genome.fa.s1009.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold1009
Parameters: 2 7 7 80 10 50 1000
Length:  25281

Tables:   1   

This is table  1  of  1  ( 43 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1418--1472	21	2.6	21	97	0	101	34	9	16	40	1.80
1512--1568	13	3.9	13	76	24	60	35	14	17	33	1.90
1525--1587	19	3.7	18	76	24	73	33	12	17	36	1.88
1511--1595	32	2.7	32	96	0	152	32	14	17	35	1.90
1619--1643	13	1.9	13	100	0	50	32	16	16	36	1.90
3830--3883	27	2.1	26	86	10	76	24	38	16	20	1.92
7635--7690	20	2.7	21	86	10	80	30	16	14	39	1.88
7675--7773	49	2.0	49	100	0	198	37	6	14	42	1.70
8306--8880	52	10.8	52	74	7	296	35	15	24	24	1.94
8277--8772	270	1.8	270	83	0	659	36	14	24	24	1.93
8277--8860	270	2.2	269	79	5	616	36	15	24	23	1.93
8943--9097	33	4.8	33	78	3	156	18	18	32	30	1.95
9102--9453	33	11.0	32	73	13	156	35	11	30	22	1.90
9196--9345	32	5.1	28	76	6	95	34	13	29	23	1.93
9196--9345	28	5.1	28	77	7	95	34	13	29	23	1.93
9251--9450	33	6.1	32	78	11	201	36	11	30	22	1.89
9251--9450	68	3.1	66	81	10	232	36	11	30	22	1.89
9428--9477	24	2.1	24	84	0	64	50	4	26	20	1.66
9361--9532	90	1.9	92	82	3	222	37	9	30	22	1.86
9520--9668	30	5.0	31	82	8	159	32	15	30	22	1.95
14732--14799	19	3.9	19	78	21	85	35	11	14	38	1.83
14734--14796	32	2.0	32	96	0	117	34	12	15	36	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14753--14777	13	1.9	13	100	0	50	36	16	16	32	1.90
14839--14864	13	2.0	13	100	0	52	30	15	15	38	1.88
14819--14885	33	2.0	33	88	0	98	25	14	16	43	1.86
16232--16376	31	4.7	31	83	6	179	26	28	18	26	1.98
16232--16396	62	2.6	62	83	7	201	25	28	16	29	1.97
16229--16514	94	3.0	94	78	8	245	23	31	15	30	1.95
16232--16474	62	3.9	61	78	10	188	24	30	16	28	1.96
16356--17290	34	27.8	33	84	9	1005	20	33	12	33	1.90
16354--17290	105	9.3	102	84	10	1042	20	33	12	33	1.90
16867--17153	33	9.1	28	75	15	128	20	35	13	30	1.91
17292--17370	32	2.5	32	89	4	126	29	37	15	17	1.90
17363--17835	49	9.7	49	90	3	726	25	25	18	30	1.98
17654--17844	43	4.1	43	78	15	193	25	24	17	32	1.97
17654--17844	95	2.0	94	91	5	307	25	24	17	32	1.97
17745--17898	52	2.9	53	80	6	186	24	23	15	36	1.94
18517--18583	37	1.9	35	88	11	102	29	25	11	32	1.92
19042--19067	13	2.0	13	100	0	52	30	15	15	38	1.88
20718--20742	13	1.9	13	100	0	50	32	16	16	36	1.90
21329--21375	23	2.0	24	84	12	62	61	19	4	14	1.49
23930--23996	37	1.9	35	88	11	102	29	25	11	32	1.92
24455--24480	13	2.0	13	100	0	52	30	15	15	38	1.88

Tables:   1

The End!