Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Scaffold10
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 3842500
ACGTcount: A:0.32, C:0.14, G:0.14, T:0.31
Warning! 348197 characters in sequence are not A, C, G, or T
File 9 of 25
Found at i:1270506 original size:18 final size:18
Alignment explanation
Indices: 1270479--1270528 Score: 64
Period size: 18 Copynumber: 2.8 Consensus size: 18
1270469 AGGCCATTCA
* *
1270479 TTTTCATTTTTTTTTTTT
1 TTTTGATTTTTTTTTCTT
* *
1270497 TTTTGCTTTTTGTTTCTT
1 TTTTGATTTTTTTTTCTT
1270515 TTTTGATTTTTTTT
1 TTTTGATTTTTTTT
1270529 GTTAGTTTAT
Statistics
Matches: 26, Mismatches: 6, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
18 26 1.00
ACGTcount: A:0.04, C:0.06, G:0.06, T:0.84
Consensus pattern (18 bp):
TTTTGATTTTTTTTTCTT
Found at i:1271010 original size:45 final size:48
Alignment explanation
Indices: 1270920--1271016 Score: 137
Period size: 45 Copynumber: 2.1 Consensus size: 48
1270910 TCAAGGTTAA
*
1270920 CGACATTGGGCTAAGGGAAAAGTGGACCAATGTGCTGACTCAAGGCCAG
1 CGACATTGGGCTAA-GGAAAAGTGGACCAATATGCTGACTCAAGGCCAG
* *
1270969 CGACATTGGGCTTA-GAAAAGT-G-CCAATATGCTGATTCAAGGCCAG
1 CGACATTGGGCTAAGGAAAAGTGGACCAATATGCTGACTCAAGGCCAG
1271014 CGA
1 CGA
1271017 TATCGGATTT
Statistics
Matches: 45, Mismatches: 3, Indels: 4
0.87 0.06 0.08
Matches are distributed among these distances:
45 24 0.53
46 1 0.02
47 7 0.16
49 13 0.29
ACGTcount: A:0.31, C:0.21, G:0.30, T:0.19
Consensus pattern (48 bp):
CGACATTGGGCTAAGGAAAAGTGGACCAATATGCTGACTCAAGGCCAG
Found at i:1271176 original size:28 final size:28
Alignment explanation
Indices: 1271134--1272540 Score: 1645
Period size: 28 Copynumber: 49.8 Consensus size: 28
1271124 CACCGGTTTG
* * * *
1271134 TGTGGGTTTTAAAAGGGTGCCACTAACT
1 TGTGGGCTTTGAAAGGATGCCACTGACT
*
1271162 TGTGGGCTTTGAAAGGATGCCACTGATT
1 TGTGGGCTTTGAAAGGATGCCACTGACT
* *
1271190 TGTGGGCTTTGAAAAGAGTGCCACTGATT
1 TGTGGGCTTTGAAAGGA-TGCCACTGACT
* *
1271219 TGTGGGCTTTGAAAGGGTGCCATTGACT
1 TGTGGGCTTTGAAAGGATGCCACTGACT
* *
1271247 TGTGGGCTTTGAAAAGAGTGCCATTGACT
1 TGTGGGCTTTGAAAGGA-TGCCACTGACT
* *
1271276 TGTGGGCTTTGAAAGGGTGCCACTAACT
1 TGTGGGCTTTGAAAGGATGCCACTGACT
* *
1271304 TGTGGGCTTTGAAAAGAGTGCCACTGATT
1 TGTGGGCTTTGAAAGGA-TGCCACTGACT
1271333 TGTGGGCTTTGAAAGGATGCCACTGACT
1 TGTGGGCTTTGAAAGGATGCCACTGACT
* * *
1271361 CGTGGGCTTTAAAAGGATGCCACTGATT
1 TGTGGGCTTTGAAAGGATGCCACTGACT
* * *
1271389 TGTGGGCTTTGAAAAGTTGCCACCGACT
1 TGTGGGCTTTGAAAGGATGCCACTGACT
* * * * *
1271417 CGTGGGCTTTAAAAAGACGCCACTGATT
1 TGTGGGCTTTGAAAGGATGCCACTGACT
* *
1271445 TGTGGGCTTTGAAAGGTTGCCACTAACT
1 TGTGGGCTTTGAAAGGATGCCACTGACT
*
1271473 TATGGGCTTTGAAAGGATGCCACTGACT
1 TGTGGGCTTTGAAAGGATGCCACTGACT
* * *
1271501 CGTGGGCTTTAAAAGGATGCCACTGATT
1 TGTGGGCTTTGAAAGGATGCCACTGACT
* * * * *
1271529 TATGGACTTTGAAAGGTTGTCACTAACT
1 TGTGGGCTTTGAAAGGATGCCACTGACT
*
1271557 TGTGGGCTTTGAAAAGAGTGCCACTGACT
1 TGTGGGCTTTGAAAGGA-TGCCACTGACT
* * *
1271586 TGTGGGCTTTGAAAAGTTGCCACCGACT
1 TGTGGGCTTTGAAAGGATGCCACTGACT
* ** *
1271614 CGTGGGCTTCAAAAGGATGCCACTGATT
1 TGTGGGCTTTGAAAGGATGCCACTGACT
* * *
1271642 TGTGGGCTTTAAAAGGCTGCCACTAACT
1 TGTGGGCTTTGAAAGGATGCCACTGACT
* * * *
1271670 CGTGGGCTTTAAAAGGATGCCACTAATT
1 TGTGGGCTTTGAAAGGATGCCACTGACT
* *
1271698 TGTGGGCTTTGAAAGGTTGCCACTAACT
1 TGTGGGCTTTGAAAGGATGCCACTGACT
*
1271726 TGTGGGCTTTGAAAAGAGTGCCACTGACT
1 TGTGGGCTTTGAAAGGA-TGCCACTGACT
* * * * *
1271755 TGTGGGCTTTAAAAAGTTACCACCGA-T
1 TGTGGGCTTTGAAAGGATGCCACTGACT
* *
1271782 TCGTGGGCTTTAAAAGGATGCCACTGATT
1 T-GTGGGCTTTGAAAGGATGCCACTGACT
* *
1271811 TGTGGGCTTTGAAAGGTTGCCA-TTACCT
1 TGTGGGCTTTGAAAGGATGCCACTGA-CT
1271839 TGTGGGCTTTGAAAGGATGCCACTGACT
1 TGTGGGCTTTGAAAGGATGCCACTGACT
* *
1271867 CGTGGGCTTTAAAAGGATGCCACTGACT
1 TGTGGGCTTTGAAAGGATGCCACTGACT
* *
1271895 TGTGGGCTTTGAAAGGTTGCCACCGACT
1 TGTGGGCTTTGAAAGGATGCCACTGACT
* *
1271923 CGTGGGCTTTGAAAGGATGCCACTGATT
1 TGTGGGCTTTGAAAGGATGCCACTGACT
* *
1271951 TGTGGGCTTTGAAAGGTTGCCACTAACT
1 TGTGGGCTTTGAAAGGATGCCACTGACT
* * *
1271979 TATGGGCTTTGAAAAGAGTGCCATTGACT
1 TGTGGGCTTTGAAAGGA-TGCCACTGACT
1272008 TGTGGGCTTTGAAAGGATGCCACTGACT
1 TGTGGGCTTTGAAAGGATGCCACTGACT
1272036 TGTGGGCTTTGAAAGGATGCCACTGACT
1 TGTGGGCTTTGAAAGGATGCCACTGACT
* *
1272064 TGTGGGCTTTGAAAAGATGCCACTGATT
1 TGTGGGCTTTGAAAGGATGCCACTGACT
* * *
1272092 TGTGGGCTTTGAAAGGTTGCCAGTAACT
1 TGTGGGCTTTGAAAGGATGCCACTGACT
* *
1272120 TGTGGGCTTTGAAAAGAGTGCCACTAACT
1 TGTGGGCTTTGAAAGGA-TGCCACTGACT
*
1272149 TGTGGGCTTTGAAAAGATGCCACTGACT
1 TGTGGGCTTTGAAAGGATGCCACTGACT
* **
1272177 TATGGGCTTTGAAAAAAGTGCCACTGACT
1 TGTGGGCTTTGAAAGGA-TGCCACTGACT
* *
1272206 TGTGGGCTTTGAAAAGATGCCACTGATT
1 TGTGGGCTTTGAAAGGATGCCACTGACT
* * *
1272234 TGTAGGCTTTGAAAGGTTGCCACTAACT
1 TGTGGGCTTTGAAAGGATGCCACTGACT
1272262 TGTGGGCTTTGAAAGGATGCCACTGACT
1 TGTGGGCTTTGAAAGGATGCCACTGACT
* *
1272290 TGTGGGCTTTGAAAAGAGTGCCACTAACT
1 TGTGGGCTTTGAAAGGA-TGCCACTGACT
**
1272319 TGTGGGCTTTGAAAAAAGTGCCACTGACT
1 TGTGGGCTTTGAAAGGA-TGCCACTGACT
*
1272348 CGTGGGCTTTGAAAGGATGCCACTGACT
1 TGTGGGCTTTGAAAGGATGCCACTGACT
*
1272376 TGTGGGCTTTGAAAAGAGTGCCACTGACT
1 TGTGGGCTTTGAAAGGA-TGCCACTGACT
*
1272405 TGTGGGCTTTGAAAGGGTGCCACTGACT
1 TGTGGGCTTTGAAAGGATGCCACTGACT
* *
1272433 TGCGGGCTTTGAAAAGAGTGCCACTGAGC-
1 TGTGGGCTTTGAAAGGA-TGCCACTGA-CT
* * *
1272462 TATGGGCTTTGAAAGGATGCCACGGAGT
1 TGTGGGCTTTGAAAGGATGCCACTGACT
* * * *
1272490 TGTGTGGAC-TTAAAAAGATGCCACGGAGT
1 TGTG-GG-CTTTGAAAGGATGCCACTGACT
* *
1272519 TGTGGAC-TTAAAAGGATGCCAC
1 TGTGGGCTTTGAAAGGATGCCAC
1272541 AGTGTTGTGG
Statistics
Matches: 1187, Mismatches: 173, Indels: 39
0.85 0.12 0.03
Matches are distributed among these distances:
27 19 0.02
28 834 0.70
29 332 0.28
30 2 0.00
ACGTcount: A:0.24, C:0.17, G:0.29, T:0.29
Consensus pattern (28 bp):
TGTGGGCTTTGAAAGGATGCCACTGACT
Found at i:1271401 original size:56 final size:56
Alignment explanation
Indices: 1271134--1272796 Score: 1585
Period size: 56 Copynumber: 29.6 Consensus size: 56
1271124 CACCGGTTTG
* * * *
1271134 TGTGGGTTTTAAAAGGGTGCCACTAACTTGTGGGCTTTGAAAGGATGCCACTGATT
1 TGTGGGCTTTAAAAGGATGCCACTGACTTGTGGGCTTTGAAAGGATGCCACTGACT
* * *
1271190 TGTGGGCTTTGAAAA-GAGTGCCACTGATTTGTGGGCTTTGAAAGGGTGCCATTGACT
1 TGTGGGCTTT-AAAAGGA-TGCCACTGACTTGTGGGCTTTGAAAGGATGCCACTGACT
* * *
1271247 TGTGGGCTTTGAAAA-GAGTGCCATTGACTTGTGGGCTTTGAAAGGGTGCCACTAACT
1 TGTGGGCTTT-AAAAGGA-TGCCACTGACTTGTGGGCTTTGAAAGGATGCCACTGACT
*
1271304 TGTGGGCTTTGAAAA-GAGTGCCACTGATTTGTGGGCTTTGAAAGGATGCCACTGACT
1 TGTGGGCTTT-AAAAGGA-TGCCACTGACTTGTGGGCTTTGAAAGGATGCCACTGACT
* * * * *
1271361 CGTGGGCTTTAAAAGGATGCCACTGATTTGTGGGCTTTGAAAAGTTGCCACCGACT
1 TGTGGGCTTTAAAAGGATGCCACTGACTTGTGGGCTTTGAAAGGATGCCACTGACT
* * * * * *
1271417 CGTGGGCTTTAAAAAGACGCCACTGATTTGTGGGCTTTGAAAGGTTGCCACTAACT
1 TGTGGGCTTTAAAAGGATGCCACTGACTTGTGGGCTTTGAAAGGATGCCACTGACT
* * * * *
1271473 TATGGGCTTTGAAAGGATGCCACTGACTCGTGGGCTTTAAAAGGATGCCACTGATT
1 TGTGGGCTTTAAAAGGATGCCACTGACTTGTGGGCTTTGAAAGGATGCCACTGACT
* * * * * * *
1271529 TATGGACTTTGAAAGGTTGTCACTAACTTGTGGGCTTTGAAAAGAGTGCCACTGACT
1 TGTGGGCTTTAAAAGGATGCCACTGACTTGTGGGCTTTGAAAGGA-TGCCACTGACT
* * * ** *
1271586 TGTGGGCTTTGAAAA-GTTGCCACCGACTCGTGGGCTTCAAAAGGATGCCACTGATT
1 TGTGGGCTTT-AAAAGGATGCCACTGACTTGTGGGCTTTGAAAGGATGCCACTGACT
* * * * * *
1271642 TGTGGGCTTTAAAAGGCTGCCACTAACTCGTGGGCTTTAAAAGGATGCCACTAATT
1 TGTGGGCTTTAAAAGGATGCCACTGACTTGTGGGCTTTGAAAGGATGCCACTGACT
* * * *
1271698 TGTGGGCTTTGAAAGGTTGCCACTAACTTGTGGGCTTTGAAAAGAGTGCCACTGACT
1 TGTGGGCTTTAAAAGGATGCCACTGACTTGTGGGCTTTGAAAGGA-TGCCACTGACT
* * * * * *
1271755 TGTGGGCTTTAAAAAGTTACCACCGA-TTCGTGGGCTTTAAAAGGATGCCACTGATT
1 TGTGGGCTTTAAAAGGATGCCACTGACTT-GTGGGCTTTGAAAGGATGCCACTGACT
* * *
1271811 TGTGGGCTTTGAAAGGTTGCCA-TTACCTTGTGGGCTTTGAAAGGATGCCACTGACT
1 TGTGGGCTTTAAAAGGATGCCACTGA-CTTGTGGGCTTTGAAAGGATGCCACTGACT
* * *
1271867 CGTGGGCTTTAAAAGGATGCCACTGACTTGTGGGCTTTGAAAGGTTGCCACCGACT
1 TGTGGGCTTTAAAAGGATGCCACTGACTTGTGGGCTTTGAAAGGATGCCACTGACT
* * * * *
1271923 CGTGGGCTTTGAAAGGATGCCACTGATTTGTGGGCTTTGAAAGGTTGCCACTAACT
1 TGTGGGCTTTAAAAGGATGCCACTGACTTGTGGGCTTTGAAAGGATGCCACTGACT
* *
1271979 TATGGGCTTTGAAAA-GAGTGCCATTGACTTGTGGGCTTTGAAAGGATGCCACTGACT
1 TGTGGGCTTT-AAAAGGA-TGCCACTGACTTGTGGGCTTTGAAAGGATGCCACTGACT
* * *
1272036 TGTGGGCTTTGAAAGGATGCCACTGACTTGTGGGCTTTGAAAAGATGCCACTGATT
1 TGTGGGCTTTAAAAGGATGCCACTGACTTGTGGGCTTTGAAAGGATGCCACTGACT
* * * * * *
1272092 TGTGGGCTTTGAAAGGTTGCCAGTAACTTGTGGGCTTTGAAAAGAGTGCCACTAACT
1 TGTGGGCTTTAAAAGGATGCCACTGACTTGTGGGCTTTGAAAGGA-TGCCACTGACT
* **
1272149 TGTGGGCTTTGAAAA-GATGCCACTGACTTATGGGCTTTGAAAAAAGTGCCACTGACT
1 TGTGGGCTTT-AAAAGGATGCCACTGACTTGTGGGCTTTGAAAGGA-TGCCACTGACT
* * * *
1272206 TGTGGGCTTTGAAAA-GATGCCACTGATTTGTAGGCTTTGAAAGGTTGCCACTAACT
1 TGTGGGCTTT-AAAAGGATGCCACTGACTTGTGGGCTTTGAAAGGATGCCACTGACT
* * *
1272262 TGTGGGCTTTGAAAGGATGCCACTGACTTGTGGGCTTTGAAAAGAGTGCCACTAACT
1 TGTGGGCTTTAAAAGGATGCCACTGACTTGTGGGCTTTGAAAGGA-TGCCACTGACT
* *
1272319 TGTGGGCTTTGAAAA-AAGTGCCACTGACTCGTGGGCTTTGAAAGGATGCCACTGACT
1 TGTGGGCTTT-AAAAGGA-TGCCACTGACTTGTGGGCTTTGAAAGGATGCCACTGACT
*
1272376 TGTGGGCTTTGAAAA-GAGTGCCACTGACTTGTGGGCTTTGAAAGGGTGCCACTGACT
1 TGTGGGCTTT-AAAAGGA-TGCCACTGACTTGTGGGCTTTGAAAGGATGCCACTGACT
* * * *
1272433 TGCGGGCTTTGAAAA-GAGTGCCACTGAGC-TATGGGCTTTGAAAGGATGCCACGGAGT
1 TGTGGGCTTT-AAAAGGA-TGCCACTGA-CTTGTGGGCTTTGAAAGGATGCCACTGACT
* * * * * * **
1272490 TGTGTGGAC-TTAAAAAGATGCCACGGAGTTGTGGAC-TTAAAAGGATGCCACAGTGT
1 TGTG-GG-CTTTAAAAGGATGCCACTGACTTGTGGGCTTTGAAAGGATGCCACTGACT
* * * ** *** *
1272546 TGTGGACTTTAAAA-GAGTGCCACAGAGTTGTGAACTCAAAAAGG-TGCCAC-GAAGT
1 TGTGGGCTTTAAAAGGA-TGCCACTGACTTGTGGGCTTTGAAAGGATGCCACTG-ACT
* * * ** * * * * *
1272601 TATGGACTTTAAAAGGATGCCACAGTGTTGTGGAC-TTAAAAGGGTGCCACGGAGT
1 TGTGGGCTTTAAAAGGATGCCACTGACTTGTGGGCTTTGAAAGGATGCCACTGACT
* * * * * * * * * *
1272656 GGTGGACTTTAAAA-GAGTGCCACAGAGTTGTTGAC-TTAAAAGGGTGCCACGGAGT
1 TGTGGGCTTTAAAAGGA-TGCCACTGACTTGTGGGCTTTGAAAGGATGCCACTGACT
* * * * * * *
1272711 TGTGGACTTT-AAAGGGTGCCAC-GACGTTGTGGAC-TTAAAAGGGTGCCACGGAGT
1 TGTGGGCTTTAAAAGGATGCCACTGAC-TTGTGGGCTTTGAAAGGATGCCACTGACT
* * * *
1272765 TGTGGACTTAAAAAGG-TGCCACGGATTTGTGG
1 TGTGGGCTTTAAAAGGATGCCACTGACTTGTGG
1272797 ACTTACAAGG
Statistics
Matches: 1401, Mismatches: 169, Indels: 76
0.85 0.10 0.05
Matches are distributed among these distances:
53 2 0.00
54 69 0.05
55 142 0.10
56 602 0.43
57 543 0.39
58 42 0.03
59 1 0.00
ACGTcount: A:0.25, C:0.17, G:0.30, T:0.28
Consensus pattern (56 bp):
TGTGGGCTTTAAAAGGATGCCACTGACTTGTGGGCTTTGAAAGGATGCCACTGACT
Found at i:1271614 original size:113 final size:111
Alignment explanation
Indices: 1271134--1272796 Score: 1517
Period size: 113 Copynumber: 14.8 Consensus size: 111
1271124 CACCGGTTTG
* * * * * *
1271134 TGTGGGTTTTAAAAGGGTGCCACTAACTTGTGGGCTTTGAAAGGATGCCACTGATTTGTGGGCTT
1 TGTGGGCTTTGAAAGGATGCCACTGACTTGTGGGCTTTAAAAGGATGCCACTGACTTGTGGGCTT
* * *
1271199 TGAAAAGAGTGCCACTGATTTGTGGGCTTTGAAAGGGTGCCATTGACT
66 TG-AAAG-GTGCCACTGACTTGTGGGCTTTGAAAAGGTGCCACTGACT
* * * * *
1271247 TGTGGGCTTTGAAAAGAGTGCCATTGACTTGTGGGCTTTGAAAGGGTGCCACTAACTTGTGGGCT
1 TGTGGGCTTTGAAAGGA-TGCCACTGACTTGTGGGCTTTAAAAGGATGCCACTGACTTGTGGGCT
*
1271312 TTGAAAAGAGTGCCACTGATTTGTGGGCTTTG-AAAGGATGCCACTGACT
65 TTG-AAAG-GTGCCACTGACTTGTGGGCTTTGAAAAGG-TGCCACTGACT
* * * * * *
1271361 CGTGGGCTTTAAAAGGATGCCACTGATTTGTGGGCTTTGAAAA-GTTGCCACCGACTCGTGGGCT
1 TGTGGGCTTTGAAAGGATGCCACTGACTTGTGGGCTTT-AAAAGGATGCCACTGACTTGTGGGCT
* ** * *
1271425 TTAAAAAGACGCCACTGATTTGTGGGCTTTG-AAAGGTTGCCACTAACT
65 TT-GAAAGGTGCCACTGACTTGTGGGCTTTGAAAAGG-TGCCACTGACT
* * * * *
1271473 TATGGGCTTTGAAAGGATGCCACTGACTCGTGGGCTTTAAAAGGATGCCACTGATTTATGGACTT
1 TGTGGGCTTTGAAAGGATGCCACTGACTTGTGGGCTTTAAAAGGATGCCACTGACTTGTGGGCTT
* *
1271538 TGAAAGGTTGTCACTAACTTGTGGGCTTTGAAAAGAGTGCCACTGACT
66 TGAAAGG-TGCCACTGACTTGTGGGCTTTGAAAAG-GTGCCACTGACT
* * * * * *
1271586 TGTGGGCTTTGAAAAGTTGCCACCGACTCGTGGGCTTCAAAAGGATGCCACTGATTTGTGGGCTT
1 TGTGGGCTTTGAAAGGATGCCACTGACTTGTGGGCTTTAAAAGGATGCCACTGACTTGTGGGCTT
* * * * *
1271651 TAAAAGGCTGCCACTAACTCGTGGGCTTT-AAAAGGATGCCACTAATT
66 TGAAAGG-TGCCACTGACTTGTGGGCTTTGAAAAGG-TGCCACTGACT
* *
1271698 TGTGGGCTTTGAAAGGTTGCCACTAACTTGTGGGCTTTGAAAA-GAGTGCCACTGACTTGTGGGC
1 TGTGGGCTTTGAAAGGATGCCACTGACTTGTGGGCTTT-AAAAGGA-TGCCACTGACTTGTGGGC
* * * * *
1271762 TTTAAAAAGTTACCACCGA-TTCGTGGGCTTT-AAAAGGATGCCACTGATT
64 TTT-GAAAGGTGCCACTGACTT-GTGGGCTTTGAAAAGG-TGCCACTGACT
* * * *
1271811 TGTGGGCTTTGAAAGGTTGCCA-TTACCTTGTGGGCTTTGAAAGGATGCCACTGACTCGTGGGCT
1 TGTGGGCTTTGAAAGGATGCCACTGA-CTTGTGGGCTTTAAAAGGATGCCACTGACTTGTGGGCT
* *
1271875 TTAAAAGGATGCCACTGACTTGTGGGCTTTG-AAAGGTTGCCACCGACT
65 TTGAAAGG-TGCCACTGACTTGTGGGCTTTGAAAAGG-TGCCACTGACT
* * * * * *
1271923 CGTGGGCTTTGAAAGGATGCCACTGATTTGTGGGCTTTGAAAGGTTGCCACTAACTTATGGGCTT
1 TGTGGGCTTTGAAAGGATGCCACTGACTTGTGGGCTTTAAAAGGATGCCACTGACTTGTGGGCTT
*
1271988 TGAAAAGAGTGCCATTGACTTGTGGGCTTTG-AAAGGATGCCACTGACT
66 TG-AAAG-GTGCCACTGACTTGTGGGCTTTGAAAAGG-TGCCACTGACT
*
1272036 TGTGGGCTTTGAAAGGATGCCACTGACTTGTGGGCTTTGAAAA-GATGCCACTGATTTGTGGGCT
1 TGTGGGCTTTGAAAGGATGCCACTGACTTGTGGGCTTT-AAAAGGATGCCACTGACTTGTGGGCT
* * *
1272100 TTGAAAGGTTGCCAGTAACTTGTGGGCTTTGAAAAGAGTGCCACTAACT
65 TTGAAAGG-TGCCACTGACTTGTGGGCTTTGAAAAG-GTGCCACTGACT
* * *
1272149 TGTGGGCTTTGAAAAGATGCCACTGACTTATGGGCTTTGAAAA-AAGTGCCACTGACTTGTGGGC
1 TGTGGGCTTTGAAAGGATGCCACTGACTTGTGGGCTTT-AAAAGGA-TGCCACTGACTTGTGGGC
* * * *
1272213 TTTGAAAAGATGCCACTGATTTGTAGGCTTTG-AAAGGTTGCCACTAACT
64 TTTG-AAAGGTGCCACTGACTTGTGGGCTTTGAAAAGG-TGCCACTGACT
*
1272262 TGTGGGCTTTGAAAGGATGCCACTGACTTGTGGGCTTTGAAAA-GAGTGCCACTAACTTGTGGGC
1 TGTGGGCTTTGAAAGGATGCCACTGACTTGTGGGCTTT-AAAAGGA-TGCCACTGACTTGTGGGC
* *
1272326 TTTGAAAAAAGTGCCACTGACTCGTGGGCTTTG-AAAGGATGCCACTGACT
64 TTTG--AAAGGTGCCACTGACTTGTGGGCTTTGAAAAGG-TGCCACTGACT
* * * *
1272376 TGTGGGCTTTGAAAAGAGTGCCACTGACTTGTGGGCTTTGAAAGGGTGCCACTGACTTGCGGGCT
1 TGTGGGCTTTGAAAGGA-TGCCACTGACTTGTGGGCTTTAAAAGGATGCCACTGACTTGTGGGCT
* * *
1272441 TTGAAAAGAGTGCCACTGAGC-TATGGGCTTTG-AAAGGATGCCACGGAGT
65 TTG-AAAG-GTGCCACTGA-CTTGTGGGCTTTGAAAAGG-TGCCACTGACT
* * * * * * ** *
1272490 TGTGTGGAC-TTAAAAAGATGCCACGGAGTTGTGGAC-TTAAAAGGATGCCACAGTGTTGTGGAC
1 TGTG-GG-CTTTGAAAGGATGCCACTGACTTGTGGGCTTTAAAAGGATGCCACTGACTTGTGGGC
* * * ** ** *
1272553 TTTAAAAGAGTGCCACAGAGTTGTGAAC-TCAAAAAGGTGCCAC-GAAGT
64 TTTGAAAG-GTGCCACTGACTTGTGGGCTTTGAAAAGGTGCCACTG-ACT
* * * * ** * * * * * *
1272601 TATGGACTTTAAAAGGATGCCACAGTGTTGTGGAC-TTAAAAGGGTGCCACGGAGTGGTGGACTT
1 TGTGGGCTTTGAAAGGATGCCACTGACTTGTGGGCTTTAAAAGGATGCCACTGACTTGTGGGCTT
* * * * * * *
1272665 TAAAAGAGTGCCACAGAGTTGTTGAC-TT-AAAAGGGTGCCACGGAGT
66 TGAAAG-GTGCCACTGACTTGTGGGCTTTGAAAA-GGTGCCACTGACT
* * * * * * *
1272711 TGTGGACTTT-AAAGGGTGCCAC-GACGTTGTGGAC-TTAAAAGGGTGCCACGGAGTTGTGGACT
1 TGTGGGCTTTGAAAGGATGCCACTGAC-TTGTGGGCTTTAAAAGGATGCCACTGACTTGTGGGCT
** * *
1272773 TAAAAAGGTGCCACGGATTTGTGG
65 TTGAAAGGTGCCACTGACTTGTGG
1272797 ACTTACAAGG
Statistics
Matches: 1338, Mismatches: 170, Indels: 89
0.84 0.11 0.06
Matches are distributed among these distances:
108 15 0.01
109 57 0.04
110 96 0.07
111 29 0.02
112 312 0.23
113 510 0.38
114 281 0.21
115 37 0.03
116 1 0.00
ACGTcount: A:0.25, C:0.17, G:0.30, T:0.28
Consensus pattern (111 bp):
TGTGGGCTTTGAAAGGATGCCACTGACTTGTGGGCTTTAAAAGGATGCCACTGACTTGTGGGCTT
TGAAAGGTGCCACTGACTTGTGGGCTTTGAAAAGGTGCCACTGACT
Found at i:1272530 original size:27 final size:27
Alignment explanation
Indices: 1272477--1272863 Score: 389
Period size: 27 Copynumber: 14.1 Consensus size: 27
1272467 GCTTTGAAAG
1272477 GATGCCACGGAGTTGTGTGGACTTAAAAA
1 GATGCCACGGAG-T-TGTGGACTTAAAAA
*
1272506 GATGCCACGGAGTTGTGGACTTAAAAG
1 GATGCCACGGAGTTGTGGACTTAAAAA
* * *
1272533 GATGCCACAGTGTTGTGGACTTTAAAA
1 GATGCCACGGAGTTGTGGACTTAAAAA
* * *
1272560 GAGTGCCACAGAGTTGTGAACTCAAAAA
1 GA-TGCCACGGAGTTGTGGACTTAAAAA
* * * *
1272588 GGTGCCACGAAGTTATGGACTTTAAAAG
1 GATGCCACGGAGTTGTGGAC-TTAAAAA
* * *
1272616 GATGCCACAGTGTTGTGGACTTAAAAG
1 GATGCCACGGAGTTGTGGACTTAAAAA
* * *
1272643 GGTGCCACGGAGTGGTGGACTTTAAAA
1 GATGCCACGGAGTTGTGGACTTAAAAA
* * *
1272670 GAGTGCCACAGAGTTGTTGACTTAAAAG
1 GA-TGCCACGGAGTTGTGGACTTAAAAA
* * *
1272698 GGTGCCACGGAGTTGTGGACTTTAAAG
1 GATGCCACGGAGTTGTGGACTTAAAAA
* *
1272725 GGTGCCAC-GACGTTGTGGACTTAAAAG
1 GATGCCACGGA-GTTGTGGACTTAAAAA
*
1272752 GGTGCCACGGAGTTGTGGACTTAAAAA
1 GATGCCACGGAGTTGTGGACTTAAAAA
* * * *
1272779 GGTGCCACGGATTTGTGGACTTACAAG
1 GATGCCACGGAGTTGTGGACTTAAAAA
* * *
1272806 GGTGTCACGGAGTTGTGGACTTTAAAA
1 GATGCCACGGAGTTGTGGACTTAAAAA
*
1272833 GAGTGCGACGGAGTTGTGGACTTTAAAAA
1 GA-TGCCACGGAGTTGTGGAC-TTAAAAA
1272862 GA
1 GA
1272864 AATGCCACTG
Statistics
Matches: 300, Mismatches: 51, Indels: 14
0.82 0.14 0.04
Matches are distributed among these distances:
26 2 0.01
27 196 0.65
28 82 0.27
29 20 0.07
ACGTcount: A:0.29, C:0.15, G:0.32, T:0.24
Consensus pattern (27 bp):
GATGCCACGGAGTTGTGGACTTAAAAA
Found at i:1272566 original size:28 final size:28
Alignment explanation
Indices: 1271141--1272860 Score: 611
Period size: 28 Copynumber: 61.2 Consensus size: 28
1271131 TTGTGTGGGT
* ** * *
1271141 TTTAAAAGGGTGCCACTAACTTGTGGGC
1 TTTAAAAGAGTGCCACGGAGTTGTGGAC
* * * *
1271169 TTTGAAAG-GATGCCACTGATTTGTGGGC
1 TTTAAAAGAG-TGCCACGGAGTTGTGGAC
* * *
1271197 TTTGAAAAGAGTGCCACTGATTTGTGGGC
1 TTT-AAAAGAGTGCCACGGAGTTGTGGAC
* * ** * *
1271226 TTTGAAAGGGTGCCATTGACTTGTGGGC
1 TTTAAAAGAGTGCCACGGAGTTGTGGAC
** * *
1271254 TTTGAAAAGAGTGCCATTGACTTGTGGGC
1 TTT-AAAAGAGTGCCACGGAGTTGTGGAC
* * ** * *
1271283 TTTGAAAGGGTGCCACTAACTTGTGGGC
1 TTTAAAAGAGTGCCACGGAGTTGTGGAC
* * *
1271311 TTTGAAAAGAGTGCCACTGATTTGTGGGC
1 TTT-AAAAGAGTGCCACGGAGTTGTGGAC
* * * * *
1271340 TTTGAAAG-GATGCCACTGACTCGTGGGC
1 TTTAAAAGAG-TGCCACGGAGTTGTGGAC
* * *
1271368 TTTAAAAG-GATGCCACTGATTTGTGGGC
1 TTTAAAAGAG-TGCCACGGAGTTGTGGAC
* * * * *
1271396 TTTGAAAAG-TTGCCACCGACTCGTGGGC
1 TTT-AAAAGAGTGCCACGGAGTTGTGGAC
* * * *
1271424 TTTAAAA-AGACGCCACTGATTTGTGGGC
1 TTTAAAAGAG-TGCCACGGAGTTGTGGAC
* ** * * *
1271452 TTTGAAAG-GTTGCCACTAACTTATGGGC
1 TTTAAAAGAG-TGCCACGGAGTTGTGGAC
* * * * *
1271480 TTTGAAAG-GATGCCACTGACTCGTGGGC
1 TTTAAAAGAG-TGCCACGGAGTTGTGGAC
* * *
1271508 TTTAAAAG-GATGCCACTGATTTATGGAC
1 TTTAAAAGAG-TGCCACGGAGTTGTGGAC
* * ** * *
1271536 TTTGAAAG-GTTGTCACTAACTTGTGGGC
1 TTTAAAAGAG-TGCCACGGAGTTGTGGAC
* * *
1271564 TTTGAAAAGAGTGCCACTGACTTGTGGGC
1 TTT-AAAAGAGTGCCACGGAGTTGTGGAC
* * * * *
1271593 TTTGAAAAG-TTGCCACCGACTCGTGGGC
1 TTT-AAAAGAGTGCCACGGAGTTGTGGAC
* * * *
1271621 TTCAAAAG-GATGCCACTGATTTGTGGGC
1 TTTAAAAGAG-TGCCACGGAGTTGTGGAC
** * * *
1271649 TTTAAAAG-GCTGCCACTAACTCGTGGGC
1 TTTAAAAGAG-TGCCACGGAGTTGTGGAC
** * *
1271677 TTTAAAAG-GATGCCACTAATTTGTGGGC
1 TTTAAAAGAG-TGCCACGGAGTTGTGGAC
* ** * *
1271705 TTTGAAAG-GTTGCCACTAACTTGTGGGC
1 TTTAAAAGAG-TGCCACGGAGTTGTGGAC
* * *
1271733 TTTGAAAAGAGTGCCACTGACTTGTGGGC
1 TTT-AAAAGAGTGCCACGGAGTTGTGGAC
* * *
1271762 TTTAAAA-AGTTACCACCGA-TTCGTGGGC
1 TTTAAAAGAG-TGCCACGGAGTT-GTGGAC
* * *
1271790 TTTAAAAG-GATGCCACTGATTTGTGGGC
1 TTTAAAAGAG-TGCCACGGAGTTGTGGAC
* ** * *
1271818 TTTGAAAG-GTTGCCA-TTACCTTGTGGGC
1 TTTAAAAGAG-TGCCACGGA-GTTGTGGAC
* * * * *
1271846 TTTGAAAG-GATGCCACTGACTCGTGGGC
1 TTTAAAAGAG-TGCCACGGAGTTGTGGAC
* * *
1271874 TTTAAAAG-GATGCCACTGACTTGTGGGC
1 TTTAAAAGAG-TGCCACGGAGTTGTGGAC
* * * * *
1271902 TTTGAAAG-GTTGCCACCGACTCGTGGGC
1 TTTAAAAGAG-TGCCACGGAGTTGTGGAC
* * * *
1271930 TTTGAAAG-GATGCCACTGATTTGTGGGC
1 TTTAAAAGAG-TGCCACGGAGTTGTGGAC
* ** * * *
1271958 TTTGAAAG-GTTGCCACTAACTTATGGGC
1 TTTAAAAGAG-TGCCACGGAGTTGTGGAC
** * *
1271986 TTTGAAAAGAGTGCCATTGACTTGTGGGC
1 TTT-AAAAGAGTGCCACGGAGTTGTGGAC
* * * *
1272015 TTTGAAAG-GATGCCACTGACTTGTGGGC
1 TTTAAAAGAG-TGCCACGGAGTTGTGGAC
* * * *
1272043 TTTGAAAG-GATGCCACTGACTTGTGGGC
1 TTTAAAAGAG-TGCCACGGAGTTGTGGAC
* * *
1272071 TTTGAAAAGA-TGCCACTGATTTGTGGGC
1 TTT-AAAAGAGTGCCACGGAGTTGTGGAC
* * * *
1272099 TTTGAAAG-GTTGCCA-GTAACTTGTGGGC
1 TTTAAAAGAG-TGCCACG-GAGTTGTGGAC
** * *
1272127 TTTGAAAAGAGTGCCACTAACTTGTGGGC
1 TTT-AAAAGAGTGCCACGGAGTTGTGGAC
* * * *
1272156 TTTGAAAAGA-TGCCACTGACTTATGGGC
1 TTT-AAAAGAGTGCCACGGAGTTGTGGAC
* * * *
1272184 TTTGAAAAAAGTGCCACTGACTTGTGGGC
1 TTT-AAAAGAGTGCCACGGAGTTGTGGAC
* *
1272213 TTTGAAAAGA-TGCCACTGATTTGTAGG-C
1 TTT-AAAAGAGTGCCACGGAGTTGT-GGAC
* ** * *
1272241 TTTGAAAG-GTTGCCACTAACTTGTGGGC
1 TTTAAAAGAG-TGCCACGGAGTTGTGGAC
* * * *
1272269 TTTGAAAG-GATGCCACTGACTTGTGGGC
1 TTTAAAAGAG-TGCCACGGAGTTGTGGAC
** * *
1272297 TTTGAAAAGAGTGCCACTAACTTGTGGGC
1 TTT-AAAAGAGTGCCACGGAGTTGTGGAC
* * * * *
1272326 TTTGAAAAAAGTGCCACTGACTCGTGGGC
1 TTT-AAAAGAGTGCCACGGAGTTGTGGAC
* * * *
1272355 TTTGAAAG-GATGCCACTGACTTGTGGGC
1 TTTAAAAGAG-TGCCACGGAGTTGTGGAC
* * *
1272383 TTTGAAAAGAGTGCCACTGACTTGTGGGC
1 TTT-AAAAGAGTGCCACGGAGTTGTGGAC
* * * * * *
1272412 TTTGAAAGGGTGCCACTGACTTGCGGGC
1 TTTAAAAGAGTGCCACGGAGTTGTGGAC
* * * *
1272440 TTTGAAAAGAGTGCCACTGAGCTATGGGC
1 TTT-AAAAGAGTGCCACGGAGTTGTGGAC
*
1272469 TTTGAAAG-GATGCCACGGAGTTGTGTGGAC
1 TTTAAAAGAG-TGCCACGGAG-T-TGTGGAC
*
1272499 TTAAAAAGA-TGCCACGGAGTTGTGGAC
1 TTTAAAAGAGTGCCACGGAGTTGTGGAC
* *
1272526 -TTAAAAG-GATGCCACAGTGTTGTGGAC
1 TTTAAAAGAG-TGCCACGGAGTTGTGGAC
* *
1272553 TTTAAAAGAGTGCCACAGAGTTGTGAAC
1 TTTAAAAGAGTGCCACGGAGTTGTGGAC
** * *
1272581 TCAAAAAG-GTGCCACGAAGTTATGGAC
1 TTTAAAAGAGTGCCACGGAGTTGTGGAC
* *
1272608 TTTAAAAG-GATGCCACAGTGTTGTGGAC
1 TTTAAAAGAG-TGCCACGGAGTTGTGGAC
* *
1272636 -TTAAAAGGGTGCCACGGAGTGGTGGAC
1 TTTAAAAGAGTGCCACGGAGTTGTGGAC
* *
1272663 TTTAAAAGAGTGCCACAGAGTTGTTGAC
1 TTTAAAAGAGTGCCACGGAGTTGTGGAC
*
1272691 -TTAAAAGGGTGCCACGGAGTTGTGGAC
1 TTTAAAAGAGTGCCACGGAGTTGTGGAC
*
1272718 TTT-AAAGGGTGCCAC-GACGTTGTGGAC
1 TTTAAAAGAGTGCCACGGA-GTTGTGGAC
*
1272745 -TTAAAAGGGTGCCACGGAGTTGTGGAC
1 TTTAAAAGAGTGCCACGGAGTTGTGGAC
* *
1272772 TTAAAAAG-GTGCCACGGATTTGTGGAC
1 TTTAAAAGAGTGCCACGGAGTTGTGGAC
* * *
1272799 -TTACAAGGGTGTCACGGAGTTGTGGAC
1 TTTAAAAGAGTGCCACGGAGTTGTGGAC
*
1272826 TTTAAAAGAGTGCGACGGAGTTGTGGAC
1 TTTAAAAGAGTGCCACGGAGTTGTGGAC
1272854 TTTAAAA
1 TTTAAAA
1272861 AGAAATGCCA
Statistics
Matches: 1439, Mismatches: 192, Indels: 122
0.82 0.11 0.07
Matches are distributed among these distances:
26 15 0.01
27 198 0.14
28 879 0.61
29 329 0.23
30 18 0.01
ACGTcount: A:0.25, C:0.17, G:0.30, T:0.28
Consensus pattern (28 bp):
TTTAAAAGAGTGCCACGGAGTTGTGGAC
Found at i:1272648 original size:82 final size:82
Alignment explanation
Indices: 1272473--1272860 Score: 471
Period size: 82 Copynumber: 4.7 Consensus size: 82
1272463 ATGGGCTTTG
* *
1272473 AAAGGATGCCACGGAGTTGTGTGGACTTAAAAAGATGCCACGGAGTTGTGGAC-TTAAAAGGATG
1 AAAGGGTGCCACGGAG-T-TGTGGACTTAAAAAGGTGCCACGGAGTTGTGGACTTTAAAAGGATG
1272537 CCACAGTGTTGTGGACTTTA
64 CCACAGTGTTGTGGAC-TTA
* * * * * *
1272557 AAAGAGTGCCACAGAGTTGTGAACTCAAAAAGGTGCCACGAAGTTATGGACTTTAAAAGGATGCC
1 AAAGGGTGCCACGGAGTTGTGGACTTAAAAAGGTGCCACGGAGTTGTGGACTTTAAAAGGATGCC
1272622 ACAGTGTTGTGGACTTA
66 ACAGTGTTGTGGACTTA
* * * * *
1272639 AAAGGGTGCCACGGAGTGGTGGACTTTAAAAGAGTGCCACAGAGTTGTTGAC-TTAAAAGGGTGC
1 AAAGGGTGCCACGGAGTTGTGGACTTAAAAAG-GTGCCACGGAGTTGTGGACTTTAAAAGGATGC
* * *
1272703 CACGGAGTTGTGGACTTT
65 CACAGTGTTGTGGACTTA
* *
1272721 AAAGGGTGCCAC-GACGTTGTGGACTTAAAAGGGTGCCACGGAGTTGTGGACTTAAAAAGG-TGC
1 AAAGGGTGCCACGGA-GTTGTGGACTTAAAAAGGTGCCACGGAGTTGTGGACTTTAAAAGGATGC
*
1272784 CACGGAT-TTGTGGACTTA
65 CACAG-TGTTGTGGACTTA
* * * *
1272802 CAAGGGTGTCACGGAGTTGTGGACTTTAAAAGAGTGCGACGGAGTTGTGGACTTTAAAA
1 AAAGGGTGCCACGGAGTTGTGGACTTAAAAAG-GTGCCACGGAGTTGTGGACTTTAAAA
1272861 AGAAATGCCA
Statistics
Matches: 261, Mismatches: 36, Indels: 16
0.83 0.12 0.05
Matches are distributed among these distances:
81 62 0.24
82 143 0.55
83 43 0.16
84 13 0.05
ACGTcount: A:0.29, C:0.15, G:0.32, T:0.24
Consensus pattern (82 bp):
AAAGGGTGCCACGGAGTTGTGGACTTAAAAAGGTGCCACGGAGTTGTGGACTTTAAAAGGATGCC
ACAGTGTTGTGGACTTA
Found at i:1280702 original size:24 final size:24
Alignment explanation
Indices: 1280675--1280733 Score: 93
Period size: 24 Copynumber: 2.5 Consensus size: 24
1280665 CATATTTTTT
1280675 TCTTTTTTTTTTCTTTCTT-CTTCA
1 TCTTTTTTTTTTCTTTCTTACTT-A
1280699 TCTTTTTTTTTTCTTTCTTACTTA
1 TCTTTTTTTTTTCTTTCTTACTTA
*
1280723 ACTTTTTTTTT
1 TCTTTTTTTTT
1280734 CAGCCCATAA
Statistics
Matches: 33, Mismatches: 1, Indels: 2
0.92 0.03 0.06
Matches are distributed among these distances:
24 30 0.91
25 3 0.09
ACGTcount: A:0.07, C:0.17, G:0.00, T:0.76
Consensus pattern (24 bp):
TCTTTTTTTTTTCTTTCTTACTTA
Found at i:1281405 original size:18 final size:16
Alignment explanation
Indices: 1281373--1281414 Score: 57
Period size: 18 Copynumber: 2.5 Consensus size: 16
1281363 CAGGCCACTC
1281373 ATTTTTTTTTTTTTTG
1 ATTTTTTTTTTTTTTG
*
1281389 CTTTTTGTTTCTTTTTTG
1 ATTTTT-TTT-TTTTTTG
1281407 ATTTTTTT
1 ATTTTTTT
1281415 GTTAGTTTAT
Statistics
Matches: 22, Mismatches: 2, Indels: 3
0.81 0.07 0.11
Matches are distributed among these distances:
16 5 0.23
17 5 0.23
18 12 0.55
ACGTcount: A:0.05, C:0.05, G:0.07, T:0.83
Consensus pattern (16 bp):
ATTTTTTTTTTTTTTG
Found at i:1283406 original size:17 final size:17
Alignment explanation
Indices: 1283373--1283421 Score: 55
Period size: 17 Copynumber: 2.8 Consensus size: 17
1283363 TATATGATAA
1283373 AAATATAAAA-TATATAT
1 AAATATAAAATTA-ATAT
1283390 AAATATAAAATTAATAT
1 AAATATAAAATTAATAT
* *
1283407 ATATTATATAATTAA
1 A-AATATAAAATTAA
1283422 AAATAGATCT
Statistics
Matches: 28, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
17 15 0.54
18 13 0.46
ACGTcount: A:0.61, C:0.00, G:0.00, T:0.39
Consensus pattern (17 bp):
AAATATAAAATTAATAT
Found at i:1283516 original size:17 final size:17
Alignment explanation
Indices: 1283475--1283518 Score: 63
Period size: 18 Copynumber: 2.6 Consensus size: 17
1283465 ATTAAATTTG
*
1283475 ATTT-TTTTTTACTTCA
1 ATTTATTTTTTACTTAA
1283491 ATTTAATTTTTTACTTAA
1 ATTT-ATTTTTTACTTAA
1283509 ATTTATTTTT
1 ATTTATTTTT
1283519 AAATTTAATA
Statistics
Matches: 25, Mismatches: 1, Indels: 3
0.86 0.03 0.10
Matches are distributed among these distances:
16 4 0.16
17 6 0.24
18 15 0.60
ACGTcount: A:0.25, C:0.07, G:0.00, T:0.68
Consensus pattern (17 bp):
ATTTATTTTTTACTTAA
Found at i:1283917 original size:15 final size:15
Alignment explanation
Indices: 1283892--1283941 Score: 52
Period size: 13 Copynumber: 3.4 Consensus size: 15
1283882 TTTTACTTTT
1283892 TATTT-TATTTGAAA
1 TATTTATATTTGAAA
1283906 TATTTATATTTG--A
1 TATTTATATTTGAAA
*
1283919 TATTTTTATTTGATATA
1 TATTTATATTTGA-A-A
1283936 TATTTA
1 TATTTA
1283942 AATATAAATA
Statistics
Matches: 29, Mismatches: 2, Indels: 7
0.76 0.05 0.18
Matches are distributed among these distances:
13 12 0.41
14 5 0.17
15 6 0.21
17 6 0.21
ACGTcount: A:0.32, C:0.00, G:0.06, T:0.62
Consensus pattern (15 bp):
TATTTATATTTGAAA
Found at i:1284035 original size:15 final size:15
Alignment explanation
Indices: 1284000--1284029 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
1283990 ATTTAAAAAT
*
1284000 AAATATATTTATATC
1 AAATATAATTATATC
1284015 AAATATAATTATATC
1 AAATATAATTATATC
1284030 TGATATTTAT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.50, C:0.07, G:0.00, T:0.43
Consensus pattern (15 bp):
AAATATAATTATATC
Found at i:1285555 original size:20 final size:20
Alignment explanation
Indices: 1285514--1285555 Score: 50
Period size: 20 Copynumber: 2.1 Consensus size: 20
1285504 AAATAACATG
* *
1285514 TATAAAATATTAAAATATAA
1 TATAAAATAATAAAATAAAA
1285534 TATAAATATAATAAAA-AAAA
1 TATAAA-ATAATAAAATAAAA
1285554 TA
1 TA
1285556 ACATAAATAT
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
20 11 0.58
21 8 0.42
ACGTcount: A:0.69, C:0.00, G:0.00, T:0.31
Consensus pattern (20 bp):
TATAAAATAATAAAATAAAA
Found at i:1285638 original size:19 final size:19
Alignment explanation
Indices: 1285616--1285667 Score: 59
Period size: 19 Copynumber: 2.7 Consensus size: 19
1285606 GTATTAATAT
*
1285616 TATTTTTTTATATTCATAA
1 TATTTTTTAATATTCATAA
* * * *
1285635 TATTTTCTCATATTTATAT
1 TATTTTTTAATATTCATAA
1285654 TATTTTTTAATATT
1 TATTTTTTAATATT
1285668 ACATTGATGT
Statistics
Matches: 27, Mismatches: 6, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
19 27 1.00
ACGTcount: A:0.29, C:0.06, G:0.00, T:0.65
Consensus pattern (19 bp):
TATTTTTTAATATTCATAA
Found at i:1285743 original size:24 final size:24
Alignment explanation
Indices: 1285698--1285744 Score: 58
Period size: 24 Copynumber: 2.0 Consensus size: 24
1285688 ATTTCATACG
* *
1285698 TATTATTTTTTCATGTCATATTTA
1 TATTATTTTCTCATGACATATTTA
* *
1285722 TATTATTTTCTCGTGACGTATTT
1 TATTATTTTCTCATGACATATTT
1285745 GTGTTACTTT
Statistics
Matches: 19, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
24 19 1.00
ACGTcount: A:0.21, C:0.11, G:0.09, T:0.60
Consensus pattern (24 bp):
TATTATTTTCTCATGACATATTTA
Found at i:1285815 original size:16 final size:20
Alignment explanation
Indices: 1285789--1285831 Score: 58
Period size: 17 Copynumber: 2.4 Consensus size: 20
1285779 TTTTATATCA
1285789 AATTTTATTTAT-TT-GTAT
1 AATTTTATTTATATTCGTAT
1285807 -ATTTT-TTTATATTCGTAT
1 AATTTTATTTATATTCGTAT
1285825 AATTTTA
1 AATTTTA
1285832 CATTTTACAA
Statistics
Matches: 21, Mismatches: 0, Indels: 6
0.78 0.00 0.22
Matches are distributed among these distances:
16 5 0.24
17 7 0.33
18 4 0.19
19 5 0.24
ACGTcount: A:0.28, C:0.02, G:0.05, T:0.65
Consensus pattern (20 bp):
AATTTTATTTATATTCGTAT
Found at i:1288167 original size:12 final size:13
Alignment explanation
Indices: 1288136--1288179 Score: 54
Period size: 13 Copynumber: 3.3 Consensus size: 13
1288126 ATCTCAATTT
1288136 AAATATAAATATAA
1 AAAT-TAAATATAA
1288150 ATAATTAAAT-TAA
1 A-AATTAAATATAA
*
1288163 AAATTAAACATAA
1 AAATTAAATATAA
1288176 AAAT
1 AAAT
1288180 CAAACTATTT
Statistics
Matches: 27, Mismatches: 1, Indels: 5
0.82 0.03 0.15
Matches are distributed among these distances:
12 7 0.26
13 11 0.41
14 6 0.22
15 3 0.11
ACGTcount: A:0.68, C:0.02, G:0.00, T:0.30
Consensus pattern (13 bp):
AAATTAAATATAA
Found at i:1289675 original size:2 final size:2
Alignment explanation
Indices: 1289668--1289709 Score: 84
Period size: 2 Copynumber: 21.0 Consensus size: 2
1289658 CGAAGGGAAT
1289668 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1289710 ATTTGTATTG
Statistics
Matches: 40, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 40 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:1289986 original size:16 final size:16
Alignment explanation
Indices: 1289962--1290010 Score: 62
Period size: 16 Copynumber: 3.1 Consensus size: 16
1289952 GAAATCAATA
* *
1289962 TTAATTTTAATTTAAT
1 TTAAATTTAAATTAAT
*
1289978 TTAAATTTAAATTGAT
1 TTAAATTTAAATTAAT
*
1289994 TTAAACTTAAATTAAT
1 TTAAATTTAAATTAAT
1290010 T
1 T
1290011 CAAGTCAAAA
Statistics
Matches: 28, Mismatches: 5, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
16 28 1.00
ACGTcount: A:0.43, C:0.02, G:0.02, T:0.53
Consensus pattern (16 bp):
TTAAATTTAAATTAAT
Found at i:1290560 original size:13 final size:13
Alignment explanation
Indices: 1290542--1290571 Score: 51
Period size: 13 Copynumber: 2.3 Consensus size: 13
1290532 TTAGTACTTA
*
1290542 AAATCTTTAAAAC
1 AAATCTTAAAAAC
1290555 AAATCTTAAAAAC
1 AAATCTTAAAAAC
1290568 AAAT
1 AAAT
1290572 TTTCTGTCAT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.60, C:0.13, G:0.00, T:0.27
Consensus pattern (13 bp):
AAATCTTAAAAAC
Found at i:1292420 original size:29 final size:28
Alignment explanation
Indices: 1292366--1292428 Score: 67
Period size: 29 Copynumber: 2.2 Consensus size: 28
1292356 AACGAGAAGG
* * *
1292366 ATATTTTTATGTATTTTTATTGTATTTGT
1 ATATTTTTATGTATTATAATTATATTT-T
1292395 ATATTTTTAAT-TATTATAATTATATTTT
1 ATATTTTT-ATGTATTATAATTATATTTT
1292423 -TATTTT
1 ATATTTT
1292429 ATATTTATAT
Statistics
Matches: 30, Mismatches: 3, Indels: 4
0.81 0.08 0.11
Matches are distributed among these distances:
27 6 0.20
28 1 0.03
29 21 0.70
30 2 0.07
ACGTcount: A:0.27, C:0.00, G:0.05, T:0.68
Consensus pattern (28 bp):
ATATTTTTATGTATTATAATTATATTTT
Found at i:1292436 original size:19 final size:19
Alignment explanation
Indices: 1292377--1292438 Score: 72
Period size: 19 Copynumber: 3.2 Consensus size: 19
1292367 TATTTTTATG
*
1292377 TATTTTTATTGTAT-TTGTA
1 TATTTTTATTTTATATT-TA
*
1292396 TATTTTTAATTATTATAATTA
1 TATTTTT-ATT-TTATATTTA
1292417 TATTTTTATTTTATATTTA
1 TATTTTTATTTTATATTTA
1292436 TAT
1 TAT
1292439 AAATTTTATT
Statistics
Matches: 37, Mismatches: 3, Indels: 6
0.80 0.07 0.13
Matches are distributed among these distances:
19 18 0.49
20 6 0.16
21 12 0.32
22 1 0.03
ACGTcount: A:0.29, C:0.00, G:0.03, T:0.68
Consensus pattern (19 bp):
TATTTTTATTTTATATTTA
Found at i:1292438 original size:40 final size:40
Alignment explanation
Indices: 1292377--1292540 Score: 102
Period size: 40 Copynumber: 3.8 Consensus size: 40
1292367 TATTTTTATG
*
1292377 TATTTTTATTGTAT-TTGTATATTTTTAATTATTATAATTA
1 TATTTTTATTTTATATT-TATATTTTTAATTATTATAATTA
*
1292417 TATTTTTATTTTATATTTATATAAATTTTATTATATTAATAATTTA
1 TATTTTTATTTTATATTTATAT---TTTTAAT-TATT-ATAA-TTA
* * *
1292463 TATTATATAAATTTTAATATTTTTATATATTTATATTATTTTAAATTA
1 TATT-T-T-TATTTT-ATA--TTTATATTTTTA-ATTATTAT-AATTA
* *
1292511 T-TTTTTATATAATA-TTATA-TTTTAATTATT
1 TATTTTTATTTTATATTTATATTTTTAATTATT
1292541 TTTTTAATCA
Statistics
Matches: 99, Mismatches: 10, Indels: 32
0.70 0.07 0.23
Matches are distributed among these distances:
38 6 0.06
39 4 0.04
40 23 0.23
41 2 0.02
43 9 0.09
44 7 0.07
45 5 0.05
46 8 0.08
47 3 0.03
48 6 0.06
49 15 0.15
50 4 0.04
52 7 0.07
ACGTcount: A:0.35, C:0.00, G:0.01, T:0.63
Consensus pattern (40 bp):
TATTTTTATTTTATATTTATATTTTTAATTATTATAATTA
Found at i:1292452 original size:14 final size:14
Alignment explanation
Indices: 1292433--1292478 Score: 56
Period size: 14 Copynumber: 3.0 Consensus size: 14
1292423 TATTTTATAT
1292433 TTATATAAATTTTA
1 TTATATAAATTTTA
1292447 TTATATTAATAATTTATA
1 TTATA-T-A-AATTT-TA
1292465 TTATATAAATTTTA
1 TTATATAAATTTTA
1292479 ATATTTTTAT
Statistics
Matches: 28, Mismatches: 0, Indels: 8
0.78 0.00 0.22
Matches are distributed among these distances:
14 7 0.25
15 6 0.21
16 2 0.07
17 6 0.21
18 7 0.25
ACGTcount: A:0.43, C:0.00, G:0.00, T:0.57
Consensus pattern (14 bp):
TTATATAAATTTTA
Found at i:1292452 original size:20 final size:19
Alignment explanation
Indices: 1292421--1292470 Score: 59
Period size: 18 Copynumber: 2.6 Consensus size: 19
1292411 TAATTATATT
*
1292421 TTTATTTTATATTTATATAAA
1 TTTATATTATATTTA-AT-AA
1292442 TTT-TATTATA-TTAATAA
1 TTTATATTATATTTAATAA
1292459 TTTATATTATAT
1 TTTATATTATAT
1292471 AAATTTTAAT
Statistics
Matches: 26, Mismatches: 1, Indels: 6
0.79 0.03 0.18
Matches are distributed among these distances:
17 5 0.19
18 9 0.35
19 3 0.12
20 6 0.23
21 3 0.12
ACGTcount: A:0.38, C:0.00, G:0.00, T:0.62
Consensus pattern (19 bp):
TTTATATTATATTTAATAA
Found at i:1292452 original size:33 final size:33
Alignment explanation
Indices: 1292413--1292499 Score: 106
Period size: 33 Copynumber: 2.6 Consensus size: 33
1292403 AATTATTATA
1292413 ATTATATTTTTATTTTATATTTATATAAATTTT
1 ATTATATTTTTATTTTATATTTATATAAATTTT
** *
1292446 ATTATATTAATAATTTATA-TTATATAAATTTT
1 ATTATATTTTTATTTTATATTTATATAAATTTT
*
1292478 AATAT-TTTTATATATTTATATT
1 ATTATATTTT-TAT-TTTATATT
1292500 ATTTTAAATT
Statistics
Matches: 44, Mismatches: 7, Indels: 5
0.79 0.12 0.09
Matches are distributed among these distances:
31 2 0.05
32 19 0.43
33 22 0.50
34 1 0.02
ACGTcount: A:0.38, C:0.00, G:0.00, T:0.62
Consensus pattern (33 bp):
ATTATATTTTTATTTTATATTTATATAAATTTT
Found at i:1292466 original size:18 final size:18
Alignment explanation
Indices: 1292421--1292506 Score: 58
Period size: 17 Copynumber: 4.8 Consensus size: 18
1292411 TAATTATATT
*
1292421 TTTATTTTATATTTATATAAA
1 TTTATATTATA-TTA-AT-AA
1292442 TTT-TATTATATTAATAA
1 TTTATATTATATTAATAA
*
1292459 TTTATATTATA-TAA-AT
1 TTTATATTATATTAATAA
1292475 TTTAATATT-T-TT-ATATA
1 TTT-ATATTATATTAATA-A
*
1292492 TTTATATTATTTTAA
1 TTTATATTATATTAA
1292507 ATTATTTTTT
Statistics
Matches: 54, Mismatches: 3, Indels: 18
0.72 0.04 0.24
Matches are distributed among these distances:
15 1 0.02
16 12 0.22
17 17 0.31
18 11 0.20
19 4 0.07
20 6 0.11
21 3 0.06
ACGTcount: A:0.38, C:0.00, G:0.00, T:0.62
Consensus pattern (18 bp):
TTTATATTATATTAATAA
Found at i:1292474 original size:32 final size:33
Alignment explanation
Indices: 1292426--1292501 Score: 109
Period size: 32 Copynumber: 2.3 Consensus size: 33
1292416 ATATTTTTAT
*
1292426 TTTATATTTATATAAATTTTATTATATTAATA-A
1 TTTATA-TTATATAAATTTTAATATATTAATATA
* *
1292459 TTTATATTATATAAATTTTAATATTTTTATATA
1 TTTATATTATATAAATTTTAATATATTAATATA
1292492 TTTATATTAT
1 TTTATATTAT
1292502 TTTAAATTAT
Statistics
Matches: 39, Mismatches: 3, Indels: 2
0.89 0.07 0.05
Matches are distributed among these distances:
32 22 0.56
33 17 0.44
ACGTcount: A:0.39, C:0.00, G:0.00, T:0.61
Consensus pattern (33 bp):
TTTATATTATATAAATTTTAATATATTAATATA
Found at i:1292543 original size:28 final size:28
Alignment explanation
Indices: 1292459--1292544 Score: 106
Period size: 28 Copynumber: 3.1 Consensus size: 28
1292449 ATATTAATAA
*
1292459 TTTATATTATA-TAAATTTTAA-TATTT
1 TTTATATTATATTATATTTTAATTATTT
*
1292485 TTATATATTTATATTAT-TTTAAATTATTT
1 TT-TATA-TTATATTATATTTTAATTATTT
*
1292514 TTTATATAATATTATATTTTAATTATTT
1 TTTATATTATATTATATTTTAATTATTT
1292542 TTT
1 TTT
1292545 TAATCATATA
Statistics
Matches: 51, Mismatches: 4, Indels: 8
0.81 0.06 0.13
Matches are distributed among these distances:
26 2 0.04
27 12 0.24
28 28 0.55
29 9 0.18
ACGTcount: A:0.35, C:0.00, G:0.00, T:0.65
Consensus pattern (28 bp):
TTTATATTATATTATATTTTAATTATTT
Found at i:1292553 original size:28 final size:28
Alignment explanation
Indices: 1292473--1292553 Score: 78
Period size: 28 Copynumber: 2.9 Consensus size: 28
1292463 TATTATATAA
* *
1292473 ATTTTAA-TATTTTTATATATTTATATTAT
1 ATTTTAATTATTTTT-T-TAATAATATTAT
*
1292502 -TTTAAATTA-TTTTTTATATAATATTAT
1 ATTTTAATTATTTTTTTA-ATAATATTAT
*
1292529 ATTTTAATTATTTTTTTAATCATAT
1 ATTTTAATTATTTTTTTAATAATAT
1292554 AATACGAGGG
Statistics
Matches: 43, Mismatches: 5, Indels: 9
0.75 0.09 0.16
Matches are distributed among these distances:
26 2 0.05
27 9 0.21
28 23 0.53
29 9 0.21
ACGTcount: A:0.35, C:0.01, G:0.00, T:0.64
Consensus pattern (28 bp):
ATTTTAATTATTTTTTTAATAATATTAT
Found at i:1292972 original size:10 final size:10
Alignment explanation
Indices: 1292950--1292981 Score: 55
Period size: 10 Copynumber: 3.1 Consensus size: 10
1292940 AATTATGAAT
1292950 TTTAAATTTTA
1 TTTAAA-TTTA
1292961 TTTAAATTTA
1 TTTAAATTTA
1292971 TTTAAATTTA
1 TTTAAATTTA
1292981 T
1 T
1292982 AAATAAATAG
Statistics
Matches: 21, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
10 15 0.71
11 6 0.29
ACGTcount: A:0.38, C:0.00, G:0.00, T:0.62
Consensus pattern (10 bp):
TTTAAATTTA
Found at i:1293048 original size:15 final size:15
Alignment explanation
Indices: 1293030--1293064 Score: 52
Period size: 15 Copynumber: 2.3 Consensus size: 15
1293020 TTTAATTTAT
*
1293030 TTTTTTGAAATATAA
1 TTTTTTAAAATATAA
*
1293045 TTTTTTAAAATTTAA
1 TTTTTTAAAATATAA
1293060 TTTTT
1 TTTTT
1293065 AATAGTTTAA
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
15 18 1.00
ACGTcount: A:0.34, C:0.00, G:0.03, T:0.63
Consensus pattern (15 bp):
TTTTTTAAAATATAA
Found at i:1293077 original size:35 final size:34
Alignment explanation
Indices: 1293038--1293128 Score: 101
Period size: 36 Copynumber: 2.6 Consensus size: 34
1293028 ATTTTTTTGA
* **
1293038 AATATAATTTTTTAAAATTTAATTTTTAATAGTTT
1 AATAT-ATTTTTTAAAATTTAATTTTGAATAACTT
* *
1293073 AATATTTTTTATTAAATTTTAAATTTTGAATAACTT
1 AATATATTTT-TTAAAATTT-AATTTTGAATAACTT
*
1293109 AATATATTTTTTAATATTTA
1 AATATATTTTTTAAAATTTA
1293129 CATTGTAATA
Statistics
Matches: 46, Mismatches: 8, Indels: 5
0.78 0.14 0.08
Matches are distributed among these distances:
34 5 0.11
35 20 0.43
36 21 0.46
ACGTcount: A:0.40, C:0.01, G:0.02, T:0.57
Consensus pattern (34 bp):
AATATATTTTTTAAAATTTAATTTTGAATAACTT
Found at i:1294153 original size:19 final size:19
Alignment explanation
Indices: 1294123--1294159 Score: 58
Period size: 19 Copynumber: 1.9 Consensus size: 19
1294113 ATTAATAAAG
1294123 TTTAACATTTTAATTAATTT
1 TTTAACATTTTAA-TAATTT
1294143 TTTAA-ATTTTAATAATT
1 TTTAACATTTTAATAATT
1294160 ATCGTTAACT
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
18 5 0.29
19 7 0.41
20 5 0.29
ACGTcount: A:0.38, C:0.03, G:0.00, T:0.59
Consensus pattern (19 bp):
TTTAACATTTTAATAATTT
Found at i:1294621 original size:2 final size:2
Alignment explanation
Indices: 1294614--1294648 Score: 61
Period size: 2 Copynumber: 17.5 Consensus size: 2
1294604 ATTAATTTGA
*
1294614 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT GT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1294649 GTCAGATGGA
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
2 31 1.00
ACGTcount: A:0.49, C:0.00, G:0.03, T:0.49
Consensus pattern (2 bp):
AT
Found at i:1295770 original size:12 final size:13
Alignment explanation
Indices: 1295742--1295775 Score: 52
Period size: 12 Copynumber: 2.7 Consensus size: 13
1295732 AATAATATAA
*
1295742 AATTTTATTTTTT
1 AATTTTATTTATT
1295755 AATTTT-TTTATT
1 AATTTTATTTATT
1295767 AATTTTATT
1 AATTTTATT
1295776 CACCTATAAA
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
12 11 0.58
13 8 0.42
ACGTcount: A:0.26, C:0.00, G:0.00, T:0.74
Consensus pattern (13 bp):
AATTTTATTTATT
Found at i:1296589 original size:16 final size:16
Alignment explanation
Indices: 1296565--1296616 Score: 52
Period size: 16 Copynumber: 3.2 Consensus size: 16
1296555 AGAAAGTACA
1296565 AATTATGTTGTAATTT
1 AATTATGTTGTAATTT
* * **
1296581 AATTTTGTTCTCAA-AA
1 AATTATGTTGT-AATTT
1296597 AATTATGTTGTAATTT
1 AATTATGTTGTAATTT
1296613 AATT
1 AATT
1296617 TTTATACTTT
Statistics
Matches: 26, Mismatches: 8, Indels: 4
0.68 0.21 0.11
Matches are distributed among these distances:
15 2 0.08
16 22 0.85
17 2 0.08
ACGTcount: A:0.35, C:0.04, G:0.10, T:0.52
Consensus pattern (16 bp):
AATTATGTTGTAATTT
Found at i:1303560 original size:16 final size:17
Alignment explanation
Indices: 1303524--1303558 Score: 54
Period size: 17 Copynumber: 2.1 Consensus size: 17
1303514 CATTAGGCCC
1303524 TTAAAAGTATAAATTGT
1 TTAAAAGTATAAATTGT
1303541 TTAAAGAGTA-AAATTGT
1 TTAAA-AGTATAAATTGT
1303558 T
1 T
1303559 AATAGGTTAA
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
17 13 0.76
18 4 0.24
ACGTcount: A:0.46, C:0.00, G:0.14, T:0.40
Consensus pattern (17 bp):
TTAAAAGTATAAATTGT
Found at i:1303605 original size:19 final size:20
Alignment explanation
Indices: 1303583--1303627 Score: 51
Period size: 19 Copynumber: 2.4 Consensus size: 20
1303573 TTAAACTAAA
*
1303583 AATAATTT-GAGTTAAAAAT
1 AATAATTTCCAGTTAAAAAT
*
1303602 AAT-ATTTCCATTTAAAAAT
1 AATAATTTCCAGTTAAAAAT
1303621 AA-AATTT
1 AATAATTT
1303628 ATTTTGCATC
Statistics
Matches: 22, Mismatches: 2, Indels: 4
0.79 0.07 0.14
Matches are distributed among these distances:
18 4 0.18
19 18 0.82
ACGTcount: A:0.51, C:0.04, G:0.04, T:0.40
Consensus pattern (20 bp):
AATAATTTCCAGTTAAAAAT
Found at i:1304331 original size:26 final size:26
Alignment explanation
Indices: 1304302--1304360 Score: 70
Period size: 26 Copynumber: 2.3 Consensus size: 26
1304292 TTACTTTTTC
1304302 TAATATTTATATT-AATATTATAATAA
1 TAATA-TTATATTAAATATTATAATAA
* *
1304328 TAATATTATTTTAAATATTATTAT-A
1 TAATATTATATTAAATATTATAATAA
1304353 -AATATTAT
1 TAATATTAT
1304361 CAAGTCCTCT
Statistics
Matches: 30, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
24 8 0.27
25 7 0.23
26 15 0.50
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (26 bp):
TAATATTATATTAAATATTATAATAA
Found at i:1304346 original size:12 final size:12
Alignment explanation
Indices: 1304315--1304360 Score: 56
Period size: 12 Copynumber: 3.7 Consensus size: 12
1304305 TATTTATATT
*
1304315 AATATTATAATAA
1 AATATTATTAT-A
*
1304328 TAATATTATTTTA
1 -AATATTATTATA
1304341 AATATTATTATA
1 AATATTATTATA
1304353 AATATTAT
1 AATATTAT
1304361 CAAGTCCTCT
Statistics
Matches: 29, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
12 19 0.66
13 1 0.03
14 9 0.31
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (12 bp):
AATATTATTATA
Found at i:1305240 original size:17 final size:19
Alignment explanation
Indices: 1305215--1305263 Score: 57
Period size: 20 Copynumber: 2.6 Consensus size: 19
1305205 GCCTTTTATA
*
1305215 ATCGTTACAA-GCA-ATGT
1 ATCGATACAATGCACATGT
*
1305232 ATCGATACAATTCATCATGT
1 ATCGATACAATGCA-CATGT
1305252 ATCGATACAATG
1 ATCGATACAATG
1305264 TATCGATACA
Statistics
Matches: 26, Mismatches: 3, Indels: 3
0.81 0.09 0.09
Matches are distributed among these distances:
17 9 0.35
18 2 0.08
20 15 0.58
ACGTcount: A:0.37, C:0.18, G:0.14, T:0.31
Consensus pattern (19 bp):
ATCGATACAATGCACATGT
Found at i:1305266 original size:13 final size:13
Alignment explanation
Indices: 1305226--1305278 Score: 55
Period size: 13 Copynumber: 4.5 Consensus size: 13
1305216 TCGTTACAAG
1305226 CAATGTATCGATA
1 CAATGTATCGATA
1305239 CAA--T-TC-AT-
1 CAATGTATCGATA
1305247 C-ATGTATCGATA
1 CAATGTATCGATA
1305259 CAATGTATCGATA
1 CAATGTATCGATA
*
1305272 CATTGTA
1 CAATGTA
1305279 CCATGTATCG
Statistics
Matches: 33, Mismatches: 1, Indels: 12
0.72 0.02 0.26
Matches are distributed among these distances:
7 1 0.03
8 1 0.03
9 3 0.09
10 4 0.12
11 3 0.09
12 1 0.03
13 20 0.61
ACGTcount: A:0.36, C:0.17, G:0.13, T:0.34
Consensus pattern (13 bp):
CAATGTATCGATA
Found at i:1305266 original size:33 final size:33
Alignment explanation
Indices: 1305226--1305294 Score: 104
Period size: 33 Copynumber: 2.1 Consensus size: 33
1305216 TCGTTACAAG
*
1305226 CAATGTATCGATACAATT-CATCATGTATCGATA
1 CAATGTATCGATAC-ATTGCACCATGTATCGATA
*
1305259 CAATGTATCGATACATTGTACCATGTATCGATA
1 CAATGTATCGATACATTGCACCATGTATCGATA
1305292 CAA
1 CAA
1305295 ATAGTGGTAG
Statistics
Matches: 33, Mismatches: 2, Indels: 2
0.89 0.05 0.05
Matches are distributed among these distances:
32 3 0.09
33 30 0.91
ACGTcount: A:0.36, C:0.19, G:0.13, T:0.32
Consensus pattern (33 bp):
CAATGTATCGATACATTGCACCATGTATCGATA
Found at i:1305367 original size:19 final size:19
Alignment explanation
Indices: 1305323--1305378 Score: 85
Period size: 19 Copynumber: 2.9 Consensus size: 19
1305313 CTGCCAATTT
**
1305323 CATGTATCGATACAATTGTC
1 CATGTATCGATACAA-TGAA
1305343 CATGTATCGATACAATGAA
1 CATGTATCGATACAATGAA
1305362 CATGTATCGATACAATG
1 CATGTATCGATACAATG
1305379 TATCGATACA
Statistics
Matches: 34, Mismatches: 2, Indels: 1
0.92 0.05 0.03
Matches are distributed among these distances:
19 19 0.56
20 15 0.44
ACGTcount: A:0.36, C:0.18, G:0.16, T:0.30
Consensus pattern (19 bp):
CATGTATCGATACAATGAA
Found at i:1305381 original size:13 final size:13
Alignment explanation
Indices: 1305363--1305389 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
1305353 TACAATGAAC
1305363 ATGTATCGATACA
1 ATGTATCGATACA
1305376 ATGTATCGATACA
1 ATGTATCGATACA
1305389 A
1 A
1305390 GACATAATGT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.41, C:0.15, G:0.15, T:0.30
Consensus pattern (13 bp):
ATGTATCGATACA
Found at i:1306009 original size:22 final size:22
Alignment explanation
Indices: 1305984--1306025 Score: 75
Period size: 22 Copynumber: 1.9 Consensus size: 22
1305974 AGATAAACAT
1305984 ATTTCTCCCCCTTTATCAAAGC
1 ATTTCTCCCCCTTTATCAAAGC
*
1306006 ATTTCTCCCCCTTTGTCAAA
1 ATTTCTCCCCCTTTATCAAA
1306026 TCTTAAAAAA
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
22 19 1.00
ACGTcount: A:0.21, C:0.36, G:0.05, T:0.38
Consensus pattern (22 bp):
ATTTCTCCCCCTTTATCAAAGC
Found at i:1307769 original size:20 final size:19
Alignment explanation
Indices: 1307731--1307770 Score: 53
Period size: 20 Copynumber: 2.0 Consensus size: 19
1307721 CCGTTTTTGT
*
1307731 TGATGATTTTGATGAAAAA
1 TGATGATTTTGAAGAAAAA
1307750 TGATGTATTTTGAAGTAAAAA
1 TGATG-ATTTTGAAG-AAAAA
1307771 ACAAGAAATT
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
19 5 0.28
20 8 0.44
21 5 0.28
ACGTcount: A:0.42, C:0.00, G:0.20, T:0.38
Consensus pattern (19 bp):
TGATGATTTTGAAGAAAAA
Found at i:1317012 original size:2 final size:2
Alignment explanation
Indices: 1317005--1317035 Score: 55
Period size: 2 Copynumber: 16.0 Consensus size: 2
1316995 TAAATAATAC
1317005 AT AT AT AT AT AT AT AT AT AT AT AT AT A- AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1317036 TTTCACATAT
Statistics
Matches: 28, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
1 1 0.04
2 27 0.96
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:1320681 original size:63 final size:63
Alignment explanation
Indices: 1320603--1320728 Score: 252
Period size: 63 Copynumber: 2.0 Consensus size: 63
1320593 TGTGATGGAG
1320603 GGCGTTCTATAAGAATGCATCAAGAAAACATGAAAATCCACTCAAGATGGTTAGCAAGGCTAC
1 GGCGTTCTATAAGAATGCATCAAGAAAACATGAAAATCCACTCAAGATGGTTAGCAAGGCTAC
1320666 GGCGTTCTATAAGAATGCATCAAGAAAACATGAAAATCCACTCAAGATGGTTAGCAAGGCTAC
1 GGCGTTCTATAAGAATGCATCAAGAAAACATGAAAATCCACTCAAGATGGTTAGCAAGGCTAC
1320729 ATGTTCAATG
Statistics
Matches: 63, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
63 63 1.00
ACGTcount: A:0.40, C:0.19, G:0.21, T:0.21
Consensus pattern (63 bp):
GGCGTTCTATAAGAATGCATCAAGAAAACATGAAAATCCACTCAAGATGGTTAGCAAGGCTAC
Found at i:1326153 original size:25 final size:26
Alignment explanation
Indices: 1326101--1326153 Score: 74
Period size: 26 Copynumber: 2.1 Consensus size: 26
1326091 TTTTATAAAA
*
1326101 AATTAAAAATTTATATAAATTTTGAT
1 AATTAAAAATTTATATAAATTTTAAT
1326127 AATTAAAAATTT-TA-AAATTATTAAT
1 AATTAAAAATTTATATAAATT-TTAAT
1326152 AA
1 AA
1326154 ATATTATAAT
Statistics
Matches: 25, Mismatches: 1, Indels: 3
0.86 0.03 0.10
Matches are distributed among these distances:
24 5 0.20
25 8 0.32
26 12 0.48
ACGTcount: A:0.55, C:0.00, G:0.02, T:0.43
Consensus pattern (26 bp):
AATTAAAAATTTATATAAATTTTAAT
Found at i:1326345 original size:22 final size:22
Alignment explanation
Indices: 1326317--1326363 Score: 67
Period size: 22 Copynumber: 2.1 Consensus size: 22
1326307 CATAAAAATT
* * *
1326317 TTATAAGTTAATAAATATATTA
1 TTATAAGGTAATAAAAATAATA
1326339 TTATAAGGTAATAAAAATAATA
1 TTATAAGGTAATAAAAATAATA
1326361 TTA
1 TTA
1326364 CATAAAATAT
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
22 22 1.00
ACGTcount: A:0.53, C:0.00, G:0.06, T:0.40
Consensus pattern (22 bp):
TTATAAGGTAATAAAAATAATA
Found at i:1327532 original size:2 final size:2
Alignment explanation
Indices: 1327520--1327548 Score: 51
Period size: 2 Copynumber: 15.0 Consensus size: 2
1327510 ATATAATGTA
1327520 AT AT A- AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1327549 GTAAAAGTCG
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
1 1 0.04
2 25 0.96
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:1330016 original size:21 final size:21
Alignment explanation
Indices: 1329990--1330029 Score: 64
Period size: 21 Copynumber: 1.9 Consensus size: 21
1329980 AAAAAAAAAT
1329990 TATTTAAAT-TTAATTATAAAG
1 TATTTAAATATTAA-TATAAAG
1330011 TATTTAAATATTAATATAA
1 TATTTAAATATTAATATAA
1330030 GGAATAATTT
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
21 14 0.78
22 4 0.22
ACGTcount: A:0.50, C:0.00, G:0.03, T:0.47
Consensus pattern (21 bp):
TATTTAAATATTAATATAAAG
Found at i:1330050 original size:10 final size:9
Alignment explanation
Indices: 1330036--1330061 Score: 52
Period size: 9 Copynumber: 2.9 Consensus size: 9
1330026 ATAAGGAATA
1330036 ATTTTTAAT
1 ATTTTTAAT
1330045 ATTTTTAAT
1 ATTTTTAAT
1330054 ATTTTTAA
1 ATTTTTAA
1330062 AAAATAAAAA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 17 1.00
ACGTcount: A:0.35, C:0.00, G:0.00, T:0.65
Consensus pattern (9 bp):
ATTTTTAAT
Found at i:1335016 original size:15 final size:15
Alignment explanation
Indices: 1334996--1335040 Score: 54
Period size: 15 Copynumber: 3.0 Consensus size: 15
1334986 ATTCCGCCAA
1334996 ATCCACCACAAAATC
1 ATCCACCACAAAATC
** *
1335011 ATCCACCACCTAATT
1 ATCCACCACAAAATC
*
1335026 ACCCACCACAAAATC
1 ATCCACCACAAAATC
1335041 GTCGATACAC
Statistics
Matches: 23, Mismatches: 7, Indels: 0
0.77 0.23 0.00
Matches are distributed among these distances:
15 23 1.00
ACGTcount: A:0.42, C:0.42, G:0.00, T:0.16
Consensus pattern (15 bp):
ATCCACCACAAAATC
Found at i:1335651 original size:43 final size:43
Alignment explanation
Indices: 1335587--1335673 Score: 131
Period size: 43 Copynumber: 2.0 Consensus size: 43
1335577 AAGTATAGAA
*
1335587 AAGTCACATTTTTACCTAGATGTATCAGTACATTTTTCGATAT
1 AAGTCACATTTTTACCTAGATGTATCAGTACATTTTTCAATAT
* *
1335630 AAGTCATATTTTTA-CTCAGATGTATCGGTACATTTTTCAATAT
1 AAGTCACATTTTTACCT-AGATGTATCAGTACATTTTTCAATAT
1335673 A
1 A
1335674 TCGATACATG
Statistics
Matches: 40, Mismatches: 3, Indels: 2
0.89 0.07 0.04
Matches are distributed among these distances:
42 2 0.05
43 38 0.95
ACGTcount: A:0.31, C:0.15, G:0.11, T:0.43
Consensus pattern (43 bp):
AAGTCACATTTTTACCTAGATGTATCAGTACATTTTTCAATAT
Found at i:1335681 original size:20 final size:20
Alignment explanation
Indices: 1335649--1335773 Score: 97
Period size: 20 Copynumber: 5.7 Consensus size: 20
1335639 TTTTACTCAG
*
1335649 ATGTATCGGTACATTTTTCA
1 ATGTATCGATACATTTTTCA
* * * *
1335669 ATATATCGATACATGTATGA
1 ATGTATCGATACATTTTTCA
*
1335689 ATGTATCGATACATTCTTCA
1 ATGTATCGATACATTTTTCA
1335709 ATGTATCGATACATTCTATCTCTTTTCCCAA
1 ATGTATCGAT--A--C-A--T-TTTT--C-A
1335740 ATGTATCGATACATTTTTCA
1 ATGTATCGATACATTTTTCA
1335760 ATGTATCGATACAT
1 ATGTATCGATACAT
1335774 CTAGTTAAAA
Statistics
Matches: 83, Mismatches: 11, Indels: 22
0.72 0.09 0.19
Matches are distributed among these distances:
20 55 0.66
21 1 0.01
22 1 0.01
23 4 0.05
24 2 0.02
25 1 0.01
26 1 0.01
27 2 0.02
28 3 0.04
29 1 0.01
30 1 0.01
31 11 0.13
ACGTcount: A:0.30, C:0.18, G:0.11, T:0.41
Consensus pattern (20 bp):
ATGTATCGATACATTTTTCA
Found at i:1337917 original size:16 final size:16
Alignment explanation
Indices: 1337896--1337927 Score: 64
Period size: 16 Copynumber: 2.0 Consensus size: 16
1337886 TTTTCTTTAC
1337896 AAAAAATATCAAAAAT
1 AAAAAATATCAAAAAT
1337912 AAAAAATATCAAAAAT
1 AAAAAATATCAAAAAT
1337928 TTTATTTATC
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.75, C:0.06, G:0.00, T:0.19
Consensus pattern (16 bp):
AAAAAATATCAAAAAT
Found at i:1344629 original size:21 final size:20
Alignment explanation
Indices: 1344611--1344662 Score: 70
Period size: 21 Copynumber: 2.5 Consensus size: 20
1344601 CTTAAAAAGC
1344611 AAAACAAAAAAAAGCAAAAAA
1 AAAACAAAAAAAAG-AAAAAA
*
1344632 AAAACAAAAGAAAGAAAAATA
1 AAAACAAAAAAAAGAAAAA-A
1344653 AAAA-AAAAAA
1 AAAACAAAAAA
1344663 CAACACAAAA
Statistics
Matches: 28, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
20 10 0.36
21 18 0.64
ACGTcount: A:0.87, C:0.06, G:0.06, T:0.02
Consensus pattern (20 bp):
AAAACAAAAAAAAGAAAAAA
Found at i:1344633 original size:14 final size:15
Alignment explanation
Indices: 1344604--1344635 Score: 57
Period size: 15 Copynumber: 2.2 Consensus size: 15
1344594 CGTCTTTCTT
1344604 AAAAAGCAAAACAAA
1 AAAAAGCAAAACAAA
1344619 AAAAAGCAAAA-AAA
1 AAAAAGCAAAACAAA
1344633 AAA
1 AAA
1344636 CAAAAGAAAG
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 6 0.35
15 11 0.65
ACGTcount: A:0.84, C:0.09, G:0.06, T:0.00
Consensus pattern (15 bp):
AAAAAGCAAAACAAA
Found at i:1344649 original size:27 final size:26
Alignment explanation
Indices: 1344604--1344672 Score: 84
Period size: 27 Copynumber: 2.6 Consensus size: 26
1344594 CGTCTTTCTT
* *
1344604 AAAAAGCAAAACAAAAAAAAGCAAAA
1 AAAAAACAAAACAAAAAAAAGAAAAA
* *
1344630 AAAAAACAAAAGAAAGAAAAATAAAAA
1 AAAAAACAAAACAAA-AAAAAGAAAAA
*
1344657 AAAAAACAACACAAAA
1 AAAAAACAAAACAAAA
1344673 GGGAGGGATT
Statistics
Matches: 36, Mismatches: 6, Indels: 2
0.82 0.14 0.05
Matches are distributed among these distances:
26 14 0.39
27 22 0.61
ACGTcount: A:0.83, C:0.10, G:0.06, T:0.01
Consensus pattern (26 bp):
AAAAAACAAAACAAAAAAAAGAAAAA
Found at i:1346006 original size:28 final size:28
Alignment explanation
Indices: 1345966--1346331 Score: 427
Period size: 28 Copynumber: 13.0 Consensus size: 28
1345956 AATATGACAC
1345966 CCTTTCAAAGCCCACAAGTCAGTGGCAT
1 CCTTTCAAAGCCCACAAGTCAGTGGCAT
*
1345994 CCTTTCAGAGCCCACAAGTCAGTGGCAT
1 CCTTTCAAAGCCCACAAGTCAGTGGCAT
* * *
1346022 CTTTTCAGAGCCCACAAGTCAGTGACA-
1 CCTTTCAAAGCCCACAAGTCAGTGGCAT
*
1346049 CCTTTTCAAAGCCCACAAGTTAGTGGCA-
1 CC-TTTCAAAGCCCACAAGTCAGTGGCAT
* *
1346077 CTCTTTCAAAGCCTACAAGTCAGTAGCAT
1 C-CTTTCAAAGCCCACAAGTCAGTGGCAT
* *
1346106 CCTTTCAAAGCCCACAAGTCAATGACAT
1 CCTTTCAAAGCCCACAAGTCAGTGGCAT
* * **
1346134 CTTTTTAAAGCCCATGAGTCAGTGGCAT
1 CCTTTCAAAGCCCACAAGTCAGTGGCAT
* *
1346162 CTTTTTTCAAAGCCCACGAGTCAGTGGCAT
1 C--CTTTCAAAGCCCACAAGTCAGTGGCAT
*
1346192 CCTTTCAAAGCCCATAAGTCAGTGGCAT
1 CCTTTCAAAGCCCACAAGTCAGTGGCAT
* * *
1346220 CCTTTTAAAGCCCACAAGTTAGTGGCAACC
1 CCTTTCAAAGCCCACAAGTCAGTGGC-A-T
1346250 CCTTTCAAAGCCCACAAG-CTAGTGGCA-
1 CCTTTCAAAGCCCACAAGTC-AGTGGCAT
1346277 CCTTTCAAAGCCCACAAGTCAGTGGCA-
1 CCTTTCAAAGCCCACAAGTCAGTGGCAT
* * *
1346304 CATTTTCAAAGACCGCAAGTCAGTGGCA
1 C-CTTTCAAAGCCCACAAGTCAGTGGCA
1346332 ACCTCTTCTA
Statistics
Matches: 294, Mismatches: 34, Indels: 20
0.84 0.10 0.06
Matches are distributed among these distances:
27 27 0.09
28 214 0.73
29 4 0.01
30 49 0.17
ACGTcount: A:0.29, C:0.29, G:0.18, T:0.24
Consensus pattern (28 bp):
CCTTTCAAAGCCCACAAGTCAGTGGCAT
Found at i:1346382 original size:31 final size:32
Alignment explanation
Indices: 1346322--1346382 Score: 88
Period size: 31 Copynumber: 1.9 Consensus size: 32
1346312 AAGACCGCAA
* * *
1346322 GTCAGTGGCAACCTCTTCTAAATCTCACACTG
1 GTCAATGGCAACCTCTTCTAAAGCCCACACTG
1346354 GTCAATGGCAACC-CTTCTAAAGCCCACAC
1 GTCAATGGCAACCTCTTCTAAAGCCCACAC
1346383 AAGTTGGTGG
Statistics
Matches: 26, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
31 14 0.54
32 12 0.46
ACGTcount: A:0.28, C:0.34, G:0.15, T:0.23
Consensus pattern (32 bp):
GTCAATGGCAACCTCTTCTAAAGCCCACACTG
Found at i:1351346 original size:14 final size:14
Alignment explanation
Indices: 1351296--1351346 Score: 50
Period size: 14 Copynumber: 3.7 Consensus size: 14
1351286 ATATGTCATG
* *
1351296 AAAAATTATATTAT
1 AAAAATTAAATTGT
*
1351310 AAAAATTAATTTG-
1 AAAAATTAAATTGT
* *
1351323 AAGAACTAAATTGT
1 AAAAATTAAATTGT
1351337 AAAAATTAAA
1 AAAAATTAAA
1351347 AATTATATAC
Statistics
Matches: 28, Mismatches: 8, Indels: 2
0.74 0.21 0.05
Matches are distributed among these distances:
13 10 0.36
14 18 0.64
ACGTcount: A:0.59, C:0.02, G:0.06, T:0.33
Consensus pattern (14 bp):
AAAAATTAAATTGT
Found at i:1353636 original size:8 final size:9
Alignment explanation
Indices: 1353625--1353746 Score: 50
Period size: 8 Copynumber: 14.1 Consensus size: 9
1353615 ATTCGTTTAT
1353625 TATTATA-A
1 TATTATATA
1353633 TATT-TATA
1 TATTATATA
*
1353641 TATTTTTATA
1 TA-TTATATA
1353651 TATTATAATTA
1 TATTAT-A-TA
*
1353662 TAATTAAAT-
1 T-ATTATATA
* *
1353671 TTTTATAAA
1 TATTATATA
1353680 T-TTATATA
1 TATTATATA
*
1353688 AATTATAATA
1 TATTAT-ATA
1353698 TATTAT-TA
1 TATTATATA
1353706 -ATT-T-T-
1 TATTATATA
1353711 TATTATATA
1 TATTATATA
* *
1353720 AATTTTGATA
1 TATTAT-ATA
1353730 TATT-TATA
1 TATTATATA
1353738 TATT-TATA
1 TATTATATA
1353746 T
1 T
1353747 TATGTTCGTA
Statistics
Matches: 89, Mismatches: 11, Indels: 28
0.70 0.09 0.22
Matches are distributed among these distances:
6 5 0.06
7 6 0.07
8 32 0.36
9 16 0.18
10 22 0.25
11 4 0.04
12 4 0.04
ACGTcount: A:0.42, C:0.00, G:0.01, T:0.57
Consensus pattern (9 bp):
TATTATATA
Found at i:1353676 original size:37 final size:37
Alignment explanation
Indices: 1353621--1353718 Score: 117
Period size: 37 Copynumber: 2.6 Consensus size: 37
1353611 GGTTATTCGT
* * *
1353621 TTATTATTATAATATTTATATATTTTTATATATTATAA
1 TTATTATTA-AATTTTTATATATTTATATAAATTATAA
* *
1353659 TTATAATTAAATTTTTATAAATTTATATAAATTATAA
1 TTATTATTAAATTTTTATATATTTATATAAATTATAA
1353696 TATATTATT-AATTTTTATTATAT
1 T-TATTATTAAATTTTTA-TATAT
1353719 AAATTTTGAT
Statistics
Matches: 51, Mismatches: 7, Indels: 4
0.82 0.11 0.06
Matches are distributed among these distances:
37 33 0.65
38 18 0.35
ACGTcount: A:0.42, C:0.00, G:0.00, T:0.58
Consensus pattern (37 bp):
TTATTATTAAATTTTTATATATTTATATAAATTATAA
Found at i:1353736 original size:20 final size:18
Alignment explanation
Indices: 1353622--1353739 Score: 54
Period size: 20 Copynumber: 6.5 Consensus size: 18
1353612 GTTATTCGTT
1353622 TATTAT-TATAATATTTATA
1 TATTATATA-AAT-TTTATA
* * *
1353641 TATT-TTTATATATTATA
1 TATTATATAAATTTTATA
1353658 -ATTATAATTAAATTTTTATA
1 TATTAT-A-TAAA-TTTTATA
* *
1353678 AATTTATATAAATTATAATA
1 TA-TTATATAAATT-TTATA
1353698 TATTAT-T-AA-TTT-T-
1 TATTATATAAATTTTATA
1353711 TATTATATAAATTTTGATA
1 TATTATATAAATTTT-ATA
1353730 TATTTATATA
1 TA-TTATATA
1353740 TTTATATTAT
Statistics
Matches: 76, Mismatches: 8, Indels: 29
0.67 0.07 0.26
Matches are distributed among these distances:
13 6 0.08
14 2 0.03
15 3 0.04
16 7 0.09
17 8 0.11
18 5 0.07
19 17 0.22
20 22 0.29
21 2 0.03
22 4 0.05
ACGTcount: A:0.42, C:0.00, G:0.01, T:0.57
Consensus pattern (18 bp):
TATTATATAAATTTTATA
Found at i:1353882 original size:3 final size:3
Alignment explanation
Indices: 1353874--1353919 Score: 83
Period size: 3 Copynumber: 15.0 Consensus size: 3
1353864 ATATTCATAG
1353874 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TTAA TAA TAA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA -TAA TAA TAA
1353920 AAATGGCATT
Statistics
Matches: 42, Mismatches: 0, Indels: 2
0.95 0.00 0.05
Matches are distributed among these distances:
3 39 0.93
4 3 0.07
ACGTcount: A:0.65, C:0.00, G:0.00, T:0.35
Consensus pattern (3 bp):
TAA
Found at i:1354300 original size:15 final size:15
Alignment explanation
Indices: 1354282--1354315 Score: 68
Period size: 15 Copynumber: 2.3 Consensus size: 15
1354272 GCAAAATTGA
1354282 AATTAAATAACTTTT
1 AATTAAATAACTTTT
1354297 AATTAAATAACTTTT
1 AATTAAATAACTTTT
1354312 AATT
1 AATT
1354316 TACATAAAAT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 19 1.00
ACGTcount: A:0.47, C:0.06, G:0.00, T:0.47
Consensus pattern (15 bp):
AATTAAATAACTTTT
Found at i:1355200 original size:21 final size:21
Alignment explanation
Indices: 1355162--1355201 Score: 53
Period size: 21 Copynumber: 1.9 Consensus size: 21
1355152 TTAAAATATA
*
1355162 ATTTTTTTAGAAAATGCAAAG
1 ATTTTTTTACAAAATGCAAAG
* *
1355183 ATTTTTTTTCAAATTGCAA
1 ATTTTTTTACAAAATGCAA
1355202 TATTGCATAA
Statistics
Matches: 16, Mismatches: 3, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
21 16 1.00
ACGTcount: A:0.38, C:0.07, G:0.10, T:0.45
Consensus pattern (21 bp):
ATTTTTTTACAAAATGCAAAG
Found at i:1355253 original size:24 final size:23
Alignment explanation
Indices: 1355221--1355268 Score: 78
Period size: 24 Copynumber: 2.0 Consensus size: 23
1355211 AATTTTAAAT
1355221 TATTAATTATTAAAATATTAAAAA
1 TATTAATTATTAAAATA-TAAAAA
*
1355245 TATTTATTATTAAAATATAAAAA
1 TATTAATTATTAAAATATAAAAA
1355268 T
1 T
1355269 TAGGGTTTAG
Statistics
Matches: 23, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
23 7 0.30
24 16 0.70
ACGTcount: A:0.56, C:0.00, G:0.00, T:0.44
Consensus pattern (23 bp):
TATTAATTATTAAAATATAAAAA
Found at i:1355411 original size:21 final size:21
Alignment explanation
Indices: 1355359--1355411 Score: 58
Period size: 21 Copynumber: 2.6 Consensus size: 21
1355349 AATATTAAAA
1355359 ATATTAATATT-TCAAATATT
1 ATATTAATATTATCAAATATT
*
1355379 ACTATT-CTATTAT-ATAATATT
1 A-TATTAATATTATCA-AATATT
1355400 ATATTAATATTA
1 ATATTAATATTA
1355412 AATACTTAAA
Statistics
Matches: 27, Mismatches: 2, Indels: 7
0.75 0.06 0.19
Matches are distributed among these distances:
20 10 0.37
21 17 0.63
ACGTcount: A:0.43, C:0.06, G:0.00, T:0.51
Consensus pattern (21 bp):
ATATTAATATTATCAAATATT
Found at i:1355537 original size:15 final size:16
Alignment explanation
Indices: 1355514--1355546 Score: 50
Period size: 15 Copynumber: 2.1 Consensus size: 16
1355504 TTATACTTGT
*
1355514 AAAATATTTA-TATTA
1 AAAACATTTACTATTA
1355529 AAAACATTTACTATTA
1 AAAACATTTACTATTA
1355545 AA
1 AA
1355547 TATTTATAAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
15 9 0.56
16 7 0.44
ACGTcount: A:0.55, C:0.06, G:0.00, T:0.39
Consensus pattern (16 bp):
AAAACATTTACTATTA
Found at i:1359159 original size:18 final size:17
Alignment explanation
Indices: 1359135--1359178 Score: 63
Period size: 17 Copynumber: 2.5 Consensus size: 17
1359125 CTTTCAAAAA
1359135 AAAATAATATTGTTGTATT
1 AAAATAATATT-TT-TATT
1359154 -AAATAATATTTTTATT
1 AAAATAATATTTTTATT
1359170 AAAATAATA
1 AAAATAATA
1359179 AAAAAATCAA
Statistics
Matches: 24, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
16 4 0.17
17 10 0.42
18 10 0.42
ACGTcount: A:0.50, C:0.00, G:0.05, T:0.45
Consensus pattern (17 bp):
AAAATAATATTTTTATT
Found at i:1360277 original size:22 final size:20
Alignment explanation
Indices: 1360252--1360313 Score: 61
Period size: 22 Copynumber: 2.9 Consensus size: 20
1360242 AATAGAAATA
1360252 ATAAATATTAAAATATATTTAT
1 ATAAATATT-AAATAT-TTTAT
* *
1360274 ATAAATATTTTAATATTTTCAA
1 ATAAATA-TTAAATATTTT-AT
*
1360296 ATAAAAATTAAATATTTT
1 ATAAATATTAAATATTTT
1360314 TATTGATATA
Statistics
Matches: 34, Mismatches: 4, Indels: 5
0.79 0.09 0.12
Matches are distributed among these distances:
21 13 0.38
22 19 0.56
23 2 0.06
ACGTcount: A:0.52, C:0.02, G:0.00, T:0.47
Consensus pattern (20 bp):
ATAAATATTAAATATTTTAT
Found at i:1363363 original size:48 final size:48
Alignment explanation
Indices: 1363292--1363408 Score: 128
Period size: 48 Copynumber: 2.4 Consensus size: 48
1363282 AAGTTATTTT
** * * * *
1363292 CAAAATAATTCATGTTTAGAATAATTCATATTCAAAACAGA-TCTTGTT
1 CAAAATAATTTTTATTTAAAATAATTCATATTCAAAACA-ATTCATGTC
* * *
1363340 CAACATAATTTTTATTTAAAATAATTCATATTTAAAATAATTCATGTC
1 CAAAATAATTTTTATTTAAAATAATTCATATTCAAAACAATTCATGTC
*
1363388 CAAAATAATTTTTATTCAAAA
1 CAAAATAATTTTTATTTAAAA
1363409 CAACACATTT
Statistics
Matches: 57, Mismatches: 11, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
47 1 0.02
48 56 0.98
ACGTcount: A:0.44, C:0.11, G:0.04, T:0.40
Consensus pattern (48 bp):
CAAAATAATTTTTATTTAAAATAATTCATATTCAAAACAATTCATGTC
Found at i:1363407 original size:16 final size:16
Alignment explanation
Indices: 1363290--1363408 Score: 87
Period size: 16 Copynumber: 7.4 Consensus size: 16
1363280 TAAAGTTATT
*
1363290 TTCAAAATAATTCATG
1 TTCAAAATAATTCATA
* *
1363306 TTTAGAATAATTCATA
1 TTCAAAATAATTCATA
* * *
1363322 TTCAAAACAGA-TCTTG
1 TTCAAAATA-ATTCATA
* **
1363338 TTCAACATAATTTTTA
1 TTCAAAATAATTCATA
*
1363354 TTTAAAATAATTCATA
1 TTCAAAATAATTCATA
* *
1363370 TTTAAAATAATTCATG
1 TTCAAAATAATTCATA
* **
1363386 TCCAAAATAATTTTTA
1 TTCAAAATAATTCATA
1363402 TTCAAAA
1 TTCAAAA
1363409 CAACACATTT
Statistics
Matches: 78, Mismatches: 23, Indels: 4
0.74 0.22 0.04
Matches are distributed among these distances:
15 1 0.01
16 76 0.97
17 1 0.01
ACGTcount: A:0.44, C:0.11, G:0.04, T:0.41
Consensus pattern (16 bp):
TTCAAAATAATTCATA
Found at i:1364091 original size:2 final size:2
Alignment explanation
Indices: 1364080--1364120 Score: 66
Period size: 2 Copynumber: 21.0 Consensus size: 2
1364070 TGAGGTATGT
*
1364080 TA TA -A TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA AA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1364121 ATAAAAGCAA
Statistics
Matches: 36, Mismatches: 2, Indels: 2
0.90 0.05 0.05
Matches are distributed among these distances:
1 1 0.03
2 35 0.97
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (2 bp):
TA
Found at i:1366112 original size:15 final size:17
Alignment explanation
Indices: 1366082--1366117 Score: 58
Period size: 15 Copynumber: 2.2 Consensus size: 17
1366072 TGGCTCGATA
1366082 TAAAATATTATTTTATT
1 TAAAATATTATTTTATT
1366099 TAAAATA-T-TTTTATT
1 TAAAATATTATTTTATT
1366114 TAAA
1 TAAA
1366118 TTATATATTA
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
15 11 0.58
16 1 0.05
17 7 0.37
ACGTcount: A:0.44, C:0.00, G:0.00, T:0.56
Consensus pattern (17 bp):
TAAAATATTATTTTATT
Found at i:1366135 original size:15 final size:15
Alignment explanation
Indices: 1366082--1366148 Score: 52
Period size: 14 Copynumber: 4.6 Consensus size: 15
1366072 TGGCTCGATA
*
1366082 TAAAATATTATTTTATT
1 TAAAATATTA-TATA-T
*
1366099 TAAAATATT-TTTAT
1 TAAAATATTATATAT
*
1366113 T-TAA-ATTATATAT
1 TAAAATATTATATAT
1366126 TAAAATATTA-ATAT
1 TAAAATATTATATAT
*
1366140 AAAAATATT
1 TAAAATATT
1366149 TTAATATTTT
Statistics
Matches: 43, Mismatches: 4, Indels: 9
0.77 0.07 0.16
Matches are distributed among these distances:
12 3 0.07
13 7 0.16
14 16 0.37
15 8 0.19
17 9 0.21
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (15 bp):
TAAAATATTATATAT
Found at i:1366145 original size:27 final size:29
Alignment explanation
Indices: 1366079--1366145 Score: 66
Period size: 27 Copynumber: 2.3 Consensus size: 29
1366069 ACTTGGCTCG
* *
1366079 ATATAAAATATTATTTTATTTAAAATATTT
1 ATATAAAA-ATTATTATATTTAAAATATTA
* **
1366109 TTATTTAAATTA-TATA-TTAAAATATTA
1 ATATAAAAATTATTATATTTAAAATATTA
1366136 ATATAAAAAT
1 ATATAAAAAT
1366146 ATTTTAATAT
Statistics
Matches: 29, Mismatches: 8, Indels: 3
0.73 0.20 0.08
Matches are distributed among these distances:
27 17 0.59
28 3 0.10
29 4 0.14
30 5 0.17
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (29 bp):
ATATAAAAATTATTATATTTAAAATATTA
Found at i:1366691 original size:35 final size:35
Alignment explanation
Indices: 1366652--1366722 Score: 90
Period size: 35 Copynumber: 2.0 Consensus size: 35
1366642 AGGAATTAAT
1366652 TTATAAAATTGATAT-ATATATATATAAGTTATATA
1 TTATAAAATTGAT-TCATATATATATAAGTTATATA
* * * *
1366687 TTATAAAATTTATTCATATATGTGTAATTTATATA
1 TTATAAAATTGATTCATATATATATAAGTTATATA
1366722 T
1 T
1366723 ATTTATAAAA
Statistics
Matches: 31, Mismatches: 4, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
34 1 0.03
35 30 0.97
ACGTcount: A:0.44, C:0.01, G:0.06, T:0.49
Consensus pattern (35 bp):
TTATAAAATTGATTCATATATATATAAGTTATATA
Found at i:1366734 original size:19 final size:19
Alignment explanation
Indices: 1366650--1366734 Score: 63
Period size: 19 Copynumber: 4.6 Consensus size: 19
1366640 AAAGGAATTA
*
1366650 ATTTATAAAATTGATATAT
1 ATTTATAAAATTTATATAT
* * *
1366669 ATATATATAA-GT-TATAT
1 ATTTATAAAATTTATATAT
1366686 A-TTATAAAATTTATTCATAT
1 ATTTATAAAATTTA-T-ATAT
* *
1366706 ATGTGT--AATTTATATAT
1 ATTTATAAAATTTATATAT
1366723 ATTTATAAAATT
1 ATTTATAAAATT
1366735 ATAAAAAAAA
Statistics
Matches: 48, Mismatches: 11, Indels: 14
0.66 0.15 0.19
Matches are distributed among these distances:
16 6 0.12
17 15 0.31
18 1 0.02
19 19 0.40
20 5 0.10
21 2 0.04
ACGTcount: A:0.45, C:0.01, G:0.05, T:0.49
Consensus pattern (19 bp):
ATTTATAAAATTTATATAT
Found at i:1366848 original size:19 final size:20
Alignment explanation
Indices: 1366812--1366855 Score: 56
Period size: 19 Copynumber: 2.2 Consensus size: 20
1366802 TATAATTAAA
1366812 AAATTAAAATTTTCATAATT
1 AAATTAAAATTTTCATAATT
*
1366832 TAATT-AAATATTT-ATAATT
1 AAATTAAAAT-TTTCATAATT
1366851 AAATT
1 AAATT
1366856 TTTTATAACT
Statistics
Matches: 21, Mismatches: 2, Indels: 3
0.81 0.08 0.12
Matches are distributed among these distances:
19 14 0.67
20 7 0.33
ACGTcount: A:0.50, C:0.02, G:0.00, T:0.48
Consensus pattern (20 bp):
AAATTAAAATTTTCATAATT
Found at i:1367829 original size:7 final size:8
Alignment explanation
Indices: 1367812--1367836 Score: 50
Period size: 8 Copynumber: 3.1 Consensus size: 8
1367802 AATTTTTTAT
1367812 AAAATTAA
1 AAAATTAA
1367820 AAAATTAA
1 AAAATTAA
1367828 AAAATTAA
1 AAAATTAA
1367836 A
1 A
1367837 TTTTTATTGA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 17 1.00
ACGTcount: A:0.76, C:0.00, G:0.00, T:0.24
Consensus pattern (8 bp):
AAAATTAA
Found at i:1367907 original size:20 final size:19
Alignment explanation
Indices: 1367863--1367911 Score: 62
Period size: 20 Copynumber: 2.5 Consensus size: 19
1367853 TTAATTTTTT
*
1367863 ATTAATTTTTATTAATTAA
1 ATTAATTTTTATCAATTAA
* *
1367882 ACTAATTTTATATCAATTTA
1 ATTAATTTT-TATCAATTAA
1367902 ATTAATTTTT
1 ATTAATTTTT
1367912 TATTTTAATT
Statistics
Matches: 25, Mismatches: 4, Indels: 2
0.81 0.13 0.06
Matches are distributed among these distances:
19 9 0.36
20 16 0.64
ACGTcount: A:0.39, C:0.04, G:0.00, T:0.57
Consensus pattern (19 bp):
ATTAATTTTTATCAATTAA
Found at i:1368467 original size:32 final size:33
Alignment explanation
Indices: 1368424--1368492 Score: 88
Period size: 32 Copynumber: 2.1 Consensus size: 33
1368414 AAAAATTATA
*
1368424 TATTTATATAAATTTTAATT-TATTAATAAATTT
1 TATTTATATAAAATTT-ATTATATTAATAAATTT
* *
1368457 TATTT-TATAAAATTTATTATATTTATATATTT
1 TATTTATATAAAATTTATTATATTAATAAATTT
1368489 TATT
1 TATT
1368493 ATTTTTATTT
Statistics
Matches: 32, Mismatches: 3, Indels: 3
0.84 0.08 0.08
Matches are distributed among these distances:
31 3 0.09
32 24 0.75
33 5 0.16
ACGTcount: A:0.39, C:0.00, G:0.00, T:0.61
Consensus pattern (33 bp):
TATTTATATAAAATTTATTATATTAATAAATTT
Found at i:1368480 original size:9 final size:9
Alignment explanation
Indices: 1368468--1368510 Score: 52
Period size: 9 Copynumber: 4.8 Consensus size: 9
1368458 ATTTTATAAA
1368468 ATTTATTAT
1 ATTTATTAT
1368477 ATTTA-TAT
1 ATTTATTAT
1368485 ATTTTATTAT
1 A-TTTATTAT
* *
1368495 TTTTATTTT
1 ATTTATTAT
1368504 ATTTATT
1 ATTTATT
1368511 TATAAAATAA
Statistics
Matches: 29, Mismatches: 3, Indels: 4
0.81 0.08 0.11
Matches are distributed among these distances:
8 4 0.14
9 22 0.76
10 3 0.10
ACGTcount: A:0.28, C:0.00, G:0.00, T:0.72
Consensus pattern (9 bp):
ATTTATTAT
Found at i:1368481 original size:18 final size:18
Alignment explanation
Indices: 1368408--1368518 Score: 68
Period size: 18 Copynumber: 6.7 Consensus size: 18
1368398 TGTTATAATA
1368408 ATATTTA-AAAA-TTA-T
1 ATATTTATAAAATTTATT
1368423 ATATTTATATAAA-TT-TT
1 ATATTTATA-AAATTTATT
*
1368440 A-ATTTATTAATAAATT-TT
1 ATATTTA-TAA-AATTTATT
1368458 AT-TTTATAAAATTTATT
1 ATATTTATAAAATTTATT
* *
1368475 ATATTTATATATTTTATT
1 ATATTTATAAAATTTATT
*
1368493 AT-TTT-T--ATTTTATT
1 ATATTTATAAAATTTATT
1368507 -TATTTATAAAAT
1 ATATTTATAAAAT
1368519 AACGTGCTTT
Statistics
Matches: 79, Mismatches: 4, Indels: 24
0.74 0.04 0.22
Matches are distributed among these distances:
13 1 0.01
14 11 0.14
15 8 0.10
16 12 0.15
17 23 0.29
18 24 0.30
ACGTcount: A:0.41, C:0.00, G:0.00, T:0.59
Consensus pattern (18 bp):
ATATTTATAAAATTTATT
Found at i:1368487 original size:27 final size:25
Alignment explanation
Indices: 1368457--1368518 Score: 67
Period size: 27 Copynumber: 2.5 Consensus size: 25
1368447 TAATAAATTT
1368457 TATTTTATAAAATTTATTATATTTATA
1 TATTTTATAAAATTT-TTAT-TTTATA
* *
1368484 TATTTTAT--TATTTTTATTTTATT
1 TATTTTATAAAATTTTTATTTTATA
1368507 TA-TTTATAAAAT
1 TATTTTATAAAAT
1368519 AACGTGCTTT
Statistics
Matches: 30, Mismatches: 3, Indels: 7
0.75 0.08 0.17
Matches are distributed among these distances:
22 5 0.17
23 7 0.23
24 6 0.20
25 4 0.13
27 8 0.27
ACGTcount: A:0.35, C:0.00, G:0.00, T:0.65
Consensus pattern (25 bp):
TATTTTATAAAATTTTTATTTTATA
Found at i:1368503 original size:14 final size:15
Alignment explanation
Indices: 1368469--1368511 Score: 52
Period size: 14 Copynumber: 2.7 Consensus size: 15
1368459 TTTTATAAAA
1368469 TTTATTATATTTATATAT
1 TTTATT-TATTT-T-TAT
1368487 TTTA-TTATTTTTAT
1 TTTATTTATTTTTAT
1368501 TTTATTTATTT
1 TTTATTTATTT
1368512 ATAAAATAAC
Statistics
Matches: 24, Mismatches: 0, Indels: 5
0.83 0.00 0.17
Matches are distributed among these distances:
14 7 0.29
15 7 0.29
16 5 0.21
17 1 0.04
18 4 0.17
ACGTcount: A:0.26, C:0.00, G:0.00, T:0.74
Consensus pattern (15 bp):
TTTATTTATTTTTAT
Found at i:1369056 original size:25 final size:24
Alignment explanation
Indices: 1369028--1369095 Score: 68
Period size: 25 Copynumber: 2.9 Consensus size: 24
1369018 AACTACCAAC
1369028 TTTAAAAATATATTTATTAAATTTT
1 TTTAAAAATATATTTATTAAA-TTT
* * * *
1369053 TTTACATATTTATCTATT-AATTT
1 TTTAAAAATATATTTATTAAATTT
*
1369076 TTT-AAAATATATTTTTTAAA
1 TTTAAAAATATATTTATTAAA
1369096 GATAATATTA
Statistics
Matches: 33, Mismatches: 9, Indels: 4
0.72 0.20 0.09
Matches are distributed among these distances:
22 9 0.27
23 8 0.24
24 2 0.06
25 14 0.42
ACGTcount: A:0.40, C:0.03, G:0.00, T:0.57
Consensus pattern (24 bp):
TTTAAAAATATATTTATTAAATTT
Found at i:1369549 original size:19 final size:20
Alignment explanation
Indices: 1369514--1369555 Score: 68
Period size: 20 Copynumber: 2.1 Consensus size: 20
1369504 TATAGTTAAA
1369514 TTTAAATAAAAATATATTAT
1 TTTAAATAAAAATATATTAT
*
1369534 TTTAAATAATAA-ATATTAT
1 TTTAAATAAAAATATATTAT
1369553 TTT
1 TTT
1369556 GATCTAACTT
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
19 10 0.48
20 11 0.52
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (20 bp):
TTTAAATAAAAATATATTAT
Found at i:1369945 original size:38 final size:36
Alignment explanation
Indices: 1369870--1369947 Score: 86
Period size: 36 Copynumber: 2.1 Consensus size: 36
1369860 TATTGTGATT
***
1369870 TTTTTTAAAATTAAAAAATAAATTTTTTAATAATTA
1 TTTTTTAAAATTAAAAAATAAATTTCAGAATAATTA
*
1369906 TTTTTTAAAATTAAAAACATTAAATATTCAGAAT-TTTA
1 TTTTTTAAAATTAAAAA-A-TAAAT-TTCAGAATAATTA
1369944 TTTT
1 TTTT
1369948 ATATTTATAA
Statistics
Matches: 35, Mismatches: 4, Indels: 4
0.81 0.09 0.09
Matches are distributed among these distances:
36 17 0.49
37 1 0.03
38 12 0.34
39 5 0.14
ACGTcount: A:0.46, C:0.03, G:0.01, T:0.50
Consensus pattern (36 bp):
TTTTTTAAAATTAAAAAATAAATTTCAGAATAATTA
Found at i:1370605 original size:20 final size:21
Alignment explanation
Indices: 1370570--1370609 Score: 64
Period size: 20 Copynumber: 2.0 Consensus size: 21
1370560 ATCTGATTTT
*
1370570 AAATAAAATTTTATTAAAATA
1 AAATAAAATTTAATTAAAATA
1370591 AAATAAAA-TTAATTAAAAT
1 AAATAAAATTTAATTAAAAT
1370610 TATTAATTAA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
20 10 0.56
21 8 0.44
ACGTcount: A:0.65, C:0.00, G:0.00, T:0.35
Consensus pattern (21 bp):
AAATAAAATTTAATTAAAATA
Found at i:1370695 original size:30 final size:29
Alignment explanation
Indices: 1370646--1370710 Score: 89
Period size: 30 Copynumber: 2.2 Consensus size: 29
1370636 ATTTAAATTT
1370646 AATTTTAAAATTATATAAATAA-AAAATA
1 AATTTTAAAATTATATAAATAATAAAATA
1370674 ATATTTTAATAA-TATTATAAATAATAAAATA
1 A-ATTTTAA-AATTA-TATAAATAATAAAATA
1370705 AATTTT
1 AATTTT
1370711 TAGATTTATT
Statistics
Matches: 33, Mismatches: 0, Indels: 6
0.85 0.00 0.15
Matches are distributed among these distances:
28 1 0.03
29 9 0.27
30 16 0.48
31 7 0.21
ACGTcount: A:0.58, C:0.00, G:0.00, T:0.42
Consensus pattern (29 bp):
AATTTTAAAATTATATAAATAATAAAATA
Found at i:1371582 original size:15 final size:15
Alignment explanation
Indices: 1371540--1371582 Score: 50
Period size: 17 Copynumber: 2.7 Consensus size: 15
1371530 ATTATCTGAT
*
1371540 AAAAATATTAATTTT
1 AAAAATATTAATTTC
*
1371555 AATAATTTATTAATTTC
1 AA-AA-ATATTAATTTC
1371572 AAAAATATTAA
1 AAAAATATTAA
1371583 ATAATTTAAT
Statistics
Matches: 23, Mismatches: 3, Indels: 4
0.77 0.10 0.13
Matches are distributed among these distances:
15 8 0.35
16 4 0.17
17 11 0.48
ACGTcount: A:0.53, C:0.02, G:0.00, T:0.44
Consensus pattern (15 bp):
AAAAATATTAATTTC
Found at i:1371692 original size:25 final size:26
Alignment explanation
Indices: 1371659--1371719 Score: 79
Period size: 26 Copynumber: 2.4 Consensus size: 26
1371649 AATTATAATT
* *
1371659 TTAAATTTAAATATAT-AATTTATTA
1 TTAATTTTAAATATATAAATTTATCA
* *
1371684 TTAATTTTAATTTTATAAATTTATCA
1 TTAATTTTAAATATATAAATTTATCA
1371710 TTAATTTTAA
1 TTAATTTTAA
1371720 TCGAACTATA
Statistics
Matches: 31, Mismatches: 4, Indels: 1
0.86 0.11 0.03
Matches are distributed among these distances:
25 13 0.42
26 18 0.58
ACGTcount: A:0.43, C:0.02, G:0.00, T:0.56
Consensus pattern (26 bp):
TTAATTTTAAATATATAAATTTATCA
Found at i:1371712 original size:26 final size:27
Alignment explanation
Indices: 1371670--1371720 Score: 86
Period size: 26 Copynumber: 1.9 Consensus size: 27
1371660 TAAATTTAAA
*
1371670 TATATAATTTATTATTAATTTTAATTT
1 TATATAATTTATCATTAATTTTAATTT
1371697 TATA-AATTTATCATTAATTTTAAT
1 TATATAATTTATCATTAATTTTAAT
1371721 CGAACTATAT
Statistics
Matches: 23, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
26 19 0.83
27 4 0.17
ACGTcount: A:0.39, C:0.02, G:0.00, T:0.59
Consensus pattern (27 bp):
TATATAATTTATCATTAATTTTAATTT
Found at i:1372645 original size:21 final size:21
Alignment explanation
Indices: 1372606--1372650 Score: 54
Period size: 21 Copynumber: 2.1 Consensus size: 21
1372596 GTTAAAAGAA
* * *
1372606 TTATTTTATTAATTGATATTT
1 TTATTTTATTAAATAATATAT
*
1372627 TTATTTTTTTAAATAATATAT
1 TTATTTTATTAAATAATATAT
1372648 TTA
1 TTA
1372651 AAGGGTTAAT
Statistics
Matches: 20, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
21 20 1.00
ACGTcount: A:0.33, C:0.00, G:0.02, T:0.64
Consensus pattern (21 bp):
TTATTTTATTAAATAATATAT
Found at i:1373318 original size:7 final size:7
Alignment explanation
Indices: 1373303--1373349 Score: 58
Period size: 7 Copynumber: 6.4 Consensus size: 7
1373293 CAAATAACAT
1373303 TATATAA
1 TATATAA
*
1373310 TACATAA
1 TATATAA
1373317 TATATAA
1 TATATAA
1373324 TATATAAA
1 TATAT-AA
*
1373332 TATATTAT
1 TATA-TAA
1373340 TATATAA
1 TATATAA
1373347 TAT
1 TAT
1373350 TATAGAAAAA
Statistics
Matches: 34, Mismatches: 4, Indels: 4
0.81 0.10 0.10
Matches are distributed among these distances:
7 22 0.65
8 11 0.32
9 1 0.03
ACGTcount: A:0.53, C:0.02, G:0.00, T:0.45
Consensus pattern (7 bp):
TATATAA
Found at i:1373342 original size:37 final size:37
Alignment explanation
Indices: 1373276--1373348 Score: 96
Period size: 37 Copynumber: 2.0 Consensus size: 37
1373266 CACTCATATT
*
1373276 ATAATATTATATTATATCAAATAACATTATATAATAC
1 ATAATATTATAATATATCAAATAACATTATATAATAC
*
1373313 ATAATA-TATAATATAT-AAATATATTATTATATAATA
1 ATAATATTATAATATATCAAATA-A-CATTATATAATA
1373349 TTATAGAAAA
Statistics
Matches: 32, Mismatches: 2, Indels: 4
0.84 0.05 0.11
Matches are distributed among these distances:
35 5 0.16
36 10 0.31
37 17 0.53
ACGTcount: A:0.53, C:0.04, G:0.00, T:0.42
Consensus pattern (37 bp):
ATAATATTATAATATATCAAATAACATTATATAATAC
Found at i:1373380 original size:13 final size:13
Alignment explanation
Indices: 1373313--1373381 Score: 61
Period size: 13 Copynumber: 5.2 Consensus size: 13
1373303 TATATAATAC
*
1373313 ATAATATATAATAT
1 ATAA-ATATTATAT
1373327 ATAAATA-TATTATT
1 ATAAATATTA-TA-T
*
1373341 ATATAATATTATAG
1 ATA-AATATTATAT
*
1373355 AAAAATATT-TAT
1 ATAAATATTATAT
1373367 ATAAATATTATAT
1 ATAAATATTATAT
1373380 AT
1 AT
1373382 TATAATTATA
Statistics
Matches: 45, Mismatches: 5, Indels: 11
0.74 0.08 0.18
Matches are distributed among these distances:
12 11 0.24
13 16 0.36
14 10 0.22
15 6 0.13
16 2 0.04
ACGTcount: A:0.54, C:0.00, G:0.01, T:0.45
Consensus pattern (13 bp):
ATAAATATTATAT
Found at i:1373969 original size:15 final size:15
Alignment explanation
Indices: 1373933--1373975 Score: 52
Period size: 15 Copynumber: 2.9 Consensus size: 15
1373923 TTATTATTTA
*
1373933 TTTTATTTTAAA-AT
1 TTTTATTATAAATAT
*
1373947 TGTTATTATAAATAT
1 TTTTATTATAAATAT
*
1373962 TTTTATTATTAATA
1 TTTTATTATAAATA
1373976 ATATTTATTT
Statistics
Matches: 24, Mismatches: 4, Indels: 1
0.83 0.14 0.03
Matches are distributed among these distances:
14 10 0.42
15 14 0.58
ACGTcount: A:0.37, C:0.00, G:0.02, T:0.60
Consensus pattern (15 bp):
TTTTATTATAAATAT
Found at i:1375246 original size:2 final size:2
Alignment explanation
Indices: 1375234--1375279 Score: 65
Period size: 2 Copynumber: 23.0 Consensus size: 2
1375224 CCTACTAAAG
* **
1375234 AT AT AT CT AT AT AT AT AT AT AT GC AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1375276 AT AT
1 AT AT
1375280 TCATACCATA
Statistics
Matches: 38, Mismatches: 6, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
2 38 1.00
ACGTcount: A:0.46, C:0.04, G:0.02, T:0.48
Consensus pattern (2 bp):
AT
Found at i:1375931 original size:19 final size:18
Alignment explanation
Indices: 1375907--1375976 Score: 78
Period size: 19 Copynumber: 4.1 Consensus size: 18
1375897 AATTCAACAA
1375907 TTTGTATCGATACATAAGT
1 TTTGTATCGATACATAA-T
1375926 TTTGTATCGATAC--AA-
1 TTTGTATCGATACATAAT
1375941 --TGTATCGATACATAAAT
1 TTTGTATCGATACAT-AAT
*
1375958 ATTGTATCGATACATAAT
1 TTTGTATCGATACATAAT
1375976 T
1 T
1375977 AGCTACTGCC
Statistics
Matches: 44, Mismatches: 1, Indels: 13
0.76 0.02 0.22
Matches are distributed among these distances:
13 11 0.25
16 2 0.05
17 2 0.05
18 3 0.07
19 26 0.59
ACGTcount: A:0.36, C:0.11, G:0.13, T:0.40
Consensus pattern (18 bp):
TTTGTATCGATACATAAT
Found at i:1375946 original size:13 final size:13
Alignment explanation
Indices: 1375928--1375952 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
1375918 ACATAAGTTT
1375928 TGTATCGATACAA
1 TGTATCGATACAA
1375941 TGTATCGATACA
1 TGTATCGATACA
1375953 TAAATATTGT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.36, C:0.16, G:0.16, T:0.32
Consensus pattern (13 bp):
TGTATCGATACAA
Found at i:1375950 original size:32 final size:32
Alignment explanation
Indices: 1375909--1375971 Score: 108
Period size: 32 Copynumber: 2.0 Consensus size: 32
1375899 TTCAACAATT
* *
1375909 TGTATCGATACATAAGTTTTGTATCGATACAA
1 TGTATCGATACATAAATATTGTATCGATACAA
1375941 TGTATCGATACATAAATATTGTATCGATACA
1 TGTATCGATACATAAATATTGTATCGATACA
1375972 TAATTAGCTA
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
32 29 1.00
ACGTcount: A:0.37, C:0.13, G:0.14, T:0.37
Consensus pattern (32 bp):
TGTATCGATACATAAATATTGTATCGATACAA
Found at i:1376033 original size:13 final size:13
Alignment explanation
Indices: 1376015--1376041 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
1376005 ATTTTTCTGT
1376015 GTATCGATACATG
1 GTATCGATACATG
1376028 GTATCGATACATG
1 GTATCGATACATG
1376041 G
1 G
1376042 ATCTTTGTAT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.30, C:0.15, G:0.26, T:0.30
Consensus pattern (13 bp):
GTATCGATACATG
Found at i:1376037 original size:33 final size:33
Alignment explanation
Indices: 1375995--1376059 Score: 94
Period size: 33 Copynumber: 2.0 Consensus size: 33
1375985 CCAAGGAAAT
***
1375995 GTATCGATACATTTTTCTGTGTATCGATACATG
1 GTATCGATACATGGATCTGTGTATCGATACATG
*
1376028 GTATCGATACATGGATCTTTGTATCGATACAT
1 GTATCGATACATGGATCTGTGTATCGATACAT
1376060 TTGGAAATTT
Statistics
Matches: 28, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
33 28 1.00
ACGTcount: A:0.26, C:0.15, G:0.18, T:0.40
Consensus pattern (33 bp):
GTATCGATACATGGATCTGTGTATCGATACATG
Found at i:1378462 original size:51 final size:52
Alignment explanation
Indices: 1378402--1378518 Score: 140
Period size: 51 Copynumber: 2.3 Consensus size: 52
1378392 AATTCTCCGC
* *
1378402 AATCGGGGATA-TCCCTACTCCGATTTCATTT-TCAAAACA-CTAATTTTCTAT
1 AATCGGGGATACT-CCAACTCCGATTTCATTTCT-AAAACATCAAATTTTCTAT
*
1378453 AATCGGGGATACTCCAACTCCGATTTTATTTCTAAAACATCAAATTTTC---
1 AATCGGGGATACTCCAACTCCGATTTCATTTCTAAAACATCAAATTTTCTAT
1378502 -ATCGGGGATACTCCAAC
1 AATCGGGGATACTCCAAC
1378519 CCCGTTAATC
Statistics
Matches: 60, Mismatches: 3, Indels: 9
0.83 0.04 0.12
Matches are distributed among these distances:
48 17 0.28
51 33 0.55
52 10 0.17
ACGTcount: A:0.31, C:0.24, G:0.12, T:0.33
Consensus pattern (52 bp):
AATCGGGGATACTCCAACTCCGATTTCATTTCTAAAACATCAAATTTTCTAT
Found at i:1378572 original size:28 final size:27
Alignment explanation
Indices: 1378500--1378575 Score: 100
Period size: 27 Copynumber: 2.8 Consensus size: 27
1378490 CATCAAATTT
1378500 TCATCGGGGATACTCCAACCCCGTTAA
1 TCATCGGGGATACTCCAACCCCGTTAA
*
1378527 TCATCGGGGATACTCCAACCCC-TTTA
1 TCATCGGGGATACTCCAACCCCGTTAA
**
1378553 TTTTCGAGGGGATACTCCAACCC
1 TCATC--GGGGATACTCCAACCC
1378576 TCGGCTTTAT
Statistics
Matches: 44, Mismatches: 3, Indels: 3
0.88 0.06 0.06
Matches are distributed among these distances:
26 6 0.14
27 22 0.50
28 16 0.36
ACGTcount: A:0.24, C:0.33, G:0.18, T:0.25
Consensus pattern (27 bp):
TCATCGGGGATACTCCAACCCCGTTAA
Found at i:1378682 original size:80 final size:80
Alignment explanation
Indices: 1378529--1378713 Score: 210
Period size: 80 Copynumber: 2.3 Consensus size: 80
1378519 CCCGTTAATC
* * * * **
1378529 ATCGGGGATACTCCAACCCCTTTATTTTCGAGGGGATACTCCAACCCTCGGCTTTATTTCTGAAA
1 ATCGGGGATACTCCAACCCCGTTATCTCCGAGGGGATACTCCAACCCTCGACTTTATTTCAAAAA
* ** *
1378594 TATTAATTTCTCATA
66 CACCAATTTCTCACA
* *
1378609 ATCGGGGATACTCCAACCCCGTTATCTCCGAGGGGATACTCCAACTC-CGATTTTATTTCCAAAA
1 ATCGGGGATACTCCAACCCCGTTATCTCCGAGGGGATACTCCAACCCTCGACTTTATTT-CAAAA
*
1378673 ACACCAATTTTTCACA
65 ACACCAATTTCTCACA
* * *
1378689 ATTGAGGATACTCCAACCTCGTTAT
1 ATCGGGGATACTCCAACCCCGTTAT
1378714 TTCATCGGTG
Statistics
Matches: 88, Mismatches: 16, Indels: 2
0.83 0.15 0.02
Matches are distributed among these distances:
79 9 0.10
80 79 0.90
ACGTcount: A:0.27, C:0.27, G:0.15, T:0.31
Consensus pattern (80 bp):
ATCGGGGATACTCCAACCCCGTTATCTCCGAGGGGATACTCCAACCCTCGACTTTATTTCAAAAA
CACCAATTTCTCACA
Found at i:1378804 original size:186 final size:184
Alignment explanation
Indices: 1378457--1378857 Score: 522
Period size: 186 Copynumber: 2.2 Consensus size: 184
1378447 TTCTATAATC
* * *
1378457 GGGGATACTCCAACTCCGATTTTATTT-CTAAAACATCAAATTTTCATCGGGGATACTCCAACCC
1 GGGGATACTCCAACTCCGATTTTATTTCCAAAAACACCAAATTTTCATCGAGGATACTCCAACCC
* ** * *
1378521 CGTTAATCATCGGGGATACTCCAACCCCTTTATTTTCGAGGGGATACTCCAACCCTCGGCTTTAT
66 CGTTAATCATCGGGGATACTCCAACCCCGTTACCTCCGAGGGGATACTCCAACCCTCAGCTTTAT
* ** *
1378586 TTCTGAAATATTAATTTCTCATAATCGGGGATACTCCAACCCCGTTATCTCCGA
131 TCCCAAAATATTAATTTCTCATAATCGGGGATACTCCAACCCCGTTACCTCCGA
* *
1378640 GGGGATACTCCAACTCCGATTTTATTTCCAAAAACACCAATTTTTCACAATTGAGGATACTCCAA
1 GGGGATACTCCAACTCCGATTTTATTTCCAAAAACACCAAATTTT--C-ATCGAGGATACTCCAA
* * *
1378705 CCTCGTTATTTCATCGGTGATACTCCAACCCCGTTACCTCCGA-GGGATACTCCAACCC-CAGCT
63 CCCCGTTA-ATCATCGGGGATACTCCAACCCCGTTACCTCCGAGGGGATACTCCAACCCTCAGCT
* * *
1378768 TTATTCCCAAAATATTGATTTCTCATAATTGGGGATACTCCAACCCCGTTACCTCTGA
127 TTATTCCCAAAATATTAATTTCTCATAATCGGGGATACTCCAACCCCGTTACCTCCGA
* ** *
1378826 -GGGATACTCCAACCCCGGCTTTATTCCCAAAA
1 GGGGATACTCCAACTCCGATTTTATTTCCAAAA
1378858 TATTGATTTC
Statistics
Matches: 189, Mismatches: 24, Indels: 8
0.86 0.11 0.04
Matches are distributed among these distances:
183 27 0.14
184 14 0.07
185 28 0.15
186 56 0.30
187 36 0.19
188 28 0.15
ACGTcount: A:0.27, C:0.29, G:0.14, T:0.30
Consensus pattern (184 bp):
GGGGATACTCCAACTCCGATTTTATTTCCAAAAACACCAAATTTTCATCGAGGATACTCCAACCC
CGTTAATCATCGGGGATACTCCAACCCCGTTACCTCCGAGGGGATACTCCAACCCTCAGCTTTAT
TCCCAAAATATTAATTTCTCATAATCGGGGATACTCCAACCCCGTTACCTCCGA
Found at i:1378852 original size:78 final size:78
Alignment explanation
Indices: 1378723--1378916 Score: 352
Period size: 78 Copynumber: 2.5 Consensus size: 78
1378713 TTTCATCGGT
1378723 GATACTCCAACCCCGTTACCTCCGAGGGATACTCCAACCCCAGCTTTATTCCCAAAATATTGATT
1 GATACTCCAACCCCGTTACCTCCGAGGGATACTCCAACCCCAGCTTTATTCCCAAAATATTGATT
1378788 TCTCATAATTGGG
66 TCTCATAATTGGG
* *
1378801 GATACTCCAACCCCGTTACCTCTGAGGGATACTCCAACCCCGGCTTTATTCCCAAAATATTGATT
1 GATACTCCAACCCCGTTACCTCCGAGGGATACTCCAACCCCAGCTTTATTCCCAAAATATTGATT
1378866 TCTCATAATTGGG
66 TCTCATAATTGGG
*
1378879 GATACTCCAACCCTGTTACCTCCGAGGGGATACTCCAA
1 GATACTCCAACCCCGTTACCTCCGA-GGGATACTCCAA
1378917 TTTCGATTTT
Statistics
Matches: 111, Mismatches: 4, Indels: 1
0.96 0.03 0.01
Matches are distributed among these distances:
78 99 0.89
79 12 0.11
ACGTcount: A:0.26, C:0.31, G:0.15, T:0.27
Consensus pattern (78 bp):
GATACTCCAACCCCGTTACCTCCGAGGGATACTCCAACCCCAGCTTTATTCCCAAAATATTGATT
TCTCATAATTGGG
Found at i:1385393 original size:8 final size:8
Alignment explanation
Indices: 1385355--1385406 Score: 54
Period size: 8 Copynumber: 6.6 Consensus size: 8
1385345 AAAAATTCAT
1385355 AAATATTA
1 AAATATTA
*
1385363 ATAT-TTA
1 AAATATTA
1385370 AAAT-TTA
1 AAATATTA
1385377 AATATATTA
1 AA-ATATTA
1385386 AAATATTA
1 AAATATTA
* *
1385394 TAATTTTA
1 AAATATTA
1385402 AAATA
1 AAATA
1385407 ATTATAAAAT
Statistics
Matches: 36, Mismatches: 6, Indels: 4
0.78 0.13 0.09
Matches are distributed among these distances:
7 11 0.31
8 20 0.56
9 5 0.14
ACGTcount: A:0.56, C:0.00, G:0.00, T:0.44
Consensus pattern (8 bp):
AAATATTA
Found at i:1385867 original size:15 final size:15
Alignment explanation
Indices: 1385847--1385876 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
1385837 TAAAAATATA
*
1385847 ATTTATTTTATTTTT
1 ATTTATTTAATTTTT
1385862 ATTTATTTAATTTTT
1 ATTTATTTAATTTTT
1385877 TAAATAATTA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.23, C:0.00, G:0.00, T:0.77
Consensus pattern (15 bp):
ATTTATTTAATTTTT
Done.