Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold1008
Parameters: 2 7 7 80 10 50 1000
Length:  28019

Tables:   1   

This is table  1  of  1  ( 28 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
6344--6394
20
2.5
20
87
9
68
37
3
21
37
1.72
6433--6600
51
3.3
51
88
1
221
29
14
11
44
1.81
8888--9146
97
2.7
95
77
7
234
25
20
15
38
1.91
14323--14373
20
2.5
20
87
6
68
35
13
15
35
1.87
17784--17833
13
3.5
13
78
19
55
36
14
18
32
1.90
17765--17829
17
4.0
16
79
20
73
35
12
16
35
1.87
17763--17833
30
2.3
31
92
4
117
36
12
16
33
1.87
17850--17890
21
2.0
21
95
0
73
43
7
19
29
1.78
20238--20337
51
1.9
52
89
2
157
33
21
10
36
1.86
20257--20359
52
2.0
51
86
5
145
33
25
7
33
1.84
20291--20441
78
1.9
79
87
4
225
30
27
12
29
1.93
20370--20544
51
3.4
51
83
4
235
29
25
12
33
1.92
20238--20569
181
1.8
181
88
3
506
30
25
11
32
1.91
20527--20600
28
2.6
28
93
4
123
21
29
22
25
1.99
20478--20680
107
1.9
108
84
1
273
27
26
15
31
1.96
20555--20789
80
2.9
77
72
11
206
28
25
14
31
1.95
22743--22817
1
75.0
1
90
0
105
93
0
1
5
0.40
22740--22812
25
3.0
25
90
7
116
89
0
2
8
0.59
22743--22817
24
3.2
24
88
3
116
93
0
1
5
0.40
22822--22878
21
2.7
21
97
0
105
33
10
19
36
1.86
22934--23001
19
3.9
19
78
21
85
35
11
14
38
1.83
22955--22979
13
1.9
13
100
0
50
36
16
16
32
1.90
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
22936--22998
32
2.0
32
96
0
117
34
12
15
36
1.86
23041--23066
13
2.0
13
100
0
52
30
15
15
38
1.88
23021--23087
33
2.0
33
88
0
98
25
14
16
43
1.86
25554--25723
52
3.3
51
79
12
186
29
24
12
32
1.93
25707--25783
28
2.8
28
87
0
100
23
33
19
23
1.97
25436--25830
212
1.8
213
83
6
528
29
26
13
30
1.94

Tables:   1

The End!