Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Scaffold1003
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 123701
ACGTcount: A:0.31, C:0.19, G:0.18, T:0.33
Found at i:558 original size:11 final size:11
Alignment explanation
Indices: 542--578 Score: 56
Period size: 11 Copynumber: 3.3 Consensus size: 11
532 TTCCAAACAC
542 AAAAAAAAAGA
1 AAAAAAAAAGA
*
553 AAAAAAAAGGA
1 AAAAAAAAAGA
564 AAAAAAAACAGA
1 AAAAAAAA-AGA
576 AAA
1 AAA
579 TCTCGATAAG
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
11 18 0.78
12 5 0.22
ACGTcount: A:0.86, C:0.03, G:0.11, T:0.00
Consensus pattern (11 bp):
AAAAAAAAAGA
Found at i:636 original size:1 final size:1
Alignment explanation
Indices: 632--667 Score: 54
Period size: 1 Copynumber: 36.0 Consensus size: 1
622 AAAAAGATGC
* *
632 AAAAAAAAAAACAAAAAAAACAAAAAAAAAAAAAAA
1 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
668 CCCTTTTCAC
Statistics
Matches: 31, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
1 31 1.00
ACGTcount: A:0.94, C:0.06, G:0.00, T:0.00
Consensus pattern (1 bp):
A
Found at i:1736 original size:35 final size:34
Alignment explanation
Indices: 1604--2787 Score: 1263
Period size: 35 Copynumber: 34.8 Consensus size: 34
1594 CATTTAAAGT
* * *
1604 CCACAACTCCGTGGCACT-TTTTTCATCTTAAGT
1 CCACAACTCCGTGGCACTCTTTTTCCTTTTAAGC
*
1637 CCACAACTCCGTGGCAC-CTTTTTCTTTTTAAAGC
1 CCACAACTCCGTGGCACTCTTTTTCCTTTT-AAGC
1671 CCACAACTCCGTGGCAC-CTTTTT-CTGTTTAAAGC
1 CCACAACTCCGTGGCACTCTTTTTCCT-TTT-AAGC
* * *
1705 CCACAACTCTGTGGCACACTTTTTCTTTTTAAAGC
1 CCACAACTCCGTGGCACTCTTTTTCCTTTT-AAGC
1740 CCACAACTCCGTGGCACTCTTTTTTCCCTTTTCAAGC
1 CCACAACTCCGTGGCACTC-TTTTT-CCTTTT-AAGC
*
1777 CCACAACTCCGTGGCAC-CTTTTTCTTTTTAAAGC
1 CCACAACTCCGTGGCACTCTTTTTCCTTTT-AAGC
1811 CCACAACTCCGT-GCACTCTTTTTCCCTTTTTAAGC
1 CCACAACTCCGTGGCACTCTTTTT-CC-TTTTAAGC
*
1846 CCACAACTCCGTGGCAC-CTTCTTTTCCTTTTAAGT
1 CCACAACTCCGTGGCACTC-T-TTTTCCTTTTAAGC
* *
1881 CCACGACTCCGTGGCACTC-TTTTCC-TTTAAGT
1 CCACAACTCCGTGGCACTCTTTTTCCTTTTAAGC
*
1913 CCACGACTCCGTGGCACTC-TTTTCC-TTTAAGC
1 CCACAACTCCGTGGCACTCTTTTTCCTTTTAAGC
* *
1945 CCACAACTACGTGGCACTC-TTTTCCTTCTAAGC
1 CCACAACTCCGTGGCACTCTTTTTCCTTTTAAGC
* *
1978 CCACAACTTCGTGGCACTCTTTTTCCTTCTAAGC
1 CCACAACTCCGTGGCACTCTTTTTCCTTTTAAGC
*
2012 CCACAACTCCGTGGCAC-CTTCTTTTCCTTCTAAGC
1 CCACAACTCCGTGGCACTC-T-TTTTCCTTTTAAGC
* *
2047 CCACAACTTCGTGGCACTCTTTCTT-CTTTCAAAGC
1 CCACAACTCCGTGGCACTCTTT-TTCCTTT-TAAGC
*
2082 CCACAACTCCGTGGCCAC-CTTTTTCTTTTTAAAGC
1 CCACAACTCCGTGG-CACTCTTTTTCCTTTT-AAGC
2117 CCACAACTCCGTGGCACTCTTTTTCCCTTTTCAAAGC
1 CCACAACTCCGTGGCACTCTTTTT-CCTTTT--AAGC
2154 CCACAACTCCGTGGCAC-CTTTTT-CTTTTAAAGC
1 CCACAACTCCGTGGCACTCTTTTTCCTTTT-AAGC
2187 CCACAACTCCGTGGCACTCTTTTTCCCTTTTTAAAGC
1 CCACAACTCCGTGGCACTCTTTTT-CC-TTTT-AAGC
2224 CC-CAACTCCGTGGCACCTTCTTTTTCCTTTTAAGC
1 CCACAACTCCGTGGCA-C-TCTTTTTCCTTTTAAGC
*
2259 CCACAACTCCGTGGCA--C-----CCTTTTAAGT
1 CCACAACTCCGTGGCACTCTTTTTCCTTTTAAGC
* *
2286 CCACGACTCCGTGGCACTC-TTTTCCTTTTAAGT
1 CCACAACTCCGTGGCACTCTTTTTCCTTTTAAGC
* *
2319 CCACGACTCCGTGGCACTC-TTTTCC-TTAAAGC
1 CCACAACTCCGTGGCACTCTTTTTCCTTTTAAGC
* *
2351 CCACAACTACGTGGCACTC--TTTCCTTCTAAGC
1 CCACAACTCCGTGGCACTCTTTTTCCTTTTAAGC
* *
2383 CCACAACTTCGTGGCACTCTTTTTCCTTCTAAGC
1 CCACAACTCCGTGGCACTCTTTTTCCTTTTAAGC
*
2417 CCACAACTCCGTGGCAC-CTTCTTTTCCTTCTAAGC
1 CCACAACTCCGTGGCACTC-T-TTTTCCTTTTAAGC
*
2452 CCACAACTTCGTGGCACTCTTTCTT-CTTTTCAAAG-
1 CCACAACTCCGTGGCACTCTTT-TTCCTTTT--AAGC
2487 CCACAACTCCGTGGCAC-CTTTTT-CTGTTTAAAGC
1 CCACAACTCCGTGGCACTCTTTTTCCT-TTT-AAGC
2521 CCACAACTCCGTGGCACTCTTTTTCCCTTTTAAGC
1 CCACAACTCCGTGGCACTCTTTTT-CCTTTTAAGC
2556 CCACAACTCCGTGGCAC-CTTTTT-CTTTTAAAGC
1 CCACAACTCCGTGGCACTCTTTTTCCTTTT-AAGC
*
2589 CCACAACTCCGTGGCACTCTTTTTCCCTTTTAAGT
1 CCACAACTCCGTGGCACTCTTTTT-CCTTTTAAGC
* *
2624 CCACAACTCCGTGGCA-TCTTTCTCTCTTCCTAAAGCC
1 CCACAACTCCGTGGCACTCTTTTTC-CTT--TTAAG-C
* * * **
2661 CACACAAGTCGGTGGCAAC-C---TT-CGTCAAAGC
1 C-CACAACTCCGTGGC-ACTCTTTTTCCTTTTAAGC
*
2692 CCACAACTCTGTGGCAC-CTTTTT-CTTTTAAAGC
1 CCACAACTCCGTGGCACTCTTTTTCCTTTT-AAGC
*
2725 CCACAACTCCGTGGCACTCTTTTTCCCTTTTAAGT
1 CCACAACTCCGTGGCACTCTTTTT-CCTTTTAAGC
2760 CCACAACTCCGTGGCA-TCTTTTTTCCTT
1 CCACAACTCCGTGGCACTC-TTTTTCCTT
2788 CCCAAAGCCC
Statistics
Matches: 1021, Mismatches: 57, Indels: 145
0.83 0.05 0.12
Matches are distributed among these distances:
27 24 0.02
29 4 0.00
30 12 0.01
31 7 0.01
32 120 0.12
33 170 0.17
34 224 0.22
35 283 0.28
36 87 0.09
37 69 0.07
38 19 0.02
39 2 0.00
ACGTcount: A:0.19, C:0.35, G:0.12, T:0.34
Consensus pattern (34 bp):
CCACAACTCCGTGGCACTCTTTTTCCTTTTAAGC
Found at i:1745 original size:69 final size:67
Alignment explanation
Indices: 1596--2782 Score: 1249
Period size: 69 Copynumber: 17.5 Consensus size: 67
1586 TCAAATACCA
* * * *
1596 TTTAAAGTCCACAACTCCGTGGCACTTTTTTCATCTTAAGTCCACAACTCCGTGGCAC-CTTTTT
1 TTTAAAGCCCACAACTCCGTGGCACCTTTTTC-TTTTAAGCCCACAACTCCGTGGCACTCTTTTT
*
1660 CTT
65 CCT
* *
1663 TTTAAAGCCCACAACTCCGTGGCACCTTTTTCTGTTTAAAGCCCACAACTCTGTGGCACACTTTT
1 TTTAAAGCCCACAACTCCGTGGCACCTTTTTCT-TTT-AAGCCCACAACTCCGTGGCACTCTTTT
*
1728 TCTT
64 TCCT
1732 TTTAAAGCCCACAACTCCGTGGCACTCTTTTTTCCCTTTTCAAGCCCACAACTCCGTGGCAC-CT
1 TTTAAAGCCCACAACTCCGTGGCAC-C-TTTTT--CTTTT-AAGCCCACAACTCCGTGGCACTCT
*
1796 TTTTCTT
61 TTTTCCT
1803 TTTAAAGCCCACAACTCCGT-GCACTCTTTTTCCCTTTTTAAGCCCACAACTCCGTGGCAC-CTT
1 TTTAAAGCCCACAACTCCGTGGCAC-CTTTTT--C-TTTTAAGCCCACAACTCCGTGGCACTC-T
1866 CTTTTCCT
61 -TTTTCCT
* * * * *
1874 TTT-AAGTCCACGACTCCGTGGCA-CTCTTTTCCTTTAAGTCCACGACTCCGTGGCACTC-TTTT
1 TTTAAAGCCCACAACTCCGTGGCACCT-TTTTCTTTTAAGCCCACAACTCCGTGGCACTCTTTTT
1936 CC-
65 CCT
* * * *
1938 TTT-AAGCCCACAACTACGTGGCACTCTTTTCCTTCTAAGCCCACAACTTCGTGGCACTCTTTTT
1 TTTAAAGCCCACAACTCCGTGGCAC-CTTTTTCTTTTAAGCCCACAACTCCGTGGCACTCTTTTT
2002 CCT
65 CCT
* * *
2005 TCT-AAGCCCACAACTCCGTGGCACCTTCTTTTCCTTCTAAGCCCACAACTTCGTGGCACTCTTT
1 TTTAAAGCCCACAACTCCGTGGCACC-T-TTTT-CTTTTAAGCCCACAACTCCGTGGCACTCTTT
2069 CTT-CT
63 -TTCCT
*
2074 TTCAAAGCCCACAACTCCGTGGCCACCTTTTTCTTTTTAAAGCCCACAACTCCGTGGCACTCTTT
1 TTTAAAGCCCACAACTCCGTGG-CACCTTTTTC-TTTT-AAGCCCACAACTCCGTGGCACTCTTT
2139 TTCCCT
63 TT-CCT
2145 TTTCAAAGCCCACAACTCCGTGGCACCTTTTTCTTTTAAAGCCCACAACTCCGTGGCACTCTTTT
1 TTT-AAAGCCCACAACTCCGTGGCACCTTTTTCTTTT-AAGCCCACAACTCCGTGGCACTCTTTT
2210 TCCCTT
64 T-CC-T
2216 TTTAAAGCCC-CAACTCCGTGGCACCTTCTTTTTCCTTTTAAGCCCACAACTCCGTGGCA--C--
1 TTTAAAGCCCACAACTCCGTGGCA-C--CTTTTT-CTTTTAAGCCCACAACTCCGTGGCACTCTT
2276 ---CCT
62 TTTCCT
* * * * *
2279 TTT-AAGTCCACGACTCCGTGGCACTCTTTTCCTTTTAAGTCCACGACTCCGTGGCACTC-TTTT
1 TTTAAAGCCCACAACTCCGTGGCAC-CTTTTTCTTTTAAGCCCACAACTCCGTGGCACTCTTTTT
2342 CC-
65 CCT
* * * *
2344 -TTAAAGCCCACAACTACGTGGCA-CTCTTTCCTTCTAAGCCCACAACTTCGTGGCACTCTTTTT
1 TTTAAAGCCCACAACTCCGTGGCACCT-TTTTCTTTTAAGCCCACAACTCCGTGGCACTCTTTTT
2407 CCT
65 CCT
* * *
2410 TCT-AAGCCCACAACTCCGTGGCACCTTCTTTTCCTTCTAAGCCCACAACTTCGTGGCACTCTTT
1 TTTAAAGCCCACAACTCCGTGGCACC-T-TTTT-CTTTTAAGCCCACAACTCCGTGGCACTCTTT
2474 CTT-CT
63 -TTCCT
2479 TTTCAAAG-CCACAACTCCGTGGCACCTTTTTCTGTTTAAAGCCCACAACTCCGTGGCACTCTTT
1 TTT-AAAGCCCACAACTCCGTGGCACCTTTTTCT-TTT-AAGCCCACAACTCCGTGGCACTCTTT
2543 TTCCCT
63 TT-CCT
2549 TTT-AAGCCCACAACTCCGTGGCACCTTTTTCTTTTAAAGCCCACAACTCCGTGGCACTCTTTTT
1 TTTAAAGCCCACAACTCCGTGGCACCTTTTTCTTTT-AAGCCCACAACTCCGTGGCACTCTTTTT
2613 CCCT
65 -CCT
* * * * *
2617 TTT-AAGTCCACAACTCCGTGGCATCTTTCTCTCTTCCTAAAGCCCACACAAGTCGGTGGCAAC-
1 TTTAAAGCCCACAACTCCGTGGCACCTTT-T-TCTT--TTAAG-CC-CACAACTCCGTGGC-ACT
2680 C---TT-C-
59 CTTTTTCCT
* * *
2684 GTCAAAGCCCACAACTCTGTGGCACCTTTTTCTTTTAAAGCCCACAACTCCGTGGCACTCTTTTT
1 TTTAAAGCCCACAACTCCGTGGCACCTTTTTCTTTT-AAGCCCACAACTCCGTGGCACTCTTTTT
2749 CCCT
65 -CCT
* *
2753 TTT-AAGTCCACAACTCCGTGGCATCTTTTT
1 TTTAAAGCCCACAACTCCGTGGCACCTTTTT
2783 TCCTTCCCAA
Statistics
Matches: 982, Mismatches: 66, Indels: 143
0.82 0.06 0.12
Matches are distributed among these distances:
60 23 0.02
61 6 0.01
62 9 0.01
63 31 0.03
64 55 0.06
65 58 0.06
66 37 0.04
67 83 0.08
68 151 0.15
69 210 0.21
70 152 0.15
71 74 0.08
72 71 0.07
73 20 0.02
74 2 0.00
ACGTcount: A:0.19, C:0.35, G:0.12, T:0.34
Consensus pattern (67 bp):
TTTAAAGCCCACAACTCCGTGGCACCTTTTTCTTTTAAGCCCACAACTCCGTGGCACTCTTTTTC
CT
Found at i:2289 original size:27 final size:27
Alignment explanation
Indices: 2249--2341 Score: 105
Period size: 27 Copynumber: 3.2 Consensus size: 27
2239 CCTTCTTTTT
* *
2249 CCTTTTAAGCCCACAACTCCGTGGCAC
1 CCTTTTAAGTCCACGACTCCGTGGCAC
2276 CCTTTTAAGTCCACGACTCCGTGGCACTC
1 CCTTTTAAGTCCACGACTCCGTGGCA--C
2305 TTTTCCTTTTAAGTCCACGACTCCGTGGCAC
1 ----CCTTTTAAGTCCACGACTCCGTGGCAC
*
2336 TCTTTT
1 CCTTTT
2342 CCTTAAAGCC
Statistics
Matches: 57, Mismatches: 3, Indels: 12
0.79 0.04 0.17
Matches are distributed among these distances:
27 29 0.51
29 1 0.02
31 1 0.02
33 26 0.46
ACGTcount: A:0.17, C:0.35, G:0.15, T:0.32
Consensus pattern (27 bp):
CCTTTTAAGTCCACGACTCCGTGGCAC
Found at i:2822 original size:33 final size:31
Alignment explanation
Indices: 2784--2882 Score: 153
Period size: 33 Copynumber: 3.1 Consensus size: 31
2774 CATCTTTTTT
2784 CCTTCCCAAAGCCCCACACAAGTCGGTGGCAA
1 CCTTCCCAAAG-CCCACACAAGTCGGTGGCAA
*
2816 CTCTTCCTAAAGCCCACACAAGTCGGTGGCAA
1 C-CTTCCCAAAGCCCACACAAGTCGGTGGCAA
2848 CCTTCTTCCAAAGCCCACACAAGTCGGTGGCAA
1 CCTTC--CCAAAGCCCACACAAGTCGGTGGCAA
2881 CC
1 CC
2883 CCTCTAAGCC
Statistics
Matches: 62, Mismatches: 2, Indels: 5
0.90 0.03 0.07
Matches are distributed among these distances:
31 4 0.06
32 22 0.35
33 36 0.58
ACGTcount: A:0.27, C:0.38, G:0.18, T:0.16
Consensus pattern (31 bp):
CCTTCCCAAAGCCCACACAAGTCGGTGGCAA
Found at i:2968 original size:49 final size:49
Alignment explanation
Indices: 2911--4119 Score: 1743
Period size: 49 Copynumber: 24.8 Consensus size: 49
2901 CTGGCCTTTC
*
2911 CATCTTTAAGTCCAATGTAGCTGGCCTTGACTCAGCACATTGGCACCTT
1 CATCTTTAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCACCTT
* * * * *
2960 CATCTTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCATCTC
1 CATCTTTAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCACCTT
*
3009 CATCTTTAAGTCCAATGTAGCTGGCCTTGACTCAGCACATTGGCACCTT
1 CATCTTTAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCACCTT
* * * * *
3058 CATCTTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCATCTC
1 CATCTTTAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCACCTT
*
3107 CATCTTT-AGTCCAATGTAGCTGGCCTTGACTCAGCACATTGGCACCTT
1 CATCTTTAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCACCTT
* * * * *
3155 CATCTTTAAGTCCAATATCGCTGGCCTTGAATCCGCATATTGGCATCTT
1 CATCTTTAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCACCTT
*
3204 CATCTTTAAGTCCAATGTAGCTGGCCTTGACTCAGCACATTGGCACCTT
1 CATCTTTAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCACCTT
* * * * *
3253 CATCTTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGG-ATCTC
1 CATCTTTAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCACCTT
*
3301 CATCTTTAAGTCCAATGTAGCTGGCCTTGACTCAGCACATTGGCACCTT
1 CATCTTTAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCACCTT
* * * *
3350 CATCTTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCATCTT
1 CATCTTTAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCACCTT
*
3399 CATCTTTAAGTCCAATGTAGCTGGCCTTGACTCAGCACATTGGCACCTT
1 CATCTTTAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCACCTT
* * *
3448 CATCTTTAAGTCCAATATCA-CTGGCCTTGAATCAGCATATTGGCATCTT
1 CATCTTTAAGTCCAATGT-AGCTGGCCTTGAATCAGCACATTGGCACCTT
*
3497 CATCTTTAAGTCCAATGTAGCTGGCCTTGACTCAGCACATTGGCACCTT
1 CATCTTTAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCACCTT
* * * *
3546 CATCTTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCATCTT
1 CATCTTTAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCACCTT
*
3595 CATCTTTAAGTCCAATGTAGCTGGCCTTGACTCAGCACATTGGCACCTT
1 CATCTTTAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCACCTT
* * * *
3644 CATCTTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCATCTT
1 CATCTTTAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCACCTT
*
3693 CATCTTTAAGTCCAATGTAGCTGGCCTTGACTCAGCACATTGGCACCTT
1 CATCTTTAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCACCTT
* * * *
3742 CATCTTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCATCTT
1 CATCTTTAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCACCTT
*
3791 CATCTTTAAGTCCAATGTAGCTGGCCTTGACTCAGCACATTGGCACCTT
1 CATCTTTAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCACCTT
* * * *
3840 CATCTTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCATCTT
1 CATCTTTAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCACCTT
* *
3889 CATCTTTAAGTCCAATGTAGCTGGCCTTGACTCAGCACATTAGCACCTT
1 CATCTTTAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCACCTT
* * *
3938 CATCTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCATCTT
1 CATCTTTAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCACCTT
*
3987 CATCTTTAAGTCCAATGTAGCTGGCCTTGACTCAGCACATTGGCA----
1 CATCTTTAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCACCTT
* * * *
4032 C--CTTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCACATTTT
1 CATCTTTAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCAC--CTT
*
4081 CCATCTTTAAGTTCAATGTAGCTGGCCTTGAATCAGCAC
1 -CATCTTTAAGTCCAATGTAGCTGGCCTTGAATCAGCAC
4120 GTTGACATCC
Statistics
Matches: 1024, Mismatches: 123, Indels: 23
0.88 0.11 0.02
Matches are distributed among these distances:
43 38 0.04
45 1 0.00
48 85 0.08
49 867 0.85
50 2 0.00
52 31 0.03
ACGTcount: A:0.24, C:0.27, G:0.17, T:0.32
Consensus pattern (49 bp):
CATCTTTAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCACCTT
Found at i:3078 original size:98 final size:98
Alignment explanation
Indices: 2911--4185 Score: 2260
Period size: 98 Copynumber: 13.0 Consensus size: 98
2901 CTGGCCTTTC
2911 CATCTTTAAGTCCAATGTAGCTGGCCTTGACTCAGCACATTGGCACCTTCATCTTTAAGTCCAAT
1 CATCTTTAAGTCCAATGTAGCTGGCCTTGACTCAGCACATTGGCACCTTCATCTTTAAGTCCAAT
*
2976 ATCGCTGGCCTTGAATCAGCATATTGGCATCTC
66 ATCGCTGGCCTTGAATCAGCATATTGGCATCTT
3009 CATCTTTAAGTCCAATGTAGCTGGCCTTGACTCAGCACATTGGCACCTTCATCTTTAAGTCCAAT
1 CATCTTTAAGTCCAATGTAGCTGGCCTTGACTCAGCACATTGGCACCTTCATCTTTAAGTCCAAT
*
3074 ATCGCTGGCCTTGAATCAGCATATTGGCATCTC
66 ATCGCTGGCCTTGAATCAGCATATTGGCATCTT
3107 CATCTTT-AGTCCAATGTAGCTGGCCTTGACTCAGCACATTGGCACCTTCATCTTTAAGTCCAAT
1 CATCTTTAAGTCCAATGTAGCTGGCCTTGACTCAGCACATTGGCACCTTCATCTTTAAGTCCAAT
*
3171 ATCGCTGGCCTTGAATCCGCATATTGGCATCTT
66 ATCGCTGGCCTTGAATCAGCATATTGGCATCTT
3204 CATCTTTAAGTCCAATGTAGCTGGCCTTGACTCAGCACATTGGCACCTTCATCTTTAAGTCCAAT
1 CATCTTTAAGTCCAATGTAGCTGGCCTTGACTCAGCACATTGGCACCTTCATCTTTAAGTCCAAT
*
3269 ATCGCTGGCCTTGAATCAGCATATTGG-ATCTC
66 ATCGCTGGCCTTGAATCAGCATATTGGCATCTT
3301 CATCTTTAAGTCCAATGTAGCTGGCCTTGACTCAGCACATTGGCACCTTCATCTTTAAGTCCAAT
1 CATCTTTAAGTCCAATGTAGCTGGCCTTGACTCAGCACATTGGCACCTTCATCTTTAAGTCCAAT
3366 ATCGCTGGCCTTGAATCAGCATATTGGCATCTT
66 ATCGCTGGCCTTGAATCAGCATATTGGCATCTT
3399 CATCTTTAAGTCCAATGTAGCTGGCCTTGACTCAGCACATTGGCACCTTCATCTTTAAGTCCAAT
1 CATCTTTAAGTCCAATGTAGCTGGCCTTGACTCAGCACATTGGCACCTTCATCTTTAAGTCCAAT
*
3464 ATCACTGGCCTTGAATCAGCATATTGGCATCTT
66 ATCGCTGGCCTTGAATCAGCATATTGGCATCTT
3497 CATCTTTAAGTCCAATGTAGCTGGCCTTGACTCAGCACATTGGCACCTTCATCTTTAAGTCCAAT
1 CATCTTTAAGTCCAATGTAGCTGGCCTTGACTCAGCACATTGGCACCTTCATCTTTAAGTCCAAT
3562 ATCGCTGGCCTTGAATCAGCATATTGGCATCTT
66 ATCGCTGGCCTTGAATCAGCATATTGGCATCTT
3595 CATCTTTAAGTCCAATGTAGCTGGCCTTGACTCAGCACATTGGCACCTTCATCTTTAAGTCCAAT
1 CATCTTTAAGTCCAATGTAGCTGGCCTTGACTCAGCACATTGGCACCTTCATCTTTAAGTCCAAT
3660 ATCGCTGGCCTTGAATCAGCATATTGGCATCTT
66 ATCGCTGGCCTTGAATCAGCATATTGGCATCTT
3693 CATCTTTAAGTCCAATGTAGCTGGCCTTGACTCAGCACATTGGCACCTTCATCTTTAAGTCCAAT
1 CATCTTTAAGTCCAATGTAGCTGGCCTTGACTCAGCACATTGGCACCTTCATCTTTAAGTCCAAT
3758 ATCGCTGGCCTTGAATCAGCATATTGGCATCTT
66 ATCGCTGGCCTTGAATCAGCATATTGGCATCTT
3791 CATCTTTAAGTCCAATGTAGCTGGCCTTGACTCAGCACATTGGCACCTTCATCTTTAAGTCCAAT
1 CATCTTTAAGTCCAATGTAGCTGGCCTTGACTCAGCACATTGGCACCTTCATCTTTAAGTCCAAT
3856 ATCGCTGGCCTTGAATCAGCATATTGGCATCTT
66 ATCGCTGGCCTTGAATCAGCATATTGGCATCTT
*
3889 CATCTTTAAGTCCAATGTAGCTGGCCTTGACTCAGCACATTAGCACCTTCATCTTTAAGTCCAAT
1 CATCTTTAAGTCCAATGTAGCTGGCCTTGACTCAGCACATTGGCACCTTCATCTTTAAGTCCAAT
*
3954 ATAGCTGGCCTTGAATCAGCATATTGGCATCTT
66 ATCGCTGGCCTTGAATCAGCATATTGGCATCTT
3987 CATCTTTAAGTCCAATGTAGCTGGCCTTGACTCAGCACATTGGCA----C--CTTTAAGTCCAAT
1 CATCTTTAAGTCCAATGTAGCTGGCCTTGACTCAGCACATTGGCACCTTCATCTTTAAGTCCAAT
*
4046 ATCGCTGGCCTTGAATCAGCATATTGGCACATTTT
66 ATCGCTGGCCTTGAATCAGCATATTGG--CATCTT
* * * * *
4081 CCATCTTTAAGTTCAATGTAGCTGGCCTTGAATCAGCACGTTGACATCCTTTTTCTCATCTTTAG
1 -CATCTTTAAGTCCAATGTAGCTGGCCTTGACTCAGCACATTGGCA-CC----T-TCATCTTTAA
* * * *
4146 GCCCAATATCGTTGGCCATGAATCAACATATTGGCATCTT
59 GTCCAATATCGCTGGCCTTGAATCAGCATATTGGCATCTT
4186 TATCACTTTT
Statistics
Matches: 1138, Mismatches: 22, Indels: 27
0.96 0.02 0.02
Matches are distributed among these distances:
92 39 0.03
94 6 0.01
95 41 0.04
97 191 0.17
98 820 0.72
105 6 0.01
107 35 0.03
ACGTcount: A:0.24, C:0.27, G:0.17, T:0.33
Consensus pattern (98 bp):
CATCTTTAAGTCCAATGTAGCTGGCCTTGACTCAGCACATTGGCACCTTCATCTTTAAGTCCAAT
ATCGCTGGCCTTGAATCAGCATATTGGCATCTT
Found at i:4062 original size:92 final size:94
Alignment explanation
Indices: 3941--4119 Score: 299
Period size: 92 Copynumber: 1.9 Consensus size: 94
3931 GCACCTTCAT
3941 CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGG-CATCTT-CATCTTTAAGTCCAATG
1 CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGACATCTTCCATCTTTAAGTCCAATG
*
4004 TAGCTGGCCTTGACTCAGCACATTGGCAC
66 TAGCTGGCCTTGAATCAGCACATTGGCAC
* * *
4033 CTTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCACATTTTCCATCTTTAAGTTCAAT
1 CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGG-ACATCTTCCATCTTTAAGTCCAAT
4098 GTAGCTGGCCTTGAATCAGCAC
65 GTAGCTGGCCTTGAATCAGCAC
4120 GTTGACATCC
Statistics
Matches: 80, Mismatches: 4, Indels: 3
0.92 0.05 0.03
Matches are distributed among these distances:
92 39 0.49
94 5 0.06
95 36 0.45
ACGTcount: A:0.25, C:0.25, G:0.18, T:0.32
Consensus pattern (94 bp):
CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGACATCTTCCATCTTTAAGTCCAATG
TAGCTGGCCTTGAATCAGCACATTGGCAC
Found at i:5093 original size:13 final size:13
Alignment explanation
Indices: 5075--5099 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
5065 CATAAAATGT
5075 TGTATCGATACAA
1 TGTATCGATACAA
5088 TGTATCGATACA
1 TGTATCGATACA
5100 TATTTTTTTT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.36, C:0.16, G:0.16, T:0.32
Consensus pattern (13 bp):
TGTATCGATACAA
Found at i:5184 original size:13 final size:13
Alignment explanation
Indices: 5166--5190 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
5156 ATTACTCACA
5166 TGTATCGATACAT
1 TGTATCGATACAT
5179 TGTATCGATACA
1 TGTATCGATACA
5191 CTGATTTTTG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.36
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:5255 original size:52 final size:52
Alignment explanation
Indices: 5199--5319 Score: 224
Period size: 52 Copynumber: 2.3 Consensus size: 52
5189 CACTGATTTT
*
5199 TGTATCGATACATGCAGGCAAATTTGCCCAGATGTATCGATACATTATAAAA
1 TGTATCGATACATGCAGGCAAATTTGCCCAGATGTATCGATACACTATAAAA
*
5251 TGTATCGATACATGCAGGCAAATTTGCCCAGATGTATCGATACACTATTAAA
1 TGTATCGATACATGCAGGCAAATTTGCCCAGATGTATCGATACACTATAAAA
5303 TGTATCGATACATGCAG
1 TGTATCGATACATGCAG
5320 TAACTTTTCA
Statistics
Matches: 67, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
52 67 1.00
ACGTcount: A:0.35, C:0.18, G:0.18, T:0.29
Consensus pattern (52 bp):
TGTATCGATACATGCAGGCAAATTTGCCCAGATGTATCGATACACTATAAAA
Found at i:8617 original size:27 final size:28
Alignment explanation
Indices: 8553--8630 Score: 115
Period size: 27 Copynumber: 2.8 Consensus size: 28
8543 GCGATAAAAT
8553 CGGGGTTGGAGTATCCCCTCGA-GAAATAA
1 CGGGGTTGGAGTAT-CCC-CGATGAAATAA
*
8582 CGGGGTTGGAGTATCCCCGATG-ATTAA
1 CGGGGTTGGAGTATCCCCGATGAAATAA
8609 CGGGGTTGGAGTATCCCCGATG
1 CGGGGTTGGAGTATCCCCGATG
8631 TGAAGAAATT
Statistics
Matches: 47, Mismatches: 1, Indels: 4
0.90 0.02 0.08
Matches are distributed among these distances:
27 29 0.62
28 4 0.09
29 14 0.30
ACGTcount: A:0.22, C:0.21, G:0.35, T:0.23
Consensus pattern (28 bp):
CGGGGTTGGAGTATCCCCGATGAAATAA
Found at i:8716 original size:52 final size:52
Alignment explanation
Indices: 8617--8736 Score: 138
Period size: 52 Copynumber: 2.3 Consensus size: 52
8607 AACGGGGTTG
* * *
8617 GAGTATCCCCGATGTGAAGAAATTGGTTGTTTTTTGGACATAAATCGGAGTTA
1 GAGTATCCCCGAT-TGAAGAAATTAGTTGTTTTTTGAAAATAAATCGGAGTTA
8670 GAGTATCCCCGATT-ATAGAACATTAG-TG-TTTTTGAAAATACAATCGGAGTTA
1 GAGTATCCCCGATTGA-AGAA-ATTAGTTGTTTTTTGAAAATA-AATCGGAGTTA
* *
8722 GAATATCCTCGATTG
1 GAGTATCCCCGATTG
8737 TGGAGAATTG
Statistics
Matches: 58, Mismatches: 5, Indels: 8
0.82 0.07 0.11
Matches are distributed among these distances:
51 11 0.19
52 30 0.52
53 17 0.29
ACGTcount: A:0.31, C:0.13, G:0.23, T:0.33
Consensus pattern (52 bp):
GAGTATCCCCGATTGAAGAAATTAGTTGTTTTTTGAAAATAAATCGGAGTTA
Found at i:12441 original size:63 final size:60
Alignment explanation
Indices: 12247--12456 Score: 175
Period size: 63 Copynumber: 3.5 Consensus size: 60
12237 TTAGAGGTGT
* * * *
12247 CTGCTCTTTGGGGACTGACATGGTGCCACCAACTTGTG-GGGCTTGAAAAGAAAAAAGCAATC
1 CTGCTCTTTGGGGACTGAAAAGATGCCACCACCTTGTGTGGGCTTGAAAAG--AAAAGC-ATC
* * ***
12309 CTGCTCTTT-GGGACTGAAAA-ATGCCACCACC--GTGTGGGCTTTAAACG-GTTG--TC
1 CTGCTCTTTGGGGACTGAAAAGATGCCACCACCTTGTGTGGGCTTGAAAAGAAAAGCATC
* * *
12362 CTGCCTCTTAGGGGACTGAAAAGGTGCCACCACCTTGTGTGGGCCTTGAAAAAGACCAAGCATC
1 CTG-CTCTTTGGGGACTGAAAAGATGCCACCACCTTGTGTGGG-CTTG-AAAAGA-AAAGCATC
* *
12426 CTGCTCTTTGAGGACTGAAAACATGCCACCA
1 CTGCTCTTTGGGGACTGAAAAGATGCCACCA
12457 AACCTGTTGT
Statistics
Matches: 116, Mismatches: 20, Indels: 23
0.73 0.13 0.14
Matches are distributed among these distances:
53 5 0.04
54 5 0.04
55 11 0.09
56 11 0.09
58 10 0.09
59 13 0.11
60 13 0.11
61 9 0.08
62 10 0.09
63 24 0.21
64 5 0.04
ACGTcount: A:0.26, C:0.25, G:0.26, T:0.23
Consensus pattern (60 bp):
CTGCTCTTTGGGGACTGAAAAGATGCCACCACCTTGTGTGGGCTTGAAAAGAAAAGCATC
Found at i:12455 original size:116 final size:110
Alignment explanation
Indices: 12228--12452 Score: 274
Period size: 116 Copynumber: 2.0 Consensus size: 110
12218 TGCCACCATT
* * * *
12228 GTGTGGGCTTTAGAGGTGTCTGCTCTTTGGGGACTGACATGGTGCCACCAACTTGTGGGGCTTGA
1 GTGTGGGCTTTAAAGGTGTCTGCTCTTAGGGGACTGAAAAGGTGCCACCAACTTGTGGGGCTTGA
12293 AAAGAAAAAAGCAATCCTGCTCTTTGGGACTGAAAAATGCCACCACC
66 AAAGAAAAAAGCAATCCTGCTCTTTGGGACTGAAAAATG-C-CCACC
*
12340 GTGTGGGCTTTAAACGGTTGTCCTGCCTCTTAGGGGACTGAAAAGGTGCCACCACCTTGTGTGGG
1 GTGTGGGCTTTAAA-GG-TGT-CTG-CTCTTAGGGGACTGAAAAGGTGCCACCAACTTGTG-GGG
**
12405 CCTTGAAAA-AGACCAAGC-ATCCTGCTCTTTGAGGACTGAAAACATGCC
61 -CTTGAAAAGA-AAAAAGCAATCCTGCTCTTTG-GGACTGAAAA-ATGCC
12453 ACCAAACCTG
Statistics
Matches: 97, Mismatches: 7, Indels: 13
0.83 0.06 0.11
Matches are distributed among these distances:
112 13 0.13
113 2 0.02
114 3 0.03
115 3 0.03
116 31 0.32
117 18 0.19
118 24 0.25
119 3 0.03
ACGTcount: A:0.24, C:0.23, G:0.28, T:0.25
Consensus pattern (110 bp):
GTGTGGGCTTTAAAGGTGTCTGCTCTTAGGGGACTGAAAAGGTGCCACCAACTTGTGGGGCTTGA
AAAGAAAAAAGCAATCCTGCTCTTTGGGACTGAAAAATGCCCACC
Found at i:12731 original size:54 final size:53
Alignment explanation
Indices: 12603--12834 Score: 214
Period size: 52 Copynumber: 4.3 Consensus size: 53
12593 GAAAAGCATC
*
12603 CTGCTCTTTG-GGACT-GAAACATGCCACCAA-TTGTGTGGGCTTTACAAGGTGT
1 CTGCTCTTTGAGGACTGGAAA-ATGCCACCAACTTGTGTGGGCTTGA-AAGGTGT
*
12655 CCTG-TC-TTGAGGATTGGAAAAATGCCATCCAACTTTGTGTGGG-TTGAAAGGTGT
1 -CTGCTCTTTGAGGACTGG-AAAATGCCA-CCAAC-TTGTGTGGGCTTGAAAGGTGT
* * *
12709 CTGCTCTTTGAGGCCTGGAAAATGCCCCCAACTTCTGT-GGCTTGAAAGGTGT
1 CTGCTCTTTGAGGACTGGAAAATGCCACCAACTTGTGTGGGCTTGAAAGGTGT
12761 CT-CTGCTCTTGAGGACTGGAATAGAAAATGCCACCAAC-TGTGTGGGCTTTGAAA-GTGT
1 CTGCT-CT-TTGAGGACT-G----GAAAATGCCACCAACTTGTGTGGGC-TTGAAAGGTGT
*
12819 CTGCTCTTTGGGGACT
1 CTGCTCTTTGAGGACT
12835 AAAAAGCGGA
Statistics
Matches: 150, Mismatches: 10, Indels: 34
0.77 0.05 0.18
Matches are distributed among these distances:
51 7 0.05
52 26 0.17
53 26 0.17
54 25 0.17
55 12 0.08
56 9 0.06
57 12 0.08
58 25 0.17
59 8 0.05
ACGTcount: A:0.22, C:0.20, G:0.28, T:0.30
Consensus pattern (53 bp):
CTGCTCTTTGAGGACTGGAAAATGCCACCAACTTGTGTGGGCTTGAAAGGTGT
Found at i:12780 original size:53 final size:54
Alignment explanation
Indices: 12426--12834 Score: 194
Period size: 58 Copynumber: 7.3 Consensus size: 54
12416 ACCAAGCATC
* * *
12426 CTGCTCTTTGAGGACTGAAAACATGCCACCAAACCTGTTGTGGCTTTTAAAAGGTGTC-
1 CTGCTCTTTGAGGACTGGAAA-ATGCCACC-AACTTG-TGTGGC--TTGAAAGGTGTCT
* * *
12484 CTGCTCTTTGAGGATTGG-ACATGCCCACCAAACTTG-GTGGGCTTTG-ACGTGTTGTC-
1 CTGCTCTTTGAGGACTGGAAAATG-CCACC-AACTTGTGT-GGC-TTGAAAG-G-TGTCT
* * **
12540 CTGCTCTTTGAGGACT-GAAACGGGGGTGCC-CCACCTTGTGTGTGCTTTGAAAAGAAAAG-CAT
1 CTGCTCTTTGAGGACTGGAAA-----ATGCCACCAACTTGTGTG-GC-TTG-AAAG--GTGTC-T
*
12602 CCTGCTCTTTG-GGACT-GAAACATGCCACCAA-TTGTGTGGGCTTTACAAGGTGTC-
1 -CTGCTCTTTGAGGACTGGAAA-ATGCCACCAACTTGTGT-GGCTTGA-AAGGTGTCT
* *
12656 CTG-TC-TTGAGGATTGGAAAAATGCCATCCAACTTTGTGTGGGTTGAAAGGTG--T
1 CTGCTCTTTGAGGACTGG-AAAATGCCA-CCAAC-TTGTGTGGCTTGAAAGGTGTCT
* * *
12709 CTGCTCTTTGAGGCCTGGAAAATGCCCCCAACTTCTGTGGCTTGAAAGGTGTCT
1 CTGCTCTTTGAGGACTGGAAAATGCCACCAACTTGTGTGGCTTGAAAGGTGTCT
12763 CTGCTC-TTGAGGACTGGAATAGAAAATGCCACCAAC-TGTGTGGGCTTTGAAA-GTG--T
1 CTGCTCTTTGAGGACT-G----GAAAATGCCACCAACTTGTGT-GGC-TTGAAAGGTGTCT
*
12819 CTGCTCTTTGGGGACT
1 CTGCTCTTTGAGGACT
12835 AAAAAGCGGA
Statistics
Matches: 278, Mismatches: 32, Indels: 83
0.71 0.08 0.21
Matches are distributed among these distances:
51 3 0.01
52 23 0.08
53 26 0.09
54 33 0.12
55 22 0.08
56 41 0.15
57 29 0.10
58 54 0.19
59 20 0.07
60 3 0.01
61 5 0.02
62 9 0.03
63 10 0.04
ACGTcount: A:0.22, C:0.21, G:0.27, T:0.30
Consensus pattern (54 bp):
CTGCTCTTTGAGGACTGGAAAATGCCACCAACTTGTGTGGCTTGAAAGGTGTCT
Found at i:12798 original size:58 final size:56
Alignment explanation
Indices: 12603--12820 Score: 196
Period size: 53 Copynumber: 4.0 Consensus size: 56
12593 GAAAAGCATC
* *
12603 CTGCTCTTTG-GGACT-GA-AACATGCCACCAA-TTGTGTGGGCTTTACAAGGTGTC-
1 CTGCTC-TTGAGGACTGGAGAAAATGCCACCAACTTGTGTGGGCTTGA-AAGGTGTCT
*
12656 CTG-TCTTGAGGATTGGA-AAAATGCCATCCAACTTTGTGTGGG-TTGAAAGGTG--T
1 CTGCTCTTGAGGACTGGAGAAAATGCCA-CCAAC-TTGTGTGGGCTTGAAAGGTGTCT
* * *
12709 CTGCTCTTTGAGGCCT-G-GAAAATGCCCCCAACTTCTGT-GGCTTGAAAGGTGTCT
1 CTGCTC-TTGAGGACTGGAGAAAATGCCACCAACTTGTGTGGGCTTGAAAGGTGTCT
12763 CTGCTCTTGAGGACTGGAATAGAAAATGCCACCAAC-TGTGTGGGCTTTGAAA-GTGTCT
1 CTGCTCTTGAGGACTGG---AGAAAATGCCACCAACTTGTGTGGGC-TTGAAAGGTGTCT
12821 GCTCTTTGGG
Statistics
Matches: 136, Mismatches: 10, Indels: 33
0.76 0.06 0.18
Matches are distributed among these distances:
51 5 0.04
52 21 0.15
53 29 0.21
54 29 0.21
55 10 0.07
56 9 0.07
57 4 0.03
58 23 0.17
59 6 0.04
ACGTcount: A:0.22, C:0.20, G:0.28, T:0.30
Consensus pattern (56 bp):
CTGCTCTTGAGGACTGGAGAAAATGCCACCAACTTGTGTGGGCTTGAAAGGTGTCT
Found at i:13894 original size:14 final size:15
Alignment explanation
Indices: 13839--13912 Score: 58
Period size: 15 Copynumber: 4.7 Consensus size: 15
13829 TCGCTAAGCA
*
13839 TTTTTTTTTTTCTCT
1 TTTTTTTTTTTGTCT
* * *
13854 GTTTCTTGTTTTGCACT
1 -TTTTTTTTTTTG-TCT
*
13871 ATTTTGTTTTTTTGTTT
1 -TTTT-TTTTTTTGTCT
*
13888 TTTTTTTTTTTGCCT
1 TTTTTTTTTTTGTCT
13903 TTTTTTTTTT
1 TTTTTTTTTT
13913 GAGAGAAGTG
Statistics
Matches: 45, Mismatches: 11, Indels: 5
0.74 0.18 0.08
Matches are distributed among these distances:
15 19 0.42
16 13 0.29
17 6 0.13
18 7 0.16
ACGTcount: A:0.03, C:0.09, G:0.08, T:0.80
Consensus pattern (15 bp):
TTTTTTTTTTTGTCT
Found at i:21951 original size:52 final size:52
Alignment explanation
Indices: 21818--21958 Score: 230
Period size: 52 Copynumber: 2.7 Consensus size: 52
21808 TGAAAAGTTA
21818 CTGCATGTATCGATACATTTAATAGTGTATCGATACATCTGGGCAAATTTGC
1 CTGCATGTATCGATACATTTAATAGTGTATCGATACATCTGGGCAAATTTGC
* *
21870 CTGCATGTATCGATACATTTTATAATGTATCGATACATCTGGGCAAATTTGC
1 CTGCATGTATCGATACATTTAATAGTGTATCGATACATCTGGGCAAATTTGC
**
21922 CTGCATGTATCGATACA-AAAATCAGTGTATCGATACA
1 CTGCATGTATCGATACATTTAAT-AGTGTATCGATACA
21959 ATGTATCGAT
Statistics
Matches: 82, Mismatches: 6, Indels: 2
0.91 0.07 0.02
Matches are distributed among these distances:
51 2 0.02
52 80 0.98
ACGTcount: A:0.31, C:0.18, G:0.18, T:0.33
Consensus pattern (52 bp):
CTGCATGTATCGATACATTTAATAGTGTATCGATACATCTGGGCAAATTTGC
Found at i:21965 original size:13 final size:13
Alignment explanation
Indices: 21947--21971 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
21937 CAAAAATCAG
21947 TGTATCGATACAA
1 TGTATCGATACAA
21960 TGTATCGATACA
1 TGTATCGATACA
21972 TGTGAGTAAT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.36, C:0.16, G:0.16, T:0.32
Consensus pattern (13 bp):
TGTATCGATACAA
Found at i:22056 original size:13 final size:13
Alignment explanation
Indices: 22038--22062 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
22028 AAAAAAAATA
22038 TGTATCGATACAT
1 TGTATCGATACAT
22051 TGTATCGATACA
1 TGTATCGATACA
22063 ACATTTTATG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.36
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:22161 original size:21 final size:21
Alignment explanation
Indices: 22120--22161 Score: 66
Period size: 21 Copynumber: 2.0 Consensus size: 21
22110 GTTGGGACCT
*
22120 TGTATCGATACATTTTAACAA
1 TGTATCGATACATTTGAACAA
*
22141 TGTATCGATACATTTGGACAA
1 TGTATCGATACATTTGAACAA
22162 AAATGTAATT
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.36, C:0.14, G:0.14, T:0.36
Consensus pattern (21 bp):
TGTATCGATACATTTGAACAA
Found at i:25544 original size:20 final size:20
Alignment explanation
Indices: 25519--25615 Score: 142
Period size: 20 Copynumber: 4.8 Consensus size: 20
25509 GTAAAAAGAC
25519 AGAATGTATCGATACATTGA
1 AGAATGTATCGATACATTGA
25539 AGAATGTATCGATACATTGA
1 AGAATGTATCGATACATTGA
*
25559 AGAATGTATCGATACATTCA
1 AGAATGTATCGATACATTGA
*
25579 TA-CATGTATCGATACATTGA
1 -AGAATGTATCGATACATTGA
* *
25599 AAAATGTATCGAAACAT
1 AGAATGTATCGATACAT
25616 CTAGGTAAAA
Statistics
Matches: 70, Mismatches: 5, Indels: 4
0.89 0.06 0.05
Matches are distributed among these distances:
19 1 0.01
20 68 0.97
21 1 0.01
ACGTcount: A:0.41, C:0.12, G:0.16, T:0.30
Consensus pattern (20 bp):
AGAATGTATCGATACATTGA
Found at i:27533 original size:56 final size:58
Alignment explanation
Indices: 27415--27544 Score: 176
Period size: 58 Copynumber: 2.3 Consensus size: 58
27405 AGATCATAGA
* *
27415 AAATAACATTAACATTCATAAAATTACATCAAAATCCCTAGATTATGTAAAATGACCT
1 AAATGACATCAACATTCATAAAATTACATCAAAATCCCTAGATTATGTAAAATGACCT
* * *
27473 AAATGACATCAACATTCATAAAATTGCATCCAAGT-CCTAGA-TATAG-AAAATGACCT
1 AAATGACATCAACATTCATAAAATTACATCAAAATCCCTAGATTAT-GTAAAATGACCT
*
27529 AAATGACATCGACATT
1 AAATGACATCAACATT
27545 AACAAAACCA
Statistics
Matches: 65, Mismatches: 6, Indels: 4
0.87 0.08 0.05
Matches are distributed among these distances:
56 28 0.43
57 7 0.11
58 30 0.46
ACGTcount: A:0.46, C:0.18, G:0.08, T:0.27
Consensus pattern (58 bp):
AAATGACATCAACATTCATAAAATTACATCAAAATCCCTAGATTATGTAAAATGACCT
Found at i:27641 original size:50 final size:50
Alignment explanation
Indices: 27568--27673 Score: 126
Period size: 50 Copynumber: 2.1 Consensus size: 50
27558 CAAATGACCT
* * *
27568 AAATGA-CATCAATATTCAAAAAATTACATTC-AAGTCCCTAGATCATGGA
1 AAATGACCATCAACATTCAAAAAATTACA-TCAAAATCCCTAGATCATGAA
* * **
27617 AAATGACCATCAACATTTATAAAATTGTATCAAAATCCCTAGATCATGAA
1 AAATGACCATCAACATTCAAAAAATTACATCAAAATCCCTAGATCATGAA
27667 AAATGAC
1 AAATGAC
27674 TTAAATGACA
Statistics
Matches: 48, Mismatches: 7, Indels: 3
0.83 0.12 0.05
Matches are distributed among these distances:
49 8 0.17
50 40 0.83
ACGTcount: A:0.46, C:0.18, G:0.09, T:0.26
Consensus pattern (50 bp):
AAATGACCATCAACATTCAAAAAATTACATCAAAATCCCTAGATCATGAA
Found at i:27722 original size:58 final size:58
Alignment explanation
Indices: 27652--27788 Score: 161
Period size: 58 Copynumber: 2.4 Consensus size: 58
27642 TGTATCAAAA
* * * * *
27652 TCCCT-AGATCATGAAAAATGACTTAAATGACATTAAAATTCATGATATTACATCCAAG
1 TCCCTAAG-TCATGAAAAATGACTTAAATAACATCAAAATTCATAAAATGACATCCAAG
* **
27710 TCCCTAAGTCATGAAAAATAACTTAAATAACATCAAAATTCATAAAATGACATGGAAG
1 TCCCTAAGTCATGAAAAATGACTTAAATAACATCAAAATTCATAAAATGACATCCAAG
*
27768 -CCCTTAAGTCATGGAAAATGA
1 TCCC-TAAGTCATGAAAAATGA
27789 TGAAAATGAC
Statistics
Matches: 67, Mismatches: 10, Indels: 4
0.83 0.12 0.05
Matches are distributed among these distances:
57 3 0.04
58 62 0.93
59 2 0.03
ACGTcount: A:0.45, C:0.17, G:0.12, T:0.26
Consensus pattern (58 bp):
TCCCTAAGTCATGAAAAATGACTTAAATAACATCAAAATTCATAAAATGACATCCAAG
Found at i:29324 original size:19 final size:19
Alignment explanation
Indices: 29300--29367 Score: 76
Period size: 19 Copynumber: 3.9 Consensus size: 19
29290 AATTCAACAA
29300 TTTGTATCGATACATAAGT
1 TTTGTATCGATACATAAGT
29319 TTTGTATCGATAC--AA--
1 TTTGTATCGATACATAAGT
*
29334 --TATATCGATACATAAGT
1 TTTGTATCGATACATAAGT
*
29351 ATTGTATCGATACATAA
1 TTTGTATCGATACATAA
29368 TTAGCTACTG
Statistics
Matches: 41, Mismatches: 2, Indels: 12
0.75 0.04 0.22
Matches are distributed among these distances:
13 10 0.24
15 2 0.05
17 2 0.05
19 27 0.66
ACGTcount: A:0.37, C:0.12, G:0.13, T:0.38
Consensus pattern (19 bp):
TTTGTATCGATACATAAGT
Found at i:29345 original size:32 final size:32
Alignment explanation
Indices: 29304--29364 Score: 113
Period size: 32 Copynumber: 1.9 Consensus size: 32
29294 CAACAATTTG
*
29304 TATCGATACATAAGTTTTGTATCGATACAATA
1 TATCGATACATAAGTATTGTATCGATACAATA
29336 TATCGATACATAAGTATTGTATCGATACA
1 TATCGATACATAAGTATTGTATCGATACA
29365 TAATTAGCTA
Statistics
Matches: 28, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
32 28 1.00
ACGTcount: A:0.38, C:0.13, G:0.13, T:0.36
Consensus pattern (32 bp):
TATCGATACATAAGTATTGTATCGATACAATA
Found at i:29425 original size:13 final size:13
Alignment explanation
Indices: 29407--29432 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
29397 CATTTTTCTG
29407 TGTATCGATACAT
1 TGTATCGATACAT
29420 TGTATCGATACAT
1 TGTATCGATACAT
29433 GGATCTTTGT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.15, G:0.15, T:0.38
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:29429 original size:33 final size:33
Alignment explanation
Indices: 29387--29453 Score: 98
Period size: 33 Copynumber: 2.0 Consensus size: 33
29377 GCCAAGGAAA
***
29387 TGTATCGATACATTTTTCTGTGTATCGATACAT
1 TGTATCGATACATGGATCTGTGTATCGATACAT
*
29420 TGTATCGATACATGGATCTTTGTATCGATACAT
1 TGTATCGATACATGGATCTGTGTATCGATACAT
29453 T
1 T
29454 TGGAAATTTT
Statistics
Matches: 30, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
33 30 1.00
ACGTcount: A:0.25, C:0.15, G:0.16, T:0.43
Consensus pattern (33 bp):
TGTATCGATACATGGATCTGTGTATCGATACAT
Found at i:31926 original size:27 final size:28
Alignment explanation
Indices: 31896--31971 Score: 109
Period size: 27 Copynumber: 2.8 Consensus size: 28
31886 TTTTTTCACA
31896 ATCGGGGATACTCCAACCCCGTTA-ATC
1 ATCGGGGATACTCCAACCCCGTTATATC
*
31923 ATCGGGGATACTCCAACCCCGTTATTTC
1 ATCGGGGATACTCCAACCCCGTTATATC
***
31951 CGAGGGGATACTCCAACCCCG
1 ATCGGGGATACTCCAACCCCG
31972 ATTTTATCGC
Statistics
Matches: 44, Mismatches: 4, Indels: 1
0.90 0.08 0.02
Matches are distributed among these distances:
27 24 0.55
28 20 0.45
ACGTcount: A:0.24, C:0.34, G:0.21, T:0.21
Consensus pattern (28 bp):
ATCGGGGATACTCCAACCCCGTTATATC
Found at i:32039 original size:52 final size:52
Alignment explanation
Indices: 31954--32124 Score: 163
Period size: 52 Copynumber: 3.3 Consensus size: 52
31944 TTATTTCCGA
* *
31954 GGGGATACTCCAACCCCGATTTTA--TCGCTAAAACACTAATTTTTCCTCAATC
1 GGGGATACTCCAA-CCCGATTTTATTTC-CAAAAACACCAATTTTTCCTCAATC
* * * *
32006 GGGGATACTCCAATCCCGGTTTTATTTTC-AAAACGCCAA-TTTTCCTTTAATC
1 GGGGATACTCCAA-CCCGATTTTATTTCCAAAAACACCAATTTTTCC-TCAATC
* * * *
32058 GGGGATATTCCAACTCCGATTCTATTTCCAAAAATACCAATTTTT-CACAATC
1 GGGGATACTCCAAC-CCGATTTTATTTCCAAAAACACCAATTTTTCCTCAATC
*
32110 GAGGATACTCCAACC
1 GGGGATACTCCAACC
32125 TCGTTATTTC
Statistics
Matches: 97, Mismatches: 16, Indels: 13
0.77 0.13 0.10
Matches are distributed among these distances:
51 8 0.08
52 74 0.76
53 10 0.10
54 5 0.05
ACGTcount: A:0.29, C:0.27, G:0.12, T:0.32
Consensus pattern (52 bp):
GGGGATACTCCAACCCGATTTTATTTCCAAAAACACCAATTTTTCCTCAATC
Found at i:32143 original size:28 final size:28
Alignment explanation
Indices: 32107--32183 Score: 91
Period size: 28 Copynumber: 2.8 Consensus size: 28
32097 ATTTTTCACA
* * *
32107 ATCGAGGATACTCCAACCTCGTTATTTC
1 ATCGGGGATACTCCAACCCCGTTACTTC
32135 ATCGGGGATACTCCAACCCCGTTACTTC
1 ATCGGGGATACTCCAACCCCGTTACTTC
*** *
32163 CGAGGGGATACTCCAATCCCG
1 ATCGGGGATACTCCAACCCCG
32184 ATTTTTTTTT
Statistics
Matches: 42, Mismatches: 7, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
28 42 1.00
ACGTcount: A:0.23, C:0.32, G:0.19, T:0.25
Consensus pattern (28 bp):
ATCGGGGATACTCCAACCCCGTTACTTC
Found at i:37250 original size:20 final size:20
Alignment explanation
Indices: 37222--37275 Score: 74
Period size: 20 Copynumber: 2.7 Consensus size: 20
37212 GTTACAAGCA
*
37222 ATGTGTCGATACAAT-TCAT
1 ATGTATCGATACAATGTCAT
*
37241 CATGTATCGATACAATGTCCT
1 -ATGTATCGATACAATGTCAT
37262 ATGTATCGATACAA
1 ATGTATCGATACAA
37276 ACAGTGGTAG
Statistics
Matches: 31, Mismatches: 2, Indels: 2
0.89 0.06 0.06
Matches are distributed among these distances:
20 28 0.90
21 3 0.10
ACGTcount: A:0.33, C:0.19, G:0.15, T:0.33
Consensus pattern (20 bp):
ATGTATCGATACAATGTCAT
Found at i:37348 original size:19 final size:20
Alignment explanation
Indices: 37304--37357 Score: 83
Period size: 19 Copynumber: 2.8 Consensus size: 20
37294 CTGCTAGTTT
**
37304 CATGTATCGATACAATTGTC
1 CATGTATCGATACAATTGAA
37324 CATGTATCGATACAA-TGAA
1 CATGTATCGATACAATTGAA
37343 CATGTATCGATACAA
1 CATGTATCGATACAA
37358 AGCATAATGT
Statistics
Matches: 32, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
19 17 0.53
20 15 0.47
ACGTcount: A:0.37, C:0.19, G:0.15, T:0.30
Consensus pattern (20 bp):
CATGTATCGATACAATTGAA
Found at i:37369 original size:20 final size:19
Alignment explanation
Indices: 37304--37374 Score: 72
Period size: 20 Copynumber: 3.6 Consensus size: 19
37294 CTGCTAGTTT
* **
37304 CATGTATCGATACAATTGTC
1 CATGTATCGATACAA-AGAA
*
37324 CATGTATCGATACAATGAA
1 CATGTATCGATACAAAGAA
37343 CATGTATCGATACAAAGCATA
1 CATGTATCGATACAAAG-A-A
37364 -ATGTATCGATA
1 CATGTATCGATA
37375 TATTTGGGTG
Statistics
Matches: 46, Mismatches: 3, Indels: 4
0.87 0.06 0.08
Matches are distributed among these distances:
19 18 0.39
20 27 0.59
21 1 0.02
ACGTcount: A:0.38, C:0.17, G:0.15, T:0.30
Consensus pattern (19 bp):
CATGTATCGATACAAAGAA
Found at i:49106 original size:20 final size:20
Alignment explanation
Indices: 49081--49133 Score: 81
Period size: 20 Copynumber: 2.6 Consensus size: 20
49071 GTTACAAGCA
49081 ATGTATCGATACAAT-TCAT
1 ATGTATCGATACAATGTCAT
*
49100 CATGTATCGATACAATGTCCT
1 -ATGTATCGATACAATGTCAT
49121 ATGTATCGATACA
1 ATGTATCGATACA
49134 TACAGTGGTA
Statistics
Matches: 31, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
20 28 0.90
21 3 0.10
ACGTcount: A:0.34, C:0.19, G:0.13, T:0.34
Consensus pattern (20 bp):
ATGTATCGATACAATGTCAT
Found at i:49207 original size:19 final size:19
Alignment explanation
Indices: 49163--49235 Score: 76
Period size: 20 Copynumber: 3.7 Consensus size: 19
49153 CTGCCAGTTT
* **
49163 CATGTATTGATACAATTGTC
1 CATGTATCGATACAA-TGAA
49183 CATGTATCGATACAATGAA
1 CATGTATCGATACAATGAA
*
49202 CATGTATCGATACAAAGCATA
1 CATGTATCGATACAATG-A-A
49223 -ATGTATCGATACA
1 CATGTATCGATACA
49236 TCTAGGTGTG
Statistics
Matches: 47, Mismatches: 4, Indels: 4
0.85 0.07 0.07
Matches are distributed among these distances:
19 18 0.38
20 28 0.60
21 1 0.02
ACGTcount: A:0.38, C:0.16, G:0.15, T:0.30
Consensus pattern (19 bp):
CATGTATCGATACAATGAA
Found at i:50435 original size:21 final size:21
Alignment explanation
Indices: 50407--50460 Score: 67
Period size: 20 Copynumber: 2.6 Consensus size: 21
50397 TAAATAAATA
50407 TATCGATACATTTACT-ATTTG
1 TATCGATACATTTACTCA-TTG
* *
50428 TATTGATACA-TTATTCATTG
1 TATCGATACATTTACTCATTG
50448 TATCGATACATTT
1 TATCGATACATTT
50461 GGGTCAAAAG
Statistics
Matches: 28, Mismatches: 3, Indels: 4
0.80 0.09 0.11
Matches are distributed among these distances:
20 16 0.57
21 12 0.43
ACGTcount: A:0.30, C:0.13, G:0.09, T:0.48
Consensus pattern (21 bp):
TATCGATACATTTACTCATTG
Found at i:54709 original size:2 final size:2
Alignment explanation
Indices: 54702--54773 Score: 57
Period size: 2 Copynumber: 37.5 Consensus size: 2
54692 AAATTAACAT
* *
54702 TA TA TA TA TT TA CA TA T- TA TA TA TA T- TA TA TCA TA TA T- TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T-A TA TA TA TA
54742 TA TA GTA TA TCA TA TA T- TA TA TA T- TA -A TA TA T
1 TA TA -TA TA T-A TA TA TA TA TA TA TA TA TA TA TA T
54774 TTCGTGTCTA
Statistics
Matches: 57, Mismatches: 4, Indels: 18
0.72 0.05 0.23
Matches are distributed among these distances:
1 6 0.11
2 45 0.79
3 6 0.11
ACGTcount: A:0.43, C:0.04, G:0.01, T:0.51
Consensus pattern (2 bp):
TA
Found at i:54726 original size:19 final size:19
Alignment explanation
Indices: 54702--54765 Score: 76
Period size: 19 Copynumber: 3.3 Consensus size: 19
54692 AAATTAACAT
* *
54702 TATATATATTTACATATTA
1 TATATATATTCATATATTA
54721 TATATATTATATCATATATTA
1 TATATA-TAT-TCATATATTA
54742 TATAGTATA-TCATATATTA
1 TATA-TATATTCATATATTA
54761 TATAT
1 TATAT
54766 TAATATATTT
Statistics
Matches: 40, Mismatches: 2, Indels: 7
0.82 0.04 0.14
Matches are distributed among these distances:
18 1 0.03
19 20 0.50
20 3 0.08
21 14 0.35
22 2 0.05
ACGTcount: A:0.42, C:0.05, G:0.02, T:0.52
Consensus pattern (19 bp):
TATATATATTCATATATTA
Found at i:54731 original size:7 final size:7
Alignment explanation
Indices: 54704--54774 Score: 58
Period size: 7 Copynumber: 10.1 Consensus size: 7
54694 ATTAACATTA
54704 TATATATT
1 TATATA-T
*
54712 TACATAT
1 TATATAT
54719 TATATA-
1 TATATAT
54725 TATTATAT
1 TA-TATAT
*
54733 CATATAT
1 TATATAT
54740 TATATA-
1 TATATAT
*
54746 -GTATAT
1 TATATAT
*
54752 CATATAT
1 TATATAT
54759 TATATAT
1 TATATAT
54766 TAATATAT
1 T-ATATAT
54774 T
1 T
54775 TCGTGTCTAT
Statistics
Matches: 51, Mismatches: 7, Indels: 10
0.75 0.10 0.15
Matches are distributed among these distances:
5 4 0.08
6 2 0.04
7 32 0.63
8 13 0.25
ACGTcount: A:0.42, C:0.04, G:0.01, T:0.52
Consensus pattern (7 bp):
TATATAT
Found at i:56450 original size:19 final size:19
Alignment explanation
Indices: 56426--56478 Score: 88
Period size: 19 Copynumber: 2.8 Consensus size: 19
56416 TTCAAAATAT
*
56426 CTCTCCCCCTTTTTATTAA
1 CTCTCCCCCTTTTTATCAA
*
56445 CTCTCCCTCTTTTTATCAA
1 CTCTCCCCCTTTTTATCAA
56464 CTCTCCCCCTTTTTA
1 CTCTCCCCCTTTTTA
56479 CAAATTCATT
Statistics
Matches: 31, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
19 31 1.00
ACGTcount: A:0.13, C:0.40, G:0.00, T:0.47
Consensus pattern (19 bp):
CTCTCCCCCTTTTTATCAA
Found at i:59730 original size:104 final size:107
Alignment explanation
Indices: 59577--59953 Score: 261
Period size: 109 Copynumber: 3.5 Consensus size: 107
59567 CGTAATTTGC
* * * * ** *
59577 AAATGAATTATCTTATATAAA-AGCATTCGTACGCCGCTTTATGGTTCTAGATAATGACCTA-TT
1 AAATGAATTATCTTATATAAAGGGCGTTCGTACGCCACTTTACGACTCTAGACAATGACCTATTT
* *
59640 -GCT-AATCTTTTGGTG-CCTAAAT-TTACGTAATTAATGCAAA
66 GGCTCAATCTTTTGGTGATC-AAATATTACGTAAGTAATGC-AA
* * **
59680 AAATGAATTATCTTATATAAAGGGCGTTCGTATGCCACTTTACGACTCTAGACGATGATTTATTT
1 AAATGAATTATCTTATATAAAGGGCGTTCGTACGCCACTTTACGACTCTAGACAATGACCTATTT
* * *
59745 CGGGGTCAATTTTTTGGTGATCGAATATTACGTAAGTAATGCAA
66 --GGCTCAATCTTTTGGTGATCAAATATTACGTAAGTAATGCAA
* * * * * **
59789 AAATGAGTTGTCCTATGTAAAGGACGTTCGTACGCCACTTTACGACTCTAGA-AGATGATTTATT
1 AAATGAATTATCTTATATAAAGGGCGTTCGTACGCCACTTTACGACTCTAGACA-ATGACCTATT
** * * *
59853 TCGGGGC-CAATCTTTTGGTGCCCGAATATTATGTAA-TTATGC-A
65 T---GGCTCAATCTTTTGGTGATCAAATATTACGTAAGTAATGCAA
* ** * * * * * * * *
59896 AAATAAATTGCCCTATATAAAAGGCATTCGTACACCGCTTTATGACTTTAGACTATGA
1 AAATGAATTATCTTATATAAAGGGCGTTCGTACGCCACTTTACGACTCTAGACAATGA
59954 TTTATTTTGG
Statistics
Matches: 221, Mismatches: 42, Indels: 18
0.79 0.15 0.06
Matches are distributed among these distances:
103 21 0.10
104 29 0.13
105 2 0.01
107 46 0.21
108 7 0.03
109 98 0.44
110 18 0.08
ACGTcount: A:0.31, C:0.16, G:0.18, T:0.35
Consensus pattern (107 bp):
AAATGAATTATCTTATATAAAGGGCGTTCGTACGCCACTTTACGACTCTAGACAATGACCTATTT
GGCTCAATCTTTTGGTGATCAAATATTACGTAAGTAATGCAA
Found at i:59810 original size:109 final size:108
Alignment explanation
Indices: 59643--59960 Score: 372
Period size: 109 Copynumber: 2.9 Consensus size: 108
59633 ACCTATTGCT
* * *
59643 AATCTTTTGGTG-CCTAA-ATTTACGTAATTAATGCAAAAAATGAATTATCTTATATAAAGGGCG
1 AATCTTTTGGTGACCGAATA-TTACGTAA-TAATGC-AAAAATGAATTGTCCTATATAAAGGGCG
* *
59706 TTCGTATGCCACTTTACGACTCTAGACGATGATTTATTTCGGGGTC
63 TTCGTACGCCACTTTACGACTCTAGACGATGATTTATTTCGGGGCC
* * * * *
59752 AATTTTTTGGTGATCGAATATTACGTAAGTAATGCAAAAATGAGTTGTCCTATGTAAAGGACGTT
1 AATCTTTTGGTGACCGAATATTACGTAA-TAATGCAAAAATGAATTGTCCTATATAAAGGGCGTT
*
59817 CGTACGCCACTTTACGACTCTAGAAGATGATTTATTTCGGGGCC
65 CGTACGCCACTTTACGACTCTAGACGATGATTTATTTCGGGGCC
* * * * * * *
59861 AATCTTTTGGTGCCCGAATATTATGTAATTATGC-AAAATAAATTGCCCTATATAAAAGGCATTC
1 AATCTTTTGGTGACCGAATATTACGTAATAATGCAAAAATGAATTGTCCTATATAAAGGGCGTTC
* * * * *
59925 GTACACCGCTTTATGACTTTAGACTATGATTTATTT
66 GTACGCCACTTTACGACTCTAGACGATGATTTATTT
59961 TGGAGAAAAT
Statistics
Matches: 177, Mismatches: 30, Indels: 6
0.83 0.14 0.03
Matches are distributed among these distances:
107 53 0.30
108 5 0.03
109 101 0.57
110 17 0.10
111 1 0.01
ACGTcount: A:0.31, C:0.16, G:0.18, T:0.36
Consensus pattern (108 bp):
AATCTTTTGGTGACCGAATATTACGTAATAATGCAAAAATGAATTGTCCTATATAAAGGGCGTTC
GTACGCCACTTTACGACTCTAGACGATGATTTATTTCGGGGCC
Found at i:60694 original size:14 final size:13
Alignment explanation
Indices: 60677--60706 Score: 51
Period size: 14 Copynumber: 2.2 Consensus size: 13
60667 TTTTTTTTCC
60677 TTTTTCCTTTTTGT
1 TTTTTCCTTTTT-T
60691 TTTTTCCTTTTTT
1 TTTTTCCTTTTTT
60704 TTT
1 TTT
60707 CTTTCTCCTT
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 4 0.25
14 12 0.75
ACGTcount: A:0.00, C:0.13, G:0.03, T:0.83
Consensus pattern (13 bp):
TTTTTCCTTTTTT
Found at i:61707 original size:28 final size:28
Alignment explanation
Indices: 61667--61882 Score: 93
Period size: 28 Copynumber: 7.9 Consensus size: 28
61657 CCCAACGAGG
* * * *
61667 TGCCAGCTTATGTGGGTTTTGACTTAAA
1 TGCCAACTAATGTGGGCTTTAACTTAAA
**
61695 TGCCAACTAATGTGGGCTTTAACTTAGC
1 TGCCAACTAATGTGGGCTTTAACTTAAA
* * * **
61723 TGCTAGCTAGTGTGGGC-TT-ACTTGTA
1 TGCCAACTAATGTGGGCTTTAACTTAAA
* * * ***
61749 TGCTAGCTAGTGTGGG--TT-ACTTGTG
1 TGCCAACTAATGTGGGCTTTAACTTAAA
* * * * ***
61774 TGCCAGCTAGTGTTGGCTTTGACTTGTG
1 TGCCAACTAATGTGGGCTTTAACTTAAA
* * * *
61802 TGTC-ACAAATGTGGGCTTTGACTTACA
1 TGCCAACTAATGTGGGCTTTAACTTAAA
* * **
61829 TGCCAACGAATGTGGGCTTTGACTTACG
1 TGCCAACTAATGTGGGCTTTAACTTAAA
*
61857 TGCCAACGAATGTGGGCTTTAACTTA
1 TGCCAACTAATGTGGGCTTTAACTTA
61883 CGCGCCAGTG
Statistics
Matches: 157, Mismatches: 27, Indels: 8
0.82 0.14 0.04
Matches are distributed among these distances:
25 22 0.14
26 20 0.13
27 23 0.15
28 92 0.59
ACGTcount: A:0.20, C:0.18, G:0.27, T:0.35
Consensus pattern (28 bp):
TGCCAACTAATGTGGGCTTTAACTTAAA
Found at i:61752 original size:26 final size:26
Alignment explanation
Indices: 61723--61792 Score: 106
Period size: 25 Copynumber: 2.7 Consensus size: 26
61713 TTAACTTAGC
61723 TGCTAGCTAGTGTGGGCTTACTTGTA
1 TGCTAGCTAGTGTGGGCTTACTTGTA
*
61749 TGCTAGCTAGTGTGGG-TTACTTGTG
1 TGCTAGCTAGTGTGGGCTTACTTGTA
* *
61774 TGCCAGCTAGTGTTGGCTT
1 TGCTAGCTAGTGTGGGCTT
61793 TGACTTGTGT
Statistics
Matches: 40, Mismatches: 3, Indels: 2
0.89 0.07 0.04
Matches are distributed among these distances:
25 22 0.55
26 18 0.45
ACGTcount: A:0.13, C:0.16, G:0.33, T:0.39
Consensus pattern (26 bp):
TGCTAGCTAGTGTGGGCTTACTTGTA
Found at i:61882 original size:56 final size:56
Alignment explanation
Indices: 61809--62365 Score: 339
Period size: 56 Copynumber: 10.2 Consensus size: 56
61799 GTGTGTCACA
* *
61809 AATGTGGGCTTTGACTTACATGCCAACGAATGTGGGCTTTGACTTACGTGCCAACG
1 AATGTGGGCTTTAACTTACGTGCCAACGAATGTGGGCTTTGACTTACGTGCCAACG
* ** * * * * *
61865 AATGTGGGCTTTAACTTACGCGCCAGTGAATATGGGCTTAGAGTTACGTGCTAGCG
1 AATGTGGGCTTTAACTTACGTGCCAACGAATGTGGGCTTTGACTTACGTGCCAACG
** * * * *
61921 AATGTGGG-TTTAGA-TTGTGTGCCAATGCA--T--G--TTGGCTTACGTGCCAATG
1 AATGTGGGCTTTA-ACTTACGTGCCAACGAATGTGGGCTTTGACTTACGTGCCAACG
* * * * * *
61970 AATGTAGGC-TTAGA-TTCATGTGCCATCTAATGTGGGCTTTGACTTACGTACCGACG
1 AATGTGGGCTTTA-ACTT-ACGTGCCAACGAATGTGGGCTTTGACTTACGTGCCAACG
* * * * ** * ** **
62026 AAAGTAGGCTTTGACTTACGTGCTAGTGAAAGTGGGCTTAAACTTACGTGCCAGTG
1 AATGTGGGCTTTAACTTACGTGCCAACGAATGTGGGCTTTGACTTACGTGCCAACG
* * * * *
62082 AATGTGGG-TTTAGACTTACGTGTCAACGAATGTAGGCTTTGACTCATGTGCCAATG
1 AATGTGGGCTTTA-ACTTACGTGCCAACGAATGTGGGCTTTGACTTACGTGCCAACG
* * * * * *
62138 AATGTGGGCTTCAAC-T---TGCCAACGATTGTGGGCTTCGA-TTCATGTGCCATCT
1 AATGTGGGCTTTAACTTACGTGCCAACGAATGTGGGCTTTGACTT-ACGTGCCAACG
* * * * ** * **
62190 AATGTGGGCTTTGACTTACGTGCTAGCGAAAGTGGGCTTAAACTTACGTGCTAGTG
1 AATGTGGGCTTTAACTTACGTGCCAACGAATGTGGGCTTTGACTTACGTGCCAACG
* * **
62246 AATGTGGGC-TTAGACTTACGTGCCAATGAATGTGGGCTTAGA-TTGTGTGCCAAC-
1 AATGTGGGCTTTA-ACTTACGTGCCAACGAATGTGGGCTTTGACTTACGTGCCAACG
* * * *
62300 ACAAGTGGGCTTTGACTCATGTGCCAACGAATGTGGGCTTTGACTTA--TGCCAAC-
1 A-ATGTGGGCTTTAACTTACGTGCCAACGAATGTGGGCTTTGACTTACGTGCCAACG
62354 AAGTGTGGGCTT
1 AA-TGTGGGCTT
62366 CCTTTTGATA
Statistics
Matches: 377, Mismatches: 100, Indels: 50
0.72 0.19 0.09
Matches are distributed among these distances:
49 26 0.07
50 8 0.02
51 2 0.01
52 40 0.11
53 3 0.01
54 18 0.05
55 59 0.16
56 212 0.56
57 9 0.02
ACGTcount: A:0.23, C:0.18, G:0.28, T:0.31
Consensus pattern (56 bp):
AATGTGGGCTTTAACTTACGTGCCAACGAATGTGGGCTTTGACTTACGTGCCAACG
Found at i:61883 original size:28 final size:28
Alignment explanation
Indices: 61809--62365 Score: 298
Period size: 28 Copynumber: 20.4 Consensus size: 28
61799 GTGTGTCACA
* *
61809 AATGTGGGCTTTGACTTACATGCCAACG
1 AATGTGGGCTTTAACTTACGTGCCAACG
*
61837 AATGTGGGCTTTGACTTACGTGCCAACG
1 AATGTGGGCTTTAACTTACGTGCCAACG
* **
61865 AATGTGGGCTTTAACTTACGCGCCAGTG
1 AATGTGGGCTTTAACTTACGTGCCAACG
* * * *
61893 AATATGGGC-TTAGAGTTACGTGCTAGCG
1 AATGTGGGCTTTA-ACTTACGTGCCAACG
** *
61921 AATGTGGG-TTTAGA-TTGTGTGCCAATG
1 AATGTGGGCTTTA-ACTTACGTGCCAACG
* * *
61948 CATGTTGG------CTTACGTGCCAATG
1 AATGTGGGCTTTAACTTACGTGCCAACG
* * * *
61970 AATGTAGGC-TTAGA-TTCATGTGCCATCT
1 AATGTGGGCTTTA-ACTT-ACGTGCCAACG
* * *
61998 AATGTGGGCTTTGACTTACGTACCGACG
1 AATGTGGGCTTTAACTTACGTGCCAACG
* * * * **
62026 AAAGTAGGCTTTGACTTACGTGCTAGTG
1 AATGTGGGCTTTAACTTACGTGCCAACG
* * **
62054 AAAGTGGGCTTAAACTTACGTGCCAGTG
1 AATGTGGGCTTTAACTTACGTGCCAACG
*
62082 AATGTGGG-TTTAGACTTACGTGTCAACG
1 AATGTGGGCTTTA-ACTTACGTGCCAACG
* * * * *
62110 AATGTAGGCTTTGACTCATGTGCCAATG
1 AATGTGGGCTTTAACTTACGTGCCAACG
*
62138 AATGTGGGCTTCAAC-T---TGCCAACG
1 AATGTGGGCTTTAACTTACGTGCCAACG
* ** * * *
62162 ATTGTGGGCTTCGA-TTCATGTGCCATCT
1 AATGTGGGCTTTAACTT-ACGTGCCAACG
* * *
62190 AATGTGGGCTTTGACTTACGTGCTAGCG
1 AATGTGGGCTTTAACTTACGTGCCAACG
* * * **
62218 AAAGTGGGCTTAAACTTACGTGCTAGTG
1 AATGTGGGCTTTAACTTACGTGCCAACG
*
62246 AATGTGGGC-TTAGACTTACGTGCCAATG
1 AATGTGGGCTTTA-ACTTACGTGCCAACG
**
62274 AATGTGGGC-TTAGA-TTGTGTGCCAAC-
1 AATGTGGGCTTTA-ACTTACGTGCCAACG
* * * *
62300 ACAAGTGGGCTTTGACTCATGTGCCAACG
1 A-ATGTGGGCTTTAACTTACGTGCCAACG
*
62329 AATGTGGGCTTTGACTTA--TGCCAAC-
1 AATGTGGGCTTTAACTTACGTGCCAACG
62354 AAGTGTGGGCTT
1 AA-TGTGGGCTT
62366 CCTTTTGATA
Statistics
Matches: 416, Mismatches: 87, Indels: 54
0.75 0.16 0.10
Matches are distributed among these distances:
22 17 0.04
24 20 0.05
25 2 0.00
26 17 0.04
27 41 0.10
28 309 0.74
29 10 0.02
ACGTcount: A:0.23, C:0.18, G:0.28, T:0.31
Consensus pattern (28 bp):
AATGTGGGCTTTAACTTACGTGCCAACG
Found at i:61964 original size:22 final size:22
Alignment explanation
Indices: 61939--61981 Score: 68
Period size: 22 Copynumber: 2.0 Consensus size: 22
61929 TTTAGATTGT
* *
61939 GTGCCAATGCATGTTGGCTTAC
1 GTGCCAATGAATGTAGGCTTAC
61961 GTGCCAATGAATGTAGGCTTA
1 GTGCCAATGAATGTAGGCTTA
61982 GATTCATGTG
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
22 19 1.00
ACGTcount: A:0.23, C:0.19, G:0.28, T:0.30
Consensus pattern (22 bp):
GTGCCAATGAATGTAGGCTTAC
Found at i:62249 original size:136 final size:138
Alignment explanation
Indices: 62057--62346 Score: 329
Period size: 136 Copynumber: 2.1 Consensus size: 138
62047 GCTAGTGAAA
** * * * * *
62057 GTGGGCTTAAACTTACGTGCCAGTGAATGTGGGTTTAGACTTACGTGTCAACGAATGTAGGCTTT
1 GTGGGCTTTGACTTACGTGCCAGCGAAAGTGGGCTTAAACTTACGTGTCAACGAATGTAGGCTTA
* ** *
62122 GACTCATGTGCCAATGAATGTGGGCTTCA-A-CT-TGCCAACGA-TTGTGGGCTTCGATTCATGT
66 GACTCACGTGCCAATGAATGTGGGCTT-AGATCTGTGCCAAC-ACAAGTGGGCTTCGACTCATGT
* *
62183 GCCATCTAAT
129 GCCAACGAAT
* ** *
62193 GTGGGCTTTGACTTACGTGCTAGCGAAAGTGGGCTTAAACTTACGTG-CTAGTGAATGTGGGCTT
1 GTGGGCTTTGACTTACGTGCCAGCGAAAGTGGGCTTAAACTTACGTGTC-AACGAATGTAGGCTT
* * *
62257 AGACTTACGTGCCAATGAATGTGGGCTTAGATTGTGTGCCAACACAAGTGGGCTTTGACTCATGT
65 AGACTCACGTGCCAATGAATGTGGGCTTAGA-TCTGTGCCAACACAAGTGGGCTTCGACTCATGT
62322 GCCAACGAAT
129 GCCAACGAAT
62332 GTGGGCTTTGACTTA
1 GTGGGCTTTGACTTA
62347 TGCCAACAAG
Statistics
Matches: 128, Mismatches: 20, Indels: 9
0.82 0.13 0.06
Matches are distributed among these distances:
135 2 0.02
136 78 0.61
138 2 0.02
139 46 0.36
ACGTcount: A:0.23, C:0.18, G:0.28, T:0.31
Consensus pattern (138 bp):
GTGGGCTTTGACTTACGTGCCAGCGAAAGTGGGCTTAAACTTACGTGTCAACGAATGTAGGCTTA
GACTCACGTGCCAATGAATGTGGGCTTAGATCTGTGCCAACACAAGTGGGCTTCGACTCATGTGC
CAACGAAT
Found at i:73601 original size:107 final size:108
Alignment explanation
Indices: 73277--73656 Score: 356
Period size: 107 Copynumber: 3.5 Consensus size: 108
73267 TAGAGAGACC
** * * * * **
73277 TATTTCGAGGCCAATCCCTTGGTATCCAAGTATTGCGTAATT-T--ACAAATGAATTATCTTATA
1 TATTTCGAGGCCAATCCCTTGGTGCCCAAATATTACATAATTATGAAAAAATGAATTGCCTTATA
* *
73339 TAAAGGGCATTCGTACACCGCTTTACGACTCTAGATGATGATT
66 TAAAGGGCATTCGTACGCCGCTTTACGACTCTAGACGATGATT
* * * * * * *
73382 TATTTCAAGGTCAATCTCTTGGTGACCGAATATTACATAAGTAATGCAAAAAATGAGTTGTCC-T
1 TATTTCGAGGCCAATCCCTTGGTGCCCAAATATTACATAA-TTATG-AAAAAATGAATTG-CCTT
* ** * *
73446 ATGTAAAGGGTGTTCGTATGCCACTTTACGACTCTAGACGATGATT
63 ATATAAAGGGCATTCGTACGCCGCTTTACGACTCTAGACGATGATT
* **
73492 TATTTCGAGGCCAATCTCTTGGTGCCCAAATATTATGTAATTAT-AAAAAATGAATTGCCTTATA
1 TATTTCGAGGCCAATCCCTTGGTGCCCAAATATTACATAATTATGAAAAAATGAATTGCCTTATA
* * * * *
73556 TAAAAGGCATCCGTACGCTGCTTTACGACTTTAGACGATTATT
66 TAAAGGGCATTCGTACGCCGCTTTACGACTCTAGACGATGATT
* * * ** * *
73599 TATTTTGGGGCCAATCCCTTAGTGCCTGAATATTATATAATTAATGTAAAAATGAATT
1 TATTTCGAGGCCAATCCCTTGGTGCCCAAATATTACATAATT-ATGAAAAAATGAATT
73657 CTAAATAGGC
Statistics
Matches: 219, Mismatches: 47, Indels: 14
0.78 0.17 0.05
Matches are distributed among these distances:
105 31 0.14
106 3 0.01
107 85 0.39
108 2 0.01
109 14 0.06
110 83 0.38
111 1 0.00
ACGTcount: A:0.31, C:0.17, G:0.17, T:0.34
Consensus pattern (108 bp):
TATTTCGAGGCCAATCCCTTGGTGCCCAAATATTACATAATTATGAAAAAATGAATTGCCTTATA
TAAAGGGCATTCGTACGCCGCTTTACGACTCTAGACGATGATT
Found at i:80792 original size:10 final size:10
Alignment explanation
Indices: 80777--80803 Score: 54
Period size: 10 Copynumber: 2.7 Consensus size: 10
80767 AATGCTTTGA
80777 TTTCTTGATG
1 TTTCTTGATG
80787 TTTCTTGATG
1 TTTCTTGATG
80797 TTTCTTG
1 TTTCTTG
80804 TGAGTTCTTG
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 17 1.00
ACGTcount: A:0.07, C:0.11, G:0.19, T:0.63
Consensus pattern (10 bp):
TTTCTTGATG
Found at i:83046 original size:54 final size:54
Alignment explanation
Indices: 82977--83116 Score: 253
Period size: 54 Copynumber: 2.6 Consensus size: 54
82967 ATGAATTTTG
*
82977 ATCACTCAAATTAATATCGGGTTTGATAGAAAAAAAGGGGGAACAAGTAAGAGA
1 ATCACTCAAATTAATATCGGGTTTGATAGAAAAAAAGGGAGAACAAGTAAGAGA
* *
83031 ATCACTCAAATTAATATCGAGTTCGATAGAAAAAAAGGGAGAACAAGTAAGAGA
1 ATCACTCAAATTAATATCGGGTTTGATAGAAAAAAAGGGAGAACAAGTAAGAGA
83085 ATCACTCAAATTAATATCGGGTTTGATAGAAA
1 ATCACTCAAATTAATATCGGGTTTGATAGAAA
83117 GAATAGAAAA
Statistics
Matches: 81, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
54 81 1.00
ACGTcount: A:0.46, C:0.11, G:0.21, T:0.22
Consensus pattern (54 bp):
ATCACTCAAATTAATATCGGGTTTGATAGAAAAAAAGGGAGAACAAGTAAGAGA
Found at i:84107 original size:21 final size:21
Alignment explanation
Indices: 84083--84158 Score: 66
Period size: 21 Copynumber: 3.7 Consensus size: 21
84073 TTCTAAAATT
84083 TGTATCGATACAAACAATAAA
1 TGTATCGATACAAACAATAAA
* * *
84104 TGTATCGATACATA-AGTGAA
1 TGTATCGATACAAACAATAAA
* ** *
84124 TATATCGATACATGC-CTAAAA
1 TGTATCGATACAAACAAT-AAA
84145 TGTATCGATACAAA
1 TGTATCGATACAAA
84159 ATCACCCTGC
Statistics
Matches: 43, Mismatches: 10, Indels: 4
0.75 0.18 0.07
Matches are distributed among these distances:
20 17 0.40
21 26 0.60
ACGTcount: A:0.45, C:0.14, G:0.13, T:0.28
Consensus pattern (21 bp):
TGTATCGATACAAACAATAAA
Found at i:84829 original size:24 final size:22
Alignment explanation
Indices: 84798--84842 Score: 56
Period size: 23 Copynumber: 2.0 Consensus size: 22
84788 AAAAAAAAAT
84798 TATTCCATAAG-TCTCCAAAACCC
1 TATTCCAT-AGCTC-CCAAAACCC
84821 TATTCCCATAGCTCCCAAAACC
1 TATT-CCATAGCTCCCAAAACC
84843 ACCACTAGAA
Statistics
Matches: 20, Mismatches: 0, Indels: 4
0.83 0.00 0.17
Matches are distributed among these distances:
23 14 0.70
24 6 0.30
ACGTcount: A:0.33, C:0.38, G:0.04, T:0.24
Consensus pattern (22 bp):
TATTCCATAGCTCCCAAAACCC
Found at i:87001 original size:157 final size:156
Alignment explanation
Indices: 86683--87104 Score: 530
Period size: 157 Copynumber: 2.7 Consensus size: 156
86673 TATGATATAG
* * *
86683 AATTTTTCCTCTAGGGGATACTCCAAAT-CTCGTTATTTCTGA-GAGGATACTCCAATCCAATTT
1 AATTTTTCATCTCGGGGATACTCC-AATCCT-GTTATTTCAGAGGA-GATACTCCAATCCAATTT
* * *
86746 CTATTTTTGAAATATTAAAATTTTCATCTCGGCGATACTCCAACCCTGTTATTTCTAAGGGATAC
63 -TATTTTTGAAATATTAAAATTTTCATCTCGGGGATACTCCAACCCTATTATTTCTAAAGGATAC
* * *
86811 TCCAACTCTATTTTTATTTTTGAAATATTA
127 TCCAACCCCATTTTTATTTTTGAAATACTA
* * *
86841 AATTTTTCATTTCGGGGATACTCCAATCCTGTTATTTTC-GAGGAGATATTCCAATCTC-GTTTT
1 AATTTTTCATCTCGGGGATACTCCAATCCTGTTA-TTTCAGAGGAGATACTCCAATC-CAATTTT
* * * *
86904 ATTTCTAAAATATTAAAATTTTCATCTCGGGGATACTCCGACCCTATTATTTTTGAAAGGATACT
64 ATTTTTGAAATATTAAAATTTTCATCTCGGGGATACTCCAACCCTATTATTTCT-AAAGGATACT
86969 CCAACCCCATTTTTATTTTTG-AATCACTA
128 CCAACCCCATTTTTATTTTTGAAAT-ACTA
* * * * *
86998 AATTTTTTATCTCGGGGATACTCTAACCCTGTTATTTCAGAGGGGATACTCCAATCACATTTTTA
1 AATTTTTCATCTCGGGGATACTCCAATCCTGTTATTTCAGAGGAGATACTCCAATC-CAATTTTA
*
87063 TTTTTGAAATATTAAAATTTTCATCTTGGGGATACTCCAACC
65 TTTTTGAAATATTAAAATTTTCATCTCGGGGATACTCCAACC
87105 TTGTTTTTAT
Statistics
Matches: 229, Mismatches: 27, Indels: 16
0.84 0.10 0.06
Matches are distributed among these distances:
156 56 0.24
157 100 0.44
158 73 0.32
ACGTcount: A:0.28, C:0.19, G:0.12, T:0.40
Consensus pattern (156 bp):
AATTTTTCATCTCGGGGATACTCCAATCCTGTTATTTCAGAGGAGATACTCCAATCCAATTTTAT
TTTTGAAATATTAAAATTTTCATCTCGGGGATACTCCAACCCTATTATTTCTAAAGGATACTCCA
ACCCCATTTTTATTTTTGAAATACTA
Found at i:87020 original size:79 final size:79
Alignment explanation
Indices: 86686--87109 Score: 475
Period size: 78 Copynumber: 5.4 Consensus size: 79
86676 GATATAGAAT
* * ** * *
86686 TTTTCCTCTAGGGGATACTCCAAATCTCGTTATTTCTG-AGAGGATACTCCAATCCAATTTCTAT
1 TTTTCATCTCGGGGATACTCCAACCCT-GTTATTTCTGAAG-GGATACTCCAATCCCATTTTTAT
86750 TTTTGAAATATTAAAA
64 TTTTGAAATATTAAAA
* *
86766 TTTTCATCTCGGCGATACTCCAACCCTGTTATTTCT-AAGGGATACTCCAA-CTCTATTTTTATT
1 TTTTCATCTCGGGGATACTCCAACCCTGTTATTTCTGAAGGGATACTCCAATC-CCATTTTTATT
*
86829 TTTGAAATATTAAAT
65 TTTGAAATATTAAAA
* * * * *
86844 TTTTCATTTCGGGGATACTCCAATCCTGTTATTT-TCG-AGGAGATATTCCAATCTC-GTTTTAT
1 TTTTCATCTCGGGGATACTCCAACCCTGTTATTTCT-GAAGG-GATACTCCAATCCCATTTTTAT
* *
86906 TTCTAAAATATTAAAA
64 TTTTGAAATATTAAAA
* * * * *
86922 TTTTCATCTCGGGGATACTCCGACCCTATTATTTTTGAAAGGATACTCCAACCCCATTTTTATTT
1 TTTTCATCTCGGGGATACTCCAACCCTGTTATTTCTGAAGGGATACTCCAATCCCATTTTTATTT
* *
86987 TTG-AATCACTAAAT
66 TTGAAAT-ATTAAAA
* * * * *
87001 TTTTTATCTCGGGGATACTCTAACCCTGTTATTTCAGAGGGGATACTCCAATCACATTTTTATTT
1 TTTTCATCTCGGGGATACTCCAACCCTGTTATTTCTGAAGGGATACTCCAATCCCATTTTTATTT
87066 TTGAAATATTAAAA
66 TTGAAATATTAAAA
* *
87080 TTTTCATCTTGGGGATACTCCAACCTTGTT
1 TTTTCATCTCGGGGATACTCCAACCCTGTT
87110 TTTATTTTCA
Statistics
Matches: 286, Mismatches: 47, Indels: 23
0.80 0.13 0.06
Matches are distributed among these distances:
77 2 0.01
78 132 0.46
79 126 0.44
80 26 0.09
ACGTcount: A:0.27, C:0.19, G:0.12, T:0.41
Consensus pattern (79 bp):
TTTTCATCTCGGGGATACTCCAACCCTGTTATTTCTGAAGGGATACTCCAATCCCATTTTTATTT
TTGAAATATTAAAA
Found at i:87097 original size:51 final size:51
Alignment explanation
Indices: 87039--87137 Score: 144
Period size: 51 Copynumber: 1.9 Consensus size: 51
87029 TTATTTCAGA
* **
87039 GGGGATACTCCAATCACATTTTTATTTTTGAAATATTAAAATTTTCATCTT
1 GGGGATACTCCAACCACATTTTTATTTTCAAAATATTAAAATTTTCATCTT
***
87090 GGGGATACTCCAACCTTGTTTTTATTTTCAAAATATTAAAATTTTCAT
1 GGGGATACTCCAACCACATTTTTATTTTCAAAATATTAAAATTTTCAT
87138 AATCGAGGTA
Statistics
Matches: 42, Mismatches: 6, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
51 42 1.00
ACGTcount: A:0.31, C:0.14, G:0.10, T:0.44
Consensus pattern (51 bp):
GGGGATACTCCAACCACATTTTTATTTTCAAAATATTAAAATTTTCATCTT
Found at i:87386 original size:22 final size:22
Alignment explanation
Indices: 87361--87408 Score: 53
Period size: 22 Copynumber: 2.2 Consensus size: 22
87351 TGTCCCTCAT
* *
87361 TTTTATGT-ATTTTGTGCATTTA
1 TTTTATGTAAATTTGTACA-TTA
*
87383 TTTTGTGTAAATTTGTACATTA
1 TTTTATGTAAATTTGTACATTA
87405 TTTT
1 TTTT
87409 CTTTTTCGTT
Statistics
Matches: 22, Mismatches: 3, Indels: 2
0.81 0.11 0.07
Matches are distributed among these distances:
22 14 0.64
23 8 0.36
ACGTcount: A:0.21, C:0.04, G:0.12, T:0.62
Consensus pattern (22 bp):
TTTTATGTAAATTTGTACATTA
Found at i:93461 original size:62 final size:62
Alignment explanation
Indices: 93288--94229 Score: 1154
Period size: 62 Copynumber: 15.3 Consensus size: 62
93278 CTCCTTTTTG
* * * * *
93288 TTTTTCCTTTTTAAAGCCTACATGAGTTGATGGCACCTTTTAGTCCTCAAAAAGCAAGATGCC
1 TTTTT-CTTTTTAAAGCCCACACGAGTTGGTGGCACCTTTTAGTCCTCAAAGAGCAGGATGCC
* * * * * *
93351 TTTTCCTTTTTAAAGCCCATACAAG-T--TGGCACTTTTTAGTCCTCAAAGAGTAGGATGTC
1 TTTTTCTTTTTAAAGCCCACACGAGTTGGTGGCACCTTTTAGTCCTCAAAGAGCAGGATGCC
* * * * * * *
93410 TGTTCCTTTTTAAAGCCCACATGGGTTGGTGGCACCTTTTAGTCCTCAAAGAGTAGCA--CAT
1 TTTTTCTTTTTAAAGCCCACACGAGTTGGTGGCACCTTTTAGTCCTCAAAGAGCAGGATGC-C
* * * * *
93471 TTTTTCCTTTTTAAAGCCTACACGAGTTGATAGCACCTTTTTAGTCCTCAAAAAGTAGGATGCC
1 TTTTT-CTTTTTAAAGCCCACACGAGTTGGTGGCACC-TTTTAGTCCTCAAAGAGCAGGATGCC
* * * * * *
93535 TTTTCCTTGTTAAAGCCTACACGAGTTGGTGGCACCTTTTAGTCCTTAAAGAGCAAGATGTC
1 TTTTTCTTTTTAAAGCCCACACGAGTTGGTGGCACCTTTTAGTCCTCAAAGAGCAGGATGCC
* * **
93597 TTTTCCTTTTTAAAGCCCACACGAGTTGGTGGCACCTTTTAGTCCTTAAAGAATAGGATGCC
1 TTTTTCTTTTTAAAGCCCACACGAGTTGGTGGCACCTTTTAGTCCTCAAAGAGCAGGATGCC
* * * ***
93659 -TTTTCCTTTTAAAGCCCACAC-AGGTTGGTGGCATCTTTTAGTCCTCAAAAAAG-AGGACATC
1 TTTTTCTTTTTAAAGCCCACACGA-GTTGGTGGCACCTTTTAGTCCTC-AAAGAGCAGGATGCC
* * *
93720 TTTTTCTTTTTAAAGCCCATACGAGTTGGTGGAACCTTTTAGTCTTCAAAGAGCAGGATG-C
1 TTTTTCTTTTTAAAGCCCACACGAGTTGGTGGCACCTTTTAGTCCTCAAAGAGCAGGATGCC
* * * *
93781 TTTTTTTCTTTTAAAGCCTACATGAGTTGGTGGCAACTTTTAGTCCTCAAAGAGCAGGATGCC
1 TTTTTCT-TTTTAAAGCCCACACGAGTTGGTGGCACCTTTTAGTCCTCAAAGAGCAGGATGCC
*
93844 TTTTTC-TTTTAAAGCCCACACGAGTTGGTGGCACCTTTTAGTCCTCAAAAAGCAGGATGCC
1 TTTTTCTTTTTAAAGCCCACACGAGTTGGTGGCACCTTTTAGTCCTCAAAGAGCAGGATGCC
* *
93905 TTTTTCTTTTTAAAGCCCACGCGAGTTGGTGGCACCATTTAGTCCTCAAAGAGCAGGATGCC
1 TTTTTCTTTTTAAAGCCCACACGAGTTGGTGGCACCTTTTAGTCCTCAAAGAGCAGGATGCC
* * *
93967 --TTT-TTTTTAAAGCTCACATGAGTTGGTGGCACCTTTTAGTCCTCAAAGAGCAGGACGCC
1 TTTTTCTTTTTAAAGCCCACACGAGTTGGTGGCACCTTTTAGTCCTCAAAGAGCAGGATGCC
* * *
94026 TTTTTCTTTTTAAAGCCCACACGAGTTGGTGGCACCTTTTGGTCCTCAACGAGTAGGATGCC
1 TTTTTCTTTTTAAAGCCCACACGAGTTGGTGGCACCTTTTAGTCCTCAAAGAGCAGGATGCC
* * **
94088 TTTTTCTTTTTAAAGTCCACACGAGTTGGTGGCACCTTTTAGTCCTTAAAGAGCAGGACACC
1 TTTTTCTTTTTAAAGCCCACACGAGTTGGTGGCACCTTTTAGTCCTCAAAGAGCAGGATGCC
* * * *
94150 TTTTTCTTTTAAAAGCCCACACAAGTTGGTGACACCTTTTAGTCCTCAAAGAGTAGGATGCC
1 TTTTTCTTTTTAAAGCCCACACGAGTTGGTGGCACCTTTTAGTCCTCAAAGAGCAGGATGCC
*
94212 TTTTTCTTTTAAAAGCCC
1 TTTTTCTTTTTAAAGCCC
94230 TTCTCAAAGA
Statistics
Matches: 758, Mismatches: 102, Indels: 39
0.84 0.11 0.04
Matches are distributed among these distances:
59 99 0.13
60 5 0.01
61 121 0.16
62 469 0.62
63 59 0.08
64 4 0.01
65 1 0.00
ACGTcount: A:0.25, C:0.22, G:0.19, T:0.34
Consensus pattern (62 bp):
TTTTTCTTTTTAAAGCCCACACGAGTTGGTGGCACCTTTTAGTCCTCAAAGAGCAGGATGCC
Found at i:93729 original size:123 final size:123
Alignment explanation
Indices: 93289--94229 Score: 1110
Period size: 123 Copynumber: 7.6 Consensus size: 123
93279 TCCTTTTTGT
* * * * * *
93289 TTTTCCTTTTTAAAGCCTACATGAGTTGATGGCACCTTTTAGTCCTCAAAAAGCAAGATGCCTTT
1 TTTTCC-TTTTAAAGCCCACACGAGTTGGTGGCACCTTTTAGTCCTCAAAGAGCAGGATGTCTTT
* * * * * *
93354 TCCTTTTTAAAGCCCATACAAG-T--TGGCACTTTTTAGTCCTCAAAGAGTAGGATGTC
65 TTCTTTTTAAAGCCCACACGAGTTGGTGGCACCTTTTAGTCCTCAAAGAGCAGGATGCC
* * * * * **
93410 TGTTCCTTTTTAAAGCCCACATGGGTTGGTGGCACCTTTTAGTCCTCAAAGAGTAGCACAT-TTT
1 TTTTCC-TTTTAAAGCCCACACGAGTTGGTGGCACCTTTTAGTCCTCAAAGAGCAGGATGTCTTT
* * * * *
93474 TTCCTTTTTAAAGCCTACACGAGTTGATAGCACCTTTTTAGTCCTCAAAAAGTAGGATGCC
65 TT-CTTTTTAAAGCCCACACGAGTTGGTGGCACC-TTTTAGTCCTCAAAGAGCAGGATGCC
* * *
93535 TTTTCCTTGTTAAAGCCTACACGAGTTGGTGGCACCTTTTAGTCCTTAAAGAGCAAGATGTCTTT
1 TTTTCCTT-TTAAAGCCCACACGAGTTGGTGGCACCTTTTAGTCCTCAAAGAGCAGGATGTCTTT
* * **
93600 TCCTTTTTAAAGCCCACACGAGTTGGTGGCACCTTTTAGTCCTTAAAGAATAGGATGCC
65 TTCTTTTTAAAGCCCACACGAGTTGGTGGCACCTTTTAGTCCTCAAAGAGCAGGATGCC
* * **
93659 TTTTCCTTTTAAAGCCCACAC-AGGTTGGTGGCATCTTTTAGTCCTCAAAAAAG-AGGACATCTT
1 TTTTCCTTTTAAAGCCCACACGA-GTTGGTGGCACCTTTTAGTCCTC-AAAGAGCAGGATGTCTT
* * * *
93722 TTTCTTTTTAAAGCCCATACGAGTTGGTGGAACCTTTTAGTCTTCAAAGAGCAGGATGCTT
64 TTTCTTTTTAAAGCCCACACGAGTTGGTGGCACCTTTTAGTCCTCAAAGAGCAGGATGC-C
* * * * *
93783 TTTTTCTTTTAAAGCCTACATGAGTTGGTGGCAACTTTTAGTCCTCAAAGAGCAGGATGCCTTTT
1 TTTTCCTTTTAAAGCCCACACGAGTTGGTGGCACCTTTTAGTCCTCAAAGAGCAGGATGTCTTTT
*
93848 TC-TTTTAAAGCCCACACGAGTTGGTGGCACCTTTTAGTCCTCAAAAAGCAGGATGCC
66 TCTTTTTAAAGCCCACACGAGTTGGTGGCACCTTTTAGTCCTCAAAGAGCAGGATGCC
* * * *
93905 TTTTTCTTTTTAAAGCCCACGCGAGTTGGTGGCACCATTTAGTCCTCAAAGAGCAGGATG-C-CT
1 -TTTTCCTTTTAAAGCCCACACGAGTTGGTGGCACCTTTTAGTCCTCAAAGAGCAGGATGTCTTT
* * *
93968 TT-TTTTTAAAGCTCACATGAGTTGGTGGCACCTTTTAGTCCTCAAAGAGCAGGACGCC
65 TTCTTTTTAAAGCCCACACGAGTTGGTGGCACCTTTTAGTCCTCAAAGAGCAGGATGCC
* * * * *
94026 TTTTTCTTTTTAAAGCCCACACGAGTTGGTGGCACCTTTTGGTCCTCAACGAGTAGGATGCCTTT
1 -TTTTCCTTTTAAAGCCCACACGAGTTGGTGGCACCTTTTAGTCCTCAAAGAGCAGGATGTCTTT
* * **
94091 TTCTTTTTAAAGTCCACACGAGTTGGTGGCACCTTTTAGTCCTTAAAGAGCAGGACACC
65 TTCTTTTTAAAGCCCACACGAGTTGGTGGCACCTTTTAGTCCTCAAAGAGCAGGATGCC
* * * * *
94150 TTTTTCTTTTAAAAGCCCACACAAGTTGGTGACACCTTTTAGTCCTCAAAGAGTAGGATGCCTTT
1 TTTTCCTTTT-AAAGCCCACACGAGTTGGTGGCACCTTTTAGTCCTCAAAGAGCAGGATGTCTTT
*
94215 TTCTTTTAAAAGCCC
65 TTCTTTTTAAAGCCC
94230 TTCTCAAAGA
Statistics
Matches: 707, Mismatches: 95, Indels: 33
0.85 0.11 0.04
Matches are distributed among these distances:
120 4 0.01
121 176 0.25
122 4 0.01
123 210 0.30
124 208 0.29
125 101 0.14
126 4 0.01
ACGTcount: A:0.25, C:0.22, G:0.19, T:0.34
Consensus pattern (123 bp):
TTTTCCTTTTAAAGCCCACACGAGTTGGTGGCACCTTTTAGTCCTCAAAGAGCAGGATGTCTTTT
TCTTTTTAAAGCCCACACGAGTTGGTGGCACCTTTTAGTCCTCAAAGAGCAGGATGCC
Found at i:93795 original size:185 final size:185
Alignment explanation
Indices: 93289--94229 Score: 1152
Period size: 185 Copynumber: 5.1 Consensus size: 185
93279 TCCTTTTTGT
* * * *
93289 TTTTCCTTTTTAAAGCCTACATGAGTTGATGGCACCTTTTAGTCCTCAAAAAGCAAGATGCCTTT
1 TTTTCC-TTTTAAAGCCCACACGAGTTGGTGGCACCTTTTAGTCCTCAAAAAGCAGGATGCCTTT
* * * * * * * *
93354 TCCTTTTTAAAGCCCATACAAG-T--TGGCACTTTTTAGTCCTCAAAGAGTAGGATG-TCTGTTC
65 TTCTTTTTAAAGCCCACACGAGTTGGTGGCACCTTTTAGTCTTCAAAGAGCAGGATGCTCTTTTT
* * ****
93415 CTTTTTAAAGCCCACATGGGTTGGTGGCACCTTTTAGTCCTCAAAGAGTAGCACATT
130 C-TTTTAAAGCCCACATGAGTTGGTGGCACCTTTTAGTCCTCAAAGAGTAGGATGCC
* * * *
93472 TTTTCCTTTTTAAAGCCTACACGAGTTGATAGCACCTTTTTAGTCCTCAAAAAGTAGGATGCCTT
1 TTTTCC-TTTTAAAGCCCACACGAGTTGGTGGCACC-TTTTAGTCCTCAAAAAGCAGGATGCCTT
* * * *
93537 TTCCTTGTTAAAGCCTACACGAGTTGGTGGCACCTTTTAGTCCTT-AAAGAGCAAGATG-TCTTT
64 TTTCTTTTTAAAGCCCACACGAGTTGGTGGCACCTTTTAGT-CTTCAAAGAGCAGGATGCTCTTT
* * * *
93600 TCCTTTTTAAAGCCCACACGAGTTGGTGGCACCTTTTAGTCCTTAAAGAATAGGATGCC
128 TTC-TTTTAAAGCCCACATGAGTTGGTGGCACCTTTTAGTCCTCAAAGAGTAGGATGCC
* ***
93659 TTTTCCTTTTAAAGCCCACAC-AGGTTGGTGGCATCTTTTAGTCCTCAAAAAAG-AGGACATCTT
1 TTTTCCTTTTAAAGCCCACACGA-GTTGGTGGCACCTTTTAGTCCTC-AAAAAGCAGGATGCCTT
* * *
93722 TTTCTTTTTAAAGCCCATACGAGTTGGTGGAACCTTTTAGTCTTCAAAGAGCAGGATGCTTTTTT
64 TTTCTTTTTAAAGCCCACACGAGTTGGTGGCACCTTTTAGTCTTCAAAGAGCAGGATGCTCTTTT
* * *
93787 TCTTTTAAAGCCTACATGAGTTGGTGGCAACTTTTAGTCCTCAAAGAGCAGGATGCC
129 TCTTTTAAAGCCCACATGAGTTGGTGGCACCTTTTAGTCCTCAAAGAGTAGGATGCC
*
93844 TTTTTCTTTTAAAGCCCACACGAGTTGGTGGCACCTTTTAGTCCTCAAAAAGCAGGATGCCTTTT
1 TTTTCCTTTTAAAGCCCACACGAGTTGGTGGCACCTTTTAGTCCTCAAAAAGCAGGATGCCTTTT
* * *
93909 TCTTTTTAAAGCCCACGCGAGTTGGTGGCACCATTTAGTCCTCAAAGAGCAGGATGC-C-TTTT-
66 TCTTTTTAAAGCCCACACGAGTTGGTGGCACCTTTTAGTCTTCAAAGAGCAGGATGCTCTTTTTC
* * *
93971 TTTTAAAGCTCACATGAGTTGGTGGCACCTTTTAGTCCTCAAAGAGCAGGACGCC
131 TTTTAAAGCCCACATGAGTTGGTGGCACCTTTTAGTCCTCAAAGAGTAGGATGCC
* * ** *
94026 TTTTTCTTTTTAAAGCCCACACGAGTTGGTGGCACCTTTTGGTCCTCAACGAGTAGGATGCCTTT
1 -TTTTCCTTTTAAAGCCCACACGAGTTGGTGGCACCTTTTAGTCCTCAAAAAGCAGGATGCCTTT
* **
94091 TTCTTTTTAAAGTCCACACGAGTTGGTGGCACCTTTTAGTCCTT-AAAGAGCAGGACAC-CTTTT
65 TTCTTTTTAAAGCCCACACGAGTTGGTGGCACCTTTTAGT-CTTCAAAGAGCAGGATGCTCTTTT
** *
94154 TCTTTTAAAAGCCCACACAAGTTGGTGACACCTTTTAGTCCTCAAAGAGTAGGATGCC
129 TCTTTT-AAAGCCCACATGAGTTGGTGGCACCTTTTAGTCCTCAAAGAGTAGGATGCC
*
94212 TTTTTCTTTTAAAAGCCC
1 TTTTCCTTTT-AAAGCCC
94230 TTCTCAAAGA
Statistics
Matches: 663, Mismatches: 78, Indels: 31
0.86 0.10 0.04
Matches are distributed among these distances:
182 51 0.08
183 146 0.22
184 60 0.09
185 232 0.35
186 88 0.13
187 84 0.13
188 2 0.00
ACGTcount: A:0.25, C:0.22, G:0.19, T:0.34
Consensus pattern (185 bp):
TTTTCCTTTTAAAGCCCACACGAGTTGGTGGCACCTTTTAGTCCTCAAAAAGCAGGATGCCTTTT
TCTTTTTAAAGCCCACACGAGTTGGTGGCACCTTTTAGTCTTCAAAGAGCAGGATGCTCTTTTTC
TTTTAAAGCCCACATGAGTTGGTGGCACCTTTTAGTCCTCAAAGAGTAGGATGCC
Found at i:94246 original size:38 final size:38
Alignment explanation
Indices: 94194--94267 Score: 130
Period size: 38 Copynumber: 1.9 Consensus size: 38
94184 CCTTTTAGTC
*
94194 CTCAAAGAGTAGGATGCCTTTTTCTTTTAAAAGCCCTT
1 CTCAAAGAGCAGGATGCCTTTTTCTTTTAAAAGCCCTT
*
94232 CTCAAAGAGCAGGATGCTTTTTTCTTTTAAAAGCCC
1 CTCAAAGAGCAGGATGCCTTTTTCTTTTAAAAGCCC
94268 ACATAAGTTG
Statistics
Matches: 34, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
38 34 1.00
ACGTcount: A:0.27, C:0.22, G:0.16, T:0.35
Consensus pattern (38 bp):
CTCAAAGAGCAGGATGCCTTTTTCTTTTAAAAGCCCTT
Found at i:96315 original size:13 final size:13
Alignment explanation
Indices: 96297--96321 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
96287 ATTACTCACA
96297 TGTATCGATACAT
1 TGTATCGATACAT
96310 TGTATCGATACA
1 TGTATCGATACA
96322 CTGATCTTTG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.36
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:96458 original size:52 final size:52
Alignment explanation
Indices: 96330--96449 Score: 213
Period size: 52 Copynumber: 2.3 Consensus size: 52
96320 CACTGATCTT
* *
96330 TGTATCGATACATGCAGGGAAATTTGCCCAGATGTATCGATACATTATAAAA
1 TGTATCGATACATGCAGGCAAATTTGCCCAGATGTATCGATACACTATAAAA
*
96382 TGTATCGATACATGCAGGCAAATTTGCCCAGATGTATCGATACACTATTAAA
1 TGTATCGATACATGCAGGCAAATTTGCCCAGATGTATCGATACACTATAAAA
96434 TGTATCGATACATGCA
1 TGTATCGATACATGCA
96450 AATAAATTTT
Statistics
Matches: 65, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
52 65 1.00
ACGTcount: A:0.35, C:0.17, G:0.18, T:0.29
Consensus pattern (52 bp):
TGTATCGATACATGCAGGCAAATTTGCCCAGATGTATCGATACACTATAAAA
Found at i:102832 original size:13 final size:13
Alignment explanation
Indices: 102814--102868 Score: 56
Period size: 13 Copynumber: 3.8 Consensus size: 13
102804 GGCAACTTTG
102814 TATCGATACATTA
1 TATCGATACATTA
102827 TATCGATACAGCACTTA
1 TATCGAT--A-CA-TTA
102844 TGTATCGATACATTA
1 --TATCGATACATTA
102859 TATCGATACA
1 TATCGATACA
102869 GCACTTATGT
Statistics
Matches: 36, Mismatches: 0, Indels: 12
0.75 0.00 0.25
Matches are distributed among these distances:
13 17 0.47
15 4 0.11
16 4 0.11
17 4 0.11
19 7 0.19
ACGTcount: A:0.36, C:0.18, G:0.11, T:0.35
Consensus pattern (13 bp):
TATCGATACATTA
Found at i:102851 original size:19 final size:19
Alignment explanation
Indices: 102827--102887 Score: 80
Period size: 19 Copynumber: 3.5 Consensus size: 19
102817 CGATACATTA
102827 TATCGATACAGCACTTATG
1 TATCGATACAGCACTTATG
102846 TATCGAT--A-CA-TTA--
1 TATCGATACAGCACTTATG
102859 TATCGATACAGCACTTATG
1 TATCGATACAGCACTTATG
102878 TATCGATACA
1 TATCGATACA
102888 TTTACTGTTT
Statistics
Matches: 36, Mismatches: 0, Indels: 12
0.75 0.00 0.25
Matches are distributed among these distances:
13 7 0.19
15 4 0.11
16 4 0.11
17 4 0.11
19 17 0.47
ACGTcount: A:0.34, C:0.20, G:0.13, T:0.33
Consensus pattern (19 bp):
TATCGATACAGCACTTATG
Found at i:102853 original size:32 final size:32
Alignment explanation
Indices: 102808--102889 Score: 157
Period size: 32 Copynumber: 2.6 Consensus size: 32
102798 ATGCAGGGCA
102808 ACTT-TGTATCGATACATTATATCGATACAGC
1 ACTTATGTATCGATACATTATATCGATACAGC
102839 ACTTATGTATCGATACATTATATCGATACAGC
1 ACTTATGTATCGATACATTATATCGATACAGC
102871 ACTTATGTATCGATACATT
1 ACTTATGTATCGATACATT
102890 TACTGTTTGT
Statistics
Matches: 50, Mismatches: 0, Indels: 1
0.98 0.00 0.02
Matches are distributed among these distances:
31 4 0.08
32 46 0.92
ACGTcount: A:0.33, C:0.18, G:0.12, T:0.37
Consensus pattern (32 bp):
ACTTATGTATCGATACATTATATCGATACAGC
Found at i:104776 original size:79 final size:78
Alignment explanation
Indices: 104663--105077 Score: 390
Period size: 79 Copynumber: 5.3 Consensus size: 78
104653 CACTTCTATG
* ** * *
104663 ATATCAAATTTTTCATC-TCAAGGATACTACAACCCCATTATTTCTAACGGGATACTCCAACCCC
1 ATATTAAATTTTTCATCTTGGA-GATACTCCAACCCCATTATTTCTGA-GGGATACTCCAACCCC
104727 ATTTTTATTTTTGAA
64 ATTTTTATTTTTGAA
** * ** *
104742 ATATTAAATTTTTTGTCTTGGATATACTTTAACCCCTTTATTTC-GAGGGGATACTCCAACCCCA
1 ATATTAAATTTTTCATCTTGGAGATACTCCAACCCCATTATTTCTGA-GGGATACTCCAACCCCA
*
104806 -TTTTATTTATGAA
65 TTTTTATTTTTGAA
* * * * * * *
104819 ATGTTAAAATTTTCAT-TTCGAGGATACTCCAATCTCATTATTT-TCGAGGGGATATTCTAACCC
1 ATATTAAATTTTTCATCTTGGA-GATACTCCAACCCCATTATTTCT-GA-GGGATACTCCAACCC
** * *
104882 TGTTTTTGTTTTCGAA
63 CATTTTTATTTTTGAA
* * * * * *
104898 ATACTAAATTTTTCATCTTGGGGATACTCCAACCCTATTATTTTTGAGGGTATACTCCAACCTCG
1 ATATTAAATTTTTCATCTTGGAGATACTCCAACCCCATTATTTCTGAGGG-ATACTCCAACCCCA
104963 TTTTTATTTTTGAA
65 TTTTTATTTTTGAA
* * * **
104977 ATATTAAAATTTTCATTTTGGGGATACTCCAACCCTGTTATTTCTGAAGGGATACTCCAACCCCA
1 ATATTAAATTTTTCATCTTGGAGATACTCCAACCCCATTATTTCTG-AGGGATACTCCAACCCCA
* *
105042 TTTTTATTTCTAAA
65 TTTTTATTTTTGAA
105056 ATATTAAATTTTTCATCATTGG
1 ATATTAAATTTTTCATC-TTGG
105078 GGGTACTCTA
Statistics
Matches: 271, Mismatches: 55, Indels: 19
0.79 0.16 0.06
Matches are distributed among these distances:
76 4 0.01
77 39 0.14
78 37 0.14
79 177 0.65
80 14 0.05
ACGTcount: A:0.28, C:0.19, G:0.12, T:0.41
Consensus pattern (78 bp):
ATATTAAATTTTTCATCTTGGAGATACTCCAACCCCATTATTTCTGAGGGATACTCCAACCCCAT
TTTTATTTTTGAA
Found at i:105029 original size:158 final size:155
Alignment explanation
Indices: 104663--105085 Score: 440
Period size: 156 Copynumber: 2.7 Consensus size: 155
104653 CACTTCTATG
* * * * * *
104663 ATATCAAATTTTTCATCTCAAGGATACTACAACCCCATTATTTCT-AACGGGATACTCCAACCCC
1 ATATTAAAATTTTCATTTCGAGGATACTCCAACCCTATTATTTCTGAA-GGGATACTCCAACCCC
* ** ** **
104727 ATTTTTATTTTTGAAATATTAAATTTTTTGTCTTGGATATACTTTAACCCCTTTATTTCGAGGGG
65 ATTTTT-TTTTCGAAATATTAAATTTTTCATCTTGGGGATACTCCAACCCCTTTATTTCGAGGGG
104792 ATACTCCAACCCCATTTTATTTATGAA
129 ATACTCCAACCCCATTTTATTTATGAA
* * * * *
104819 ATGTTAAAATTTTCATTTCGAGGATACTCCAA-TCTCATTATTT-TCGAGGGGATATTCTAACCC
1 ATATTAAAATTTTCATTTCGAGGATACTCCAACCCT-ATTATTTCT-GAAGGGATACTCCAACCC
** * *
104882 TGTTTTTGTTTTCGAAATACTAAATTTTTCATCTTGGGGATACTCCAA-CCCTATTATTTTTGAG
64 CATTTTT-TTTTCGAAATATTAAATTTTTCATCTTGGGGATACTCCAACCCCT-TTA-TTTCGAG
* ** *
104946 GGTATACTCCAACCTCGTTTTTATTTTTGAA
126 GGGATACTCCAACC-CCATTTTATTTATGAA
* * *
104977 ATATTAAAATTTTCATTTTGGGGATACTCCAACCCTGTTATTTCTGAAGGGATACTCCAACCCCA
1 ATATTAAAATTTTCATTTCGAGGATACTCCAACCCTATTATTTCTGAAGGGATACTCCAACCCCA
* * *
105042 TTTTTATTTCTAAAATATTAAATTTTTCATCATTGGGGGTACTC
66 TTTTTTTTTC-GAAATATTAAATTTTTCATC-TTGGGGATACTC
105086 TATCCCCACA
Statistics
Matches: 216, Mismatches: 41, Indels: 17
0.79 0.15 0.06
Matches are distributed among these distances:
155 6 0.03
156 86 0.40
157 24 0.11
158 86 0.40
159 14 0.06
ACGTcount: A:0.28, C:0.19, G:0.12, T:0.41
Consensus pattern (155 bp):
ATATTAAAATTTTCATTTCGAGGATACTCCAACCCTATTATTTCTGAAGGGATACTCCAACCCCA
TTTTTTTTTCGAAATATTAAATTTTTCATCTTGGGGATACTCCAACCCCTTTATTTCGAGGGGAT
ACTCCAACCCCATTTTATTTATGAA
Found at i:108108 original size:164 final size:164
Alignment explanation
Indices: 107649--108146 Score: 639
Period size: 165 Copynumber: 3.0 Consensus size: 164
107639 TTTTCATGGG
* * *
107649 TTTAAATT-TTCAAATATTATTATTTATTTCATATTAAATTATTATTCAAAAATTCTTTCATTTT
1 TTTAAATTCATCAAATATTATTATTTATTTCACATTAAATTATTTTTCAAAAATTCTTTCATTTT
* * * * * *
107713 CAATAGTTTTTGAATTTTTCTTGAAATTCTCATATTTTCGAAATACGAAGTTTTCCACTTCATAA
66 CATTAGTTTTTGATTTTTTCTTGAAATTCTCTTATTTTCTAAATACGAAGTTTTCTACTCCATAA
* * * *
107778 ATTTTTTTGAGAGAATTTTTCTTGGTTTTTATTT
131 ATTTTTTCGAGAGGATTTTTCTTGCTTTTAATTT
* * * *
107812 TTTAAAATTCATAAAATATTATTATTTCTTTTACATTAAATTAGTTTTCAAAAATTCTTTCATTT
1 TTT-AAATTCATCAAATATTATTATTTATTTCACATTAAATTATTTTTCAAAAATTCTTTCATTT
* *
107877 TCATTACTTTTTGAATTTTTTCCTTGAAATTCTCTTATTTT-TGAAATACGAAGTTTTCTATTCC
65 TCATTAGTTTTTG-ATTTTTT-CTTGAAATTCTCTTATTTTCT-AAATACGAAGTTTTCTACTCC
107941 ATAAATTTTTTC-AGAAGGATTTTTCTTGACTTTTAATTT
127 ATAAATTTTTTCGAG-AGGATTTTTCTTG-CTTTTAATTT
* * *
107980 TTTAAATTCATCAATTATTATT-TTTATTTCACATTAAA-TATTTTTTAAAAATTCCTTCATTTT
1 TTTAAATTCATCAAATATTATTATTTATTTCACATTAAATTATTTTTCAAAAATTCTTTCATTTT
* * *
108043 CATTAGTTTTTTATTTTTTTGCTTGAAATT-TCTTATTTTCTAAATGCGGAGTTTTCTACTCCAT
66 CATTAGTTTTTGA-TTTTTT-CTTGAAATTCTCTTATTTTCTAAATACGAAGTTTTCTACTCCAT
* *
108107 AAATTTTTTCGAGAGGATTTTTTTTGTTTTTAATTT
129 AAATTTTTTCGAGAGGATTTTTCTTGCTTTTAATTT
108143 TTTA
1 TTTA
108147 TTGTCACAAC
Statistics
Matches: 291, Mismatches: 34, Indels: 20
0.84 0.10 0.06
Matches are distributed among these distances:
163 16 0.05
164 57 0.20
165 109 0.37
166 22 0.08
167 76 0.26
168 11 0.04
ACGTcount: A:0.29, C:0.10, G:0.07, T:0.54
Consensus pattern (164 bp):
TTTAAATTCATCAAATATTATTATTTATTTCACATTAAATTATTTTTCAAAAATTCTTTCATTTT
CATTAGTTTTTGATTTTTTCTTGAAATTCTCTTATTTTCTAAATACGAAGTTTTCTACTCCATAA
ATTTTTTCGAGAGGATTTTTCTTGCTTTTAATTT
Found at i:111403 original size:20 final size:20
Alignment explanation
Indices: 111378--111434 Score: 78
Period size: 20 Copynumber: 2.9 Consensus size: 20
111368 GTAAAAAGAC
111378 AGAATGTATCGATACATTGA
1 AGAATGTATCGATACATTGA
**
111398 AGAATGTATCGATACATTTT
1 AGAATGTATCGATACATTGA
**
111418 TCAATGTATCGATACAT
1 AGAATGTATCGATACAT
111435 CTGGGTACTT
Statistics
Matches: 33, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 33 1.00
ACGTcount: A:0.37, C:0.12, G:0.16, T:0.35
Consensus pattern (20 bp):
AGAATGTATCGATACATTGA
Found at i:112421 original size:28 final size:28
Alignment explanation
Indices: 112287--113066 Score: 824
Period size: 28 Copynumber: 27.1 Consensus size: 28
112277 TTCTAAAAAA
* *
112287 GAAAAGGTGCCACTAACTTGTGTGGGCTTT
1 GAAAGGGTGCCACTGAC-T-TGTGGGCTTT
* *
112317 GAAAAGAGTTGCCACCGACTCTTGTGGGCTTT
1 G-AAAG-GGTGCCACTGA--CTTGTGGGCTTT
* *
112349 GAAAAGAGTTACCACT-ATCTTGTGGGCTTT
1 G-AAAG-GGTGCCACTGA-CTTGTGGGCTTT
* *
112379 GAAAAGAGTGCCATTGACTTGTGGGCTTT
1 G-AAAGGGTGCCACTGACTTGTGGGCTTT
*
112408 GAAAGGGTGCCATTGACTTGTGGGCTTT
1 GAAAGGGTGCCACTGACTTGTGGGCTTT
* *
112436 GAAAGGATGCCACTAACTTGTGGGCTTT
1 GAAAGGGTGCCACTGACTTGTGGGCTTT
* * *
112464 GAAAAGAGTACCACTAACTTGTGGGCTTT
1 G-AAAGGGTGCCACTGACTTGTGGGCTTT
* * *
112493 GAAAGAGTGTCACTGACTTGTAGGCTTT
1 GAAAGGGTGCCACTGACTTGTGGGCTTT
* * * *
112521 GAAAGGTTTCCACTGACTTATAGGCTTT
1 GAAAGGGTGCCACTGACTTGTGGGCTTT
*
112549 GAAAAGGTGCCACTGACTTGTGGGCTTT
1 GAAAGGGTGCCACTGACTTGTGGGCTTT
* *
112577 GAAAGGATGCCACTAACTTGTGGGCTTT
1 GAAAGGGTGCCACTGACTTGTGGGCTTT
*
112605 GGAAAAGAGTGCCACTGACTTGTGGGCTTT
1 -G-AAAGGGTGCCACTGACTTGTGGGCTTT
* *
112635 AAAAGGGTGCCACTGACTTGTGAGCTTT
1 GAAAGGGTGCCACTGACTTGTGGGCTTT
*
112663 GAAAGAGTGCCACTGACTTGTGGGCTTT
1 GAAAGGGTGCCACTGACTTGTGGGCTTT
* *
112691 GAAAAGGTGCCACTGACTTGCGAGGGCTTT
1 GAAAGGGTGCCACTGACTT--GTGGGCTTT
*
112721 GAAAGAGTGCCACTGACTTGTGGGCTTT
1 GAAAGGGTGCCACTGACTTGTGGGCTTT
*
112749 GAAAGGGTGCCACTGACTTGCGAGGGCTTT
1 GAAAGGGTGCCACTGACTT--GTGGGCTTT
* *
112779 GAAAGAGTGCCACTGACTTTTGGGCTTT
1 GAAAGGGTGCCACTGACTTGTGGGCTTT
* *
112807 GAAAGGGTGCCATTGACTCGTGGGCTTT
1 GAAAGGGTGCCACTGACTTGTGGGCTTT
* * * *
112835 GAAAAGAGTGCCACTAACTTGCGTGAGCATT
1 G-AAAGGGTGCCACTGACTT--GTGGGCTTT
*
112866 AAAAGGGTGCCACTGACTTGTGGGCTTT
1 GAAAGGGTGCCACTGACTTGTGGGCTTT
* * *
112894 AAAAGGATGGCACTGACTTGTGGGCTTT
1 GAAAGGGTGCCACTGACTTGTGGGCTTT
* * *
112922 AAAAGGGTGCCACTAACTTGTAGGCTTT
1 GAAAGGGTGCCACTGACTTGTGGGCTTT
* *
112950 GAAAAGAGTGCCATTGACTTGTGGGCTTT
1 G-AAAGGGTGCCACTGACTTGTGGGCTTT
* *
112979 GAAAAGGTGCTACTGACTTGTGGGCTTT
1 GAAAGGGTGCCACTGACTTGTGGGCTTT
** * * *
113007 GAAAATAGTGTCACTGATTTGTAGGCTTT
1 G-AAAGGGTGCCACTGACTTGTGGGCTTT
* * *
113036 AAAAGGGTGCCACTAACTTGGGGGCTTT
1 GAAAGGGTGCCACTGACTTGTGGGCTTT
113064 GAA
1 GAA
113067 GAGATGAACG
Statistics
Matches: 634, Mismatches: 99, Indels: 36
0.82 0.13 0.05
Matches are distributed among these distances:
28 374 0.59
29 103 0.16
30 112 0.18
31 11 0.02
32 32 0.05
33 1 0.00
34 1 0.00
ACGTcount: A:0.24, C:0.17, G:0.30, T:0.29
Consensus pattern (28 bp):
GAAAGGGTGCCACTGACTTGTGGGCTTT
Found at i:112648 original size:114 final size:113
Alignment explanation
Indices: 112288--113066 Score: 917
Period size: 114 Copynumber: 6.8 Consensus size: 113
112278 TCTAAAAAAG
* *
112288 AAAA-GGTGCCACTAACTTGTGTGGGCTTTGAAAAGAGTTGCCACCGACTCTTGTGGGCTTTGAA
1 AAAAGGGTGCCACTGAC-T-TGTGGGCTTTGAAAAG-G-TGCCACTGA--CTTGTGGGCTTTG-A
* * * *
112352 AAGAGTTACCACTATCTTGTGGGCTTTGAAAAGAGTGCCATTGACTTGTGGGCTTT
59 AAG-GGTGCCACTAACTTGTGGGCTTTGAAAAGAGTGCCACTGACTTGTGGGCTTT
* * * *
112408 GAAAGGGTGCCATTGACTTGTGGGCTTTG-AAAGGATGCCACTAACTTGTGGGCTTTGAAAAGAG
1 AAAAGGGTGCCACTGACTTGTGGGCTTTGAAAAGG-TGCCACTGACTTGTGGGCTTTG-AAAGGG
* * *
112472 TACCACTAACTTGTGGGCTTTG-AAAGAGTGTCACTGACTTGTAGGCTTT
64 TGCCACTAACTTGTGGGCTTTGAAAAGAGTGCCACTGACTTGTGGGCTTT
* * * * * *
112521 GAAAGGTTTCCACTGACTTATAGGCTTTGAAAAGGTGCCACTGACTTGTGGGCTTTGAAAGGATG
1 AAAAGGGTGCCACTGACTTGTGGGCTTTGAAAAGGTGCCACTGACTTGTGGGCTTTGAAAGGGTG
112586 CCACTAACTTGTGGGCTTTGGAAAAGAGTGCCACTGACTTGTGGGCTTT
66 CCACTAACTTGTGGGCTTT-GAAAAGAGTGCCACTGACTTGTGGGCTTT
* *
112635 AAAAGGGTGCCACTGACTTGTGAGCTTTG-AAAGAGTGCCACTGACTTGTGGGCTTTGAAAAGGT
1 AAAAGGGTGCCACTGACTTGTGGGCTTTGAAAAG-GTGCCACTGACTTGTGGGCTTTGAAAGGGT
* *
112699 GCCACTGACTTGCGAGGGCTTTG-AAAGAGTGCCACTGACTTGTGGGCTTT
65 GCCACTAACTT--GTGGGCTTTGAAAAGAGTGCCACTGACTTGTGGGCTTT
* * *
112749 GAAAGGGTGCCACTGACTTGCGAGGGCTTTG-AAAGAGTGCCACTGACTTTTGGGCTTTGAAAGG
1 AAAAGGGTGCCACTGACTT--GTGGGCTTTGAAAAG-GTGCCACTGACTTGTGGGCTTTGAAAGG
* * * * * *
112813 GTGCCATTGACTCGTGGGCTTTGAAAAGAGTGCCACTAACTTGCGTGAGCATT
63 GTGCCACTAACTTGTGGGCTTTGAAAAGAGTGCCACTGACTT--GTGGGCTTT
* *
112866 AAAAGGGTGCCACTGACTTGTGGGCTTT-AAAAGGATGGCACTGACTTGTGGGCTTTAAAAGGGT
1 AAAAGGGTGCCACTGACTTGTGGGCTTTGAAAAGG-TGCCACTGACTTGTGGGCTTTGAAAGGGT
* *
112930 GCCACTAACTTGTAGGCTTTGAAAAGAGTGCCATTGACTTGTGGGCTTT
65 GCCACTAACTTGTGGGCTTTGAAAAGAGTGCCACTGACTTGTGGGCTTT
* * * * * *
112979 GAAAA-GGTGCTACTGACTTGTGGGCTTTGAAAATAGTGTCACTGATTTGTAGGCTTTAAAAGGG
1 -AAAAGGGTGCCACTGACTTGTGGGCTTTGAAAA-GGTGCCACTGACTTGTGGGCTTTGAAAGGG
*
113043 TGCCACTAACTTGGGGGCTTTGAA
64 TGCCACTAACTTGTGGGCTTTGAA
113067 GAGATGAACG
Statistics
Matches: 578, Mismatches: 64, Indels: 40
0.85 0.09 0.06
Matches are distributed among these distances:
112 24 0.04
113 103 0.18
114 222 0.38
115 109 0.19
116 58 0.10
117 33 0.06
118 4 0.01
119 11 0.02
120 4 0.01
121 10 0.02
ACGTcount: A:0.24, C:0.17, G:0.30, T:0.29
Consensus pattern (113 bp):
AAAAGGGTGCCACTGACTTGTGGGCTTTGAAAAGGTGCCACTGACTTGTGGGCTTTGAAAGGGTG
CCACTAACTTGTGGGCTTTGAAAAGAGTGCCACTGACTTGTGGGCTTT
Found at i:112654 original size:86 final size:86
Alignment explanation
Indices: 112287--113066 Score: 829
Period size: 86 Copynumber: 9.0 Consensus size: 86
112277 TTCTAAAAAA
* * *
112287 GAAAA-GGTGCCACTAACTTGTGTGGGCTTTGAAAAGAGTTGCCACCGACTCTTGTGGGCTTTGA
1 GAAAAGGGTGCCACTGAC-T-TGTGGGCTTTG-AAAG-GATGCCACTGA--CTTGTGGGCTTTGA
*
112351 AAAGAGTTACCACT-ATCTTGTGGGCTTT
60 AAAGAG-TGCCACTGA-CTTGTGGGCTTT
* * * * *
112379 GAAAAGAGTGCCATTGACTTGTGGGCTTTGAAAGGGTGCCATTGACTTGTGGGCTTTGAAAGGA-
1 GAAAAGGGTGCCACTGACTTGTGGGCTTTGAAAGGATGCCACTGACTTGTGGGCTTTGAAAAGAG
*
112443 TGCCACTAACTTGTGGGCTTT
66 TGCCACTGACTTGTGGGCTTT
* * * * *
112464 GAAAAGAGTACCACTAACTTGTGGGCTTTGAAA-GAGTGTCACTGACTTGTAGGCTTTG-AAAG-
1 GAAAAGGGTGCCACTGACTTGTGGGCTTTGAAAGGA-TGCCACTGACTTGTGGGCTTTGAAAAGA
* * *
112526 GTTTCCACTGACTTATAGGCTTT
65 G-TGCCACTGACTTGTGGGCTTT
*
112549 GAAAA-GGTGCCACTGACTTGTGGGCTTTGAAAGGATGCCACTAACTTGTGGGCTTTGGAAAAGA
1 GAAAAGGGTGCCACTGACTTGTGGGCTTTGAAAGGATGCCACTGACTTGTGGGCTTT-GAAAAGA
112613 GTGCCACTGACTTGTGGGCTTT
65 GTGCCACTGACTTGTGGGCTTT
*
112635 -AAAAGGGTGCCACTGACTTGTGAGCTTTGAAA-GAGTGCCACTGACTTGTGGGCTTTGAAAAG-
1 GAAAAGGGTGCCACTGACTTGTGGGCTTTGAAAGGA-TGCCACTGACTTGTGGGCTTTGAAAAGA
*
112697 GTGCCACTGACTTGCGAGGGCTTT
65 GTGCCACTGACTT--GTGGGCTTT
* * *
112721 G-AAAGAGTGCCACTGACTTGTGGGCTTTGAAAGGGTGCCACTGACTTGCGAGGGCTTTG-AAAG
1 GAAAAGGGTGCCACTGACTTGTGGGCTTTGAAAGGATGCCACTGACTT--GTGGGCTTTGAAAAG
*
112784 AGTGCCACTGACTTTTGGGCTTT
64 AGTGCCACTGACTTGTGGGCTTT
* * * * * *
112807 G-AAAGGGTGCCATTGACTCGTGGGCTTTGAAAAGAGTGCCACTAACTTGCGTGAGCATT-AAAA
1 GAAAAGGGTGCCACTGACTTGTGGGCTTTGAAAGGA-TGCCACTGACTT--GTGGGCTTTGAAAA
*
112870 GGGTGCCACTGACTTGTGGGCTTT
63 GAGTGCCACTGACTTGTGGGCTTT
* * * * * *
112894 -AAAAGGATGGCACTGACTTGTGGGCTTTAAAAGGGTGCCACTAACTTGTAGGCTTTGAAAAGAG
1 GAAAAGGGTGCCACTGACTTGTGGGCTTTGAAAGGATGCCACTGACTTGTGGGCTTTGAAAAGAG
*
112958 TGCCATTGACTTGTGGGCTTT
66 TGCCACTGACTTGTGGGCTTT
* ** * * * *
112979 GAAAA-GGTGCTACTGACTTGTGGGCTTTGAAAATAGTGTCACTGATTTGTAGGCTTT-AAAAGG
1 GAAAAGGGTGCCACTGACTTGTGGGCTTTGAAAGGA-TGCCACTGACTTGTGGGCTTTGAAAAGA
* *
113042 GTGCCACTAACTTGGGGGCTTT
65 GTGCCACTGACTTGTGGGCTTT
113064 GAA
1 GAA
113067 GAGATGAACG
Statistics
Matches: 589, Mismatches: 75, Indels: 55
0.82 0.10 0.08
Matches are distributed among these distances:
84 65 0.11
85 180 0.31
86 189 0.32
87 95 0.16
88 22 0.04
89 8 0.01
90 4 0.01
91 11 0.02
92 6 0.01
93 9 0.02
ACGTcount: A:0.24, C:0.17, G:0.30, T:0.29
Consensus pattern (86 bp):
GAAAAGGGTGCCACTGACTTGTGGGCTTTGAAAGGATGCCACTGACTTGTGGGCTTTGAAAAGAG
TGCCACTGACTTGTGGGCTTT
Found at i:114308 original size:15 final size:14
Alignment explanation
Indices: 114270--114341 Score: 58
Period size: 15 Copynumber: 4.9 Consensus size: 14
114260 CTTTCTGTTT
*
114270 TTTGTTATTTTTTTC
1 TTTGTT-TTTTTTTA
*
114285 TTGGTTTTTTATTTA
1 TTTGTTTTTT-TTTA
*
114300 TTTGTTTTTTTTTG
1 TTTGTTTTTTTTTA
114314 TTT-TTTTAGTTTTT-
1 TTTGTTTT--TTTTTA
114328 TTTAGTTTTTTTTT
1 TTT-GTTTTTTTTT
114342 GGGTATGAAG
Statistics
Matches: 48, Mismatches: 4, Indels: 11
0.76 0.06 0.17
Matches are distributed among these distances:
13 4 0.08
14 18 0.38
15 22 0.46
16 4 0.08
ACGTcount: A:0.07, C:0.01, G:0.10, T:0.82
Consensus pattern (14 bp):
TTTGTTTTTTTTTA
Found at i:114315 original size:10 final size:10
Alignment explanation
Indices: 114267--114342 Score: 66
Period size: 10 Copynumber: 7.7 Consensus size: 10
114257 CCCCTTTCTG
114267 TTTTTTGTTAT
1 TTTTTTGTT-T
* *
114278 TTTTTTCTTG
1 TTTTTTGTTT
* *
114288 GTTTTT-TAT
1 TTTTTTGTTT
*
114297 TTATTTGTTT
1 TTTTTTGTTT
114307 TTTTTTG-TT
1 TTTTTTGTTT
*
114316 TTTTTAGTTT
1 TTTTTTGTTT
*
114326 TTTTTAGTTT
1 TTTTTTGTTT
114336 TTTTTTG
1 TTTTTTG
114343 GGTATGAAGG
Statistics
Matches: 52, Mismatches: 11, Indels: 5
0.76 0.16 0.07
Matches are distributed among these distances:
9 13 0.25
10 31 0.60
11 8 0.15
ACGTcount: A:0.07, C:0.01, G:0.11, T:0.82
Consensus pattern (10 bp):
TTTTTTGTTT
Found at i:114319 original size:9 final size:9
Alignment explanation
Indices: 114300--114340 Score: 55
Period size: 9 Copynumber: 4.3 Consensus size: 9
114290 TTTTTATTTA
114300 TTTGTTTTTT
1 TTTG-TTTTT
114310 TTTGTTTTT
1 TTTGTTTTT
*
114319 TTAGTTTTT
1 TTTGTTTTT
114328 TTTAGTTTTT
1 TTT-GTTTTT
114338 TTT
1 TTT
114341 TGGGTATGAA
Statistics
Matches: 28, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
9 15 0.54
10 13 0.46
ACGTcount: A:0.05, C:0.00, G:0.10, T:0.85
Consensus pattern (9 bp):
TTTGTTTTT
Found at i:114325 original size:19 final size:18
Alignment explanation
Indices: 114265--114339 Score: 69
Period size: 19 Copynumber: 4.1 Consensus size: 18
114255 GACCCCTTTC
* *
114265 TGTTTTTTGTTATTTTTT
1 TGTTTTTTTTTGTTTTTT
* * * *
114283 TCTTGGTTTTTTATTTATT
1 TGTT-TTTTTTTGTTTTTT
114302 TGTTTTTTTTTGTTTTTT
1 TGTTTTTTTTTGTTTTTT
*
114320 TAGTTTTTTTTAGTTTTTT
1 T-GTTTTTTTTTGTTTTTT
114339 T
1 T
114340 TTGGGTATGA
Statistics
Matches: 46, Mismatches: 9, Indels: 3
0.79 0.16 0.05
Matches are distributed among these distances:
18 15 0.33
19 31 0.67
ACGTcount: A:0.07, C:0.01, G:0.11, T:0.81
Consensus pattern (18 bp):
TGTTTTTTTTTGTTTTTT
Found at i:121799 original size:23 final size:23
Alignment explanation
Indices: 121773--121827 Score: 110
Period size: 23 Copynumber: 2.4 Consensus size: 23
121763 ATTGTTAGCA
121773 TGAATGCATATGACAAAAAGATG
1 TGAATGCATATGACAAAAAGATG
121796 TGAATGCATATGACAAAAAGATG
1 TGAATGCATATGACAAAAAGATG
121819 TGAATGCAT
1 TGAATGCAT
121828 TTGGGACAAT
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 32 1.00
ACGTcount: A:0.45, C:0.09, G:0.22, T:0.24
Consensus pattern (23 bp):
TGAATGCATATGACAAAAAGATG
Done.