Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Scaffold1010
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 15368
ACGTcount: A:0.31, C:0.18, G:0.19, T:0.31
Found at i:7602 original size:25 final size:23
Alignment explanation
Indices: 7574--7627 Score: 72
Period size: 23 Copynumber: 2.3 Consensus size: 23
7564 TAATTATTAC
7574 TATTTTATTCTTATATTTTTATTGT
1 TATTTTATT-TTATATTTTT-TTGT
*
7599 TATTTTATTTTTTATTTTTTTGT
1 TATTTTATTTTATATTTTTTTGT
*
7622 TTTTTT
1 TATTTT
7628 TATTATTCAT
Statistics
Matches: 27, Mismatches: 2, Indels: 2
0.87 0.06 0.06
Matches are distributed among these distances:
23 9 0.33
24 9 0.33
25 9 0.33
ACGTcount: A:0.15, C:0.02, G:0.04, T:0.80
Consensus pattern (23 bp):
TATTTTATTTTATATTTTTTTGT
Found at i:8322 original size:42 final size:42
Alignment explanation
Indices: 8213--9550 Score: 608
Period size: 42 Copynumber: 31.8 Consensus size: 42
8203 TGGAAAAGTT
* * * **
8213 TCCAAGGTCAAAGCCAACAGGCAGACTTGAGGGTAAGAAAGTC
1 TCCAAGGTCAAAGTCGACAGGCAGACTTGA-GGTGAGGCAGTC
* * *
8256 TCCAGGGTCAAAGCCGACAGGCAGACTTGAGGTGAGAG-AGTA
1 TCCAAGGTCAAAGTCGACAGGCAGACTTGAGGTGAG-GCAGTC
** * *
8298 TCCAAGGTCAAAGTCGGTAAGCAGAC-TGAAGGT-AGGAAAGTC
1 TCCAAGGTCAAAGTCGACAGGCAGACTTG-AGGTGAGG-CAGTC
* * * * * *
8340 TCCAGGGTCAACGTCGGCAGGCAGACTTGAGATGAGGTAGTA
1 TCCAAGGTCAAAGTCGACAGGCAGACTTGAGGTGAGGCAGTC
** * * *
8382 TGTAAGGTCAAAG-CTG-CTAGGTAGACTTGAGATGAGGTAGTC
1 TCCAAGGTCAAAGTC-GAC-AGGCAGACTTGAGGTGAGGCAGTC
* **
8424 TCCAAGGTCAAAGTCGACAGGCAGAC-TGAAGGGTAAGAAAGTC
1 TCCAAGGTCAAAGTCGACAGGCAGACTTG-A-GGTGAGGCAGTC
* * *
8467 CCCAAGGTCAAAGTCGACAGGCAGACTTAAGATGAGGCAGTC
1 TCCAAGGTCAAAGTCGACAGGCAGACTTGAGGTGAGGCAGTC
* * *
8509 TCCAAGGTCAAAGCCGACAAGCAGACTTGAGGTGAGGCAGCC
1 TCCAAGGTCAAAGTCGACAGGCAGACTTGAGGTGAGGCAGTC
* * * *
8551 TCCAAGATCAAAGTCGACAGGCAAAC-TGAAAGT-AGGAAAGTC
1 TCCAAGGTCAAAGTCGACAGGCAGACTTG-AGGTGAGG-CAGTC
* * *
8593 TCCAAGGTCAAAGCCGACAGGCAGACTTGAGATGAGGCAGCC
1 TCCAAGGTCAAAGTCGACAGGCAGACTTGAGGTGAGGCAGTC
* * * * *
8635 TCTAGGGTCAAA-ACTGACAGGCAGACTTGAGATGAGGTAGTC
1 TCCAAGGTCAAAGTC-GACAGGCAGACTTGAGGTGAGGCAGTC
* ** * *
8677 TCTAAGGTCAAAACCGACAGGCAGACTTGAGATGAGGTAGTC
1 TCCAAGGTCAAAGTCGACAGGCAGACTTGAGGTGAGGCAGTC
* * * *
8719 TCAAAGGTCAAAGCCGACAGGCAGACTTGAGATGAGGTAGTC
1 TCCAAGGTCAAAGTCGACAGGCAGACTTGAGGTGAGGCAGTC
* * * ** ** **
8761 TCTAGGGTCAAAGCCGACAGATAGACTAAAGG-GTAGAAAAGTC
1 TCCAAGGTCAAAGTCGACAGGCAGACTTGAGGTG-AG-GCAGTC
** * * * * * * * *
8804 TTTAGGGTCAAAGCCGATAAGTAGACTTGAGATAAGGTAGTC
1 TCCAAGGTCAAAGTCGACAGGCAGACTTGAGGTGAGGCAGTC
** * * **
8846 TTTAAGGTCAAAGTTGACAAGCAGAC-TGAAGGT-AGAAAAGTC
1 TCCAAGGTCAAAGTCGACAGGCAGACTTG-AGGTGAG-GCAGTC
* ** * * *
8888 TCCAAGGTCAAAGCCGACAAACCGACTTAAGATGAGGCAGTC
1 TCCAAGGTCAAAGTCGACAGGCAGACTTGAGGTGAGGCAGTC
* ** * * *** *
8930 TCCAAGGTCAAAG-CTGACAAGCAGACTAAAAGTAAAAAAATC
1 TCCAAGGTCAAAGTC-GACAGGCAGACTTGAGGTGAGGCAGTC
* * * * * *
8972 TCCAAGGTCAAAGCCGATAAGTAGACTTGAGATG-GAGTAGTC
1 TCCAAGGTCAAAGTCGACAGGCAGACTTGAGGTGAG-GCAGTC
* * * **
9014 TCCAAGGTTAAAATCGACAAGG-AGAC-TGAAGGTAAGAAAGTC
1 TCCAAGGTCAAAGTCGAC-AGGCAGACTTG-AGGTGAGGCAGTC
* * * * * *
9056 TCCAAGGATAAAAGCCGACAAGTAGACTTGAGATGAGGCAATC
1 TCCAAGG-TCAAAGTCGACAGGCAGACTTGAGGTGAGGCAGTC
* * ** **
9099 TCCAAAGTCAAAGCCGACAATCAGAC-TGAAGGT-AGAAAAGTC
1 TCCAAGGTCAAAGTCGACAGGCAGACTTG-AGGTGAG-GCAGTC
* * * * ** *
9141 TCCAGGGTCAAAGCCGACAGACAGACTTGAGATGAGATAGTT
1 TCCAAGGTCAAAGTCGACAGGCAGACTTGAGGTGAGGCAGTC
* * * * *** * **
9183 TCTAGGGTCAAAG-CTGATAGGTAGACCAAAGGTAAGAAAAGTC
1 TCCAAGGTCAAAGTC-GACAGGCAGACTTGAGGTGAG-GCAGTC
* * * * * *
9226 TCCAGGGTCAAAGTTGATAGGCAGACTGGAGATAAGGCAGTC
1 TCCAAGGTCAAAGTCGACAGGCAGACTTGAGGTGAGGCAGTC
* **
9268 TCCAAGGTCAAAGTCGACAGACAGAC-TGAAGGT-AGAAAAGTC
1 TCCAAGGTCAAAGTCGACAGGCAGACTTG-AGGTGAG-GCAGTC
** * * * * * * *
9310 TTTAAGGTCAAAGCCAACAAGTATACTAGAGATGAGGCAGTC
1 TCCAAGGTCAAAGTCGACAGGCAGACTTGAGGTGAGGCAGTC
* * * ** *
9352 TCTAGGGTCAAAGTCGACAAGCAGAC-TGAAGGT-AGAAAAATC
1 TCCAAGGTCAAAGTCGACAGGCAGACTTG-AGGTGAG-GCAGTC
* * * * **
9394 TCCAAGGTCAAAGCCGACAGGTAAACTTGAGATGAGGCAACC
1 TCCAAGGTCAAAGTCGACAGGCAGACTTGAGGTGAGGCAGTC
* * * * **
9436 TCCAAGGTCAAAG-CTAATAGGTAGAC-TGAAGGTAAGAAAGTC
1 TCCAAGGTCAAAGTC-GACAGGCAGACTTG-AGGTGAGGCAGTC
* * * *
9478 T-CTAGAGTCAAAG-CTGATAGACAGACTTGAGGTGAGGCAATC
1 TCCAAG-GTCAAAGTC-GACAGGCAGACTTGAGGTGAGGCAGTC
* * *
9520 TCTAAGGTCAAAGCCGACAGACAGAC-TGAGG
1 TCCAAGGTCAAAGTCGACAGGCAGACTTGAGG
9551 GTAAAAAAAT
Statistics
Matches: 1001, Mismatches: 238, Indels: 114
0.74 0.18 0.08
Matches are distributed among these distances:
40 1 0.00
41 44 0.04
42 766 0.77
43 187 0.19
44 3 0.00
ACGTcount: A:0.36, C:0.18, G:0.28, T:0.17
Consensus pattern (42 bp):
TCCAAGGTCAAAGTCGACAGGCAGACTTGAGGTGAGGCAGTC
Found at i:8435 original size:126 final size:126
Alignment explanation
Indices: 8199--9546 Score: 743
Period size: 126 Copynumber: 10.7 Consensus size: 126
8189 GGGCAGATAA
* * * * ** * *
8199 AAGGT-GGAAAAGTTTCCAAGGTCAAAGCCAACAGGCAGACTTGAGGGTAAGAAAGTCTCCAGGG
1 AAGGTAGG-AAAGTCTCCAAGGTCAAAGCCGACAGGCAGACTTGA-GATGAGGCAGTCTCTAAGG
* * ** *
8263 TCAAAGCCGACAGGCAGACTTGAGGTGAGAG-AGTATCCAAGGTCAAAGTCGGTAAGCAGACTG
64 TCAAAGCCGACAGGCAGACTTGAGATGAG-GTAGTCTCCAAGGTCAAAGTCGACAGGCAGACTG
* * * * * * *
8326 AAGGTAGGAAAGTCTCCAGGGTCAACGTCGGCAGGCAGACTTGAGATGAGGTAGTATGTAAGGTC
1 AAGGTAGGAAAGTCTCCAAGGTCAAAGCCGACAGGCAGACTTGAGATGAGGCAGTCTCTAAGGTC
* *
8391 AAAGCTG-CTAGGTAGACTTGAGATGAGGTAGTCTCCAAGGTCAAAGTCGACAGGCAGACTG
66 AAAGCCGAC-AGGCAGACTTGAGATGAGGTAGTCTCCAAGGTCAAAGTCGACAGGCAGACTG
* * * * *
8452 AAGGGTAAGAAAGTCCCCAAGGTCAAAGTCGACAGGCAGACTTAAGATGAGGCAGTCTCCAAGGT
1 AA-GGTAGGAAAGTCTCCAAGGTCAAAGCCGACAGGCAGACTTGAGATGAGGCAGTCTCTAAGGT
* * * * * *
8517 CAAAGCCGACAAGCAGACTTGAGGTGAGGCAGCCTCCAAGATCAAAGTCGACAGGCAAACTG
65 CAAAGCCGACAGGCAGACTTGAGATGAGGTAGTCTCCAAGGTCAAAGTCGACAGGCAGACTG
* * *
8579 AAAGTAGGAAAGTCTCCAAGGTCAAAGCCGACAGGCAGACTTGAGATGAGGCAGCCTCTAGGGTC
1 AAGGTAGGAAAGTCTCCAAGGTCAAAGCCGACAGGCAGACTTGAGATGAGGCAGTCTCTAAGGTC
* * * **
8644 AAAACTGACAGGCAGACTTGAGATGAGGTAGTCTCTAAGGTCAAAACCGACAGGCAGACTTG
66 AAAGCCGACAGGCAGACTTGAGATGAGGTAGTCTCCAAGGTCAAAGTCGACAGGCAGAC-TG
* * * * *
8706 -AGATGAGG-TAGTCTCAAAGGTCAAAGCCGACAGGCAGACTTGAGATGAGGTAGTCTCTAGGGT
1 AAGGT-AGGAAAGTCTCCAAGGTCAAAGCCGACAGGCAGACTTGAGATGAGGCAGTCTCTAAGGT
** ** * ** ** * * * * *
8769 CAAAGCCGACAGATAGACTAAAG-GGTAGAAAAGTCTTTAGGGTCAAAGCCGATAAGTAGACTTG
65 CAAAGCCGACAGGCAGACTTGAGATG-AG-GTAGTCTCCAAGGTCAAAGTCGACAGGCAGAC-TG
* * ** ** * * ** *
8833 -AGATAAGG-TAGTCTTTAAGGTCAAAGTTGACAAGCAGAC-TGA-AGGTAGAAAAGTCTCCAAG
1 AAGGT-AGGAAAGTCTCCAAGGTCAAAGCCGACAGGCAGACTTGAGATG-AG-GCAGTCTCTAAG
** * * * * *
8894 GTCAAAGCCGACAAACCGACTTAAGATGAGGCAGTCTCCAAGGTCAAAG-CTGACAAGCAGACTA
63 GTCAAAGCCGACAGGCAGACTTGAGATGAGGTAGTCTCCAAGGTCAAAGTC-GACAGGCAGACTG
* ** * * * * * *
8958 AAAGTAAAAAAATCTCCAAGGTCAAAGCCGATAAGTAGACTTGAGATG-GAGTAGTCTCCAAGGT
1 AAGGTAGGAAAGTCTCCAAGGTCAAAGCCGACAGGCAGACTTGAGATGAG-GCAGTCTCTAAGGT
* ** * * ** * * * *
9022 TAAAATCGACAAGG-AGAC-TGAAGGTAAGAAAGTCTCCAAGGATAAAAGCCGACAAGTAGACTT
65 CAAAGCCGAC-AGGCAGACTTG-AGATGAGGTAGTCTCCAAGG-TCAAAGTCGACAGGCAGAC-T
9085 G
126 G
* * * ** * ** * *
9086 -AGATGAGGCAA-TCTCCAAAGTCAAAGCCGACAATCAGAC-TGA-AGGTAGAAAAGTCTCCAGG
1 AAGGT-AGGAAAGTCTCCAAGGTCAAAGCCGACAGGCAGACTTGAGATG-AG-GCAGTCTCTAAG
* * * * * * * **
9147 GTCAAAGCCGACAGACAGACTTGAGATGAGATAGTTTCTAGGGTCAAAG-CTGATAGGTAGACCA
63 GTCAAAGCCGACAGGCAGACTTGAGATGAGGTAGTCTCCAAGGTCAAAGTC-GACAGGCAGACTG
* * ** * * * *
9211 AAGGTAAGAAAAGTCTCCAGGGTCAAAGTTGATAGGCAGACTGGAGATAAGGCAGTCTCCAAGGT
1 AAGGT-AGGAAAGTCTCCAAGGTCAAAGCCGACAGGCAGACTTGAGATGAGGCAGTCTCTAAGGT
* * * ** ** * * * * *
9276 CAAAGTCGACAGACAGAC-TGA-AGGTAGAAAAGTCTTTAAGGTCAAAGCCAACAAGTATACT-
65 CAAAGCCGACAGGCAGACTTGAGATG-AG-GTAGTCTCCAAGGTCAAAGTCGACAGGCAGACTG
* * * * * * * ** * *
9337 AGAGATGAGG-CAGTCTCTAGGGTCAAAGTCGACAAGCAGAC-TGA-AGGTAGAAAAATCTCCAA
1 A-AGGT-AGGAAAGTCTCCAAGGTCAAAGCCGACAGGCAGACTTGAGATG-AG-GCAGTCTCTAA
* * * ** * * *
9399 GGTCAAAGCCGACAGGTAAACTTGAGATGAGGCAACCTCCAAGGTCAAAG-CTAATAGGTAGACT
62 GGTCAAAGCCGACAGGCAGACTTGAGATGAGGTAGTCTCCAAGGTCAAAGTC-GACAGGCAGACT
9463 G
126 G
* * * * * * *
9464 AAGGTAAGAAAGTCT-CTAGAGTCAAAGCTGATAGACAGACTTGAGGTGAGGCAATCTCTAAGGT
1 AAGGTAGGAAAGTCTCCAAG-GTCAAAGCCGACAGGCAGACTTGAGATGAGGCAGTCTCTAAGGT
*
9528 CAAAGCCGACAGACAGACT
65 CAAAGCCGACAGGCAGACT
9547 GAGGGTAAAA
Statistics
Matches: 940, Mismatches: 235, Indels: 93
0.74 0.19 0.07
Matches are distributed among these distances:
124 1 0.00
125 22 0.02
126 488 0.52
127 407 0.43
128 21 0.02
129 1 0.00
ACGTcount: A:0.36, C:0.18, G:0.28, T:0.17
Consensus pattern (126 bp):
AAGGTAGGAAAGTCTCCAAGGTCAAAGCCGACAGGCAGACTTGAGATGAGGCAGTCTCTAAGGTC
AAAGCCGACAGGCAGACTTGAGATGAGGTAGTCTCCAAGGTCAAAGTCGACAGGCAGACTG
Found at i:8602 original size:211 final size:210
Alignment explanation
Indices: 8213--9414 Score: 791
Period size: 211 Copynumber: 5.7 Consensus size: 210
8203 TGGAAAAGTT
* * *
8213 TCCAAGGTCAAAGCCAACAGGCAGACTTGAGGGTAAGAAAGTCTCCAGGGTCAAAGCCGACAGGC
1 TCCAAGGTCAAAGTCGACAGGCAGACTTGA-GGTAAGAAAGTCTCCAAGGTCAAAGCCGACAGGC
* * * * **
8278 AGACTTGAGGTGAGAG-AGTATCCAAGGTCAAAGTCGGTAAGCAGAC-TGAAGGT-AGGAAAGTC
65 AGACTTAAGATGAG-GCAGTCTCCAAGGTCAAAGCCGACAAGCAGACTTG-AGGTGAGG-AAGTC
* * * * * * *
8340 TCCAGGGTCAACGTCGGCAGGCAGACTTGAGA-TGAGG-TAGTATGTAAGGTCAAAGCTGCTAGG
127 TCCAGGGTCAAAGTCGACAGGCAGAC-TGAAAGT-AGGAAAGTCTCTAAGGTCAAAGCCGCTAGG
8403 TAGACTTGAGATGAGGTAGTC
190 TAGACTTGAGATGAGGTAGTC
* *
8424 TCCAAGGTCAAAGTCGACAGGCAGAC-TGAAGGGTAAGAAAGTCCCCAAGGTCAAAGTCGACAGG
1 TCCAAGGTCAAAGTCGACAGGCAGACTTG-A-GGTAAGAAAGTCTCCAAGGTCAAAGCCGACAGG
* *
8488 CAGACTTAAGATGAGGCAGTCTCCAAGGTCAAAGCCGACAAGCAGACTTGAGGTGAGGCAGCCTC
64 CAGACTTAAGATGAGGCAGTCTCCAAGGTCAAAGCCGACAAGCAGACTTGAGGTGAGGAAGTCTC
* * * * *
8553 CAAGATCAAAGTCGACAGGCAAACTGAAAGTAGGAAAGTCTCCAAGGTCAAAGCCGAC-AGGCAG
129 CAGGGTCAAAGTCGACAGGCAGACTGAAAGTAGGAAAGTCTCTAAGGTCAAAGCCG-CTAGGTAG
* *
8617 ACTTGAGATGAGGCAGCC
193 ACTTGAGATGAGGTAGTC
* * * * * ** * *
8635 TCTAGGGTCAAA-ACTGACAGGCAGACTTGAGATGAGGTAGTCTCTAAGGTCAAAACCGACAGGC
1 TCCAAGGTCAAAGTC-GACAGGCAGACTTGAGGTAAGAAAGTCTCCAAGGTCAAAGCCGACAGGC
* * * * * * *
8699 AGACTTGAGATGAGGTAGTCTCAAAGGTCAAAGCCGACAGGCAGACTTGAGATGAGGTAGTCTCT
65 AGACTTAAGATGAGGCAGTCTCCAAGGTCAAAGCCGACAAGCAGACTTGAGGTGAGGAAGTCTCC
* ** * * * * *
8764 AGGGTCAAAGCCGACAGATAGACT-AAAGGGTAGAAAAGTCTTTAGGGTCAAAGCCGATAAGTAG
130 AGGGTCAAAGTCGACAGGCAGACTGAAA--GTAGGAAAGTCTCTAAGGTCAAAGCCGCTAGGTAG
*
8828 ACTTGAGATAAGGTAGTC
193 ACTTGAGATGAGGTAGTC
** * * **
8846 TTTAAGGTCAAAGTTGACAAGCAGAC-TGAAGGT-AGAAAAGTCTCCAAGGTCAAAGCCGACAAA
1 TCCAAGGTCAAAGTCGACAGGCAGACTTG-AGGTAAG-AAAGTCTCCAAGGTCAAAGCCGACAGG
* * ** * * ** *
8909 CCGACTTAAGATGAGGCAGTCTCCAAGGTCAAAGCTGACAAGCAGACTAAAAGTAAAAAAATCTC
64 CAGACTTAAGATGAGGCAGTCTCCAAGGTCAAAGCCGACAAGCAGACTTGAGGTGAGGAAGTCTC
* * * * * * * * * ** *
8974 CAAGGTCAAAGCCGATAAGTAGACTTGAGA-T-GGAGTAGTCTCCAAGGTTAAAATCGACAAGG-
129 CAGGGTCAAAGTCGACAGGCAGAC-TGAAAGTAGGA-AAGTCTCTAAGGTCAAAGCCG-CTAGGT
* * **
9036 AGAC-TGAAGGTAAGAAAGTC
191 AGACTTG-AGATGAGGTAGTC
* * * * * * * * **
9056 TCCAAGGATAAAAGCCGACAAGTAGACTTGAGATGAGGCAA-TCTCCAAAGTCAAAGCCGACAAT
1 TCCAAGG-TCAAAGTCGACAGGCAGACTTGAGGT-AAGAAAGTCTCCAAGGTCAAAGCCGACAGG
* * ** * *
9120 CAGACTGAAGGT-AGAAAAGTCTCCAGGGTCAAAGCCGAC-AGACAGACTTGAGATGA-GATAGT
64 CAGACTTAAGATGAG-GCAGTCTCCAAGGTCAAAGCCGACAAG-CAGACTTGAGGTGAGGA-AGT
* * * * * * * * ** *
9182 TTCTAGGGTCAAAG-CTGATAGGTAGAC-CAAAGGTAAGAAAAGTCTCCAGGGTCAAAGTTGATA
126 CTCCAGGGTCAAAGTC-GACAGGCAGACTGAAA-GT-AGGAAAGTCTCTAAGGTCAAAGCCGCTA
* * * *
9245 GGCAGACTGGAGATAAGGCAGTC
188 GGTAGACTTGAGATGAGGTAGTC
* ** * *
9268 TCCAAGGTCAAAGTCGACAGACAGAC-TGAAGGT-AGAAAAGTCTTTAAGGTCAAAGCCAACAAG
1 TCCAAGGTCAAAGTCGACAGGCAGACTTG-AGGTAAG-AAAGTCTCCAAGGTCAAAGCCGACAGG
* * * * * * *
9331 TATAC-TAGAGATGAGGCAGTCTCTAGGGTCAAAGTCGACAAGCAGAC-TGAAGGT-AGAAAAAT
64 CAGACTTA-AGATGAGGCAGTCTCCAAGGTCAAAGCCGACAAGCAGACTTG-AGGTGAG-GAAGT
* *
9393 CTCCAAGGTCAAAGCCGACAGG
126 CTCCAGGGTCAAAGTCGACAGG
9415 TAAACTTGAG
Statistics
Matches: 767, Mismatches: 180, Indels: 88
0.74 0.17 0.09
Matches are distributed among these distances:
209 10 0.01
210 164 0.21
211 531 0.69
212 56 0.07
213 6 0.01
ACGTcount: A:0.36, C:0.19, G:0.28, T:0.17
Consensus pattern (210 bp):
TCCAAGGTCAAAGTCGACAGGCAGACTTGAGGTAAGAAAGTCTCCAAGGTCAAAGCCGACAGGCA
GACTTAAGATGAGGCAGTCTCCAAGGTCAAAGCCGACAAGCAGACTTGAGGTGAGGAAGTCTCCA
GGGTCAAAGTCGACAGGCAGACTGAAAGTAGGAAAGTCTCTAAGGTCAAAGCCGCTAGGTAGACT
TGAGATGAGGTAGTC
Found at i:8815 original size:295 final size:295
Alignment explanation
Indices: 8357--9125 Score: 730
Period size: 295 Copynumber: 2.6 Consensus size: 295
8347 TCAACGTCGG
* * * *
8357 CAGGCAGACTTGAGATGAGGTAGTATGTAAGGTCAAAGCTGCTAGGTAGACTTGAGATGAGGTAG
1 CAGGCAGACTTGAGATGAGGTAGTATCTAAGGTCAAAACCGCTAGGCAGACTTGAGATGAGGTAG
* * * *
8422 TCTCCAAGGTCAAAGTCGACAGGCAGACTGAAGGGTAAGAAAGTCCCCAAGGTCAAAGTCGACAG
66 TCTCAAAGGTCAAAGCCGACAGGCAGACTGAAGGATAAGAAAGTCCCCAAGGTCAAAGCCGACAG
* * ** * *
8487 GCAGACTTAAGATGAGGCAGTCTCCAAGGTCAAAGCCGACAAGCAGACTTGAGGTGAGGCAGCCT
131 ACAGACTAAAGATGAGAAAGTCTCCAAGGTCAAAGCCGACAAGCAGACTTGAGATAAGGCAGCCT
* * **
8552 CCAAGATCAAAGTCGACAGGCAAACTGAAAGTAGGAAAGTCTCCAAGGTCAAAGCCGACAGGCAG
196 CCAAGATCAAAGTCGACAAGCAAACTGAAAGTAGAAAAGTCTCCAAGGTCAAAGCCGACAAACAG
* * *
8617 ACTTGAGATGAGGCAGCCTCTAGGGTCAAAACTGA
261 ACTTAAGATGAGGCAGCCTCCAAGGTCAAAACTGA
*
8652 CAGGCAGACTTGAGATGAGGTAGTCTCTAAGGTCAAAACCGAC-AGGCAGACTTGAGATGAGGTA
1 CAGGCAGACTTGAGATGAGGTAGTATCTAAGGTCAAAACCG-CTAGGCAGACTTGAGATGAGGTA
* ** * * *
8716 GTCTCAAAGGTCAAAGCCGACAGGCAGACTTG-A-GATGAGGTAGTCTCTAGGGTCAAAGCCGAC
65 GTCTCAAAGGTCAAAGCCGACAGGCAGAC-TGAAGGATAAGAAAGTCCCCAAGGTCAAAGCCGAC
* * ** * * * *
8779 AGATAGACTAAAG-GGTAGAAAAGTCTTTAGGGTCAAAGCCGATAAGTAGACTTGAGATAAGGTA
129 AGACAGACTAAAGATG-AG-AAAGTCTCCAAGGTCAAAGCCGACAAGCAGACTTGAGATAAGGCA
* ** * * * *
8843 GTCTTTAAGGTCAAAGTTGACAAGCAGACTGAAGGTAGAAAAGTCTCCAAGGTCAAAGCCGACAA
192 GCCTCCAAGATCAAAGTCGACAAGCAAACTGAAAGTAGAAAAGTCTCCAAGGTCAAAGCCGACAA
* * *
8908 ACCGACTTAAGATGAGGCAGTCTCCAAGGTCAAAGCTGA
257 ACAGACTTAAGATGAGGCAGCCTCCAAGGTCAAAACTGA
* * * * *** * * * * * * *
8947 CAAGCAGAC-TAAAAGTAAAAAAATCTCCAAGGTCAAAGCCGATAAGTAGACTTGAGATG-GAGT
1 CAGGCAGACTTGAGA-TGAGGTAGTATCTAAGGTCAAAACCGCTAGGCAGACTTGAGATGAG-GT
* * ** * *
9010 AGTCTCCAAGGTTAAAATCGACAAGG-AGACTGAAGG-TAAGAAAGTCTCCAAGGATAAAAGCCG
64 AGTCTCAAAGGTCAAAGCCGAC-AGGCAGACTGAAGGATAAGAAAGTCCCCAAGG-TCAAAGCCG
* ** * * *
9073 ACA-AGTAGACTTGAGATGAGGCAA-TCTCCAAAGTCAAAGCCGACAATCAGACT
127 ACAGA-CAGACTAAAGATGA-GAAAGTCTCCAAGGTCAAAGCCGACAAGCAGACT
9126 GAAGGTAGAA
Statistics
Matches: 380, Mismatches: 80, Indels: 28
0.78 0.16 0.06
Matches are distributed among these distances:
293 1 0.00
294 40 0.11
295 308 0.81
296 29 0.08
297 2 0.01
ACGTcount: A:0.36, C:0.19, G:0.28, T:0.17
Consensus pattern (295 bp):
CAGGCAGACTTGAGATGAGGTAGTATCTAAGGTCAAAACCGCTAGGCAGACTTGAGATGAGGTAG
TCTCAAAGGTCAAAGCCGACAGGCAGACTGAAGGATAAGAAAGTCCCCAAGGTCAAAGCCGACAG
ACAGACTAAAGATGAGAAAGTCTCCAAGGTCAAAGCCGACAAGCAGACTTGAGATAAGGCAGCCT
CCAAGATCAAAGTCGACAAGCAAACTGAAAGTAGAAAAGTCTCCAAGGTCAAAGCCGACAAACAG
ACTTAAGATGAGGCAGCCTCCAAGGTCAAAACTGA
Found at i:8855 original size:253 final size:253
Alignment explanation
Indices: 8207--9553 Score: 996
Period size: 253 Copynumber: 5.3 Consensus size: 253
8197 AAAAGGTGGA
* * * * ** *
8207 AAAGTTTCCAAGGTCAAAGCCAACAGGCAGACTTGAGGGTAAGAAAGTCTCCAGGGTCAAAGCCG
1 AAAGTCTCCAAGGTCAAAGCCGACAGGCAGACTTGA-GATGAGGCAGTCTCCAAGGTCAAAGCCG
* * * * * * ** * *
8272 ACAGGCAGACTTG-AGGT-GAGAGAGTATCCAAGGTCAAAGTCGGTAAGCAGAC-TGA-AGGTAG
65 ACAAGCAGAC-TGAAGGTAGAGAAAGTCTCTAAGATCAAAGCCGACAAGTAGACTTGAGATG-AG
* * * * * * * ** * **
8333 GAAAGTCTCCAGGGTCAACGTCGGCAGGCAGACTTG-AGAT-GAGGTAGTATGTAAGGTCAAAGC
128 G-CAGTCTCCAAGGTCAAAGCCGACAAGCAGACTTGAAGGTAGA-AAAGTCTCCAAGGTCAAAGC
* ** * *
8396 TG-CTAGGTAGACTTGAGATGAGGTAGTCTCCAAGGTCAAAGTCGACAGGCAGACTGAAGGGTAA
191 CGAC-AGACAGACTTGAGATGAGGTAGTCTCCAAGGTCAAAGCCGACAGGCAGACT-AA-GATAA
8460 G
253 G
* * *
8461 AAAGTCCCCAAGGTCAAAGTCGACAGGCAGACTTAAGATGAGGCAGTCTCCAAGGTCAAAGCCGA
1 AAAGTCTCCAAGGTCAAAGCCGACAGGCAGACTTGAGATGAGGCAGTCTCCAAGGTCAAAGCCGA
** * * * * * * *
8526 CAAGCAGACTTG-AGGT-GAGGCAGCCTCCAAGATCAAAGTCGACAGGCAAAC-TGA-AAGTAGG
66 CAAGCAGAC-TGAAGGTAGAGAAAGTCTCTAAGATCAAAGCCGACAAGTAGACTTGAGATG-AGG
* * * ** * * * * *
8587 AAAGTCTCCAAGGTCAAAGCCGACAGGCAGACTTG-AGAT-GAGGCAGCCTCTAGGGTCAAAACT
129 -CAGTCTCCAAGGTCAAAGCCGACAAGCAGACTTGAAGGTAGA-AAAGTCTCCAAGGTCAAAGCC
* * * * *
8650 GACAGGCAGACTTGAGATGAGGTAGTCTCTAAGGTCAAAACCGACAGGCAGACTTGAGATGAG
192 GACAGACAGACTTGAGATGAGGTAGTCTCCAAGGTCAAAGCCGACAGGCAGAC-TAAGATAAG
** * * * *
8713 GTAGTCTCAAAGGTCAAAGCCGACAGGCAGACTTGAGATGAGGTAGTCTCTAGGGTCAAAGCCGA
1 AAAGTCTCCAAGGTCAAAGCCGACAGGCAGACTTGAGATGAGGCAGTCTCCAAGGTCAAAGCCGA
* * * * * * *
8778 C-AGATAGACTAAAGGGTAGA-AAAGTCTTTAGGGTCAAAGCCGATAAGTAGACTTGAGATAAGG
66 CAAG-CAGACTGAA-GGTAGAGAAAGTCTCTAAGATCAAAGCCGACAAGTAGACTTGAGATGAGG
* ** **
8841 TAGTCTTTAAGGTCAAAGTTGACAAGCAGAC-TGAAGGTAGAAAAGTCTCCAAGGTCAAAGCCGA
129 CAGTCTCCAAGGTCAAAGCCGACAAGCAGACTTGAAGGTAGAAAAGTCTCCAAGGTCAAAGCCGA
* * * * * * * *
8905 CAAACCGACTTAAGATGAGGCAGTCTCCAAGGTCAAAGCTGACAAGCAGACTAAAAGTAAA
194 CAGACAGACTTGAGATGAGGTAGTCTCCAAGGTCAAAGCCGACAGGCAGACTAAGA-TAAG
* * * * * * **
8966 AAAATCTCCAAGGTCAAAGCCGATAAGTAGACTTGAGATG-GAGTAGTCTCCAAGGTTAAAATCG
1 AAAGTCTCCAAGGTCAAAGCCGACAGGCAGACTTGAGATGAG-GCAGTCTCCAAGGTCAAAGCCG
* * *
9030 ACAAGGAGACTGAAGGTA-AGAAAGTCTCCAAGGATAAAAGCCGACAAGTAGACTTGAGATGAGG
65 ACAAGCAGACTGAAGGTAGAGAAAGTCTCTAA-GATCAAAGCCGACAAGTAGACTTGAGATGAGG
* * * *
9094 CAATCTCCAAAGTCAAAGCCGACAATCAGAC-TGAAGGTAGAAAAGTCTCCAGGGTCAAAGCCGA
129 CAGTCTCCAAGGTCAAAGCCGACAAGCAGACTTGAAGGTAGAAAAGTCTCCAAGGTCAAAGCCGA
* * * * * * * * *
9158 CAGACAGACTTGAGATGAGATAGTTTCTAGGGTCAAAGCTGATAGGTAGACCAAAGGTAAG
194 CAGACAGACTTGAGATGAGGTAGTCTCCAAGGTCAAAGCCGACAGGCAGA-CTAAGATAAG
* ** * * * *
9219 AAAAGTCTCCAGGGTCAAAGTTGATAGGCAGACTGGAGATAAGGCAGTCTCCAAGGTCAAAGTCG
1 -AAAGTCTCCAAGGTCAAAGCCGACAGGCAGACTTGAGATGAGGCAGTCTCCAAGGTCAAAGCCG
* * * * *
9284 AC-AGACAGACTGAAGGTAGA-AAAGTCTTTAAGGTCAAAGCCAACAAGTATACTAGAGATGAGG
65 ACAAG-CAGACTGAAGGTAGAGAAAGTCTCTAAGATCAAAGCCGACAAGTAGACTTGAGATGAGG
* * * *
9347 CAGTCTCTAGGGTCAAAGTCGACAAGCAGAC-TGAAGGTAGAAAAATCTCCAAGGTCAAAGCCGA
129 CAGTCTCCAAGGTCAAAGCCGACAAGCAGACTTGAAGGTAGAAAAGTCTCCAAGGTCAAAGCCGA
** * * ** ** * * *
9411 CAGGTAAACTTGAGATGAGGCAACCTCCAAGGTCAAAGCTAATAGGTAGACTGAAGGTAAG
194 CAGACAGACTTGAGATGAGGTAGTCTCCAAGGTCAAAGCCGACAGGCAGACT-AAGATAAG
* * * * * * *
9472 AAAGTCT-CTAGAGTCAAAGCTGATAGACAGACTTGAGGTGAGGCAATCTCTAAGGTCAAAGCCG
1 AAAGTCTCCAAG-GTCAAAGCCGACAGGCAGACTTGAGATGAGGCAGTCTCCAAGGTCAAAGCCG
*
9536 AC-AGACAGACTGAGGGTA
65 ACAAG-CAGACTGAAGGTA
9554 AAAAAATTCA
Statistics
Matches: 886, Mismatches: 185, Indels: 46
0.79 0.17 0.04
Matches are distributed among these distances:
251 6 0.01
252 153 0.17
253 602 0.68
254 122 0.14
255 3 0.00
ACGTcount: A:0.36, C:0.18, G:0.28, T:0.17
Consensus pattern (253 bp):
AAAGTCTCCAAGGTCAAAGCCGACAGGCAGACTTGAGATGAGGCAGTCTCCAAGGTCAAAGCCGA
CAAGCAGACTGAAGGTAGAGAAAGTCTCTAAGATCAAAGCCGACAAGTAGACTTGAGATGAGGCA
GTCTCCAAGGTCAAAGCCGACAAGCAGACTTGAAGGTAGAAAAGTCTCCAAGGTCAAAGCCGACA
GACAGACTTGAGATGAGGTAGTCTCCAAGGTCAAAGCCGACAGGCAGACTAAGATAAG
Found at i:9547 original size:84 final size:84
Alignment explanation
Indices: 8207--9554 Score: 837
Period size: 84 Copynumber: 16.0 Consensus size: 84
8197 AAAAGGTGGA
* * * * * ** *
8207 AAAGTTTCCAAGGTCAAAGCCAACAGGCAGACTTGAGGGTAAGAAAGTCTCCAGGGTCAAAGCCG
1 AAAGTCTCCAAGGTCAAAGCCGACAGACAGACTTGA-GATGAGGCAGTCTCCAAGGTCAAAGCCG
* *
8272 ACAGGCAGACTTG-AGGTGAG
65 ACAGACAGAC-TGAAGGTAAG
* * * * * * *
8292 AGAGTATCCAAGGTCAAAGTCGGTA-AG-CAGAC-TGA-AGGTAGGAAAGTCTCCAGGGTCAACG
1 AAAGTCTCCAAGGTCAAAG-CCG-ACAGACAGACTTGAGATG-AGG-CAGTCTCCAAGGTCAAAG
* * * * *
8353 TCGGCAGGCAGACTTG-AGATGAG
62 CCGACAGACAGAC-TGAAGGTAAG
** * ** * ** * *
8376 GTAGTATGTAAGGTCAAAGCTG-CTAGGTAGACTTGAGATGAGGTAGTCTCCAAGGTCAAAGTCG
1 AAAGTCTCCAAGGTCAAAGCCGAC-AGACAGACTTGAGATGAGGCAGTCTCCAAGGTCAAAGCCG
*
8440 ACAGGCAGACTGAAGGGTAAG
65 ACAGACAGACTGAA-GGTAAG
* * * *
8461 AAAGTCCCCAAGGTCAAAGTCGACAGGCAGACTTAAGATGAGGCAGTCTCCAAGGTCAAAGCCGA
1 AAAGTCTCCAAGGTCAAAGCCGACAGACAGACTTGAGATGAGGCAGTCTCCAAGGTCAAAGCCGA
*
8526 CA-AGCAGACTTG-AGGTGAG
66 CAGA-CAGAC-TGAAGGTAAG
** * * * * * * *
8545 GCAGCCTCCAAGATCAAAGTCGACAGGCAAAC-TGA-AAGTAGGAAAGTCTCCAAGGTCAAAGCC
1 AAAGTCTCCAAGGTCAAAGCCGACAGACAGACTTGAGATG-AGG-CAGTCTCCAAGGTCAAAGCC
* * *
8608 GACAGGCAGACTTG-AGATGAG
64 GACAGACAGAC-TGAAGGTAAG
** * * * * * * * * *
8629 GCAGCCTCTAGGGTCAAAACTGACAGGCAGACTTGAGATGAGGTAGTCTCTAAGGTCAAAACCGA
1 AAAGTCTCCAAGGTCAAAGCCGACAGACAGACTTGAGATGAGGCAGTCTCCAAGGTCAAAGCCGA
* * *
8694 CAGGCAGACTTG-AGATGAG
66 CAGACAGAC-TGAAGGTAAG
** * * * * *
8713 GTAGTCTCAAAGGTCAAAGCCGACAGGCAGACTTGAGATGAGGTAGTCTCTAGGGTCAAAGCCGA
1 AAAGTCTCCAAGGTCAAAGCCGACAGACAGACTTGAGATGAGGCAGTCTCCAAGGTCAAAGCCGA
* *
8778 CAGATAGACTAAAGGGT-AG
66 CAGACAGACTGAA-GGTAAG
** * * * * * ** **
8797 AAAAGTCTTTAGGGTCAAAGCCGATA-AGTAGACTTGAGATAAGGTAGTCTTTAAGGTCAAAGTT
1 -AAAGTCTCCAAGGTCAAAGCCGACAGA-CAGACTTGAGATGAGGCAGTCTCCAAGGTCAAAGCC
8861 GACA-AGCAGACTGAAGGT-AG
64 GACAGA-CAGACTGAAGGTAAG
* * * *
8881 AAAAGTCTCCAAGGTCAAAGCCGACAAACCGACTTAAGATGAGGCAGTCTCCAAGGTCAAAGCTG
1 -AAAGTCTCCAAGGTCAAAGCCGACAGACAGACTTGAGATGAGGCAGTCTCCAAGGTCAAAGCCG
* * *
8946 ACA-AGCAGACTAAAAGTAAA
65 ACAGA-CAGACTGAAGGTAAG
* * * * * **
8966 AAAATCTCCAAGGTCAAAGCCGATA-AGTAGACTTGAGATG-GAGTAGTCTCCAAGGTTAAAATC
1 AAAGTCTCCAAGGTCAAAGCCGACAGA-CAGACTTGAGATGAG-GCAGTCTCCAAGGTCAAAGCC
*
9029 GACA-AGGAGACTGAAGGTAAG
64 GACAGA-CAGACTGAAGGTAAG
* * * *
9050 AAAGTCTCCAAGGATAAAAGCCGACA-AGTAGACTTGAGATGAGGCAATCTCCAAAGTCAAAGCC
1 AAAGTCTCCAAGG-TCAAAGCCGACAGA-CAGACTTGAGATGAGGCAGTCTCCAAGGTCAAAGCC
9114 GACA-ATCAGACTGAAGGT-AG
64 GACAGA-CAGACTGAAGGTAAG
* ** * * * *
9134 AAAAGTCTCCAGGGTCAAAGCCGACAGACAGACTTGAGATGAGATAGTTTCTAGGGTCAAAGCTG
1 -AAAGTCTCCAAGGTCAAAGCCGACAGACAGACTTGAGATGAGGCAGTCTCCAAGGTCAAAGCCG
* ** **
9199 ATAGGTAGACCAAAGGTAAG
65 ACAGACAGACTGAAGGTAAG
* ** * * * * *
9219 AAAAGTCTCCAGGGTCAAAGTTGATAGGCAGACTGGAGATAAGGCAGTCTCCAAGGTCAAAGTCG
1 -AAAGTCTCCAAGGTCAAAGCCGACAGACAGACTTGAGATGAGGCAGTCTCCAAGGTCAAAGCCG
9284 ACAGACAGACTGAAGGT-AG
65 ACAGACAGACTGAAGGTAAG
** * * * * * * *
9303 AAAAGTCTTTAAGGTCAAAGCCAACA-AGTATACTAGAGATGAGGCAGTCTCTAGGGTCAAAGTC
1 -AAAGTCTCCAAGGTCAAAGCCGACAGA-CAGACTTGAGATGAGGCAGTCTCCAAGGTCAAAGCC
9367 GACA-AGCAGACTGAAGGT-AG
64 GACAGA-CAGACTGAAGGTAAG
* ** * ** **
9387 AAAAATCTCCAAGGTCAAAGCCGACAGGTAAACTTGAGATGAGGCAACCTCCAAGGTCAAAGCTA
1 -AAAGTCTCCAAGGTCAAAGCCGACAGACAGACTTGAGATGAGGCAGTCTCCAAGGTCAAAGCCG
* **
9452 ATAGGTAGACTGAAGGTAAG
65 ACAGACAGACTGAAGGTAAG
* * * * * *
9472 AAAGTCT-CTAGAGTCAAAGCTGATAGACAGACTTGAGGTGAGGCAATCTCTAAGGTCAAAGCCG
1 AAAGTCTCCAAG-GTCAAAGCCGACAGACAGACTTGAGATGAGGCAGTCTCCAAGGTCAAAGCCG
*
9536 ACAGACAGACTGAGGGTAA
65 ACAGACAGACTGAAGGTAA
9555 AAAAATTCAA
Statistics
Matches: 1014, Mismatches: 209, Indels: 81
0.78 0.16 0.06
Matches are distributed among these distances:
82 2 0.00
83 20 0.02
84 682 0.67
85 298 0.29
86 11 0.01
87 1 0.00
ACGTcount: A:0.36, C:0.18, G:0.28, T:0.17
Consensus pattern (84 bp):
AAAGTCTCCAAGGTCAAAGCCGACAGACAGACTTGAGATGAGGCAGTCTCCAAGGTCAAAGCCGA
CAGACAGACTGAAGGTAAG
Found at i:10341 original size:14 final size:15
Alignment explanation
Indices: 10322--10354 Score: 59
Period size: 15 Copynumber: 2.3 Consensus size: 15
10312 ATAAAATGTC
10322 CAAAATG-AGAAGCT
1 CAAAATGAAGAAGCT
10336 CAAAATGAAGAAGCT
1 CAAAATGAAGAAGCT
10351 CAAA
1 CAAA
10355 CGAAAATGAT
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
14 7 0.39
15 11 0.61
ACGTcount: A:0.55, C:0.15, G:0.18, T:0.12
Consensus pattern (15 bp):
CAAAATGAAGAAGCT
Found at i:12456 original size:47 final size:46
Alignment explanation
Indices: 12400--12503 Score: 138
Period size: 47 Copynumber: 2.2 Consensus size: 46
12390 AAATGTCCAA
12400 AATGTATCGATACA-TGTTTCTGTGTATCGATTACAATGTATCAATAC
1 AATGTATCGATACATTGTTTCT-TGTATCGA-TACAATGTATCAATAC
* * **
12447 AATGTATCGATACATTTTTTCTTGTATCGATACATTGTATTGATAC
1 AATGTATCGATACATTGTTTCTTGTATCGATACAATGTATCAATAC
12493 AATTGTATCGA
1 AA-TGTATCGA
12504 ACAGGGTGAT
Statistics
Matches: 51, Mismatches: 4, Indels: 4
0.86 0.07 0.07
Matches are distributed among these distances:
46 15 0.29
47 30 0.59
48 6 0.12
ACGTcount: A:0.31, C:0.13, G:0.14, T:0.41
Consensus pattern (46 bp):
AATGTATCGATACATTGTTTCTTGTATCGATACAATGTATCAATAC
Found at i:12499 original size:14 final size:13
Alignment explanation
Indices: 12422--12503 Score: 59
Period size: 13 Copynumber: 6.6 Consensus size: 13
12412 CATGTTTCTG
*
12422 TGTATCGATTACAA
1 TGTATCGA-TACAT
* *
12436 TGTATCAATACAA
1 TGTATCGATACAT
12449 TGTATCGATACAT
1 TGTATCGATACAT
*
12462 T-T-T---TTC-T
1 TGTATCGATACAT
12469 TGTATCGATACAT
1 TGTATCGATACAT
*
12482 TGTATTGATACAAT
1 TGTATCGATAC-AT
12496 TGTATCGA
1 TGTATCGA
12504 ACAGGGTGAT
Statistics
Matches: 54, Mismatches: 7, Indels: 14
0.72 0.09 0.19
Matches are distributed among these distances:
7 2 0.04
8 3 0.06
9 1 0.02
11 1 0.02
12 3 0.06
13 28 0.52
14 16 0.30
ACGTcount: A:0.32, C:0.13, G:0.13, T:0.41
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:14317 original size:34 final size:35
Alignment explanation
Indices: 14277--14343 Score: 118
Period size: 35 Copynumber: 1.9 Consensus size: 35
14267 GCAAATAAAA
14277 TTTTTGACATG-ATTACTTGATTAAGGGGGAGAAT
1 TTTTTGACATGAATTACTTGATTAAGGGGGAGAAT
*
14311 TTTTTGATATGAATTACTTGATTAAGGGGGAGA
1 TTTTTGACATGAATTACTTGATTAAGGGGGAGA
14344 TTATTATAAA
Statistics
Matches: 31, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
34 10 0.32
35 21 0.68
ACGTcount: A:0.30, C:0.04, G:0.27, T:0.39
Consensus pattern (35 bp):
TTTTTGACATGAATTACTTGATTAAGGGGGAGAAT
Found at i:15077 original size:30 final size:30
Alignment explanation
Indices: 15041--15099 Score: 84
Period size: 30 Copynumber: 2.0 Consensus size: 30
15031 GCCAAACTTG
**
15041 TATCGATACAGCAAGTA-TGTATCGATACAA
1 TATCGATACA-CAAAAATTGTATCGATACAA
15071 TATCGATACACAAAAATTGTATCGATACA
1 TATCGATACACAAAAATTGTATCGATACA
15100 TTGGCTTGTA
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
29 4 0.15
30 22 0.85
ACGTcount: A:0.42, C:0.17, G:0.14, T:0.27
Consensus pattern (30 bp):
TATCGATACACAAAAATTGTATCGATACAA
Done.