Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Scaffold101
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 827217
ACGTcount: A:0.34, C:0.14, G:0.14, T:0.34
Warning! 25308 characters in sequence are not A, C, G, or T
File 6 of 6
Found at i:741983 original size:35 final size:36
Alignment explanation
Indices: 741942--742014 Score: 139
Period size: 35 Copynumber: 2.1 Consensus size: 36
741932 TTTGTCGAAA
741942 TTGTCAACTATGAACTATATATTTGT-GGGGTTTTT
1 TTGTCAACTATGAACTATATATTTGTGGGGGTTTTT
741977 TTGTCAACTATGAACTATATATTTGTGGGGGTTTTT
1 TTGTCAACTATGAACTATATATTTGTGGGGGTTTTT
742013 TT
1 TT
742015 TTGTTCTTTT
Statistics
Matches: 37, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
35 26 0.70
36 11 0.30
ACGTcount: A:0.22, C:0.08, G:0.21, T:0.49
Consensus pattern (36 bp):
TTGTCAACTATGAACTATATATTTGTGGGGGTTTTT
Found at i:747135 original size:2 final size:2
Alignment explanation
Indices: 747128--747168 Score: 82
Period size: 2 Copynumber: 20.5 Consensus size: 2
747118 ATTCATGGCC
747128 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
747169 GTAGGAAATA
Statistics
Matches: 39, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 39 1.00
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (2 bp):
TA
Found at i:751827 original size:18 final size:19
Alignment explanation
Indices: 751792--751835 Score: 63
Period size: 19 Copynumber: 2.4 Consensus size: 19
751782 TTGTAATTAA
751792 ATTTAAATAAAAATATATT
1 ATTTAAATAAAAATATATT
*
751811 ATTTAATTAAAAA-ATATT
1 ATTTAAATAAAAATATATT
*
751829 TTTTAAA
1 ATTTAAA
751836 GTTAAAATGA
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
18 10 0.45
19 12 0.55
ACGTcount: A:0.55, C:0.00, G:0.00, T:0.45
Consensus pattern (19 bp):
ATTTAAATAAAAATATATT
Found at i:753659 original size:19 final size:19
Alignment explanation
Indices: 753637--753677 Score: 73
Period size: 19 Copynumber: 2.2 Consensus size: 19
753627 ATCCAATGCT
*
753637 TTAAAAATTATAAATAAAG
1 TTAAAAATCATAAATAAAG
753656 TTAAAAATCATAAATAAAG
1 TTAAAAATCATAAATAAAG
753675 TTA
1 TTA
753678 TTAACTTTAC
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
19 21 1.00
ACGTcount: A:0.61, C:0.02, G:0.05, T:0.32
Consensus pattern (19 bp):
TTAAAAATCATAAATAAAG
Found at i:763058 original size:13 final size:14
Alignment explanation
Indices: 763031--763063 Score: 50
Period size: 13 Copynumber: 2.4 Consensus size: 14
763021 TAATATTAAT
763031 ATAATAAATAATTA
1 ATAATAAATAATTA
*
763045 ATAA-AAATATTTA
1 ATAATAAATAATTA
763058 ATAATA
1 ATAATA
763064 TTATTTTTAA
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
13 12 0.71
14 5 0.29
ACGTcount: A:0.64, C:0.00, G:0.00, T:0.36
Consensus pattern (14 bp):
ATAATAAATAATTA
Found at i:763082 original size:38 final size:37
Alignment explanation
Indices: 763011--763090 Score: 99
Period size: 38 Copynumber: 2.1 Consensus size: 37
763001 CTCGTTACAC
*
763011 AAAATTTTAATAATATTAATATAATAAATAATTAATA
1 AAAATTTTAATAATATTAATATAATAAATAATTAAAA
* * *
763048 AAAATATTTAATAATATTATTTTTAATTAA-AATTAAAA
1 AAAAT-TTTAATAATATTA-ATATAATAAATAATTAAAA
763086 AAAAT
1 AAAAT
763091 CAAATTTTGA
Statistics
Matches: 37, Mismatches: 4, Indels: 3
0.84 0.09 0.07
Matches are distributed among these distances:
37 5 0.14
38 25 0.68
39 7 0.19
ACGTcount: A:0.59, C:0.00, G:0.00, T:0.41
Consensus pattern (37 bp):
AAAATTTTAATAATATTAATATAATAAATAATTAAAA
Found at i:768563 original size:30 final size:29
Alignment explanation
Indices: 768537--768591 Score: 76
Period size: 28 Copynumber: 1.9 Consensus size: 29
768527 TATTATTAAT
768537 AAAAATAATTATACA-TTAAATTTTATTA
1 AAAAATAATTATACATTTAAATTTTATTA
* **
768565 AATAATAATTATGTATTTAAATTTTAT
1 AAAAATAATTATACATTTAAATTTTAT
768592 ATTTAAAATT
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
28 12 0.52
29 11 0.48
ACGTcount: A:0.49, C:0.02, G:0.02, T:0.47
Consensus pattern (29 bp):
AAAAATAATTATACATTTAAATTTTATTA
Found at i:768574 original size:28 final size:28
Alignment explanation
Indices: 768536--768591 Score: 78
Period size: 29 Copynumber: 2.0 Consensus size: 28
768526 TTATTATTAA
768536 TAAAAATAATTATACA-TTAAATTTTAT
1 TAAAAATAATTATACATTTAAATTTTAT
**
768563 TAAATAATAATTATGTATTTAAATTTTAT
1 TAAA-AATAATTATACATTTAAATTTTAT
768592 ATTTAAAATT
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
27 4 0.16
28 10 0.40
29 11 0.44
ACGTcount: A:0.48, C:0.02, G:0.02, T:0.48
Consensus pattern (28 bp):
TAAAAATAATTATACATTTAAATTTTAT
Found at i:769970 original size:23 final size:23
Alignment explanation
Indices: 769903--769997 Score: 93
Period size: 23 Copynumber: 4.0 Consensus size: 23
769893 ATATATAAAT
*
769903 ATATAAAAAAT-AATATGAAGATA
1 ATATAAAAAATAAATATG-ATATA
* * **
769926 ACATAAAAATTAAATAAAATATA
1 ATATAAAAAATAAATATGATATA
769949 ATATAAAAAATAAATATGATATGA
1 ATATAAAAAATAAATATGATAT-A
* *
769973 ATGTAAAAATAAAAATATGATATA
1 ATATAAAAA-ATAAATATGATATA
769997 A
1 A
769998 ATTTATAATA
Statistics
Matches: 58, Mismatches: 11, Indels: 5
0.78 0.15 0.07
Matches are distributed among these distances:
23 31 0.53
24 15 0.26
25 12 0.21
ACGTcount: A:0.65, C:0.01, G:0.06, T:0.27
Consensus pattern (23 bp):
ATATAAAAAATAAATATGATATA
Found at i:770171 original size:17 final size:17
Alignment explanation
Indices: 770149--770196 Score: 71
Period size: 17 Copynumber: 2.8 Consensus size: 17
770139 TAACTAATAT
770149 TTTTTCTCTTTTTTTTC
1 TTTTTCTCTTTTTTTTC
*
770166 TTTTTCTCTTTATTTTC
1 TTTTTCTCTTTTTTTTC
770183 TTTCTTCT-TTTTTT
1 TTT-TTCTCTTTTTT
770197 CTCTCCTTTC
Statistics
Matches: 28, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
17 24 0.86
18 4 0.14
ACGTcount: A:0.02, C:0.17, G:0.00, T:0.81
Consensus pattern (17 bp):
TTTTTCTCTTTTTTTTC
Found at i:770196 original size:15 final size:16
Alignment explanation
Indices: 770151--770198 Score: 64
Period size: 15 Copynumber: 3.1 Consensus size: 16
770141 ACTAATATTT
770151 TTTCTCT-TTTTTTTC
1 TTTCTCTCTTTTTTTC
*
770166 TTTTTCTCTTTATTTTC
1 TTTCTCTCTTT-TTTTC
770183 TTTCT-TCTTTTTTTC
1 TTTCTCTCTTTTTTTC
770198 T
1 T
770199 CTCCTTTCTC
Statistics
Matches: 29, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
15 12 0.41
16 8 0.28
17 9 0.31
ACGTcount: A:0.02, C:0.19, G:0.00, T:0.79
Consensus pattern (16 bp):
TTTCTCTCTTTTTTTC
Found at i:773581 original size:3 final size:3
Alignment explanation
Indices: 773573--773605 Score: 66
Period size: 3 Copynumber: 11.0 Consensus size: 3
773563 TATAATTAAC
773573 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
773606 GTTGTTGTTG
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 30 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (3 bp):
ATT
Found at i:773722 original size:2 final size:2
Alignment explanation
Indices: 773715--773741 Score: 54
Period size: 2 Copynumber: 13.5 Consensus size: 2
773705 GGAGATAAGC
773715 AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT A
773742 GAGAGAGAGA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 25 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:775406 original size:22 final size:22
Alignment explanation
Indices: 775381--775424 Score: 72
Period size: 22 Copynumber: 2.0 Consensus size: 22
775371 AGTTGAATTT
775381 GTGATACATACATA-TAATTATA
1 GTGATACATACATACT-ATTATA
775403 GTGATACATACATACTATTATA
1 GTGATACATACATACTATTATA
775425 CTCATGTGTA
Statistics
Matches: 21, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
22 20 0.95
23 1 0.05
ACGTcount: A:0.43, C:0.11, G:0.09, T:0.36
Consensus pattern (22 bp):
GTGATACATACATACTATTATA
Found at i:775512 original size:19 final size:19
Alignment explanation
Indices: 775490--775527 Score: 67
Period size: 19 Copynumber: 2.0 Consensus size: 19
775480 GAAAAGCTTG
775490 ATTCTCTTTGTGAAGGGTT
1 ATTCTCTTTGTGAAGGGTT
*
775509 ATTCTTTTTGTGAAGGGTT
1 ATTCTCTTTGTGAAGGGTT
775528 GGTTTAGGGT
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.16, C:0.08, G:0.26, T:0.50
Consensus pattern (19 bp):
ATTCTCTTTGTGAAGGGTT
Found at i:776501 original size:15 final size:14
Alignment explanation
Indices: 776454--776494 Score: 64
Period size: 15 Copynumber: 2.9 Consensus size: 14
776444 CCAATTTAGA
776454 AAAGCAACTTTAAT
1 AAAGCAACTTTAAT
*
776468 AAAGCAATTTTCAAT
1 AAAGCAACTTT-AAT
776483 AAAGCAACTTTA
1 AAAGCAACTTTA
776495 GGTAAAGTGT
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
14 11 0.46
15 13 0.54
ACGTcount: A:0.49, C:0.15, G:0.07, T:0.29
Consensus pattern (14 bp):
AAAGCAACTTTAAT
Found at i:781305 original size:16 final size:16
Alignment explanation
Indices: 781284--781342 Score: 50
Period size: 16 Copynumber: 3.8 Consensus size: 16
781274 ATTAAAAATA
*
781284 ATTAAATTATATTTAT
1 ATTAAATTATAATTAT
*
781300 ATTAAA-AATAAATTAT
1 ATTAAATTAT-AATTAT
* *
781316 -TAAAATTATAGTTAT
1 ATTAAATTATAATTAT
*
781331 ATTAAATAATAA
1 ATTAAATTATAA
781343 AATATATAAA
Statistics
Matches: 32, Mismatches: 8, Indels: 6
0.70 0.17 0.13
Matches are distributed among these distances:
15 11 0.34
16 21 0.66
ACGTcount: A:0.54, C:0.00, G:0.02, T:0.44
Consensus pattern (16 bp):
ATTAAATTATAATTAT
Found at i:781325 original size:31 final size:32
Alignment explanation
Indices: 781204--781353 Score: 115
Period size: 31 Copynumber: 4.4 Consensus size: 32
781194 TGTATATATG
*
781204 ATAAATTATTAAAAATATAGTTATATTAAATA
1 ATAAATTATTAAAATTATAGTTATATTAAATA
* * * * *
781236 ATAAAATATAACTAAATTTATATTTACATTGACTAACA
1 AT-AAAT-T-ATTAAAATTATAGTTATATT-A--AATA
* *
781274 ATTAAAAATAATT-AAATTATATTTATATTAAA-A
1 A-T--AAATTATTAAAATTATAGTTATATTAAATA
781307 ATAAATTATTAAAATTATAGTTATATTAAATA
1 ATAAATTATTAAAATTATAGTTATATTAAATA
*
781339 ATAAAATATATAAAA
1 ATAAATTAT-TAAAA
781354 AAACTAAAAA
Statistics
Matches: 94, Mismatches: 13, Indels: 21
0.73 0.10 0.16
Matches are distributed among these distances:
30 7 0.07
31 18 0.19
32 12 0.13
33 11 0.12
34 3 0.03
35 15 0.16
36 2 0.02
37 14 0.15
38 6 0.06
39 1 0.01
40 5 0.05
ACGTcount: A:0.56, C:0.03, G:0.02, T:0.39
Consensus pattern (32 bp):
ATAAATTATTAAAATTATAGTTATATTAAATA
Found at i:781335 original size:17 final size:17
Alignment explanation
Indices: 781287--781336 Score: 52
Period size: 17 Copynumber: 3.1 Consensus size: 17
781277 AAAAATAATT
*
781287 AAATTATATTTATATTA
1 AAATTATAATTATATTA
*
781304 AAA--ATAAAT-TATTA
1 AAATTATAATTATATTA
*
781318 AAATTATAGTTATATTA
1 AAATTATAATTATATTA
781335 AA
1 AA
781337 TAATAAAATA
Statistics
Matches: 26, Mismatches: 4, Indels: 6
0.72 0.11 0.17
Matches are distributed among these distances:
14 8 0.31
15 4 0.15
16 4 0.15
17 10 0.38
ACGTcount: A:0.54, C:0.00, G:0.02, T:0.44
Consensus pattern (17 bp):
AAATTATAATTATATTA
Found at i:781345 original size:37 final size:37
Alignment explanation
Indices: 781204--781351 Score: 109
Period size: 35 Copynumber: 4.2 Consensus size: 37
781194 TGTATATATG
* *
781204 ATAAATTATTAAAAATATAGTTATATTAAATAATAAA
1 ATAAATAATTAAAATTATAGTTATATTAAATAATAAA
* * * * * * *
781241 AT--ATAACTAAATTTATATTTACATTGACTAACAATTA
1 ATAAATAATTAAAATTATAGTTATATTAAATAATAA--A
*
781278 A-AAATAATT-AAATTATATTTATATTAAA-AAT-AA
1 ATAAATAATTAAAATTATAGTTATATTAAATAATAAA
781311 AT---T-ATTAAAATTATAGTTATATTAAATAATAAA
1 ATAAATAATTAAAATTATAGTTATATTAAATAATAAA
*
781344 ATATATAA
1 ATAAATAA
781352 AAAAACTAAA
Statistics
Matches: 83, Mismatches: 16, Indels: 24
0.67 0.13 0.20
Matches are distributed among these distances:
30 3 0.04
31 19 0.23
32 3 0.04
33 6 0.07
35 24 0.29
36 3 0.04
37 20 0.24
38 5 0.06
ACGTcount: A:0.55, C:0.03, G:0.02, T:0.40
Consensus pattern (37 bp):
ATAAATAATTAAAATTATAGTTATATTAAATAATAAA
Found at i:782074 original size:32 final size:32
Alignment explanation
Indices: 782038--782122 Score: 143
Period size: 32 Copynumber: 2.7 Consensus size: 32
782028 TTTCAACGAT
*
782038 TTGTATCGATACAATGAATCGATACATAAGTG
1 TTGTATCGATACAATGTATCGATACATAAGTG
* *
782070 TTGTATCGATACAATGTATCGATATATAAGTT
1 TTGTATCGATACAATGTATCGATACATAAGTG
782102 TTGTATCGATACAATGTATCG
1 TTGTATCGATACAATGTATCG
782123 CTACGAAGCT
Statistics
Matches: 50, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
32 50 1.00
ACGTcount: A:0.34, C:0.12, G:0.18, T:0.36
Consensus pattern (32 bp):
TTGTATCGATACAATGTATCGATACATAAGTG
Found at i:782079 original size:19 final size:18
Alignment explanation
Indices: 782055--782114 Score: 58
Period size: 19 Copynumber: 3.5 Consensus size: 18
782045 GATACAATGA
782055 ATCGATACATAAGTGTTGT
1 ATCGATACATAAGT-TTGT
782074 ATCGATAC--AA---TGT
1 ATCGATACATAAGTTTGT
*
782087 ATCGATATATAAGTTTTGT
1 ATCGATACATAAG-TTTGT
782106 ATCGATACA
1 ATCGATACA
782115 ATGTATCGCT
Statistics
Matches: 33, Mismatches: 2, Indels: 12
0.70 0.04 0.26
Matches are distributed among these distances:
13 10 0.30
15 2 0.06
17 2 0.06
19 19 0.58
ACGTcount: A:0.35, C:0.12, G:0.17, T:0.37
Consensus pattern (18 bp):
ATCGATACATAAGTTTGT
Found at i:786906 original size:33 final size:33
Alignment explanation
Indices: 786869--786935 Score: 98
Period size: 33 Copynumber: 2.0 Consensus size: 33
786859 TTCAACGATT
786869 TGTATCGATACATAAAATGTTGTATCGATACAA
1 TGTATCGATACATAAAATGTTGTATCGATACAA
*** *
786902 TGTATCGATACATATTTTTTTGTATCGATACAA
1 TGTATCGATACATAAAATGTTGTATCGATACAA
786935 T
1 T
786936 TTAAGCTACT
Statistics
Matches: 30, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
33 30 1.00
ACGTcount: A:0.34, C:0.12, G:0.13, T:0.40
Consensus pattern (33 bp):
TGTATCGATACATAAAATGTTGTATCGATACAA
Found at i:786907 original size:13 final size:13
Alignment explanation
Indices: 786889--786913 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
786879 CATAAAATGT
786889 TGTATCGATACAA
1 TGTATCGATACAA
786902 TGTATCGATACA
1 TGTATCGATACA
786914 TATTTTTTTG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.36, C:0.16, G:0.16, T:0.32
Consensus pattern (13 bp):
TGTATCGATACAA
Found at i:786994 original size:13 final size:13
Alignment explanation
Indices: 786976--787000 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
786966 ATTACTCAAA
786976 TGTATCGATACAT
1 TGTATCGATACAT
786989 TGTATCGATACA
1 TGTATCGATACA
787001 CTGATCTTTG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.36
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:787102 original size:52 final size:52
Alignment explanation
Indices: 787009--787136 Score: 215
Period size: 52 Copynumber: 2.5 Consensus size: 52
786999 CACTGATCTT
*
787009 TGTATCGATACATGCAGGC-AATTTGCCCAGATGTATCGATACA-TTTTAAAA
1 TGTATCGATACATGCAGGCAAATTTGCCCAGATGTATCGATACACTATT-AAA
*
787060 TGTATCGATACATGCAGGCAAATTTGCCCAGATGTATCGATACACTATTCAA
1 TGTATCGATACATGCAGGCAAATTTGCCCAGATGTATCGATACACTATTAAA
787112 TGTATCGATACATGCAGGCAAATTT
1 TGTATCGATACATGCAGGCAAATTT
787137 TCATATTTCG
Statistics
Matches: 73, Mismatches: 2, Indels: 3
0.94 0.03 0.04
Matches are distributed among these distances:
51 19 0.26
52 51 0.70
53 3 0.04
ACGTcount: A:0.33, C:0.19, G:0.18, T:0.30
Consensus pattern (52 bp):
TGTATCGATACATGCAGGCAAATTTGCCCAGATGTATCGATACACTATTAAA
Found at i:790383 original size:21 final size:21
Alignment explanation
Indices: 790358--790400 Score: 86
Period size: 21 Copynumber: 2.0 Consensus size: 21
790348 CATGTCAGGA
790358 GCATCTCGTCATGCAATGAAT
1 GCATCTCGTCATGCAATGAAT
790379 GCATCTCGTCATGCAATGAAT
1 GCATCTCGTCATGCAATGAAT
790400 G
1 G
790401 TCATTTTGAT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 22 1.00
ACGTcount: A:0.28, C:0.23, G:0.21, T:0.28
Consensus pattern (21 bp):
GCATCTCGTCATGCAATGAAT
Found at i:795354 original size:31 final size:32
Alignment explanation
Indices: 795313--795453 Score: 168
Period size: 31 Copynumber: 4.6 Consensus size: 32
795303 TAAAAAAAAG
795313 GTCCACGACTCAGTGGCAATCTCT-TCTCAAA
1 GTCCACGACTCAGTGGCAATCTCTCTCTCAAA
* *
795344 GTCCATGACTCAGTGGCAATCTCT-GCTCAAA
1 GTCCACGACTCAGTGGCAATCTCTCTCTCAAA
* *
795375 GTCCACGACGCAGTGGC-ATCT-TCTCTTTAAA
1 GTCCACGACTCAGTGGCAATCTCTCTC-TCAAA
* *
795406 GTCCACGACTCAGTGGC-AT-TTTGTCTCAAA
1 GTCCACGACTCAGTGGCAATCTCTCTCTCAAA
*
795436 GTCCATGACTCAGTGGCA
1 GTCCACGACTCAGTGGCA
795454 CCTTTTTTCT
Statistics
Matches: 96, Mismatches: 10, Indels: 8
0.84 0.09 0.07
Matches are distributed among these distances:
29 1 0.01
30 26 0.27
31 69 0.72
ACGTcount: A:0.24, C:0.29, G:0.20, T:0.27
Consensus pattern (32 bp):
GTCCACGACTCAGTGGCAATCTCTCTCTCAAA
Found at i:795570 original size:34 final size:32
Alignment explanation
Indices: 795443--795974 Score: 481
Period size: 34 Copynumber: 16.5 Consensus size: 32
795433 AAAGTCCATG
*
795443 ACTCAGTGGCACCTTTTTT-CTTTAAAGCCCACA
1 ACTCCGTGGCA-CTTTTTTCCTTT-AAGCCCACA
* * *
795476 ACTCCGTGGCACCTTATTCCGTTTAAGTCCACA
1 ACTCCGTGGCACTTTTTTCC-TTTAAGCCCACA
** *
795509 ACTCCGTGGCAC--CCTT--TTAAAGCCCACA
1 ACTCCGTGGCACTTTTTTCCTTTAAGCCCACA
* *
795537 ATTCCGTGGCACTTTTTTCATCTTTAAGTCCACA
1 ACTCCGTGGCACTTTTTTC--CTTTAAGCCCACA
795571 ACTCCGTGGCAC------CCGTTTAAGCCCACA
1 ACTCCGTGGCACTTTTTTCC-TTTAAGCCCACA
* *
795598 ACTCCGTGGCACCTTTTTCTTTTAAGCCCACA
1 ACTCCGTGGCACTTTTTTCCTTTAAGCCCACA
* *
795630 ACTCCGTGGCACCTTTTTCTTTTAAAGCCCACA
1 ACTCCGTGGCACTTTTTTCCTTT-AAGCCCACA
* * *
795663 ACTCCGTGGCACCTTCTTCTTTTCAAAGCCCACA
1 ACTCCGTGGCACTTTTTTCCTTT--AAGCCCACA
* *
795697 ACTCCGTGGCAC------CCTTTTAAGTCCACG
1 ACTCCGTGGCACTTTTTTCC-TTTAAGCCCACA
* *
795724 ACTACGTGGCACTCTTTTCCTTTAAAGCCCACA
1 ACTCCGTGGCACTTTTTTCCTTT-AAGCCCACA
* *
795757 ACTACGTGGCACTCTTTTCCTTCTAAGCCCACA
1 ACTCCGTGGCACTTTTTTCCTT-TAAGCCCACA
795790 ACTCCGTGGCACTCTTTTTCCTTCTAAGCCCACA
1 ACTCCGTGGCACT-TTTTTCCTT-TAAGCCCACA
795824 ACTCCGTGGCACTCTTTTTCCTTCTAAGCCCACA
1 ACTCCGTGGCACT-TTTTTCCTT-TAAGCCCACA
795858 ACTCCGTGGCACTCTTTTTCCTTCTAAGCCCACA
1 ACTCCGTGGCACT-TTTTTCCTT-TAAGCCCACA
795892 ACTCCGTGGCACTCTTTTTTCCCTTTTAAAGCCCACA
1 ACTCCGTGGCA--CTTTTTT-CC-TTT-AAGCCCACA
* * *
795929 ACTCCGTGGCACCTTGTT--TTTAAGTCCACA
1 ACTCCGTGGCACTTTTTTCCTTTAAGCCCACA
*
795959 ACTTCGTGGCATCTTT
1 ACTCCGTGGCA-CTTT
795975 CACCCTTTCT
Statistics
Matches: 436, Mismatches: 30, Indels: 68
0.82 0.06 0.13
Matches are distributed among these distances:
26 1 0.00
27 41 0.09
28 23 0.05
29 3 0.01
30 20 0.05
31 8 0.02
32 43 0.10
33 115 0.26
34 145 0.33
35 10 0.02
36 5 0.01
37 22 0.05
ACGTcount: A:0.20, C:0.35, G:0.13, T:0.32
Consensus pattern (32 bp):
ACTCCGTGGCACTTTTTTCCTTTAAGCCCACA
Found at i:796061 original size:33 final size:32
Alignment explanation
Indices: 795976--796089 Score: 160
Period size: 33 Copynumber: 3.5 Consensus size: 32
795966 GGCATCTTTC
*
795976 ACCCTTTCTAAAGCCCACACAAGTCGGTGGCAA
1 ACCCTCTCTAAAGCCCACACAAGTCGGTGGC-A
* *
796009 ACCTTCTTCCAAAGCCCACACAAGTCGGTGGCA
1 ACCCTC-TCTAAAGCCCACACAAGTCGGTGGCA
796042 ACCACTCTCTAAAGCCCACACAAGTCGGTGGCA
1 ACC-CTCTCTAAAGCCCACACAAGTCGGTGGCA
796075 ACCCT-TCT-AAGCCCA
1 ACCCTCTCTAAAGCCCA
796090 ATATAGCTGG
Statistics
Matches: 74, Mismatches: 5, Indels: 7
0.86 0.06 0.08
Matches are distributed among these distances:
30 7 0.09
31 3 0.04
32 2 0.03
33 36 0.49
34 26 0.35
ACGTcount: A:0.29, C:0.37, G:0.17, T:0.18
Consensus pattern (32 bp):
ACCCTCTCTAAAGCCCACACAAGTCGGTGGCA
Found at i:796423 original size:189 final size:192
Alignment explanation
Indices: 796082--797408 Score: 1744
Period size: 189 Copynumber: 6.9 Consensus size: 192
796072 GCAACCCTTC
* * * * *
796082 TAAGCCCAATATAGCTGGCCCTGAATCAGCATATTGGCACCTTCATCTTTAAGTCCGATGTAGCT
1 TAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCACC-TCA--TTTAAGTCCAATGTAGCT
* * *
796147 GGCCTTGACTCAGCACATTGGCACCTTCACCATTAAGTCCAATATAGCTGGCCTTGAATCAGCAT
63 GGCCTTGACTCAGCACATTGGCACCTTCA-CTTTAAGTCCAATGTAGCTGGCCTTGAATCAGCAC
796212 ATTGGCACCTTCATCTTTAAGTCCAATGTAGCTGGCCTTGACTCAGCACATTGGCACC-TCA-CT
127 ATTGGCACCTTCATCTTTAAGTCCAATGTAGCTGGCCTTGACTCAGCACATTGGCACCTTCATC-
796275 TT
191 TT
* *
796277 TAAGTCCAATGTAGCTGGCCTTGACTCAGCACATTGGCA-C-CA-TTAAGTCCAATATAGCTGGC
1 TAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCACCTCATTTAAGTCCAATGTAGCTGGC
* * * *
796339 CTTGAATCAGCATATTGGCACCTTTATCTTTAAGTCCAATGTAGCTGGCCTTGACTCAGCACATT
66 CTTGACTCAGCACATTGGCACCTTCA-CTTTAAGTCCAATGTAGCTGGCCTTGAATCAGCACATT
* * * * *
796404 GGCACCTTCACCATTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTCATCTT
130 GGCACCTTCATCTTTAAGTCCAATGTAGCTGGCCTTGACTCAGCACATTGGCACCTTCATCTT
*
796467 TAAGTCCAATGTAGCTGGCCTTGACTCAGCACATTGGCACCTCACTTTTAAGTCCAATGTAGCTG
1 TAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCACCTCA--TTTAAGTCCAATGTAGCTG
* *
796532 GCCTTGACTCAGCACATTGGCA-C--CA--TTAAGTCCAATATAGCTGGCCTTGAATCAGCATAT
64 GCCTTGACTCAGCACATTGGCACCTTCACTTTAAGTCCAATGTAGCTGGCCTTGAATCAGCACAT
* * * *
796592 TGGCACCTTTATCTTTAAGTCCAATGTAGCTGGCCTTAACTCAGCACATTGGCACCTTCACCAT
129 TGGCACCTTCATCTTTAAGTCCAATGTAGCTGGCCTTGACTCAGCACATTGGCACCTTCATCTT
* *
796656 TAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTCATCTTTAAGTCCAATGTAGCT
1 TAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCACC-TCA--TTTAAGTCCAATGTAGCT
*
796721 GGCCTTGACTCAGCACATTGGCACC-TCACTTTTAAGTCCAATGTAGCTGGCCTTGACTCAGCAC
63 GGCCTTGACTCAGCACATTGGCACCTTCAC-TTTAAGTCCAATGTAGCTGGCCTTGAATCAGCAC
* * * * *
796785 ATTGGCA-C--CA---TTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACTTTTATCT
127 ATTGGCACCTTCATCTTTAAGTCCAATGTAGCTGGCCTTGACTCAGCACATTGGCACCTTCATCT
796844 T
192 T
* * *
796845 TAAGTCCAATGTAGCTGGCCTTGACTCAGCACATTGGCACCTTCACCATTAAGTCCAATATAGCT
1 TAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCACC-TCA--TTTAAGTCCAATGTAGCT
* * *
796910 GGCCTTGAATCAGCATATTGGCACCTTCATCTTTAAGTCCAATGTAGCTGGCCTTGACTCAGCAC
63 GGCCTTGACTCAGCACATTGGCACCTTCA-CTTTAAGTCCAATGTAGCTGGCCTTGAATCAGCAC
796975 ATTGGCACC-TCA-CTTTTAAGTCCAATGTAGCTGGCCTTGACTCAGCACATTGGCA-C--CA--
127 ATTGGCACCTTCATC-TTTAAGTCCAATGTAGCTGGCCTTGACTCAGCACATTGGCACCTTCATC
797033 -T
191 TT
* * *
797034 TAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTTATCTTTAAGTCCAATGTAGCT
1 TAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCACC-TCA--TTTAAGTCCAATGTAGCT
*
797099 GGCCTTGACTCAGCACATTGGCACCTTCACCATTAAGTCCAATGTAGCTGGCCTTGAATCAGCAC
63 GGCCTTGACTCAGCACATTGGCACCTTCA-CTTTAAGTCCAATGTAGCTGGCCTTGAATCAGCAC
797164 ATTGGCACC-TCATCTTTAAGTCCAATGTAGCTGGCCTTGACTCAGCACATTGGCACCTTTCATC
127 ATTGGCACCTTCATCTTTAAGTCCAATGTAGCTGGCCTTGACTCAGCACATTGGCACC-TTCATC
797228 TT
191 TT
797230 TAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCACCTCAACTTTAAGTCCAATGTAGCTG
1 TAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCACCTC-A-TTTAAGTCCAATGTAGCTG
* * *
797295 GCCTTGAATCAGCACATTGGCA----C-CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATAT
64 GCCTTGACTCAGCACATTGGCACCTTCACTTTAAGTCCAATGTAGCTGGCCTTGAATCAGCACAT
* * *
797355 CGGCACCTTTTCCATCTTTAAGTTCAATGTAGCTGGCCTTGAATCAGCACATTG
129 TGGCACC--TT-CATCTTTAAGTCCAATGTAGCTGGCCTTGACTCAGCACATTG
797409 ACATCCTTTT
Statistics
Matches: 1011, Mismatches: 88, Indels: 68
0.87 0.08 0.06
Matches are distributed among these distances:
189 586 0.58
190 134 0.13
191 6 0.01
192 12 0.01
193 42 0.04
194 3 0.00
195 187 0.18
196 41 0.04
ACGTcount: A:0.25, C:0.27, G:0.18, T:0.30
Consensus pattern (192 bp):
TAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCACCTCATTTAAGTCCAATGTAGCTGGC
CTTGACTCAGCACATTGGCACCTTCACTTTAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTG
GCACCTTCATCTTTAAGTCCAATGTAGCTGGCCTTGACTCAGCACATTGGCACCTTCATCTT
Found at i:796505 original size:238 final size:238
Alignment explanation
Indices: 796082--797408 Score: 2319
Period size: 238 Copynumber: 5.6 Consensus size: 238
796072 GCAACCCTTC
* * * *
796082 TAAGCCCAATATAGCTGGCCCTGAATCAGCATATTGGCACCTTCATCTTTAAGTCCGATGTAGCT
1 TAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTTATCTTTAAGTCCAATGTAGCT
796147 GGCCTTGACTCAGCACATTGGCACCTTCACCATTAAGTCCAATATAGCTGGCCTTGAATCAGCAT
66 GGCCTTGACTCAGCACATTGGCACCTTCACCATTAAGTCCAATATAGCTGGCCTTGAATCAGCAT
796212 ATTGGCACCTTCATCTTTAAGTCCAATGTAGCTGGCCTTGACTCAGCACATTGGCACCTCACTTT
131 ATTGGCACCTTCATCTTTAAGTCCAATGTAGCTGGCCTTGACTCAGCACATTGGCACCTCACTTT
796277 TAAGTCCAATGTAGCTGGCCTTGACTCAGCACATTGGCACCAT
196 TAAGTCCAATGTAGCTGGCCTTGACTCAGCACATTGGCACCAT
796320 TAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTTATCTTTAAGTCCAATGTAGCT
1 TAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTTATCTTTAAGTCCAATGTAGCT
796385 GGCCTTGACTCAGCACATTGGCACCTTCACCATTAAGTCCAATATAGCTGGCCTTGAATCAGCAT
66 GGCCTTGACTCAGCACATTGGCACCTTCACCATTAAGTCCAATATAGCTGGCCTTGAATCAGCAT
796450 ATTGGCACCTTCATCTTTAAGTCCAATGTAGCTGGCCTTGACTCAGCACATTGGCACCTCACTTT
131 ATTGGCACCTTCATCTTTAAGTCCAATGTAGCTGGCCTTGACTCAGCACATTGGCACCTCACTTT
796515 TAAGTCCAATGTAGCTGGCCTTGACTCAGCACATTGGCACCAT
196 TAAGTCCAATGTAGCTGGCCTTGACTCAGCACATTGGCACCAT
796558 TAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTTATCTTTAAGTCCAATGTAGCT
1 TAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTTATCTTTAAGTCCAATGTAGCT
*
796623 GGCCTTAACTCAGCACATTGGCACCTTCACCATTAAGTCCAATATAGCTGGCCTTGAATCAGCAT
66 GGCCTTGACTCAGCACATTGGCACCTTCACCATTAAGTCCAATATAGCTGGCCTTGAATCAGCAT
796688 ATTGGCACCTTCATCTTTAAGTCCAATGTAGCTGGCCTTGACTCAGCACATTGGCACCTCACTTT
131 ATTGGCACCTTCATCTTTAAGTCCAATGTAGCTGGCCTTGACTCAGCACATTGGCACCTCACTTT
796753 TAAGTCCAATGTAGCTGGCCTTGACTCAGCACATTGGCACCAT
196 TAAGTCCAATGTAGCTGGCCTTGACTCAGCACATTGGCACCAT
*
796796 TAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACTTTTATCTTTAAGTCCAATGTAGCT
1 TAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTTATCTTTAAGTCCAATGTAGCT
796861 GGCCTTGACTCAGCACATTGGCACCTTCACCATTAAGTCCAATATAGCTGGCCTTGAATCAGCAT
66 GGCCTTGACTCAGCACATTGGCACCTTCACCATTAAGTCCAATATAGCTGGCCTTGAATCAGCAT
796926 ATTGGCACCTTCATCTTTAAGTCCAATGTAGCTGGCCTTGACTCAGCACATTGGCACCTCACTTT
131 ATTGGCACCTTCATCTTTAAGTCCAATGTAGCTGGCCTTGACTCAGCACATTGGCACCTCACTTT
796991 TAAGTCCAATGTAGCTGGCCTTGACTCAGCACATTGGCACCAT
196 TAAGTCCAATGTAGCTGGCCTTGACTCAGCACATTGGCACCAT
797034 TAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTTATCTTTAAGTCCAATGTAGCT
1 TAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTTATCTTTAAGTCCAATGTAGCT
* *
797099 GGCCTTGACTCAGCACATTGGCACCTTCACCATTAAGTCCAATGTAGCTGGCCTTGAATCAGCAC
66 GGCCTTGACTCAGCACATTGGCACCTTCACCATTAAGTCCAATATAGCTGGCCTTGAATCAGCAT
797164 ATTGGCACC-TCATCTTTAAGTCCAATGTAGCTGGCCTTGACTCAGCACATTGGCACCTTTCA-T
131 ATTGGCACCTTCATCTTTAAGTCCAATGTAGCTGGCCTTGACTCAGCACATTGGCACC--TCACT
*
797227 CTTTAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCACCTCAACTT
194 -TTTAAGTCCAATGTAGCTGGCCTTGACTCAGCACATTGGCA-C-C-A--T
* * *
797278 TAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCA-C-----CTTTAAGTCCAATATAGCT
1 TAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTTATCTTTAAGTCCAATGTAGCT
* * * * * * *
797337 GGCCTTGAATCAGCATATCGGCACCTTTTCCATCTTTAAGTTCAATGTAGCTGGCCTTGAATCAG
66 GGCCTTGACTCAGCACATTGGCACC--TT-CACCATTAAGTCCAATATAGCTGGCCTTGAATCAG
*
797402 CACATTG
128 CATATTG
797409 ACATCCTTTT
Statistics
Matches: 1058, Mismatches: 20, Indels: 19
0.96 0.02 0.02
Matches are distributed among these distances:
237 48 0.05
238 884 0.84
239 43 0.04
240 3 0.00
241 40 0.04
242 1 0.00
243 1 0.00
244 38 0.04
ACGTcount: A:0.25, C:0.27, G:0.18, T:0.30
Consensus pattern (238 bp):
TAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTTATCTTTAAGTCCAATGTAGCT
GGCCTTGACTCAGCACATTGGCACCTTCACCATTAAGTCCAATATAGCTGGCCTTGAATCAGCAT
ATTGGCACCTTCATCTTTAAGTCCAATGTAGCTGGCCTTGACTCAGCACATTGGCACCTCACTTT
TAAGTCCAATGTAGCTGGCCTTGACTCAGCACATTGGCACCAT
Found at i:796612 original size:287 final size:286
Alignment explanation
Indices: 796082--797408 Score: 1804
Period size: 287 Copynumber: 4.6 Consensus size: 286
796072 GCAACCCTTC
* * * * * *
796082 TAAGCCCAATATAGCTGGCCCTGAATCAGCATATTGGCACCTTCATCTTTAAGTCCGATGTAGCT
1 TAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCACCTTCACCTTTAAGTCCAATGTAGCT
*
796147 GGCCTTGACTCAGCACATTGGCACCTTCACCATTAAGTCCAATATAGCTGGCCTTGAATCAGCAT
66 GGCCTTGACTCAGCACATTGGCACC-TCA-CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCAT
796212 ATTGGCACCTTCATCTTTAAGTCCAATGTAGCTGGCCTTGACTCAGCACATTGGCACCTCACTTT
129 ATTGGCACCTTCATCTTTAAGTCCAATGTAGCTGGCCTTGACTCAGCACATTGGCA-CTCA---T
*
796277 TAAGTCCAATGTAGCTGGCCTTGACTCAGCACATTGGCA-C-CA---TTAAGTCCAATATAGCTG
190 TAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCACCTCATCTTTAAGTCCAATATAGCTG
* *
796337 GCCTTGAATCAGCATATTGGCACCTTTATCTT
255 GCCTTGAATCAGCACATTGGCACCTTCATCTT
* * *
796369 TAAGTCCAATGTAGCTGGCCTTGACTCAGCACATTGGCACCTTCACCATTAAGTCCAATATAGCT
1 TAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCACCTTCACCTTTAAGTCCAATGTAGCT
* * * * *
796434 GGCCTTGAATCAGCATATTGGCACCTTCATCTTTAAGTCCAATGTAGCTGGCCTTGACTCAGCAC
66 GGCCTTGACTCAGCACATTGGCACC-TCA-CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCAT
796499 ATTGGCACC-TCA-CTTTTAAGTCCAATGTAGCTGGCCTTGACTCAGCACATTGGCAC-CATTAA
129 ATTGGCACCTTCATC-TTTAAGTCCAATGTAGCTGGCCTTGACTCAGCACATTGGCACTCATTAA
* * * *
796561 GTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTTATCTTTAAGTCCAATGTAGCTGGC
193 GTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCACC-TCATCTTTAAGTCCAATATAGCTGGC
* *
796626 CTT-AACTCAGCACATTGGCACCTTCACCAT
257 CTTGAA-TCAGCACATTGGCACCTTCATCTT
* * *
796656 TAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTCATCTTTAAGTCCAATGTAGCT
1 TAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCACCTTCACCTTTAAGTCCAATGTAGCT
* * *
796721 GGCCTTGACTCAGCACATTGGCACCTCACTTTTAAGTCCAATGTAGCTGGCCTTGACTCAGCACA
66 GGCCTTGACTCAGCACATTGGCACCTCAC-TTTAAGTCCAATATAGCTGGCCTTGAATCAGCATA
* * * *
796786 TTGGCA-C--CA---TTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACTTTTATCTT
130 TTGGCACCTTCATCTTTAAGTCCAATGTAGCTGGCCTTGACTCAGCACATTGGCAC-----TCAT
* * *
796845 TAAGTCCAATGTAGCTGGCCTTGACTCAGCACATTGGCACCTTCACCATTAAGTCCAATATAGCT
190 TAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCACC-TCATCTTTAAGTCCAATATAGCT
*
796910 GGCCTTGAATCAGCATATTGGCACCTTCATCTT
254 GGCCTTGAATCAGCACATTGGCACCTTCATCTT
* *
796943 TAAGTCCAATGTAGCTGGCCTTGACTCAGCACATTGGCACC-TCACTTTTAAGTCCAATGTAGCT
1 TAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCACCTTCACCTTTAAGTCCAATGTAGCT
797007 GGCCTTGACTCAGCACATTGGCA-C-CA--TTAAGTCCAATATAGCTGGCCTTGAATCAGCATAT
66 GGCCTTGACTCAGCACATTGGCACCTCACTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATAT
*
797068 TGGCACCTTTATCTTTAAGTCCAATGTAGCTGGCCTTGACTCAGCACATTGGCACCTTCACCATT
131 TGGCACCTTCATCTTTAAGTCCAATGTAGCTGGCCTTGACTCAGCACATTGGCA-C-T---CATT
*
797133 AAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCACCTCATCTTTAAGTCCAATGTAGCTGG
191 AAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCACCTCATCTTTAAGTCCAATATAGCTGG
*
797198 CCTTGACTCAGCACATTGGCACCTTTCATCTT
256 CCTTGAATCAGCACATTGGCACC-TTCATCTT
*
797230 TAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCACC-TCAACTTTAAGTCCAATGTAGCT
1 TAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCACCTTCACCTTTAAGTCCAATGTAGCT
*
797294 GGCCTTGAATCAGCACATTGGCA---C-CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATAT
66 GGCCTTGACTCAGCACATTGGCACCTCACTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATAT
* * *
797355 CGGCACCTTTTCCATCTTTAAGTTCAATGTAGCTGGCCTTGAATCAGCACATTG
131 TGGCACC--TT-CATCTTTAAGTCCAATGTAGCTGGCCTTGACTCAGCACATTG
797409 ACATCCTTTT
Statistics
Matches: 933, Mismatches: 75, Indels: 61
0.87 0.07 0.06
Matches are distributed among these distances:
281 112 0.12
282 2 0.00
284 9 0.01
285 5 0.01
286 178 0.19
287 583 0.62
288 3 0.00
289 2 0.00
290 39 0.04
ACGTcount: A:0.25, C:0.27, G:0.18, T:0.30
Consensus pattern (286 bp):
TAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCACCTTCACCTTTAAGTCCAATGTAGCT
GGCCTTGACTCAGCACATTGGCACCTCACTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATAT
TGGCACCTTCATCTTTAAGTCCAATGTAGCTGGCCTTGACTCAGCACATTGGCACTCATTAAGTC
CAATGTAGCTGGCCTTGAATCAGCACATTGGCACCTCATCTTTAAGTCCAATATAGCTGGCCTTG
AATCAGCACATTGGCACCTTCATCTT
Found at i:797362 original size:43 final size:43
Alignment explanation
Indices: 797227--797364 Score: 204
Period size: 43 Copynumber: 3.1 Consensus size: 43
797217 CACCTTTCAT
797227 CTTTAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCACCTC
1 CTTTAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCA---C
797273 AACTTTAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCAC
1 --CTTTAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCAC
* * *
797318 CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATCGGCAC
1 CTTTAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCAC
797361 CTTT
1 CTTT
797365 TCCATCTTTA
Statistics
Matches: 87, Mismatches: 3, Indels: 5
0.92 0.03 0.05
Matches are distributed among these distances:
43 44 0.51
45 1 0.01
48 42 0.48
ACGTcount: A:0.26, C:0.26, G:0.19, T:0.29
Consensus pattern (43 bp):
CTTTAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCAC
Found at i:797454 original size:56 final size:52
Alignment explanation
Indices: 797318--797456 Score: 161
Period size: 52 Copynumber: 2.6 Consensus size: 52
797308 ACATTGGCAC
* *
797318 CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATCGGCACCTTTTCCAT
1 CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCACATCGACACCTTTTCCAT
* * *
797370 CTTTAAGTTCAATGTAGCTGGCCTTGAATCAGCACATTGACATCCTTTTTCATCAT
1 CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCACATCGACA-CC-TTTTC--CAT
* * * *
797426 CTTTAAGCCCAATATCGTTGGCCGTGAATCA
1 CTTTAAGTCCAATATAGCTGGCCTTGAATCA
797457 ACATATTGGC
Statistics
Matches: 72, Mismatches: 11, Indels: 4
0.83 0.13 0.05
Matches are distributed among these distances:
52 37 0.51
53 2 0.03
54 5 0.07
56 28 0.39
ACGTcount: A:0.25, C:0.25, G:0.16, T:0.34
Consensus pattern (52 bp):
CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCACATCGACACCTTTTCCAT
Found at i:798323 original size:33 final size:33
Alignment explanation
Indices: 798286--798352 Score: 98
Period size: 33 Copynumber: 2.0 Consensus size: 33
798276 TTCAACGATT
798286 TGTATCGATACATAAAATGTTGTATCGATACAA
1 TGTATCGATACATAAAATGTTGTATCGATACAA
*** *
798319 TGTATCGATACATATTTTTTTGTATCGATACAA
1 TGTATCGATACATAAAATGTTGTATCGATACAA
798352 T
1 T
798353 TTAAGCTACT
Statistics
Matches: 30, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
33 30 1.00
ACGTcount: A:0.34, C:0.12, G:0.13, T:0.40
Consensus pattern (33 bp):
TGTATCGATACATAAAATGTTGTATCGATACAA
Found at i:798324 original size:13 final size:13
Alignment explanation
Indices: 798306--798330 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
798296 CATAAAATGT
798306 TGTATCGATACAA
1 TGTATCGATACAA
798319 TGTATCGATACA
1 TGTATCGATACA
798331 TATTTTTTTG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.36, C:0.16, G:0.16, T:0.32
Consensus pattern (13 bp):
TGTATCGATACAA
Found at i:798394 original size:21 final size:21
Alignment explanation
Indices: 798369--798427 Score: 118
Period size: 21 Copynumber: 2.8 Consensus size: 21
798359 TACTGCCAAA
798369 AAATGTATCGATACATTACTC
1 AAATGTATCGATACATTACTC
798390 AAATGTATCGATACATTACTC
1 AAATGTATCGATACATTACTC
798411 AAATGTATCGATACATT
1 AAATGTATCGATACATT
798428 GTATCGATAC
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 38 1.00
ACGTcount: A:0.39, C:0.17, G:0.10, T:0.34
Consensus pattern (21 bp):
AAATGTATCGATACATTACTC
Found at i:798432 original size:13 final size:13
Alignment explanation
Indices: 798414--798438 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
798404 ATTACTCAAA
798414 TGTATCGATACAT
1 TGTATCGATACAT
798427 TGTATCGATACA
1 TGTATCGATACA
798439 CTGATCTTTG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.36
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:798540 original size:52 final size:52
Alignment explanation
Indices: 798447--798574 Score: 215
Period size: 52 Copynumber: 2.5 Consensus size: 52
798437 CACTGATCTT
*
798447 TGTATCGATACATGCAGGC-AATTTGCCCAGATGTATCGATACA-TTTTAAAA
1 TGTATCGATACATGCAGGCAAATTTGCCCAGATGTATCGATACACTATT-AAA
*
798498 TGTATCGATACATGCAGGCAAATTTGCCCAGATGTATCGATACACTATTCAA
1 TGTATCGATACATGCAGGCAAATTTGCCCAGATGTATCGATACACTATTAAA
798550 TGTATCGATACATGCAGGCAAATTT
1 TGTATCGATACATGCAGGCAAATTT
798575 TCATATTTCG
Statistics
Matches: 73, Mismatches: 2, Indels: 3
0.94 0.03 0.04
Matches are distributed among these distances:
51 19 0.26
52 51 0.70
53 3 0.04
ACGTcount: A:0.33, C:0.19, G:0.18, T:0.30
Consensus pattern (52 bp):
TGTATCGATACATGCAGGCAAATTTGCCCAGATGTATCGATACACTATTAAA
Found at i:803163 original size:22 final size:22
Alignment explanation
Indices: 803138--803179 Score: 66
Period size: 22 Copynumber: 1.9 Consensus size: 22
803128 TTCTCATTTA
*
803138 TTAATAATTAATTTTAAATATG
1 TTAATAATTAATGTTAAATATG
*
803160 TTAATATTTAATGTTAAATA
1 TTAATAATTAATGTTAAATA
803180 AAACATTAAG
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
22 18 1.00
ACGTcount: A:0.45, C:0.00, G:0.05, T:0.50
Consensus pattern (22 bp):
TTAATAATTAATGTTAAATATG
Found at i:805380 original size:1 final size:1
Alignment explanation
Indices: 805376--805400 Score: 50
Period size: 1 Copynumber: 25.0 Consensus size: 1
805366 TTTTTTTTTT
805376 GGGGGGGGGGGGGGGGGGGGGGGGG
1 GGGGGGGGGGGGGGGGGGGGGGGGG
805401 CTGAGAATTG
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
1 24 1.00
ACGTcount: A:0.00, C:0.00, G:1.00, T:0.00
Consensus pattern (1 bp):
G
Found at i:808021 original size:50 final size:50
Alignment explanation
Indices: 807960--808123 Score: 292
Period size: 50 Copynumber: 3.3 Consensus size: 50
807950 AATAGAAAAT
*
807960 GCATGCATGGGAAAGCATAAAGATTGCAATTGGAGACAAAACATGCAGAG
1 GCATGCATGGGAAAGCATAAAAATTGCAATTGGAGACAAAACATGCAGAG
* * *
808010 GCATGCATGGGAAAACACAAAAATTGCAATTGGAGACAAAACATGCGGAG
1 GCATGCATGGGAAAGCATAAAAATTGCAATTGGAGACAAAACATGCAGAG
808060 GCATGCATGGGAAAGCATAAAAATTGCAATTGGAGACAAAACATGCAGAG
1 GCATGCATGGGAAAGCATAAAAATTGCAATTGGAGACAAAACATGCAGAG
808110 GCATGCATGGGAAA
1 GCATGCATGGGAAA
808124 TGAAAAAAGC
Statistics
Matches: 107, Mismatches: 7, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
50 107 1.00
ACGTcount: A:0.43, C:0.15, G:0.27, T:0.15
Consensus pattern (50 bp):
GCATGCATGGGAAAGCATAAAAATTGCAATTGGAGACAAAACATGCAGAG
Found at i:809766 original size:53 final size:50
Alignment explanation
Indices: 809658--809781 Score: 144
Period size: 53 Copynumber: 2.4 Consensus size: 50
809648 AATTGCTCGT
*
809658 AATCGGGGATACTCCAACCCCGGTTTTATTTTCAAAACACCAATTTCCTTT
1 AATCGGGGATACTCCAACCCCGGTTTTATTTTCAAAACACCAATTT-CTTC
* **
809709 AATCGAGGGGATACTCCAACCCCGGTTTTA-TTTCTAAAATATTAATTT-TTCAC
1 AATC--GGGGATACTCCAACCCCGGTTTTATTTTC-AAAACACCAATTTCTT--C
809762 AATCGGGGATACTCCAACCC
1 AATCGGGGATACTCCAACCC
809782 GTTATTTTCG
Statistics
Matches: 64, Mismatches: 4, Indels: 10
0.82 0.05 0.13
Matches are distributed among these distances:
51 22 0.34
52 4 0.06
53 38 0.59
ACGTcount: A:0.29, C:0.26, G:0.14, T:0.31
Consensus pattern (50 bp):
AATCGGGGATACTCCAACCCCGGTTTTATTTTCAAAACACCAATTTCTTC
Found at i:809922 original size:79 final size:79
Alignment explanation
Indices: 809712--810017 Score: 447
Period size: 78 Copynumber: 3.9 Consensus size: 79
809702 TTCCTTTAAT
* *
809712 CGAGGGGATACTCCAACCCCGGTTTTATTTCTAAAATATTAATTTTTCACAATCGGGGATACTCC
1 CGAGGGGATACTCCAACCCCGGTTTTATTTCTAAAACATCAATTTTTCACAATCGGGGATACTCC
*
809777 AA-CCCGTTATTTT
66 AACCCCGTTATTTC
* * * * *
809790 CGAAGGGATACTCCAA-CCCGGTTTTATCTCTAAAATATTAATTTTTCACAATCGGAGATACTCC
1 CGAGGGGATACTCCAACCCCGGTTTTATTTCTAAAACATCAATTTTTCACAATCGGGGATACTCC
809854 AACCCCGTTATTTC
66 AACCCCGTTATTTC
* *
809868 CGAGGGGATACTCCAACCCCGGTTTTATTTCTAAAACACCAATTTTTCATAATCGGGGATACTCC
1 CGAGGGGATACTCCAACCCCGGTTTTATTTCTAAAACATCAATTTTTCACAATCGGGGATACTCC
809933 AACCCCGTTATTTC
66 AACCCCGTTATTTC
* * * * **
809947 CGA-GGGATACTCCAACCTCGGTTTCATTTCTAAAACATCAATTTTTCATAATCCGGGATACTTT
1 CGAGGGGATACTCCAACCCCGGTTTTATTTCTAAAACATCAATTTTTCACAATCGGGGATACTCC
810011 AACCCCG
66 AACCCCG
810018 ATTTTATTTT
Statistics
Matches: 209, Mismatches: 17, Indels: 4
0.91 0.07 0.02
Matches are distributed among these distances:
77 48 0.23
78 102 0.49
79 59 0.28
ACGTcount: A:0.28, C:0.26, G:0.14, T:0.32
Consensus pattern (79 bp):
CGAGGGGATACTCCAACCCCGGTTTTATTTCTAAAACATCAATTTTTCACAATCGGGGATACTCC
AACCCCGTTATTTC
Found at i:823719 original size:62 final size:61
Alignment explanation
Indices: 823501--824070 Score: 666
Period size: 62 Copynumber: 9.4 Consensus size: 61
823491 TCCTTTCACC
823501 CTTTT-AGTCCTCAAAGAGCAGGACG-C----CTTTT-AAAGCCCACACAAGTTGGTGGCA
1 CTTTTCAGTCCTCAAAGAGCAGGACGCCTTTTCTTTTCAAAGCCCACACAAGTTGGTGGCA
* * *
823555 TTTTTCTAGTCCTCAAAGAGCAGGACGCCTTTACCTTTT-AAAGCCCACACAAGCTGGTGGCA
1 CTTTTC-AGTCCTCAAAGAGCAGGACGCCTTT-TCTTTTCAAAGCCCACACAAGTTGGTGGCA
* * * *
823617 CCTTT-AGTCTTCAAAGAGCAGGACG-CTTTCGCCTTTCAAAGCCCACACAAGTTGGTGGCA
1 CTTTTCAGTCCTCAAAGAGCAGGACGCCTTT-TCTTTTCAAAGCCCACACAAGTTGGTGGCA
* * *
823677 CTTTTCCGGTCCTCAAAGAGCAAGACGCCTTTTCTTTTCAAAGCCCACACAAGCTGGTGGCA
1 CTTTT-CAGTCCTCAAAGAGCAGGACGCCTTTTCTTTTCAAAGCCCACACAAGTTGGTGGCA
* * * ** * *
823739 CCTTTTCAGTCCTCAAAAAGCAAGACACCTTCGCCTTTT-AAAGCCCACACAAGCTGCTGGCA
1 -CTTTTCAGTCCTCAAAGAGCAGGACGCCTT-TTCTTTTCAAAGCCCACACAAGTTGGTGGCA
* * *
823801 CCTTT-AGTCCTCAAAGAGCAAGACGCCTTTTCCTTTT-AAAGCCCACACAAGCTGGTGGCA
1 CTTTTCAGTCCTCAAAGAGCAGGACGCCTTTT-CTTTTCAAAGCCCACACAAGTTGGTGGCA
* * * *
823861 CCTTT-AGTCTTCAAAGAGCAGGACG-CTTTCGCCTTTCAAAGCCCACACAAGTTGGTGGCA
1 CTTTTCAGTCCTCAAAGAGCAGGACGCCTTT-TCTTTTCAAAGCCCACACAAGTTGGTGGCA
*
823921 CTTTTTCAGTCCTCAAAGAGCAGGACGCCTTTTCTTTTCAAAGCCCACGCAAGTTGGTGGCA
1 C-TTTTCAGTCCTCAAAGAGCAGGACGCCTTTTCTTTTCAAAGCCCACACAAGTTGGTGGCA
*
823983 CTTTTCCAGTCCTCAAAGAGCAGGACGCCTTTTCTTTTCAAAAAGCCCACACGAGTTGGTGGCA
1 CTTTT-CAGTCCTCAAAGAGCAGGACGCCTTTTCTTTTC--AAAGCCCACACAAGTTGGTGGCA
* * *
824047 CCTTCCAGCCCTCAAAGAGCAGGA
1 CTTTTCAGTCCTCAAAGAGCAGGA
824071 TACACTTTAT
Statistics
Matches: 450, Mismatches: 43, Indels: 37
0.85 0.08 0.07
Matches are distributed among these distances:
54 4 0.01
56 20 0.04
57 1 0.00
59 16 0.04
60 140 0.31
61 11 0.02
62 198 0.44
63 36 0.08
64 24 0.05
ACGTcount: A:0.26, C:0.29, G:0.20, T:0.25
Consensus pattern (61 bp):
CTTTTCAGTCCTCAAAGAGCAGGACGCCTTTTCTTTTCAAAGCCCACACAAGTTGGTGGCA
Found at i:823720 original size:122 final size:122
Alignment explanation
Indices: 823524--824067 Score: 731
Period size: 122 Copynumber: 4.4 Consensus size: 122
823514 AAGAGCAGGA
* * * * *
823524 CGCCTTTTAAAGCCCACACAAGTTGGTGGCATTTTTCTAGTCCTCAAAGAGCAGGACGCCTTTAC
1 CGCCTTTCAAAGCCCACACAAGTTGGTGGCACTTTTCCAGTCCTCAAAGAGCAAGACGCCTTT-T
*
823589 CTTTTAAAGCCCACACAAGCTGGTGGCACCTTT-AGTCTTCAAAGAGCAGGACGCTTT
65 CTTTTAAAGCCCACACAAGCTGGTGGCACCTTTCAGTCCTCAAAGAGCAGGACGCTTT
*
823646 CGCCTTTCAAAGCCCACACAAGTTGGTGGCACTTTTCCGGTCCTCAAAGAGCAAGACGCCTTTTC
1 CGCCTTTCAAAGCCCACACAAGTTGGTGGCACTTTTCCAGTCCTCAAAGAGCAAGACGCCTTTTC
* * * *
823711 TTTTCAAAGCCCACACAAGCTGGTGGCACCTTTTCAGTCCTCAAAAAGCAAGACACCTT
66 TTTT-AAAGCCCACACAAGCTGGTGGCACC-TTTCAGTCCTCAAAGAGCAGGACGCTTT
* * * *
823770 CGCCTTTTAAAGCCCACACAAGCTGCTGGCACCTTT--AGTCCTCAAAGAGCAAGACGCCTTTTC
1 CGCCTTTCAAAGCCCACACAAGTTGGTGGCACTTTTCCAGTCCTCAAAGAGCAAGACGCCTTTT-
*
823833 CTTTTAAAGCCCACACAAGCTGGTGGCACCTTT-AGTCTTCAAAGAGCAGGACGCTTT
65 CTTTTAAAGCCCACACAAGCTGGTGGCACCTTTCAGTCCTCAAAGAGCAGGACGCTTT
* *
823890 CGCCTTTCAAAGCCCACACAAGTTGGTGGCACTTTTTCAGTCCTCAAAGAGCAGGACGCCTTTTC
1 CGCCTTTCAAAGCCCACACAAGTTGGTGGCACTTTTCCAGTCCTCAAAGAGCAAGACGCCTTTTC
* * *
823955 TTTTCAAAGCCCACGCAAGTTGGTGGCACTTTTCCAGTCCTCAAAGAGCAGGACGCCTTT
66 TTTT-AAAGCCCACACAAGCTGGTGGCACCTTT-CAGTCCTCAAAGAGCAGGACG-CTTT
* * * * *
824015 -TCTTTTCAAAAAGCCCACACGAGTTGGTGGCAC-CTTCCAGCCCTCAAAGAGCA
1 CGCCTTTC--AAAGCCCACACAAGTTGGTGGCACTTTTCCAGTCCTCAAAGAGCA
824068 GGATACACTT
Statistics
Matches: 374, Mismatches: 36, Indels: 21
0.87 0.08 0.05
Matches are distributed among these distances:
120 51 0.14
121 13 0.03
122 183 0.49
123 8 0.02
124 75 0.20
125 21 0.06
126 23 0.06
ACGTcount: A:0.26, C:0.30, G:0.19, T:0.25
Consensus pattern (122 bp):
CGCCTTTCAAAGCCCACACAAGTTGGTGGCACTTTTCCAGTCCTCAAAGAGCAAGACGCCTTTTC
TTTTAAAGCCCACACAAGCTGGTGGCACCTTTCAGTCCTCAAAGAGCAGGACGCTTT
Found at i:823995 original size:244 final size:245
Alignment explanation
Indices: 823524--824067 Score: 851
Period size: 244 Copynumber: 2.2 Consensus size: 245
823514 AAGAGCAGGA
** *
823524 CGCCTTTTAAAGCCCACACAAGTTGGTGGCATTTTTCTAGTCCTCAAAGAGCAGGACGCCTTTAC
1 CGCCTTTTAAAGCCCACACAAGTTGGTGGCA-CCTTCTAGTCCTCAAAGAGCAAGACGCCTTTAC
823589 CTTTTAAAGCCCACACAAGCTGGTGGCACCTTTAGTCTTCAAAGAGCAGGACGCTTTCGCCTTTC
65 CTTTTAAAGCCCACACAAGCTGGTGGCACCTTTAGTCTTCAAAGAGCAGGACGCTTTCGCCTTTC
*
823654 AAAGCCCACACAAGTTGGTGGCACTTTTCCGGTCCTCAAAGAGCAAGACGCCTTTTCTTTTCAAA
130 AAAGCCCACACAAGTTGGTGGCACTTTTCCAGTCCTCAAAGAGCAAGACGCCTTTTCTTTTCAAA
823719 GCCCACACAAGCTGGTGGCACCTTTTCAGTCCTCAAAAAGCAAGACACCTT
195 GCCCACACAAGCTGGTGGCACCTTTTCAGTCCTCAAAAAGCAAGACACCTT
* * *
823770 CGCCTTTTAAAGCCCACACAAGCTGCTGGCACCTT-TAGTCCTCAAAGAGCAAGACGCCTTTTCC
1 CGCCTTTTAAAGCCCACACAAGTTGGTGGCACCTTCTAGTCCTCAAAGAGCAAGACGCCTTTACC
823834 TTTTAAAGCCCACACAAGCTGGTGGCACCTTTAGTCTTCAAAGAGCAGGACGCTTTCGCCTTTCA
66 TTTTAAAGCCCACACAAGCTGGTGGCACCTTTAGTCTTCAAAGAGCAGGACGCTTTCGCCTTTCA
* *
823899 AAGCCCACACAAGTTGGTGGCACTTTTTCAGTCCTCAAAGAGCAGGACGCCTTTTCTTTTCAAAG
131 AAGCCCACACAAGTTGGTGGCACTTTTCCAGTCCTCAAAGAGCAAGACGCCTTTTCTTTTCAAAG
* * * * *
823964 CCCACGCAAGTTGGTGGCA-CTTTTCCAGTCCTCAAAGAGCAGGACGCCTT
196 CCCACACAAGCTGGTGGCACCTTTT-CAGTCCTCAAAAAGCAAGACACCTT
** * * *
824014 -TTCTTTTCAAAAAGCCCACACGAGTTGGTGGCACCTTCCAGCCCTCAAAGAGCA
1 CGCCTTTT---AAAGCCCACACAAGTTGGTGGCACCTTCTAGTCCTCAAAGAGCA
824068 GGATACACTT
Statistics
Matches: 272, Mismatches: 21, Indels: 9
0.90 0.07 0.03
Matches are distributed among these distances:
243 10 0.04
244 193 0.71
245 2 0.01
246 53 0.19
247 14 0.05
ACGTcount: A:0.26, C:0.30, G:0.19, T:0.25
Consensus pattern (245 bp):
CGCCTTTTAAAGCCCACACAAGTTGGTGGCACCTTCTAGTCCTCAAAGAGCAAGACGCCTTTACC
TTTTAAAGCCCACACAAGCTGGTGGCACCTTTAGTCTTCAAAGAGCAGGACGCTTTCGCCTTTCA
AAGCCCACACAAGTTGGTGGCACTTTTCCAGTCCTCAAAGAGCAAGACGCCTTTTCTTTTCAAAG
CCCACACAAGCTGGTGGCACCTTTTCAGTCCTCAAAAAGCAAGACACCTT
Found at i:825024 original size:50 final size:50
Alignment explanation
Indices: 824913--825075 Score: 283
Period size: 50 Copynumber: 3.3 Consensus size: 50
824903 AATAGAAAAT
*
824913 GCATGCATGGGAAAGCATAAAGATTGCAATTGGAGAC-AAACATGCAGAG
1 GCATGCATGGGAAAGCATAAAAATTGCAATTGGAGACAAAACATGCAGAG
* * *
824962 GCATGCATGGGAAAACACAAAAATTGCAATTGGAGACAAAACATGCGGAG
1 GCATGCATGGGAAAGCATAAAAATTGCAATTGGAGACAAAACATGCAGAG
825012 GCATGCATGGGAAAGCATAAAAATTGCAATTGGAGACAAAACATGCAGAG
1 GCATGCATGGGAAAGCATAAAAATTGCAATTGGAGACAAAACATGCAGAG
825062 GCATGCATGGGAAA
1 GCATGCATGGGAAA
825076 TGAAAAAAGC
Statistics
Matches: 106, Mismatches: 7, Indels: 1
0.93 0.06 0.01
Matches are distributed among these distances:
49 34 0.32
50 72 0.68
ACGTcount: A:0.42, C:0.15, G:0.28, T:0.15
Consensus pattern (50 bp):
GCATGCATGGGAAAGCATAAAAATTGCAATTGGAGACAAAACATGCAGAG
Found at i:826827 original size:77 final size:77
Alignment explanation
Indices: 826706--827018 Score: 228
Period size: 82 Copynumber: 3.9 Consensus size: 77
826696 CTTAATCGAT
* * *
826706 GGGGATACTCAACCCCGCGGTGGTTTTATTTTATAAAATAATTAATTTTTCACAAT-GGGATACT
1 GGGGATACTCAA-ACC-CGGT--TTTTATTCTA-AAAAT-ATCAATTTTTCACAATCGGGATACT
*
826770 TCAACCCGGTATTT-CGAA
60 TCAACCCGTTATTTCCG-A
* * *
826788 GGGGATACTCAAACCCGGTTTTTATCTCTAAAAATATTAATTTTTCAC-ATCGGGGAGACTCCAA
1 GGGGATACTCAAACCCGGTTTTTAT-TCTAAAAATATCAATTTTTCACAATC-GGGATACTTCAA
*
826852 CCAAGTTACTTTCCCCGA
64 CC-CGTTA-TTT--CCGA
* * * *
826870 GGGGATACTACAAACCCCGG-TTTTATTCT-AAAACACCAATTTTTCATAATCGGGGATA--TCT
1 GGGGATACT-CAAA-CCCGGTTTTTATTCTAAAAATATCAATTTTTCACAATC-GGGATACTTCA
826931 ACCCGTTAATTTCCGA
63 ACCCGTT-ATTTCCGA
* *
826947 GGGGATCCTCACAACCCGGTTTTTATTTCTAAAACATA-CAATTTTTCATAATCCGGGGGATACT
1 GGGGATACTCA-AACCCGGTTTTTA-TTCTAAAA-ATATCAATTTTTCACAAT-C--GGGATACT
*
827011 TTAACCCG
60 TCAACCCG
827019 AATTTCTTTT
Statistics
Matches: 192, Mismatches: 18, Indels: 41
0.76 0.07 0.16
Matches are distributed among these distances:
76 9 0.05
77 32 0.17
78 27 0.14
79 29 0.15
80 15 0.08
81 23 0.12
82 34 0.18
83 18 0.09
84 5 0.03
ACGTcount: A:0.29, C:0.22, G:0.17, T:0.32
Consensus pattern (77 bp):
GGGGATACTCAAACCCGGTTTTTATTCTAAAAATATCAATTTTTCACAATCGGGATACTTCAACC
CGTTATTTCCGA
Done.