genome.fa.s1017.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold1017
Parameters: 2 7 7 80 10 50 1000
Length:  65279

Tables:   1   

This is table  1  of  1  ( 41 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6653--6722	35	2.0	35	91	0	113	24	10	22	42	1.84
6795--6866	35	2.1	35	89	5	110	29	18	15	37	1.91
7263--7400	46	3.3	41	76	10	134	37	7	6	48	1.57
8052--8307	78	3.3	78	83	4	270	26	10	22	41	1.85
8198--8420	119	1.9	117	84	3	295	28	8	20	43	1.81
8772--8985	109	2.0	108	97	0	401	31	14	16	37	1.89
11890--11923	14	2.4	14	90	0	59	38	17	23	20	1.93
13571--13613	17	2.6	17	81	3	52	74	2	20	2	1.04
15163--15409	97	2.5	96	87	3	334	27	27	14	30	1.95
20128--20202	37	2.0	36	80	14	82	72	9	12	6	1.29
20114--20214	45	2.2	46	83	13	122	70	10	10	7	1.34
21474--21746	27	10.0	27	85	4	352	23	31	15	30	1.95
21474--21745	109	2.5	109	87	1	375	23	31	15	30	1.95
21474--21811	55	6.2	54	81	6	351	24	30	15	29	1.95
21474--21767	82	3.6	81	84	4	360	23	31	15	29	1.95
21474--21811	82	4.1	83	81	7	341	24	30	15	29	1.95
21455--22362	28	31.9	28	81	8	644	27	29	16	26	1.97
21707--22360	115	5.7	112	79	10	590	28	29	17	24	1.97
21787--22365	143	4.0	141	85	6	721	29	29	17	23	1.97
22475--22591	48	2.5	47	84	4	139	20	23	19	36	1.95
25014--25253	97	2.5	97	87	2	322	29	27	12	30	1.93
25211--25261	27	1.9	26	92	4	84	25	35	13	25	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34057--34097	11	3.6	12	80	9	50	43	2	7	46	1.44
35779--35853	20	3.8	20	73	7	71	38	13	14	33	1.85
35736--35901	89	1.8	91	93	2	291	40	12	17	30	1.86
38039--38166	68	1.9	68	83	0	166	19	26	25	28	1.99
38220--38400	31	5.7	30	68	17	89	17	23	29	29	1.97
38093--38596	196	2.6	195	82	3	580	19	23	27	29	1.98
38082--38596	99	5.2	98	73	6	362	19	23	27	29	1.98
38556--38627	31	2.3	31	84	11	94	13	20	31	33	1.92
51396--51503	53	2.0	53	98	0	207	27	20	29	22	1.98
55371--55409	20	2.0	19	95	5	69	35	23	10	30	1.88
55419--55443	13	1.9	13	100	0	50	32	16	16	36	1.90
55431--55483	20	2.6	21	82	8	65	37	15	16	30	1.90
55398--55461	33	1.9	33	84	12	87	35	17	17	29	1.92
55544--55569	13	2.0	13	100	0	52	30	15	15	38	1.88
55524--55591	33	2.1	32	88	2	100	35	17	13	33	1.89
62027--62052	13	2.0	13	100	0	52	38	15	15	30	1.88
62009--62072	32	2.0	33	87	3	94	40	17	14	28	1.88
63645--63675	9	3.4	9	95	0	53	48	6	32	12	1.67
64277--64326	21	2.3	21	80	10	57	56	4	18	22	1.58

Tables:   1

The End!