genome.fa.s1005.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold1005
Parameters: 2 7 7 80 10 50 1000
Length:  71697

Tables:   1   

This is table  1  of  1  ( 72 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1719--1780	31	2.0	30	81	12	72	54	0	1	43	1.09
3353--3414	27	2.4	27	86	13	78	48	17	1	32	1.57
3361--3414	27	2.1	26	93	6	92	48	20	0	31	1.50
8026--8052	2	13.5	2	100	0	54	48	0	0	51	1.00
9151--9184	18	1.9	17	88	5	50	50	5	0	44	1.26
9504--9538	2	18.0	2	94	5	63	48	0	0	51	1.00
9850--9905	30	1.9	28	85	7	76	51	0	1	46	1.11
10405--10463	19	3.2	18	81	13	66	38	0	0	61	0.96
10397--10467	16	4.5	16	76	13	67	40	0	0	59	0.98
13761--13798	16	2.3	17	86	4	51	57	0	0	42	0.98
15877--15919	21	2.0	22	86	13	63	44	0	2	53	1.13
15996--16026	16	1.9	16	93	0	53	48	6	3	41	1.45
16736--16778	21	2.0	21	82	8	52	44	0	0	55	0.99
15759--17027	429	3.0	427	85	4	1640	44	10	9	36	1.71
24907--25158	34	7.5	34	87	4	332	40	26	7	25	1.83
24907--25158	68	3.7	68	89	1	373	40	26	7	25	1.83
29569--29818	34	7.4	34	87	4	328	40	26	8	25	1.83
29569--29818	68	3.7	68	89	1	369	40	26	8	25	1.83
30396--30472	13	5.9	14	72	15	58	64	0	0	35	0.93
31357--31394	17	2.2	17	90	0	58	36	7	21	34	1.82
31551--31593	18	2.3	18	84	11	52	27	2	0	69	1.00
31595--31638	22	1.9	24	82	17	58	45	0	2	52	1.13
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32772--32803	7	4.6	7	96	0	55	34	0	9	56	1.32
35909--35980	17	4.5	17	73	24	59	47	0	0	52	1.00
35909--35980	32	2.2	33	83	9	87	47	0	0	52	1.00
35907--35973	24	2.7	24	80	13	73	49	0	0	50	1.00
39551--39594	23	1.9	23	81	9	54	47	0	0	52	1.00
39570--39629	32	2.0	29	87	9	84	55	0	0	45	0.99
39570--39618	16	3.0	17	75	19	59	57	0	0	42	0.99
39827--39894	31	2.2	31	82	10	77	54	0	1	44	1.09
40686--40724	17	2.4	17	87	12	55	43	2	0	53	1.14
45526--45564	14	2.8	14	81	11	53	64	0	2	33	1.08
45912--45986	23	3.2	23	78	10	71	45	0	0	54	0.99
46011--46072	16	3.9	16	75	12	56	53	0	3	43	1.17
55431--55465	17	2.1	17	94	0	61	48	0	0	51	1.00
56670--56701	16	2.0	16	93	0	55	46	0	0	53	1.00
57459--57553	8	11.9	8	70	18	56	54	0	0	45	0.99
57463--57559	36	2.8	34	79	10	108	55	0	0	44	0.99
57452--57533	43	1.9	43	82	5	103	53	1	0	45	1.08
57463--57525	32	1.9	32	87	6	90	53	0	0	46	1.00
57823--57901	27	3.0	26	77	14	72	44	1	0	54	1.08
57846--57900	26	2.0	28	86	6	78	47	0	0	52	1.00
57923--57986	26	2.6	24	77	15	69	37	0	0	62	0.95
57927--57991	25	2.5	26	77	22	75	36	0	0	63	0.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
58463--58539	36	2.2	35	84	11	95	42	1	1	54	1.16
58566--58648	30	2.7	30	81	12	89	61	1	1	36	1.12
59296--59342	12	3.9	12	79	17	53	72	0	2	25	0.96
59297--59342	24	2.0	24	83	12	60	73	0	2	23	0.94
59253--59458	93	2.1	95	79	11	220	52	0	2	43	1.20
59520--59567	21	2.4	21	86	6	64	60	0	0	39	0.97
59527--59567	12	3.3	12	90	10	57	58	0	0	41	0.98
59731--59788	24	2.5	24	88	2	82	51	3	1	43	1.28
59870--59907	14	2.6	15	83	8	51	73	0	0	26	0.83
61464--61524	2	31.0	2	96	3	115	50	0	0	49	1.00
62175--62208	6	5.8	6	89	3	52	52	2	0	44	1.16
62175--62208	18	1.9	17	94	5	59	52	2	0	44	1.16
62451--62486	18	1.9	19	88	5	56	36	2	8	52	1.46
63047--63090	14	3.1	14	81	12	54	40	0	2	56	1.11
63089--63152	17	4.0	17	73	22	50	56	0	0	43	0.99
63085--63130	24	1.9	24	100	0	92	54	0	0	45	0.99
63078--63152	24	2.7	27	78	21	84	56	0	0	44	0.99
63323--63348	2	13.0	2	100	0	52	50	0	0	50	1.00
66697--66822	64	2.0	63	93	1	216	42	15	22	20	1.89
68589--68637	5	10.2	5	82	12	59	59	0	2	38	1.09
68574--68680	27	4.0	27	71	11	69	52	0	0	45	1.13
68636--68676	6	6.8	6	79	20	50	36	0	0	63	0.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
68772--68810	19	2.0	20	85	9	55	66	5	0	28	1.12
70427--70551	65	1.9	65	90	0	196	41	10	15	32	1.81
71196--71333	7	19.1	7	65	21	63	40	2	1	55	1.21
71194--71346	20	7.8	20	70	18	83	39	1	1	56	1.19
71272--71333	23	2.6	23	82	10	72	38	4	0	56	1.21
71296--71334	15	2.6	15	80	15	53	38	0	0	61	0.96

Tables:   1

The End!