genome.fa.s1014.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold1014
Parameters: 2 7 7 80 10 50 1000
Length:  54474

Tables:   1   

This is table  1  of  1  ( 45 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5331--5418	23	4.0	20	78	20	70	81	13	3	1	0.87
5333--5418	16	5.3	15	74	17	64	82	12	3	1	0.85
5333--5418	32	2.8	28	78	16	82	82	12	3	1	0.85
5335--5418	21	3.9	21	78	9	80	82	13	3	1	0.86
5368--5412	6	8.2	6	81	16	53	84	15	0	0	0.62
6811--6923	29	3.9	29	87	2	163	30	30	16	22	1.96
6815--6969	29	5.3	29	83	6	154	32	30	16	20	1.94
6811--6928	59	2.0	59	89	0	182	29	31	16	22	1.96
6898--6979	28	2.9	28	85	12	105	34	28	18	19	1.95
6810--6969	88	1.8	88	82	5	209	31	31	15	20	1.94
6991--7635	43	14.0	43	77	11	552	25	26	18	30	1.98
6986--7639	92	7.0	92	85	6	843	25	26	18	30	1.98
7031--7593	282	2.0	284	89	2	871	25	26	18	30	1.98
6986--7639	282	2.4	267	81	12	798	25	26	18	30	1.98
8344--8432	13	5.9	13	72	27	70	34	13	17	33	1.89
8324--8456	32	4.1	32	98	0	248	34	12	18	35	1.87
8322--8451	19	7.8	18	70	29	110	33	12	17	36	1.87
8494--8518	13	1.9	13	100	0	50	32	16	16	36	1.90
8527--8707	52	3.5	52	96	0	308	34	17	18	28	1.94
16336--16410	20	3.8	20	89	0	114	22	14	16	46	1.83
18754--19087	51	6.4	51	69	12	203	30	25	11	32	1.91
18863--18933	27	2.6	27	86	2	88	23	32	21	22	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18920--19087	52	3.2	52	80	2	178	31	25	10	32	1.89
19070--19151	28	2.9	28	85	7	105	24	31	17	26	1.97
18760--19144	211	1.8	211	88	2	594	29	26	12	31	1.93
31503--31570	12	5.6	12	84	8	84	86	10	2	0	0.67
31503--31570	15	4.2	16	82	17	88	86	10	2	0	0.67
31503--31570	1	68.0	1	74	0	55	86	10	2	0	0.67
32549--33216	59	11.4	59	88	5	889	24	29	21	25	1.99
35392--35475	16	5.2	16	77	11	100	0	7	7	85	0.73
35394--35475	32	2.6	32	100	0	164	0	7	7	85	0.75
35390--35484	32	2.7	35	84	12	133	0	9	6	84	0.78
35391--35475	1	85.0	1	76	0	62	0	7	7	85	0.73
43331--43827	55	9.1	54	83	10	625	28	30	20	20	1.98
43396--43799	212	1.9	212	88	5	611	28	30	20	20	1.97
44558--44611	21	2.6	21	79	5	65	35	14	16	33	1.90
44716--44782	33	2.0	33	85	0	89	25	13	16	44	1.84
47236--47307	27	2.6	28	86	2	92	23	36	20	19	1.95
47293--47460	52	3.3	51	81	2	201	32	26	9	32	1.88
47127--47518	211	1.9	210	87	3	581	29	27	12	30	1.93
49182--49234	13	4.5	13	71	26	55	33	13	16	35	1.88
49166--49234	33	2.1	33	89	5	104	31	13	18	36	1.89
49666--49716	20	2.5	21	87	3	68	41	7	17	33	1.79
53027--53077	19	2.7	20	84	9	70	29	15	15	39	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
53676--53759	37	2.3	38	81	8	93	34	23	4	36	1.76

Tables:   1

The End!