAGCCGACAGGTAGACT-TGAGATGAGGC-AGTCTCTA
* * * * * *
1213322 GGGTCAAAGCCGATAGGCAAACTGAAGGTAAGAAAGTCCCC
129 AGGTCAAAGCCG-CAGGCAGA-TTAAGGTAAAAAAGTCTCC
* * * * * * * *
1213363 AAGGTTAAAGCTGACAAGCAGAC-TAAAGGT-AAGAAAGTTTCCAAGGTCAAAACCAATAGGCAG
1 AAGGTCAAAGCCGACAGGCAGACTTAAGGGTGAAG-AAGTCTCTAAGGTCAAAGCCGATAGGCAG
* * * *** * * * *
1213426 ACTTGAGATGAGGCAGTCTCTAGGGTCAAAGCCGACAGGCAGACTTAAGATGAGGCTGTTTC-AA
65 ACTTAAGGTAAAAAAGTCTCTAGGGTCAAAGCCGACAGGTAGACTTGAGATGAGGCAGTCTCTAA
** * * * * * *
1213490 GGGTCAAATTCGCCAAGCAAATTGACGGTAAGAAAGCCTTC
130 -GGTCAAAGCCG-CAGGCAGATT-AAGGTAAAAAAGTCTCC
* * * * * ** * * *
1213531 AGGGTCAAAGACGACAGGCAAACATAAGGGTGAACAAGTCTCCT--GGTCAAAGTTGACAAGCAA
1 AAGGTCAAAGCCGACAGGCAGACTTAAGGGTGAAGAAGTCT-CTAAGGTCAAAGCCGATAGGCAG
* * * *** * * * * * * * ** *
1213594 ACTTGAGATGAGTTAGTCTCCAAGGTAAAAGCCCACAGGCAGAC-TGAAAGTAAGAAAGTCTCCA
65 ACTTAAGGTAAAAAAGTCTCTAGGGTCAAAGCCGACAGGTAGACTTGAGA-TGAGGCAGTCTCTA
* * * * *
1213658 GGGTCAAAGTCGAGAGGCAGACTTAAGGGTAAAGAAGTCTCT
129 AGGTCAAAGCCG-CAGGCAGA-TTAA-GGTAAAAAAGTCTCC
* * * * * * * *
1213700 AGGGTTAAAGACGACAGGTAGACTTAAGGGTGAAGAAGTCTGC-AGGGTCAAAGCTGACAGACAG
1 AAGGTCAAAGCCGACAGGCAGACTTAAGGGTGAAGAAGTCT-CTAAGGTCAAAGCCGATAGGCAG
* * * *** * * * * * * *
1213764 ACTTGAGATGAGGGAGTCTCCAGGGTTAAAGCCGATAGGCAGACTTGAGATGAGGCAATCTCCAG
65 ACTTAAGGTAAAAAAGTCTCTAGGGTCAAAGCCGACAGGTAGACTTGAGATGAGGCAGTCTCTAA
* * * * *
1213829 GGTTAGAGTCGACCGGCAGACTGAAGGTAAGAAAA-TCT-C
130 GGTCAAAGCCG-CAGGCAGA-TTAAGGTAA-AAAAGTCTCC
* * * * * * * *
1213868 TAGTGTCACAGCCGACAGGCAGACTTAGGGGTAAACAAGTCTCCAAGGTCAAAGGCGACAGGCAG
1 AAG-GTCAAAGCCGACAGGCAGACTTAAGGGTGAAGAAGTCTCTAAGGTCAAAGCCGATAGGCAG
* * *
1213933 ACTGAAGGTAAGAAAGTCTCTAAGGTCAAAGCCG
65 ACTTAAGGTAAAAAAGTCTCTAGGGTCAAAGCCG
1213967 GCATAAAGAC
Statistics
Matches: 2705, Mismatches: 802, Indels: 264
0.72 0.21 0.07
Matches are distributed among these distances:
165 1 0.00
166 4 0.00
167 124 0.05
168 925 0.34
169 1392 0.51
170 249 0.09
171 10 0.00
ACGTcount: A:0.36, C:0.17, G:0.28, T:0.20
Consensus pattern (167 bp):
AAGGTCAAAGCCGACAGGCAGACTTAAGGGTGAAGAAGTCTCTAAGGTCAAAGCCGATAGGCAGA
CTTAAGGTAAAAAAGTCTCTAGGGTCAAAGCCGACAGGTAGACTTGAGATGAGGCAGTCTCTAAG
GTCAAAGCCGCAGGCAGATTAAGGTAAAAAAGTCTCC
Found at i:1211044 original size:253 final size:253
Alignment explanation
Indices: 1210556--1211100 Score: 589
Period size: 253 Copynumber: 2.2 Consensus size: 253
1210546 AAGCTGATAA
* * * *
1210556 GCAGACTAAAGGTTAGAAAGTTTACAAGGTCAAAGCCGACAGGCAGACATAAGGGTGAAGAAATT
1 GCAGAATAAAGGTAAGAAAGTCTCCAAGGTCAAAGCCGACAGGCAGACATAAGGGTGAAGAAATT
* * * * * * * *
1210621 TCTAGAGTCAAAGTCGACAGGTAGACTTATGGTAAGAAAGTCTCTAGGGTCAAAGCCGATAAGCA
66 CCAAGAGTCAAAGTCGACAGGCAGACTAAAGGTAAAAAAGTCTCTAAGGTCAAAGCCGACAAGCA
* * * *
1210686 AACTTGAGATGAGGTAGTCTCTAAGGTCAAAGCCGACAGGCAAACTGAGGGTAAAAAAGTCTTTA
131 AACTTGAGATGAGGCAGTCTCTAACGTCAAAGCCGACAGGCAAACTGAAGGTAAAAAAGTCTATA
* * * * *
1210751 GGGTCAAAGTCGACAAGCAGACTTGAGATGAGGCAGTCTCTAGGGTTAAAGCCCG-CAG
196 GGGTCAAAGTCGACAAGCAGACGTAAGATAAGGAAGTCTCTAGGGTTAAA-ACCGACAG
* * * * *
1210809 GCAGATTAAAGGTAAAAAAGTCTCCAAGGTCAAAGCTGACAGGCAGACTTAAGGGTGAAGAAGTC
1 GCAGAATAAAGGTAAGAAAGTCTCCAAGGTCAAAGCCGACAGGCAGACATAAGGGTGAAGAAAT-
* *
1210874 TCCAAG-GTCAAAGTCGATAGGCAGACTAAAGGTAAAAAAGT-TGCTAAGGTCAAAGCCGACATG
65 TCCAAGAGTCAAAGTCGACAGGCAGACTAAAGGTAAAAAAGTCT-CTAAGGTCAAAGCCGACAAG
* * * * ** * *
1210937 TAGACTTGTGATGAGGCAGTCTCTAACGTCAAAG-CTAC-GATTAGACTGAAGGTAAGAAAGTCT
129 CAAACTTGAGATGAGGCAGTCTCTAACGTCAAAGCCGACAG-GCAAACTGAAGGTAAAAAAGTCT
* * * * *
1211000 ATAGGGTTAAAG-CTGATAGGCAGACGTAAGGGTAAGGAAGTCTCTAGGGTTAAAACCGATAG
193 ATAGGGTCAAAGTC-GACAAGCAGACGTAA-GATAAGGAAGTCTCTAGGGTTAAAACCGACAG
* * * *
1211062 GCAGAATGAAGCTAAGAAAGTCTCCAGGGTCAAAACCGA
1 GCAGAATAAAGGTAAGAAAGTCTCCAAGGTCAAAGCCGA
1211101 TAGGTAGAAT
Statistics
Matches: 239, Mismatches: 47, Indels: 12
0.80 0.16 0.04
Matches are distributed among these distances:
251 2 0.01
252 46 0.19
253 187 0.78
254 4 0.02
ACGTcount: A:0.37, C:0.16, G:0.28, T:0.19
Consensus pattern (253 bp):
GCAGAATAAAGGTAAGAAAGTCTCCAAGGTCAAAGCCGACAGGCAGACATAAGGGTGAAGAAATT
CCAAGAGTCAAAGTCGACAGGCAGACTAAAGGTAAAAAAGTCTCTAAGGTCAAAGCCGACAAGCA
AACTTGAGATGAGGCAGTCTCTAACGTCAAAGCCGACAGGCAAACTGAAGGTAAAAAAGTCTATA
GGGTCAAAGTCGACAAGCAGACGTAAGATAAGGAAGTCTCTAGGGTTAAAACCGACAG
Found at i:1212095 original size:673 final size:671
Alignment explanation
Indices: 1210643--1212277 Score: 1864
Period size: 673 Copynumber: 2.4 Consensus size: 671
1210633 GTCGACAGGT
* * * * * * * * *
1210643 AGACTTATGGTAAGAAAGTCTCTAGGGTCAAAGCCGATAAGCAAACTTGA-GATGAGGTAGTCTC
1 AGACTTAAGATAAGGAAGTTTCTAGGATCAAAGCCGATAGGCAAACTTAAGGATGAAGAAGTCTC
* * * *
1210707 TAAGGTCAAAGCCGACAGGCAAA-CTGAGGGTAAAAAAGTCTTTAGGGTCAAAG-TCGACAAGCA
66 -AAAGTCAAAGCCGACAGGCAAACCT-AAGGTAAGAAAGTCTCTAGGGTCAAAGCT-GAC-AGCA
* *
1210770 GACTTGAGATGAGGCAGTCTCTAGGGTTAAAGCCCG-CAGGCAGATTAAAGGTAAAAAAGTCTCC
127 GACTTGAGATGAGGCAGTCTCTAAGGTTAAAG-CCGACAAGCAGATTAAAGGTAAAAAAGTCTCC
*
1210834 AAGGTCAAAGCTGACAGGCAGACTTAAGGGTGAAGAAGTCTCCAAGGTCAAAGTCGATAGGCAGA
191 AAGGTCAAAGCCGACAGGCAGACTTAAGGGTGAAGAAGTCTCCAAGGTCAAAGTCGATAGGCAGA
* * * * * *
1210899 CTAAAGGTAAAAAAGTTGCT-AAGGTCAAAGCCGACATGTAGACTTGTGATGAGGCAGTCTCTAA
256 CTTATGGTAAAAAAGTT-CTCAGGGTCAAAGCTGACAGGTAGACTTGAGATGAGGCAGTCTCTAA
* * * *
1210963 CGTCAAAGCTACGATTAGACTGAAGGTAAGAAAGTCTATAGGGTTAAAGCTGATAGGCAGACGTA
320 CGTCAAAGCTACGATTAGACTGAAGGTAAGAAAATCTACAGGGTCAAAGCCGATAGGCAGACGTA
* * * * *
1211028 AGGGTAAGGAAGTCTCTAGGGTTAAAACCGATAGGCAGAATGAAGCTAAGAAAGTCTCCAGGGTC
385 AAGGTAAGGAAGTCTCTACGGTTAAAACCGATAGGCAGAAAGAAGCTAAAAAAGTCTCCAAGGTC
* * *
1211093 AAAACCGATAGGTAGAATTAAATGAGGCAGTCTTCAAGGTCAAAGCTGACCGGTAAACTTGAGAT
450 AAAACCGATAGGTAAAATTAAATGAGGCAGTCTTCAAGGTCAAAGCTGACAGGCAAACTTGAGAT
* **
1211158 GAAGCAGTCTCTAAGTTAAAACCCAACAGGTTAACTGAAGGTAAAAAAGTCTCTAAGGTCAAAGT
515 GAAGCAGTCTCTAAGGTAAAACCCAACAGGCGAACTGAAGGTAAAAAAGTCTCTAAGGTCAAAGT
** * ** * **
1211223 CGATTGGGAGACTTGAGATGAGGCAGTCTCTAAGGTCAAAGCTGATAGGCAGACTTGAGATGAGG
580 CGACAGGCAGACTTGAGATGAGGCAGTCTCTAAGGTCAAAGCCAATAGGCAGACTTGAGATAAAA
* * * * **
1211288 CAGTCTCTAGGGTCAAAGCTGAATGGC
645 AAGTCTCCAAGGTCAAAGCCGAACCGC
* * * *
1211315 AGACTTGAGATAAGGTAGTTTCTAGGATCAAAGCCGATGGGCAAACTTAAGGGTGAAGAAGTCTC
1 AGACTTAAGATAAGGAAGTTTCTAGGATCAAAGCCGATAGGCAAACTTAAGGATGAAGAAGTCTC
* * * * *
1211380 AAAGGTCAATGCTGACAGGCAGACTTAAGGTAAGAAAGTCTCTAGGGTCAAAGCTGACAGTTAGA
66 AAA-GTCAAAGCCGACAGGCAAACCTAAGGTAAGAAAGTCTCTAGGGTCAAAGCTGACAG-CAGA
* *
1211445 CTTGAGATGAGGCAGTCTCTAAGGTCAAAGCCGACAAGCAGATTAAAGGTAAAAAAGTCTCCAGG
129 CTTGAGATGAGGCAGTCTCTAAGGTTAAAGCCGACAAGCAGATTAAAGGTAAAAAAGTCTCCAAG
* * * * *
1211510 GTCAAAGCCAACAAGCAGACTTAAGGGTGAAGAAGTCTCCAAGGTCAAAGCCGACAAGCAGACTT
194 GTCAAAGCCGACAGGCAGACTTAAGGGTGAAGAAGTCTCCAAGGTCAAAGTCGATAGGCAGACTT
* * * ** *
1211575 ATGGTAAAAAAGTTCTCAGGGTTAAAGCTGACAGGTGGACTTGAGATGAGGTAGTCTCTATGGTT
259 ATGGTAAAAAAGTTCTCAGGGTCAAAGCTGACAGGTAGACTTGAGATGAGGCAGTCTCTAACGTC
* *
1211640 AAAGCTAC-AGTTAGATTGAAGGTAAGAAAATTTACAGGGTCAAAGCCGATA-GCTAGACGTAAA
324 AAAGCTACGA-TTAGACTGAAGGTAAGAAAATCTACAGGGTCAAAGCCGATAGGC-AGACGTAAA
* * * *
1211703 GTTGAA-GAAGTCTCTACGGTTAAAGCCGATGGGCAGAAAGAAGGTAAAAAAGTCTCCAAGGTCA
387 GGT-AAGGAAGTCTCTACGGTTAAAACCGATAGGCAGAAAGAAGCTAAAAAAGTCTCCAAGGTCA
* *
1211767 AAACCGATAGGTAAAATTGAGATGAGGCAGTCTTCAAGGTCAAAGCTGACAGGCAGACTTGAGAT
451 AAACCGATAGGTAAAATT-AAATGAGGCAGTCTTCAAGGTCAAAGCTGACAGGCAAACTTGAGAT
* * * ** *
1211832 GAGGCAGTCTCTAGGGTCAAACCTGACAGGCGAACTGAAGGTAAGAAAGTCTCTAAGGTCAAAGT
515 GAAGCAGTCTCTAAGGTAAAACCCAACAGGCGAACTGAAGGTAAAAAAGTCTCTAAGGTCAAAGT
* * * *
1211897 CGACAGGCAGATTTGAGATGAGGCTGTCTCTAAGGTTAAAGCCAATAGGCAGAC-TGAAGTTAAA
580 CGACAGGCAGACTTGAGATGAGGCAGTCTCTAAGGTCAAAGCCAATAGGCAGACTTG-AGATAAA
*
1211961 AAAGTCTCCAAGGTCAAAGCCG-ACCGT
644 AAAGTCTCCAAGGTCAAAGCCGAACCGC
* * * ** * *
1211988 AGACTTAAGAGTGAA-GAAGTTTTTAGGGTTAAAGCCGATAGGCAGGCTTGA-GATGAAGCAGTC
1 AGACTTAAGA-T-AAGGAAGTTTCTAGGATCAAAGCCGATAGGCAAACTTAAGGATGAAGAAGTC
* * * ** * * *
1212051 TCCGGAA-TCAAAGCCGATAGGCAAACCT-AGGATGAGGTAGTCTCTAAGGTCAAAGCGGATAGC
64 T-C-AAAGTCAAAGCCGACAGGCAAACCTAAGG-TAAGAAAGTCTCTAGGGTCAAAGCTGACAG-
* * * * * *
1212114 CAAACTTGAGATGTGGTCA-TCTAC-AAGGTTAAAGCCGATAAGCAGACTGAAGGTAAGAAAGTC
125 CAGACTTGAGATGAGG-CAGTCT-CTAAGGTTAAAGCCGACAAGCAGATTAAAGGTAAAAAAGTC
* * * * * * *
1212177 TCCAAGGTCAAAACCGACAGGTAGACTTAAGGTTGAAGAAATGTCCAGGGTCAAAGTTGATAGGC
188 TCCAAGGTCAAAGCCGACAGGCAGACTTAAGGGTGAAGAAGTCTCCAAGGTCAAAGTCGATAGGC
*
1212242 AGACTTATGGTAAGAAAG-TCTCAAGGGTCAAAGCTG
253 AGACTTATGGTAAAAAAGTTCTC-AGGGTCAAAGCTG
1212278 GTAGCCAAAC
Statistics
Matches: 804, Mismatches: 139, Indels: 39
0.82 0.14 0.04
Matches are distributed among these distances:
672 59 0.07
673 539 0.67
674 202 0.25
675 4 0.00
ACGTcount: A:0.36, C:0.16, G:0.28, T:0.20
Consensus pattern (671 bp):
AGACTTAAGATAAGGAAGTTTCTAGGATCAAAGCCGATAGGCAAACTTAAGGATGAAGAAGTCTC
AAAGTCAAAGCCGACAGGCAAACCTAAGGTAAGAAAGTCTCTAGGGTCAAAGCTGACAGCAGACT
TGAGATGAGGCAGTCTCTAAGGTTAAAGCCGACAAGCAGATTAAAGGTAAAAAAGTCTCCAAGGT
CAAAGCCGACAGGCAGACTTAAGGGTGAAGAAGTCTCCAAGGTCAAAGTCGATAGGCAGACTTAT
GGTAAAAAAGTTCTCAGGGTCAAAGCTGACAGGTAGACTTGAGATGAGGCAGTCTCTAACGTCAA
AGCTACGATTAGACTGAAGGTAAGAAAATCTACAGGGTCAAAGCCGATAGGCAGACGTAAAGGTA
AGGAAGTCTCTACGGTTAAAACCGATAGGCAGAAAGAAGCTAAAAAAGTCTCCAAGGTCAAAACC
GATAGGTAAAATTAAATGAGGCAGTCTTCAAGGTCAAAGCTGACAGGCAAACTTGAGATGAAGCA
GTCTCTAAGGTAAAACCCAACAGGCGAACTGAAGGTAAAAAAGTCTCTAAGGTCAAAGTCGACAG
GCAGACTTGAGATGAGGCAGTCTCTAAGGTCAAAGCCAATAGGCAGACTTGAGATAAAAAAGTCT
CCAAGGTCAAAGCCGAACCGC
Found at i:1214109 original size:253 final size:255
Alignment explanation
Indices: 1213649--1214181 Score: 592
Period size: 253 Copynumber: 2.1 Consensus size: 255
1213639 GAAAGTAAGA
* * * * *
1213649 AAGTCTCCAGGGTCAAAGTCGAGAGGCAGACTTAAGGGTAAAGAAGTCTCTAGGGTTAAAGACGA
1 AAGTCTCCAGGGTCAAAGCCGACAGGCAGACTGAAGGGTAAAGAAGTCTCTAAGGTCAAAGACGA
** * * * * * * *
1213714 CAGGTAGACTTAAGGGTGAAGAAGTCTGCAGGGTCAAAGCTGACAGACAGACTTGAGATGAGGGA
66 CAGAAAGACTTAAAGGTAAAAAAGTCTGCAGGGTCAAAACTGAAAGACAGACTTAAGATGAGGCA
* * * * * **
1213779 GTCTCCAGGGTTAAAGCCGATAGGCAGACTTGAGATGAGGCAATCTCCAGGGTTAGAGTCGACCG
131 GTCTCCAGGGTTAAAGCCGACAGGAAGACTTGAGATGAGGCAATCTCCAGGGTCAAAGTCAACAA
* * * * * * *
1213844 GCAGACTGAAGGTAAGAAAATCTCTAGTGTCACAGCCGACAGGCAGACTTAGGGGTAAAC
196 GCAAAATGAAGGTAAGAAAATCTCTAGGGTCAAAGACGACAAGCAGACTTAAGGGTAAAC
* * *
1213904 AAGTCTCCAAGGTCAAAGGCGACAGGCAGACTGAA-GGT-AAGAAAGTCTCTAAGGTCAAAGCCG
1 AAGTCTCCAGGGTCAAAGCCGACAGGCAGACTGAAGGGTAAAG-AAGTCTCTAAGGTCAAAGACG
* *
1213967 GCATAAAGAC-TAAAGGTAAAAAAGTCT-CTAGGGTCAAAACTGATAAG-CAGACTTAAGATGAG
65 ACAGAAAGACTTAAAGGTAAAAAAGTCTGC-AGGGTCAAAACTGA-AAGACAGACTTAAGATGAG
* * ** *
1214029 GCAGTCTCTAGGGTTAAAGCTGACAGGAAGACTTGAGATGAGGCTGTCTCTAGGGTCAAAG-CTA
128 GCAGTCTCCAGGGTTAAAGCCGACAGGAAGACTTGAGATGAGGCAATCTCCAGGGTCAAAGTC-A
* * * * *
1214093 ACAAGCAAAATGAAGGTAAGAAAGTCTCTAGGGTTAAAGATGACAAGCAGACTTAAGGGTGAAG
192 ACAAGCAAAATGAAGGTAAGAAAATCTCTAGGGTCAAAGACGACAAGCAGACTTAAGGGTAAAC
*
1214157 AAGTCTCTAGGGTCAAAGCCGACAG
1 AAGTCTCCAGGGTCAAAGCCGACAG
1214182 ATAGACTTAA
Statistics
Matches: 229, Mismatches: 45, Indels: 10
0.81 0.16 0.04
Matches are distributed among these distances:
252 2 0.01
253 167 0.73
254 29 0.13
255 31 0.14
ACGTcount: A:0.35, C:0.17, G:0.30, T:0.18
Consensus pattern (255 bp):
AAGTCTCCAGGGTCAAAGCCGACAGGCAGACTGAAGGGTAAAGAAGTCTCTAAGGTCAAAGACGA
CAGAAAGACTTAAAGGTAAAAAAGTCTGCAGGGTCAAAACTGAAAGACAGACTTAAGATGAGGCA
GTCTCCAGGGTTAAAGCCGACAGGAAGACTTGAGATGAGGCAATCTCCAGGGTCAAAGTCAACAA
GCAAAATGAAGGTAAGAAAATCTCTAGGGTCAAAGACGACAAGCAGACTTAAGGGTAAAC
Found at i:1215015 original size:20 final size:20
Alignment explanation
Indices: 1214990--1215045 Score: 67
Period size: 20 Copynumber: 2.8 Consensus size: 20
1214980 TTTTTACCCA
* *
1214990 AATGTATTGATACATTTTTC
1 AATGTATCGATACATTTATC
* * *
1215010 AATGTATCAATACATGTATG
1 AATGTATCGATACATTTATC
1215030 AATGTATCGATACATT
1 AATGTATCGATACATT
1215046 CTGTCTTTTT
Statistics
Matches: 29, Mismatches: 7, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
20 29 1.00
ACGTcount: A:0.36, C:0.11, G:0.12, T:0.41
Consensus pattern (20 bp):
AATGTATCGATACATTTATC
Found at i:1215085 original size:71 final size:72
Alignment explanation
Indices: 1214959--1215095 Score: 179
Period size: 71 Copynumber: 1.9 Consensus size: 72
1214949 ATTTACCTAG
* * * **
1214959 ATGTATTGGTACATTCTATCTTTTTTACCCAAATGTATTGATACATTTTTCAATGTATCAATACA
1 ATGTATCGATACATTCTATCTTTTTTACCCAAATGTATCGATACATTAATCAATGTATCAATACA
1215024 TGTATGA
66 TGTATGA
* * *
1215031 ATGTATCGATACATTCTGTC-TTTTTACCCAGATGTATCGATACATTGAAT-AATGTATCGATAC
1 ATGTATCGATACATTCTATCTTTTTTACCCAAATGTATCGATACATT-AATCAATGTATCAATAC
1215094 AT
65 AT
1215096 CTAGTTAAAA
Statistics
Matches: 56, Mismatches: 8, Indels: 3
0.84 0.12 0.04
Matches are distributed among these distances:
71 38 0.68
72 18 0.32
ACGTcount: A:0.31, C:0.15, G:0.12, T:0.42
Consensus pattern (72 bp):
ATGTATCGATACATTCTATCTTTTTTACCCAAATGTATCGATACATTAATCAATGTATCAATACA
TGTATGA
Found at i:1228648 original size:27 final size:29
Alignment explanation
Indices: 1228617--1228681 Score: 82
Period size: 27 Copynumber: 2.3 Consensus size: 29
1228607 TTTTTTTTTG
**
1228617 TTTTTTTTCTTC-TTCTCTC-TTTCTTTC
1 TTTTTTTTCTTCTTTCTCTCTTTTCTCAC
*
1228644 TTTTTTTT-TTCTTTCTTTCTTTTCTCAC
1 TTTTTTTTCTTCTTTCTCTCTTTTCTCAC
1228672 TTTTTTTTCT
1 TTTTTTTTCT
1228682 CTATCTTTCT
Statistics
Matches: 32, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
26 3 0.09
27 14 0.44
28 14 0.44
29 1 0.03
ACGTcount: A:0.02, C:0.22, G:0.00, T:0.77
Consensus pattern (29 bp):
TTTTTTTTCTTCTTTCTCTCTTTTCTCAC
Found at i:1228667 original size:28 final size:29
Alignment explanation
Indices: 1228617--1228701 Score: 102
Period size: 28 Copynumber: 3.0 Consensus size: 29
1228607 TTTTTTTTTG
1228617 TTTTTTTTC-TTCTTCTCTCTTTCTTTCTT
1 TTTTTTTTCTTTCTT-TCTCTTTCTTTCTT
**
1228646 TTTTTTTTCTTTCTTTCT-TTTCTCACTT
1 TTTTTTTTCTTTCTTTCTCTTTCTTTCTT
* * *
1228674 TTTTTTCTCTATCTTTCTCTTTCCTTCT
1 TTTTTTTTCTTTCTTTCTCTTTCTTTCT
1228702 CTTTAATTTT
Statistics
Matches: 47, Mismatches: 7, Indels: 4
0.81 0.12 0.07
Matches are distributed among these distances:
28 24 0.51
29 18 0.38
30 5 0.11
ACGTcount: A:0.02, C:0.25, G:0.00, T:0.73
Consensus pattern (29 bp):
TTTTTTTTCTTTCTTTCTCTTTCTTTCTT
Found at i:1233190 original size:51 final size:49
Alignment explanation
Indices: 1233128--1233278 Score: 158
Period size: 51 Copynumber: 3.2 Consensus size: 49
1233118 TTTTAACTAG
*
1233128 ATGTATTGATACATTGAAAAATGTATCGATACATCTGGGTGAAAAGACAAA
1 ATGTATCGATACATTGAAAAATGTATCGATACATCTGGGT-AAAAGAC-AA
* * *
1233179 ATGTATCGATACATTGAAGAATGTATCGATACA--T---T--CATAC--
1 ATGTATCGATACATTGAAAAATGTATCGATACATCTGGGTAAAAGACAA
* *
1233219 ATGTATCGATACATTGAAAAATGTATTGATAAATCTGGGTAAAAGACAGA
1 ATGTATCGATACATTGAAAAATGTATCGATACATCTGGGTAAAAGACA-A
1233269 ATGTATCGAT
1 ATGTATCGAT
1233279 GAATTTAAGT
Statistics
Matches: 81, Mismatches: 9, Indels: 21
0.73 0.08 0.19
Matches are distributed among these distances:
40 30 0.37
42 1 0.01
43 3 0.04
45 1 0.01
46 1 0.01
47 3 0.04
49 1 0.01
50 10 0.12
51 31 0.38
ACGTcount: A:0.41, C:0.11, G:0.19, T:0.30
Consensus pattern (49 bp):
ATGTATCGATACATTGAAAAATGTATCGATACATCTGGGTAAAAGACAA
Found at i:1233203 original size:20 final size:19
Alignment explanation
Indices: 1233176--1233249 Score: 94
Period size: 20 Copynumber: 3.7 Consensus size: 19
1233166 GTGAAAAGAC
1233176 AAAATGTATCGATACATTG
1 AAAATGTATCGATACATTG
*
1233195 AAGAATGTATCGATACATTC
1 AA-AATGTATCGATACATTG
*
1233215 ATACATGTATCGATACATTG
1 A-AAATGTATCGATACATTG
*
1233235 AAAAATGTATTGATA
1 -AAAATGTATCGATA
1233250 AATCTGGGTA
Statistics
Matches: 47, Mismatches: 5, Indels: 5
0.82 0.09 0.09
Matches are distributed among these distances:
19 2 0.04
20 43 0.91
21 2 0.04
ACGTcount: A:0.42, C:0.11, G:0.15, T:0.32
Consensus pattern (19 bp):
AAAATGTATCGATACATTG
Found at i:1235620 original size:13 final size:13
Alignment explanation
Indices: 1235602--1235626 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
1235592 ACACAAAGTA
1235602 TGTATCGATACAT
1 TGTATCGATACAT
1235615 TGTATCGATACA
1 TGTATCGATACA
1235627 CCATAAAATG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.36
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:1235623 original size:32 final size:33
Alignment explanation
Indices: 1235582--1235649 Score: 104
Period size: 33 Copynumber: 2.1 Consensus size: 33
1235572 GTAGCCAAAC
*
1235582 TTGTATCGATACA-CA-AAGTATGTATCGATACA
1 TTGTATCGATACACCATAA-AATGTATCGATACA
1235614 TTGTATCGATACACCATAAAATGTATCGATACA
1 TTGTATCGATACACCATAAAATGTATCGATACA
1235647 TTG
1 TTG
1235650 GCTTGTAACG
Statistics
Matches: 33, Mismatches: 1, Indels: 3
0.89 0.03 0.08
Matches are distributed among these distances:
32 13 0.39
33 18 0.55
34 2 0.06
ACGTcount: A:0.37, C:0.16, G:0.15, T:0.32
Consensus pattern (33 bp):
TTGTATCGATACACCATAAAATGTATCGATACA
Found at i:1237438 original size:44 final size:42
Alignment explanation
Indices: 1237390--1237471 Score: 101
Period size: 44 Copynumber: 1.9 Consensus size: 42
1237380 GCCTGGACTT
** *
1237390 AAAGATAAGAAGGGTGCCAATGTGCTGATTTAAGACCAGCTACA
1 AAAGATAAGAAAAGTGCCAA--TACTGATTTAAGACCAGCTACA
* *
1237434 AAAGATGAGAAAAGTGCCAATACTGATTTAAGGCCAGC
1 AAAGATAAGAAAAGTGCCAATACTGATTTAAGACCAGC
1237472 GATGTTTGAC
Statistics
Matches: 33, Mismatches: 5, Indels: 2
0.82 0.12 0.05
Matches are distributed among these distances:
42 16 0.48
44 17 0.52
ACGTcount: A:0.40, C:0.16, G:0.24, T:0.20
Consensus pattern (42 bp):
AAAGATAAGAAAAGTGCCAATACTGATTTAAGACCAGCTACA
Found at i:1237919 original size:20 final size:20
Alignment explanation
Indices: 1237870--1237924 Score: 74
Period size: 21 Copynumber: 2.7 Consensus size: 20
1237860 AAAACCCTGA
* *
1237870 AAAGTATCGATACATATTTC
1 AAAGTATCGATACAGATTGC
1237890 AAATGTATCGATACAGATTGC
1 AAA-GTATCGATACAGATTGC
*
1237911 ATAGTATCGATACA
1 AAAGTATCGATACA
1237925 CACAAATATG
Statistics
Matches: 31, Mismatches: 3, Indels: 2
0.86 0.08 0.06
Matches are distributed among these distances:
20 14 0.45
21 17 0.55
ACGTcount: A:0.40, C:0.15, G:0.15, T:0.31
Consensus pattern (20 bp):
AAAGTATCGATACAGATTGC
Found at i:1237997 original size:53 final size:53
Alignment explanation
Indices: 1237914--1238050 Score: 238
Period size: 53 Copynumber: 2.6 Consensus size: 53
1237904 AGATTGCATA
*
1237914 GTATCGATACACACAAATATGTATCGATACAGGACATTCGCAGTAGCCAAATTT
1 GTATCGATACACAC-AATATGTATCGATACAGGACACTCGCAGTAGCCAAATTT
* *
1237968 GTATCGATACACACAATATGTATCGATACAGGTCACTGGCAGTAGCCAAATTT
1 GTATCGATACACACAATATGTATCGATACAGGACACTCGCAGTAGCCAAATTT
1238021 GTATCGATACACACAATATGTATCGATACA
1 GTATCGATACACACAATATGTATCGATACA
1238051 TTGGTAGTAG
Statistics
Matches: 80, Mismatches: 3, Indels: 1
0.95 0.04 0.01
Matches are distributed among these distances:
53 66 0.82
54 14 0.17
ACGTcount: A:0.36, C:0.20, G:0.17, T:0.26
Consensus pattern (53 bp):
GTATCGATACACACAATATGTATCGATACAGGACACTCGCAGTAGCCAAATTT
Found at i:1238094 original size:10 final size:10
Alignment explanation
Indices: 1238075--1238105 Score: 53
Period size: 10 Copynumber: 3.1 Consensus size: 10
1238065 ATCTCATTTT
1238075 TCACTGTTCA
1 TCACTGTTCA
*
1238085 TCACTATTCA
1 TCACTGTTCA
1238095 TCACTGTTCA
1 TCACTGTTCA
1238105 T
1 T
1238106 GTTTCGAAAC
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
10 19 1.00
ACGTcount: A:0.23, C:0.29, G:0.06, T:0.42
Consensus pattern (10 bp):
TCACTGTTCA
Found at i:1238127 original size:32 final size:29
Alignment explanation
Indices: 1238083--1238156 Score: 94
Period size: 32 Copynumber: 2.4 Consensus size: 29
1238073 TTTCACTGTT
*
1238083 CATCACTATTCATCACTGTTCATGTTTCGAAA
1 CATCACT-TTCATCACT-TTCATGTATCG-AA
*
1238115 CATCACTGTTCATCACTTTCATGTATCGAT
1 CATCACT-TTCATCACTTTCATGTATCGAA
1238145 CATCACTTTCAT
1 CATCACTTTCAT
1238157 GTATCGATAC
Statistics
Matches: 39, Mismatches: 3, Indels: 3
0.87 0.07 0.07
Matches are distributed among these distances:
29 5 0.13
30 8 0.21
31 10 0.26
32 16 0.41
ACGTcount: A:0.26, C:0.27, G:0.08, T:0.39
Consensus pattern (29 bp):
CATCACTTTCATCACTTTCATGTATCGAA
Found at i:1238149 original size:20 final size:22
Alignment explanation
Indices: 1238125--1238213 Score: 96
Period size: 20 Copynumber: 4.1 Consensus size: 22
1238115 CATCACTGTT
1238125 CATCACT-TTCATGTATCGAT-
1 CATCACTATTCATGTATCGATA
1238145 CATCACT-TTCATGTATCGATA
1 CATCACTATTCATGTATCGATA
* * *
1238166 CATCACTGTTCATACTATTC-ATG
1 CATCACTATTCAT-GTA-TCGATA
*
1238189 TATCACTATTCATGTATCGATA
1 CATCACTATTCATGTATCGATA
1238211 CAT
1 CAT
1238214 TGTATCGATA
Statistics
Matches: 57, Mismatches: 7, Indels: 8
0.79 0.10 0.11
Matches are distributed among these distances:
20 20 0.35
21 9 0.16
22 11 0.19
23 15 0.26
24 2 0.04
ACGTcount: A:0.28, C:0.24, G:0.09, T:0.39
Consensus pattern (22 bp):
CATCACTATTCATGTATCGATA
Found at i:1238169 original size:51 final size:50
Alignment explanation
Indices: 1238092--1238213 Score: 157
Period size: 51 Copynumber: 2.5 Consensus size: 50
1238082 TCATCACTAT
* *
1238092 TCATCACTGTTCATGTTTCGAAACATCACTGTTCATCACT-TTCATGTATCGA
1 TCATCACT-TTCATGTATCGATACATCACTGTTCAT-ACTATTCATGTATC-A
1238144 TCATCACTTTCATGTATCGATACATCACTGTTCATACTATTCATGTATCA
1 TCATCACTTTCATGTATCGATACATCACTGTTCATACTATTCATGTATCA
1238194 -C-T-A--TTCATGTATCGATACAT
1 TCATCACTTTCATGTATCGATACAT
1238214 TGTATCGATA
Statistics
Matches: 67, Mismatches: 2, Indels: 9
0.86 0.03 0.12
Matches are distributed among these distances:
45 17 0.25
47 1 0.01
48 1 0.01
49 1 0.01
50 4 0.06
51 35 0.52
52 8 0.12
ACGTcount: A:0.27, C:0.24, G:0.10, T:0.39
Consensus pattern (50 bp):
TCATCACTTTCATGTATCGATACATCACTGTTCATACTATTCATGTATCA
Found at i:1238196 original size:14 final size:14
Alignment explanation
Indices: 1238179--1238206 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
1238169 CACTGTTCAT
1238179 ACTATTCATGTATC
1 ACTATTCATGTATC
1238193 ACTATTCATGTATC
1 ACTATTCATGTATC
1238207 GATACATTGT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.29, C:0.21, G:0.07, T:0.43
Consensus pattern (14 bp):
ACTATTCATGTATC
Found at i:1238219 original size:13 final size:13
Alignment explanation
Indices: 1238201--1238239 Score: 69
Period size: 13 Copynumber: 3.0 Consensus size: 13
1238191 TCACTATTCA
1238201 TGTATCGATACAT
1 TGTATCGATACAT
*
1238214 TGTATCGATACAG
1 TGTATCGATACAT
1238227 TGTATCGATACAT
1 TGTATCGATACAT
1238240 CATAAATAGT
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
13 24 1.00
ACGTcount: A:0.31, C:0.15, G:0.18, T:0.36
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:1239175 original size:28 final size:28
Alignment explanation
Indices: 1239144--1239277 Score: 153
Period size: 28 Copynumber: 4.8 Consensus size: 28
1239134 GCCACTAACC
* *
1239144 TGTGGGCTTTGGAAGGGGGCCACCGACT
1 TGTGGGCTTTGAAAGGGTGCCACCGACT
** *
1239172 TGTGGGCTTAAAAAGGGTGCCACTTG-CT
1 TGTGGGCTTTGAAAGGGTGCCAC-CGACT
* *
1239200 TGTGGTCTTTGGAAGGGTGCCACCGACT
1 TGTGGGCTTTGAAAGGGTGCCACCGACT
** *
1239228 TGTGGGCTTAAAAAGGGTGCCACTGACT
1 TGTGGGCTTTGAAAGGGTGCCACCGACT
*
1239256 TGTGGGCTTTGAAAGGATGCCA
1 TGTGGGCTTTGAAAGGGTGCCA
1239278 TTGGCCTCTA
Statistics
Matches: 86, Mismatches: 18, Indels: 4
0.80 0.17 0.04
Matches are distributed among these distances:
27 1 0.01
28 84 0.98
29 1 0.01
ACGTcount: A:0.19, C:0.19, G:0.36, T:0.26
Consensus pattern (28 bp):
TGTGGGCTTTGAAAGGGTGCCACCGACT
Found at i:1239277 original size:56 final size:56
Alignment explanation
Indices: 1239114--1239277 Score: 231
Period size: 56 Copynumber: 2.9 Consensus size: 56
1239104 CATTGACTTG
* * * *
1239114 TGTGGGCCTTGAAAAAAGGTGCCACTAACCTGTGGGCTTTGGAAGGGGGCCACCGACT
1 TGTGGG-CTT-AAAAAGGGTGCCACTGACTTGTGGGCTTTGGAAGGGTGCCACCGACT
*
1239172 TGTGGGCTTAAAAAGGGTGCCACTTG-CTTGTGGTCTTTGGAAGGGTGCCACCGACT
1 TGTGGGCTTAAAAAGGGTGCCAC-TGACTTGTGGGCTTTGGAAGGGTGCCACCGACT
* *
1239228 TGTGGGCTTAAAAAGGGTGCCACTGACTTGTGGGCTTTGAAAGGATGCCA
1 TGTGGGCTTAAAAAGGGTGCCACTGACTTGTGGGCTTTGGAAGGGTGCCA
1239278 TTGGCCTCTA
Statistics
Matches: 96, Mismatches: 8, Indels: 6
0.87 0.07 0.05
Matches are distributed among these distances:
55 2 0.02
56 84 0.88
57 4 0.04
58 6 0.06
ACGTcount: A:0.21, C:0.20, G:0.34, T:0.25
Consensus pattern (56 bp):
TGTGGGCTTAAAAAGGGTGCCACTGACTTGTGGGCTTTGGAAGGGTGCCACCGACT
Found at i:1239292 original size:56 final size:56
Alignment explanation
Indices: 1239133--1239380 Score: 169
Period size: 56 Copynumber: 4.4 Consensus size: 56
1239123 TGAAAAAAGG
* * * ** * * * * *
1239133 TGCCACTAACCTGTGGGCTTTGGAAGGGGGCCACCGACTTGTGGGCTTAAAA-AGGG
1 TGCCACTGACTTGTGGGCTTTGAAAGGATGCCACTGACCTATAGGCTTAAAAGA-GA
* * * * * * * *
1239189 TGCCACTTG-CTTGTGGTCTTTGGAAGGGTGCCACCGACTTGTGGGCTTAAAA-AGGG
1 TGCCAC-TGACTTGTGGGCTTTGAAAGGATGCCACTGACCTATAGGCTTAAAAGA-GA
* * * **
1239245 TGCCACTGACTTGTGGGCTTTGAAAGGATGCCATTGGCCTCTAGGCTTTGAAGAGA
1 TGCCACTGACTTGTGGGCTTTGAAAGGATGCCACTGACCTATAGGCTTAAAAGAGA
* * * * * **
1239301 TGCCACTGACTTGTCGACTTTGAAAAGATACCACTAACCTATAGGCTTTGAAGAGA
1 TGCCACTGACTTGTGGGCTTTGAAAGGATGCCACTGACCTATAGGCTTAAAAGAGA
*
1239357 TGCCACTGACCTGTGGGCTTTGAA
1 TGCCACTGACTTGTGGGCTTTGAA
1239381 GAGATGAACG
Statistics
Matches: 162, Mismatches: 27, Indels: 6
0.83 0.14 0.03
Matches are distributed among these distances:
55 2 0.01
56 158 0.98
57 2 0.01
ACGTcount: A:0.23, C:0.21, G:0.30, T:0.27
Consensus pattern (56 bp):
TGCCACTGACTTGTGGGCTTTGAAAGGATGCCACTGACCTATAGGCTTAAAAGAGA
Found at i:1239294 original size:84 final size:84
Alignment explanation
Indices: 1239156--1239314 Score: 189
Period size: 84 Copynumber: 1.9 Consensus size: 84
1239146 TGGGCTTTGG
* * * *
1239156 AAGGGGGCCACCGACTTGTGGGCTTAAAAAGGGTGCCACTTGCTTGTGGTCTTTGGAAG-GGTGC
1 AAGGGGGCCACCGACTTGTGGGCTTAAAAAGGATGCCACTTGCCTCTGGTCTTT-GAAGAGATGC
1239220 CACCGACTTGTGGGCTTAAA
65 CACCGACTTGTGGGCTTAAA
* * **
1239240 AAGGGTGCCACTGACTTGTGGGCTTTGAAAGGATGCCA-TTGGCCTCTAGG-CTTTGAAGAGATG
1 AAGGGGGCCACCGACTTGTGGGCTTAAAAAGGATGCCACTT-GCCTCT-GGTCTTTGAAGAGATG
*
1239303 CCACTGACTTGT
64 CCACCGACTTGT
1239315 CGACTTTGAA
Statistics
Matches: 63, Mismatches: 9, Indels: 6
0.81 0.12 0.08
Matches are distributed among these distances:
83 6 0.10
84 55 0.87
85 2 0.03
ACGTcount: A:0.21, C:0.20, G:0.33, T:0.26
Consensus pattern (84 bp):
AAGGGGGCCACCGACTTGTGGGCTTAAAAAGGATGCCACTTGCCTCTGGTCTTTGAAGAGATGCC
ACCGACTTGTGGGCTTAAA
Found at i:1239321 original size:28 final size:28
Alignment explanation
Indices: 1239245--1239386 Score: 151
Period size: 28 Copynumber: 5.1 Consensus size: 28
1239235 TTAAAAAGGG
* *
1239245 TGCCACTGACTTGTGGGCTTTGAA-AGGA
1 TGCCACTGACCTGTAGGCTTTGAAGA-GA
* * *
1239273 TGCCATTGGCCTCTAGGCTTTGAAGAGA
1 TGCCACTGACCTGTAGGCTTTGAAGAGA
* * * *
1239301 TGCCACTGACTTGTCGACTTTGAAAAGA
1 TGCCACTGACCTGTAGGCTTTGAAGAGA
* * *
1239329 TACCACTAACCTATAGGCTTTGAAGAGA
1 TGCCACTGACCTGTAGGCTTTGAAGAGA
*
1239357 TGCCACTGACCTGTGGGCTTTGAAGAGA
1 TGCCACTGACCTGTAGGCTTTGAAGAGA
1239385 TG
1 TG
1239387 AACGCTCTAG
Statistics
Matches: 90, Mismatches: 23, Indels: 2
0.78 0.20 0.02
Matches are distributed among these distances:
28 89 0.99
29 1 0.01
ACGTcount: A:0.25, C:0.20, G:0.27, T:0.27
Consensus pattern (28 bp):
TGCCACTGACCTGTAGGCTTTGAAGAGA
Found at i:1254769 original size:70 final size:70
Alignment explanation
Indices: 1254655--1254788 Score: 189
Period size: 70 Copynumber: 1.9 Consensus size: 70
1254645 TTTTAACTAG
* *
1254655 ATGTATCGATACATTGAAAAATGTATCGATACATCTGGGTAAAAAGATAGAATGTATCGATACAT
1 ATGTATCGATACATTGAAAAATGTATCGATACATCTAGGTAAAAA-ACAGAATGTATCGATACAT
1254720 TCATAC
65 TCATAC
* * * * *
1254726 ATGTATGGATAC-TTGAAGAATGTATCGATACATTTATGTAAAAAACAGAATTTATCGATACAT
1 ATGTATCGATACATTGAAAAATGTATCGATACATCTAGGTAAAAAACAGAATGTATCGATACAT
1254789 CAGAGTAAAA
Statistics
Matches: 56, Mismatches: 7, Indels: 2
0.86 0.11 0.03
Matches are distributed among these distances:
69 17 0.30
70 28 0.50
71 11 0.20
ACGTcount: A:0.41, C:0.11, G:0.16, T:0.31
Consensus pattern (70 bp):
ATGTATCGATACATTGAAAAATGTATCGATACATCTAGGTAAAAAACAGAATGTATCGATACATT
CATAC
Found at i:1255550 original size:33 final size:33
Alignment explanation
Indices: 1255507--1255604 Score: 146
Period size: 33 Copynumber: 3.0 Consensus size: 33
1255497 TTGGGCATAA
1255507 TGTATCGATACAATTCTTCATGTATCGATACAT
1 TGTATCGATACAATTCTTCATGTATCGATACAT
* *
1255540 TGTATGGATACAATTCTTCATGTATTGATACAT
1 TGTATCGATACAATTCTTCATGTATCGATACAT
1255573 TGTATCGATACAATGTGC--CATGTATCGATACA
1 TGTATCGATACAAT-T-CTTCATGTATCGATACA
1255605 AACAGTGGTA
Statistics
Matches: 59, Mismatches: 4, Indels: 4
0.88 0.06 0.06
Matches are distributed among these distances:
33 57 0.97
34 1 0.02
35 1 0.02
ACGTcount: A:0.31, C:0.16, G:0.15, T:0.38
Consensus pattern (33 bp):
TGTATCGATACAATTCTTCATGTATCGATACAT
Found at i:1255660 original size:20 final size:19
Alignment explanation
Indices: 1255635--1255725 Score: 69
Period size: 20 Copynumber: 4.6 Consensus size: 19
1255625 AACCAGTTTC
1255635 ATGTATCGATACAATTGTGT
1 ATGTATCGATACAA-TGTGT
* ***
1255655 ATGTATCAATACAATGAAC
1 ATGTATCGATACAATGTGT
*
1255674 ATGTATCGATACAAAGCATG-
1 ATGTATCGATACAATG--TGT
*
1255694 ATGTATCGATAC-ATTTGGAT
1 ATGTATCGATACAATGT-G-T
1255714 ATGTATCGATAC
1 ATGTATCGATAC
1255726 TTTCAAGGGT
Statistics
Matches: 56, Mismatches: 10, Indels: 10
0.74 0.13 0.13
Matches are distributed among these distances:
17 1 0.02
18 1 0.02
19 17 0.30
20 37 0.66
ACGTcount: A:0.36, C:0.13, G:0.18, T:0.33
Consensus pattern (19 bp):
ATGTATCGATACAATGTGT
Found at i:1255698 original size:39 final size:40
Alignment explanation
Indices: 1255634--1255725 Score: 100
Period size: 39 Copynumber: 2.3 Consensus size: 40
1255624 CAACCAGTTT
*
1255634 CATGTATCGATACAATTGTGTATGTATCAATACA-ATGAA
1 CATGTATCGATACAATAGTGTATGTATCAATACATATGAA
* * *
1255673 CATGTATCGATACAA-AGCATG-ATGTATCGATACATTTGGA
1 CATGTATCGATACAATAG--TGTATGTATCAATACATATGAA
*
1255713 TATGTATCGATAC
1 CATGTATCGATAC
1255726 TTTCAAGGGT
Statistics
Matches: 45, Mismatches: 5, Indels: 5
0.82 0.09 0.09
Matches are distributed among these distances:
38 1 0.02
39 27 0.60
40 17 0.38
ACGTcount: A:0.36, C:0.14, G:0.17, T:0.33
Consensus pattern (40 bp):
CATGTATCGATACAATAGTGTATGTATCAATACATATGAA
Found at i:1264403 original size:13 final size:13
Alignment explanation
Indices: 1264385--1264411 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
1264375 TGCCAATTTC
1264385 ATGTATCGATACA
1 ATGTATCGATACA
1264398 ATGTATCGATACA
1 ATGTATCGATACA
1264411 A
1 A
1264412 AGCATGATGT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.41, C:0.15, G:0.15, T:0.30
Consensus pattern (13 bp):
ATGTATCGATACA
Found at i:1266438 original size:51 final size:52
Alignment explanation
Indices: 1266380--1266518 Score: 174
Period size: 51 Copynumber: 2.7 Consensus size: 52
1266370 TCTAGAATGA
*
1266380 AAATGTATCGATACATTTTTCATTATATCAATACATTCTAGGTTTT-GAC-C
1 AAATGTATCGATACATTTTTCAATATATCAATACATTCTAGGTTTTGGACTC
* * ** * *
1266430 TAAATGTATCGATATATTTTTCACTATATGGATCCATTCTGGGTTTTGGACTC
1 -AAATGTATCGATACATTTTTCAATATATCAATACATTCTAGGTTTTGGACTC
* *
1266483 AAATGTATCGATACATTCTTCAATGTATCAATACAT
1 AAATGTATCGATACATTTTTCAATATATCAATACAT
1266519 GCAAGCAAAT
Statistics
Matches: 73, Mismatches: 13, Indels: 3
0.82 0.15 0.03
Matches are distributed among these distances:
51 40 0.55
52 32 0.44
53 1 0.01
ACGTcount: A:0.31, C:0.16, G:0.12, T:0.41
Consensus pattern (52 bp):
AAATGTATCGATACATTTTTCAATATATCAATACATTCTAGGTTTTGGACTC
Found at i:1271203 original size:13 final size:12
Alignment explanation
Indices: 1271181--1271215 Score: 52
Period size: 13 Copynumber: 2.8 Consensus size: 12
1271171 ATGTTGCACT
1271181 TTTGATAATTTA
1 TTTGATAATTTA
1271193 TTTGTATAATTTA
1 TTTG-ATAATTTA
1271206 TTTGAATAAT
1 TTTG-ATAAT
1271216 CTTGTGTTTT
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
12 4 0.19
13 17 0.81
ACGTcount: A:0.34, C:0.00, G:0.09, T:0.57
Consensus pattern (12 bp):
TTTGATAATTTA
Found at i:1279359 original size:21 final size:21
Alignment explanation
Indices: 1279335--1279387 Score: 83
Period size: 20 Copynumber: 2.6 Consensus size: 21
1279325 TTCAACAATT
1279335 TGTATCGATACAATAAG-GCAA
1 TGTATCGATACAATAAGTG-AA
1279356 TGTATCGATAC-ATAAGTGAA
1 TGTATCGATACAATAAGTGAA
1279376 TGTATCGATACA
1 TGTATCGATACA
1279388 GGACCATGTG
Statistics
Matches: 30, Mismatches: 0, Indels: 4
0.88 0.00 0.12
Matches are distributed among these distances:
20 18 0.60
21 12 0.40
ACGTcount: A:0.40, C:0.13, G:0.19, T:0.28
Consensus pattern (21 bp):
TGTATCGATACAATAAGTGAA
Found at i:1279465 original size:40 final size:40
Alignment explanation
Indices: 1279409--1279487 Score: 115
Period size: 40 Copynumber: 2.0 Consensus size: 40
1279399 CATTCTAGAC
*
1279409 AGAAATTGTATCGATACATTTTTCAATGTA-TCGATACATA
1 AGAAATTGTATCGATACATTTCTCAATGTATTC-ATACATA
* *
1279449 AGAAATTGTATTGATACATTTCTCATTGTATTCATACAT
1 AGAAATTGTATCGATACATTTCTCAATGTATTCATACAT
1279488 TCTAGGTTTT
Statistics
Matches: 35, Mismatches: 3, Indels: 2
0.88 0.08 0.05
Matches are distributed among these distances:
40 33 0.94
41 2 0.06
ACGTcount: A:0.35, C:0.13, G:0.11, T:0.41
Consensus pattern (40 bp):
AGAAATTGTATCGATACATTTCTCAATGTATTCATACATA
Found at i:1283895 original size:20 final size:20
Alignment explanation
Indices: 1283870--1283921 Score: 77
Period size: 20 Copynumber: 2.6 Consensus size: 20
1283860 AAAAAAATTG
* *
1283870 AATGTATTGATACATTGAAA
1 AATGTATCGATACATTCAAA
*
1283890 AATGTATCGATACATTCATA
1 AATGTATCGATACATTCAAA
1283910 AATGTATCGATA
1 AATGTATCGATA
1283922 AATCTAGGTA
Statistics
Matches: 29, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
20 29 1.00
ACGTcount: A:0.42, C:0.10, G:0.13, T:0.35
Consensus pattern (20 bp):
AATGTATCGATACATTCAAA
Done.