Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Scaffold1018
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 62341
ACGTcount: A:0.37, C:0.13, G:0.14, T:0.37
Found at i:1183 original size:32 final size:33
Alignment explanation
Indices: 1118--1183 Score: 91
Period size: 33 Copynumber: 2.0 Consensus size: 33
1108 AAAAAATTTC
*
1118 AATTTATTTTTTAAAATAAGTATTTTTTATCAA
1 AATTTAATTTTTAAAATAAGTATTTTTTATCAA
*
1151 AATTTAATTTTTAAATTTAA-TATTTTTT-TCAA
1 AATTTAATTTTTAAA-ATAAGTATTTTTTATCAA
1183 A
1 A
1184 TTCTTTTAAA
Statistics
Matches: 30, Mismatches: 2, Indels: 3
0.86 0.06 0.09
Matches are distributed among these distances:
32 5 0.17
33 22 0.73
34 3 0.10
ACGTcount: A:0.39, C:0.03, G:0.02, T:0.56
Consensus pattern (33 bp):
AATTTAATTTTTAAAATAAGTATTTTTTATCAA
Found at i:2638 original size:19 final size:20
Alignment explanation
Indices: 2616--2654 Score: 62
Period size: 19 Copynumber: 2.0 Consensus size: 20
2606 TCATTAAAAA
2616 TTATTATATTTAT-TTTATT
1 TTATTATATTTATATTTATT
*
2635 TTATTATTTTTATATTTATT
1 TTATTATATTTATATTTATT
2655 AAATGCCATT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
19 12 0.67
20 6 0.33
ACGTcount: A:0.26, C:0.00, G:0.00, T:0.74
Consensus pattern (20 bp):
TTATTATATTTATATTTATT
Found at i:3583 original size:5 final size:5
Alignment explanation
Indices: 3562--3600 Score: 53
Period size: 5 Copynumber: 8.0 Consensus size: 5
3552 ATTTAAAACA
* *
3562 TATAA TATAT CAT-T TATAT TATAT TATAT TATAT TATAT
1 TATAT TATAT TATAT TATAT TATAT TATAT TATAT TATAT
3601 CATAATAAAA
Statistics
Matches: 30, Mismatches: 3, Indels: 2
0.86 0.09 0.06
Matches are distributed among these distances:
4 3 0.10
5 27 0.90
ACGTcount: A:0.41, C:0.03, G:0.00, T:0.56
Consensus pattern (5 bp):
TATAT
Found at i:5058 original size:18 final size:18
Alignment explanation
Indices: 5018--5070 Score: 53
Period size: 18 Copynumber: 3.2 Consensus size: 18
5008 TTTATATTTT
5018 AAAATTTA-T-ATA-ATA
1 AAAATTTATTAATATATA
*
5033 TAAA-TTATTAATATATA
1 AAAATTTATTAATATATA
5050 AAAATTTATATAA-ATATA
1 AAAATTTAT-TAATATATA
5068 AAA
1 AAA
5071 TCTTTTAAAT
Statistics
Matches: 31, Mismatches: 2, Indels: 7
0.77 0.05 0.17
Matches are distributed among these distances:
14 3 0.10
15 4 0.13
16 3 0.10
17 6 0.19
18 12 0.39
19 3 0.10
ACGTcount: A:0.60, C:0.00, G:0.00, T:0.40
Consensus pattern (18 bp):
AAAATTTATTAATATATA
Found at i:5397 original size:17 final size:17
Alignment explanation
Indices: 5375--5420 Score: 67
Period size: 17 Copynumber: 2.7 Consensus size: 17
5365 TATAATTTTA
5375 ATATATATATTAGATA-T
1 ATATATATATTA-ATATT
5392 ATATATATATTAATATT
1 ATATATATATTAATATT
*
5409 ATATTTATATTA
1 ATATATATATTA
5421 TTATAAAAAA
Statistics
Matches: 27, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
16 3 0.11
17 24 0.89
ACGTcount: A:0.46, C:0.00, G:0.02, T:0.52
Consensus pattern (17 bp):
ATATATATATTAATATT
Found at i:6901 original size:11 final size:11
Alignment explanation
Indices: 6885--6926 Score: 50
Period size: 11 Copynumber: 3.8 Consensus size: 11
6875 AATTTATGAG
6885 TATTTTTTAAA
1 TATTTTTTAAA
6896 TATTTTTTAAA
1 TATTTTTTAAA
*
6907 -ATTATTTTATA
1 TATT-TTTTAAA
*
6918 TATTATTTA
1 TATTTTTTA
6927 TTATAATAAT
Statistics
Matches: 27, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
10 3 0.11
11 21 0.78
12 3 0.11
ACGTcount: A:0.36, C:0.00, G:0.00, T:0.64
Consensus pattern (11 bp):
TATTTTTTAAA
Found at i:7569 original size:21 final size:22
Alignment explanation
Indices: 7543--7587 Score: 74
Period size: 22 Copynumber: 2.1 Consensus size: 22
7533 AGAGACCAAA
7543 TGTC-AAAAATTCCTAATTAAT
1 TGTCAAAAAATTCCTAATTAAT
*
7564 TGTCAAAAAATTCTTAATTAAT
1 TGTCAAAAAATTCCTAATTAAT
7586 TG
1 TG
7588 ATTCGATGAA
Statistics
Matches: 22, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
21 4 0.18
22 18 0.82
ACGTcount: A:0.42, C:0.11, G:0.07, T:0.40
Consensus pattern (22 bp):
TGTCAAAAAATTCCTAATTAAT
Found at i:7916 original size:13 final size:13
Alignment explanation
Indices: 7900--7924 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
7890 ATAAATTATA
7900 ATAAATATTAATT
1 ATAAATATTAATT
7913 ATAAATATTAAT
1 ATAAATATTAAT
7925 AATTAAAAAT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.56, C:0.00, G:0.00, T:0.44
Consensus pattern (13 bp):
ATAAATATTAATT
Found at i:7927 original size:16 final size:17
Alignment explanation
Indices: 7908--7944 Score: 58
Period size: 16 Copynumber: 2.2 Consensus size: 17
7898 TAATAAATAT
*
7908 TAATTATAAATATT-AA
1 TAATTAAAAATATTAAA
7924 TAATTAAAAATATTAAA
1 TAATTAAAAATATTAAA
7941 TAAT
1 TAAT
7945 AATTATAACA
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
16 13 0.68
17 6 0.32
ACGTcount: A:0.59, C:0.00, G:0.00, T:0.41
Consensus pattern (17 bp):
TAATTAAAAATATTAAA
Found at i:9191 original size:25 final size:27
Alignment explanation
Indices: 9149--9202 Score: 69
Period size: 25 Copynumber: 2.1 Consensus size: 27
9139 ATGCCTTGGT
*
9149 TTTTTAAAAGATTTAAA-TTCA-AAAA
1 TTTTTAAAAGATTAAAATTTCATAAAA
9174 TTTTTAAAA-ATTAAAAATTTCATAAAA
1 TTTTTAAAAGATT-AAAATTTCATAAAA
9201 TT
1 TT
9203 ATAAAATTAT
Statistics
Matches: 25, Mismatches: 1, Indels: 4
0.83 0.03 0.13
Matches are distributed among these distances:
24 3 0.12
25 12 0.48
26 4 0.16
27 6 0.24
ACGTcount: A:0.52, C:0.04, G:0.02, T:0.43
Consensus pattern (27 bp):
TTTTTAAAAGATTAAAATTTCATAAAA
Found at i:9199 original size:18 final size:16
Alignment explanation
Indices: 9163--9215 Score: 54
Period size: 17 Copynumber: 3.1 Consensus size: 16
9153 TAAAAGATTT
*
9163 AAATTCAAAAATTTTTAA
1 AAATT-AAAAATTTAT-A
9181 AAATTAAAAATTTCATA
1 AAATTAAAAATTT-ATA
9198 AAATTATAAAA-TTATA
1 AAATTA-AAAATTTATA
9214 AA
1 AA
9216 CATGATTTTT
Statistics
Matches: 32, Mismatches: 1, Indels: 6
0.82 0.03 0.15
Matches are distributed among these distances:
16 5 0.16
17 17 0.53
18 10 0.31
ACGTcount: A:0.60, C:0.04, G:0.00, T:0.36
Consensus pattern (16 bp):
AAATTAAAAATTTATA
Found at i:9794 original size:20 final size:20
Alignment explanation
Indices: 9771--9831 Score: 115
Period size: 20 Copynumber: 3.1 Consensus size: 20
9761 TAATTTTAAA
9771 TATATTTTATTAAATATATT
1 TATATTTTATTAAATATATT
9791 TATATTTTATTAAATATATT
1 TATATTTTATTAAATATATT
9811 TATATTTTATT-AATATATT
1 TATATTTTATTAAATATATT
9830 TA
1 TA
9832 AATATTAATT
Statistics
Matches: 41, Mismatches: 0, Indels: 1
0.98 0.00 0.02
Matches are distributed among these distances:
19 10 0.24
20 31 0.76
ACGTcount: A:0.39, C:0.00, G:0.00, T:0.61
Consensus pattern (20 bp):
TATATTTTATTAAATATATT
Found at i:9811 original size:14 final size:15
Alignment explanation
Indices: 9766--9796 Score: 55
Period size: 14 Copynumber: 2.1 Consensus size: 15
9756 TTTTTTAATT
9766 TTAAATATATTT-TA
1 TTAAATATATTTATA
9780 TTAAATATATTTATA
1 TTAAATATATTTATA
9795 TT
1 TT
9797 TTATTAAATA
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 12 0.75
15 4 0.25
ACGTcount: A:0.42, C:0.00, G:0.00, T:0.58
Consensus pattern (15 bp):
TTAAATATATTTATA
Found at i:9991 original size:9 final size:9
Alignment explanation
Indices: 9935--9993 Score: 55
Period size: 9 Copynumber: 6.4 Consensus size: 9
9925 TTAAAATTTA
9935 AATTAAATT
1 AATTAAATT
*
9944 AATCAAATT
1 AATTAAATT
*
9953 AATTAAACTA
1 AATTAAA-TT
*
9963 AATTTAATT
1 AATTAAATT
***
9972 AATTTTTTT
1 AATTAAATT
9981 AATTAAATT
1 AATTAAATT
9990 AATT
1 AATT
9994 TTAATCCACT
Statistics
Matches: 39, Mismatches: 10, Indels: 2
0.76 0.20 0.04
Matches are distributed among these distances:
9 32 0.82
10 7 0.18
ACGTcount: A:0.49, C:0.03, G:0.00, T:0.47
Consensus pattern (9 bp):
AATTAAATT
Found at i:10275 original size:16 final size:18
Alignment explanation
Indices: 10254--10296 Score: 63
Period size: 16 Copynumber: 2.5 Consensus size: 18
10244 TTTATATGTA
10254 TTTTAAAATTTTTT-A-T
1 TTTTAAAATTTTTTGACT
*
10270 TTTTAATATTTTTTGACT
1 TTTTAAAATTTTTTGACT
10288 TTTTAAAAT
1 TTTTAAAAT
10297 ATTTCTAAAT
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
16 13 0.57
17 1 0.04
18 9 0.39
ACGTcount: A:0.30, C:0.02, G:0.02, T:0.65
Consensus pattern (18 bp):
TTTTAAAATTTTTTGACT
Found at i:10311 original size:20 final size:20
Alignment explanation
Indices: 10288--10330 Score: 61
Period size: 20 Copynumber: 2.1 Consensus size: 20
10278 TTTTTTGACT
*
10288 TTTTAAAATAT-TTCTAAATA
1 TTTTAAAAAATATT-TAAATA
10308 TTTTAAAAAATATTTAAATA
1 TTTTAAAAAATATTTAAATA
10328 TTT
1 TTT
10331 AAATTTTTAT
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
20 19 0.90
21 2 0.10
ACGTcount: A:0.47, C:0.02, G:0.00, T:0.51
Consensus pattern (20 bp):
TTTTAAAAAATATTTAAATA
Found at i:10339 original size:16 final size:16
Alignment explanation
Indices: 10315--10371 Score: 51
Period size: 16 Copynumber: 3.4 Consensus size: 16
10305 ATATTTTAAA
* *
10315 AAATATTTAAATATTT
1 AAATTTTTAAATTTTT
10331 AAATTTTTATAAATTTTT
1 AAA-TTTT-TAAATTTTT
** *
10349 ATTTTTTTAATTTTTT
1 AAATTTTTAAATTTTT
10365 AAATTTT
1 AAATTTT
10372 AATGATATGG
Statistics
Matches: 32, Mismatches: 7, Indels: 4
0.74 0.16 0.09
Matches are distributed among these distances:
16 16 0.50
17 7 0.22
18 9 0.28
ACGTcount: A:0.37, C:0.00, G:0.00, T:0.63
Consensus pattern (16 bp):
AAATTTTTAAATTTTT
Found at i:10349 original size:18 final size:18
Alignment explanation
Indices: 10322--10371 Score: 59
Period size: 16 Copynumber: 2.9 Consensus size: 18
10312 AAAAAATATT
*
10322 TAAATATTTAAATTTTTA
1 TAAATTTTTAAATTTTTA
*
10340 TAAATTTTT--ATTTTTT
1 TAAATTTTTAAATTTTTA
*
10356 TAATTTTTTAAATTTT
1 TAAATTTTTAAATTTT
10372 AATGATATGG
Statistics
Matches: 27, Mismatches: 3, Indels: 4
0.79 0.09 0.12
Matches are distributed among these distances:
16 14 0.52
18 13 0.48
ACGTcount: A:0.34, C:0.00, G:0.00, T:0.66
Consensus pattern (18 bp):
TAAATTTTTAAATTTTTA
Found at i:15571 original size:21 final size:23
Alignment explanation
Indices: 15522--15572 Score: 63
Period size: 21 Copynumber: 2.3 Consensus size: 23
15512 ATTTATAATA
*
15522 TTTTTTATTTGTTAAATTATAGT
1 TTTTTTATTTGTTAAATTAGAGT
15545 TTTTTT-TTT-TTAAATT-GAGT
1 TTTTTTATTTGTTAAATTAGAGT
15565 TTGTTTTA
1 TT-TTTTA
15573 GATATTTTGA
Statistics
Matches: 25, Mismatches: 1, Indels: 5
0.81 0.03 0.16
Matches are distributed among these distances:
20 5 0.20
21 11 0.44
22 3 0.12
23 6 0.24
ACGTcount: A:0.22, C:0.00, G:0.10, T:0.69
Consensus pattern (23 bp):
TTTTTTATTTGTTAAATTAGAGT
Found at i:17463 original size:5 final size:5
Alignment explanation
Indices: 17453--17518 Score: 57
Period size: 5 Copynumber: 13.4 Consensus size: 5
17443 AAAAATTTTA
* *
17453 AATAT AATAT AATAT AATAT AA-A- AAAAT AATAT AAATAT GAATAT ATTA-
1 AATAT AATAT AATAT AATAT AATAT AATAT AATAT -AATAT -AATAT AATAT
* *
17502 AAAAT TATAT AATAT AA
1 AATAT AATAT AATAT AA
17519 ATTATTTACA
Statistics
Matches: 49, Mismatches: 8, Indels: 8
0.75 0.12 0.12
Matches are distributed among these distances:
3 2 0.04
4 4 0.08
5 33 0.67
6 10 0.20
ACGTcount: A:0.64, C:0.00, G:0.02, T:0.35
Consensus pattern (5 bp):
AATAT
Found at i:17542 original size:32 final size:31
Alignment explanation
Indices: 17479--17558 Score: 88
Period size: 32 Copynumber: 2.5 Consensus size: 31
17469 ATATAAAAAA
** *
17479 ATAATATAAATATGAATATATTAAAAATTAT
1 ATAATATAAATATTTACATATTAAAAATTAT
**
17510 ATAATATAAATTATTTACATATTAAACTTTAT
1 ATAATATAAA-TATTTACATATTAAAAATTAT
17542 ATAAATATATAATATTT
1 AT-AATATA-AATATTT
17559 TAAATATGAT
Statistics
Matches: 41, Mismatches: 5, Indels: 4
0.82 0.10 0.08
Matches are distributed among these distances:
31 10 0.24
32 18 0.44
33 11 0.27
34 2 0.05
ACGTcount: A:0.53, C:0.03, G:0.01, T:0.44
Consensus pattern (31 bp):
ATAATATAAATATTTACATATTAAAAATTAT
Found at i:17595 original size:23 final size:24
Alignment explanation
Indices: 17569--17620 Score: 81
Period size: 23 Copynumber: 2.2 Consensus size: 24
17559 TAAATATGAT
*
17569 TATAATATATA-AAATTATATAAA
1 TATAATATACACAAATTATATAAA
17592 TATAA-ATACACAAATTATATAAA
1 TATAATATACACAAATTATATAAA
17615 TATAAT
1 TATAAT
17621 GTTCACATGC
Statistics
Matches: 26, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
22 4 0.15
23 22 0.85
ACGTcount: A:0.60, C:0.04, G:0.00, T:0.37
Consensus pattern (24 bp):
TATAATATACACAAATTATATAAA
Found at i:17598 original size:15 final size:15
Alignment explanation
Indices: 17454--17598 Score: 69
Period size: 15 Copynumber: 9.9 Consensus size: 15
17444 AAAATTTTAA
*
17454 ATAT-AATATAATATA
1 ATATAAATATAA-ATT
*
17469 ATATAAA-A-AAATA
1 ATATAAATATAAATT
*
17482 ATATAAATATGAA-T
1 ATATAAATATAAATT
*
17496 ATAT---TAAAAATT
1 ATATAAATATAAATT
17508 ATAT-AATATAAATT
1 ATATAAATATAAATT
* *
17522 ATTTACATATTAAACTTT
1 ATATAAATA-TAAA--TT
17540 ATATAAATATATAA-T
1 ATATAAATATA-AATT
* *
17555 ATTTTAAATAT-GATT
1 A-TATAAATATAAATT
*
17570 ATA-ATATATAAAATT
1 ATATAAATAT-AAATT
17585 ATATAAATATAAAT
1 ATATAAATATAAAT
17599 ACACAAATTA
Statistics
Matches: 99, Mismatches: 15, Indels: 32
0.68 0.10 0.22
Matches are distributed among these distances:
11 4 0.04
12 5 0.05
13 15 0.15
14 19 0.19
15 24 0.24
16 19 0.19
17 2 0.02
18 11 0.11
ACGTcount: A:0.57, C:0.01, G:0.01, T:0.41
Consensus pattern (15 bp):
ATATAAATATAAATT
Found at i:18216 original size:15 final size:16
Alignment explanation
Indices: 18181--18214 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
18171 GTATTTACAT
*
18181 AAATATTTAATATTAA
1 AAATATTAAATATTAA
*
18197 AAATATTAAATTTTAA
1 AAATATTAAATATTAA
18213 AA
1 AA
18215 TAGGAATTTT
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.59, C:0.00, G:0.00, T:0.41
Consensus pattern (16 bp):
AAATATTAAATATTAA
Found at i:19176 original size:2 final size:2
Alignment explanation
Indices: 19169--19220 Score: 52
Period size: 2 Copynumber: 26.5 Consensus size: 2
19159 GAAGTGGGTT
* * * *
19169 TA TA TA TA CA TA TA TA TA TA TA TG TA TA TA TT TA -A TT TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
*
19210 TA TG TA TA TA T
1 TA TA TA TA TA T
19221 TTATTTATTT
Statistics
Matches: 39, Mismatches: 10, Indels: 2
0.76 0.20 0.04
Matches are distributed among these distances:
1 1 0.03
2 38 0.97
ACGTcount: A:0.42, C:0.02, G:0.04, T:0.52
Consensus pattern (2 bp):
TA
Found at i:19211 original size:21 final size:20
Alignment explanation
Indices: 19185--19228 Score: 79
Period size: 21 Copynumber: 2.1 Consensus size: 20
19175 TACATATATA
19185 TATATATGTATATATTTAATT
1 TATATATGTATATATTT-ATT
19206 TATATATGTATATATTTATT
1 TATATATGTATATATTTATT
19226 TAT
1 TAT
19229 TTGTTTCATA
Statistics
Matches: 23, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
20 6 0.26
21 17 0.74
ACGTcount: A:0.36, C:0.00, G:0.05, T:0.59
Consensus pattern (20 bp):
TATATATGTATATATTTATT
Found at i:19229 original size:8 final size:8
Alignment explanation
Indices: 19167--19230 Score: 53
Period size: 8 Copynumber: 8.4 Consensus size: 8
19157 TTGAAGTGGG
19167 TTTATATA
1 TTTATATA
**
19175 TACATATA
1 TTTATATA
*
19183 TATATATA
1 TTTATATA
*
19191 TGTATATA
1 TTTATATA
19199 -TT-TA-A
1 TTTATATA
19204 TTTATATA
1 TTTATATA
*
19212 TGTATATA
1 TTTATATA
*
19220 TTTATTTA
1 TTTATATA
19228 TTT
1 TTT
19231 GTTTCATATC
Statistics
Matches: 45, Mismatches: 8, Indels: 6
0.76 0.14 0.10
Matches are distributed among these distances:
5 1 0.02
6 4 0.09
7 3 0.07
8 37 0.82
ACGTcount: A:0.38, C:0.02, G:0.03, T:0.58
Consensus pattern (8 bp):
TTTATATA
Found at i:19239 original size:29 final size:30
Alignment explanation
Indices: 19177--19239 Score: 76
Period size: 29 Copynumber: 2.2 Consensus size: 30
19167 TTTATATATA
19177 CATATATATATATATGTATATATTTAATTT
1 CATATATATATATATGTATATATTTAATTT
* * * *
19207 -ATATATGTATATATTTATTTATTT-GTTT
1 CATATATATATATATGTATATATTTAATTT
19235 CATAT
1 CATAT
19240 CAATGTTCTT
Statistics
Matches: 28, Mismatches: 4, Indels: 3
0.80 0.11 0.09
Matches are distributed among these distances:
28 3 0.11
29 25 0.89
ACGTcount: A:0.35, C:0.03, G:0.05, T:0.57
Consensus pattern (30 bp):
CATATATATATATATGTATATATTTAATTT
Found at i:20095 original size:22 final size:22
Alignment explanation
Indices: 20069--20136 Score: 70
Period size: 22 Copynumber: 3.1 Consensus size: 22
20059 CTGTTTTAAG
20069 TTTAAATTATTTATATTTAATA
1 TTTAAATTATTTATATTTAATA
*
20091 TTTAAATTA-TAAT-TTTAA-A
1 TTTAAATTATTTATATTTAATA
* *
20110 ATTAAATCTATTTAAATTTAAATA
1 TTTAAAT-TATTTATATTT-AATA
20134 TTT
1 TTT
20137 TTTAAATTTG
Statistics
Matches: 36, Mismatches: 5, Indels: 8
0.73 0.10 0.16
Matches are distributed among these distances:
19 7 0.19
20 7 0.19
21 5 0.14
22 12 0.33
23 2 0.06
24 3 0.08
ACGTcount: A:0.44, C:0.01, G:0.00, T:0.54
Consensus pattern (22 bp):
TTTAAATTATTTATATTTAATA
Found at i:21803 original size:20 final size:21
Alignment explanation
Indices: 21778--21826 Score: 64
Period size: 23 Copynumber: 2.3 Consensus size: 21
21768 TTGATTTATT
21778 TTTAATATT-TAAATATTAAA
1 TTTAATATTATAAATATTAAA
21798 TTTAATATTAAATAAATATTAAA
1 TTTAATATT--ATAAATATTAAA
*
21821 TATAAT
1 TTTAAT
21827 TAATGATAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 3
0.86 0.03 0.10
Matches are distributed among these distances:
20 9 0.36
23 16 0.64
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (21 bp):
TTTAATATTATAAATATTAAA
Found at i:21817 original size:11 final size:11
Alignment explanation
Indices: 21787--21822 Score: 54
Period size: 11 Copynumber: 3.2 Consensus size: 11
21777 TTTTAATATT
21787 TAAATATTAAA
1 TAAATATTAAA
*
21798 TTTAATATTAAA
1 -TAAATATTAAA
21810 TAAATATTAAA
1 TAAATATTAAA
21821 TA
1 TA
21823 TAATTAATGA
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
11 12 0.55
12 10 0.45
ACGTcount: A:0.58, C:0.00, G:0.00, T:0.42
Consensus pattern (11 bp):
TAAATATTAAA
Found at i:22506 original size:14 final size:14
Alignment explanation
Indices: 22489--22531 Score: 77
Period size: 14 Copynumber: 3.1 Consensus size: 14
22479 AATATCAAAT
22489 AAAAAATTTAATTA
1 AAAAAATTTAATTA
22503 AAAAAATTTAATTA
1 AAAAAATTTAATTA
*
22517 AAAAAATTAAATTA
1 AAAAAATTTAATTA
22531 A
1 A
22532 TTTTTTTTAA
Statistics
Matches: 28, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
14 28 1.00
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (14 bp):
AAAAAATTTAATTA
Found at i:22507 original size:28 final size:28
Alignment explanation
Indices: 22463--22531 Score: 81
Period size: 28 Copynumber: 2.6 Consensus size: 28
22453 TTGATTTAAA
*
22463 AAAAAAATTAAA-TAAAAATA-TCAAAT
1 AAAAAAATTAAATTAAAAAAATTCAAAT
* * *
22489 -AAAAAATTTAATTAAAAAAATTTAATT
1 AAAAAAATTAAATTAAAAAAATTCAAAT
22516 AAAAAAATTAAATTAA
1 AAAAAAATTAAATTAA
22532 TTTTTTTTAA
Statistics
Matches: 35, Mismatches: 5, Indels: 4
0.80 0.11 0.09
Matches are distributed among these distances:
25 10 0.29
26 7 0.20
27 4 0.11
28 14 0.40
ACGTcount: A:0.70, C:0.01, G:0.00, T:0.29
Consensus pattern (28 bp):
AAAAAAATTAAATTAAAAAAATTCAAAT
Found at i:22687 original size:21 final size:22
Alignment explanation
Indices: 22658--22712 Score: 76
Period size: 21 Copynumber: 2.5 Consensus size: 22
22648 TTTATTATTT
*
22658 ATATTTAAAAATTTAAATAAAA
1 ATATATAAAAATTTAAATAAAA
*
22680 A-ATATAAAAATTTACATAAAA
1 ATATATAAAAATTTAAATAAAA
22701 ATTATATAAAAA
1 A-TATATAAAAA
22713 AAATTTTAAA
Statistics
Matches: 29, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
21 19 0.66
22 1 0.03
23 9 0.31
ACGTcount: A:0.65, C:0.02, G:0.00, T:0.33
Consensus pattern (22 bp):
ATATATAAAAATTTAAATAAAA
Found at i:22709 original size:11 final size:12
Alignment explanation
Indices: 22663--22712 Score: 54
Period size: 12 Copynumber: 4.5 Consensus size: 12
22653 TATTTATATT
*
22663 TAAAAATTTAAA
1 TAAAAATTTATA
22675 TAAAAA---ATA
1 TAAAAATTTATA
*
22684 TAAAAATTTACA
1 TAAAAATTTATA
22696 TAAAAA-TTATA
1 TAAAAATTTATA
22707 TAAAAA
1 TAAAAA
22713 AAATTTTAAA
Statistics
Matches: 32, Mismatches: 3, Indels: 7
0.76 0.07 0.17
Matches are distributed among these distances:
9 8 0.25
11 10 0.31
12 14 0.44
ACGTcount: A:0.68, C:0.02, G:0.00, T:0.30
Consensus pattern (12 bp):
TAAAAATTTATA
Found at i:22722 original size:23 final size:24
Alignment explanation
Indices: 22696--22751 Score: 60
Period size: 23 Copynumber: 2.3 Consensus size: 24
22686 AAAATTTACA
*
22696 TAAAAATTATATAAAAAA-AATTT
1 TAAAAATTATATAAAAAATAATAT
** *
22719 TAAATTTTTTATAAAAAATAATAT
1 TAAAAATTATATAAAAAATAATAT
22743 TAACAAATT
1 TAA-AAATT
22752 TAAATTTATA
Statistics
Matches: 25, Mismatches: 6, Indels: 2
0.76 0.18 0.06
Matches are distributed among these distances:
23 15 0.60
24 7 0.28
25 3 0.12
ACGTcount: A:0.59, C:0.02, G:0.00, T:0.39
Consensus pattern (24 bp):
TAAAAATTATATAAAAAATAATAT
Found at i:22774 original size:10 final size:10
Alignment explanation
Indices: 22759--22823 Score: 51
Period size: 10 Copynumber: 6.3 Consensus size: 10
22749 ATTTAAATTT
22759 ATAAATATAA
1 ATAAATATAA
*
22769 ATAAATTTAA
1 ATAAATATAA
*
22779 ATAAAAATTTAA
1 AT--AAATATAA
*
22791 ATTAAATTTAA
1 A-TAAATATAA
*
22802 ATAAATATAT
1 ATAAATATAA
*
22812 A-AAATATTA
1 ATAAATATAA
22821 ATA
1 ATA
22824 CAACGAATAA
Statistics
Matches: 46, Mismatches: 5, Indels: 8
0.78 0.08 0.14
Matches are distributed among these distances:
9 7 0.15
10 20 0.43
11 9 0.20
12 9 0.20
13 1 0.02
ACGTcount: A:0.63, C:0.00, G:0.00, T:0.37
Consensus pattern (10 bp):
ATAAATATAA
Found at i:22800 original size:23 final size:22
Alignment explanation
Indices: 22730--22814 Score: 82
Period size: 23 Copynumber: 3.7 Consensus size: 22
22720 AAATTTTTTA
* *
22730 TAAA-AAATAATATTAACAAATT
1 TAAATAAA-AATATAAATAAATT
*
22752 TAAATTTATAAATATAAATAAATT
1 TAAA--TAAAAATATAAATAAATT
*
22776 TAAATAAAAATTTAAATTAAATT
1 TAAATAAAAATATAAA-TAAATT
*
22799 TAAATAAATATATAAA
1 TAAATAAAAATATAAA
22815 ATATTAATAC
Statistics
Matches: 52, Mismatches: 7, Indels: 7
0.79 0.11 0.11
Matches are distributed among these distances:
22 14 0.27
23 20 0.38
24 16 0.31
25 2 0.04
ACGTcount: A:0.62, C:0.01, G:0.00, T:0.36
Consensus pattern (22 bp):
TAAATAAAAATATAAATAAATT
Found at i:23676 original size:2 final size:2
Alignment explanation
Indices: 23669--23693 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
23659 CCTGACTTTC
23669 AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT A
23694 AAATTTTGGT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:26770 original size:91 final size:91
Alignment explanation
Indices: 26615--26798 Score: 332
Period size: 91 Copynumber: 2.0 Consensus size: 91
26605 TCTTATGTCC
* *
26615 AATATGTTTTTCAAGTATATATTGTGAATTATGTATCAAATGTTATTTGGTCATGATTATAACTT
1 AATATGTTTTTCAAGTATATATTGTGAATTATGTATCAAATATTATTTGGTCATGACTATAACTT
*
26680 CTATTTGTATATATAATTAATCTCGT
66 CTATTTGCATATATAATTAATCTCGT
*
26706 AATATGTTTTTCAAGTATATATTGTGAATTATGTATCAAATATTATTTGGTCGTGACTATAACTT
1 AATATGTTTTTCAAGTATATATTGTGAATTATGTATCAAATATTATTTGGTCATGACTATAACTT
26771 CTATTTGCATATATAATTAATCTCGT
66 CTATTTGCATATATAATTAATCTCGT
26797 AA
1 AA
26799 AAGAATACTT
Statistics
Matches: 89, Mismatches: 4, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
91 89 1.00
ACGTcount: A:0.33, C:0.09, G:0.12, T:0.47
Consensus pattern (91 bp):
AATATGTTTTTCAAGTATATATTGTGAATTATGTATCAAATATTATTTGGTCATGACTATAACTT
CTATTTGCATATATAATTAATCTCGT
Found at i:27884 original size:2 final size:2
Alignment explanation
Indices: 27877--27912 Score: 72
Period size: 2 Copynumber: 18.0 Consensus size: 2
27867 TTTTCCCTTC
27877 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
27913 CTTGGGGAGA
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 34 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:28566 original size:2 final size:2
Alignment explanation
Indices: 28561--28587 Score: 54
Period size: 2 Copynumber: 13.5 Consensus size: 2
28551 TCTCTCTCTC
28561 TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA T
28588 TTAAATTTTT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 25 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:31092 original size:20 final size:20
Alignment explanation
Indices: 31064--31101 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
31054 AAAGTTGACT
*
31064 AATTTGATTAATAATTAATC
1 AATTCGATTAATAATTAATC
*
31084 AATTCGATTAATAGTTAA
1 AATTCGATTAATAATTAA
31102 ATTATCCGAA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.45, C:0.05, G:0.08, T:0.42
Consensus pattern (20 bp):
AATTCGATTAATAATTAATC
Found at i:32695 original size:14 final size:14
Alignment explanation
Indices: 32669--32701 Score: 50
Period size: 14 Copynumber: 2.4 Consensus size: 14
32659 TATTTAACTG
32669 CTTTTAAATTTAAA
1 CTTTTAAATTTAAA
32683 -TTTTAATATTTAAA
1 CTTTTAA-ATTTAAA
32697 CTTTT
1 CTTTT
32702 CTTTTTTTTC
Statistics
Matches: 17, Mismatches: 0, Indels: 3
0.85 0.00 0.15
Matches are distributed among these distances:
13 6 0.35
14 7 0.41
15 4 0.24
ACGTcount: A:0.36, C:0.06, G:0.00, T:0.58
Consensus pattern (14 bp):
CTTTTAAATTTAAA
Found at i:38222 original size:24 final size:25
Alignment explanation
Indices: 38191--38238 Score: 71
Period size: 25 Copynumber: 2.0 Consensus size: 25
38181 AAAAATATTA
*
38191 AAATATGACA-TAACACAAAAAAAT
1 AAATATGACACGAACACAAAAAAAT
*
38215 AAATATGACACGAATACAAAAAAA
1 AAATATGACACGAACACAAAAAAA
38239 GTATCAATTA
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
24 10 0.48
25 11 0.52
ACGTcount: A:0.67, C:0.12, G:0.06, T:0.15
Consensus pattern (25 bp):
AAATATGACACGAACACAAAAAAAT
Found at i:38362 original size:16 final size:16
Alignment explanation
Indices: 38341--38378 Score: 51
Period size: 16 Copynumber: 2.4 Consensus size: 16
38331 AATTATATAT
* *
38341 ATAAATATAGATTTTA
1 ATAAATAAAGATATTA
38357 ATAAATAAAGATATTA
1 ATAAATAAAGATATTA
38373 A-AAATA
1 ATAAATA
38379 GTATATTATA
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
15 5 0.25
16 15 0.75
ACGTcount: A:0.61, C:0.00, G:0.05, T:0.34
Consensus pattern (16 bp):
ATAAATAAAGATATTA
Found at i:38586 original size:16 final size:16
Alignment explanation
Indices: 38537--38605 Score: 61
Period size: 16 Copynumber: 4.3 Consensus size: 16
38527 CCAAATCCAA
*
38537 AAAAAGCTT-GAACTCG
1 AAAAAG-TTCGAACCCG
* * *
38553 AAAATGTTCAAACTCG
1 AAAAAGTTCGAACCCG
*
38569 AAAAAGTTTGAACCCG
1 AAAAAGTTCGAACCCG
38585 AAAAAGGTTCGAACCC-
1 AAAAA-GTTCGAACCCG
38601 AAAAA
1 AAAAA
38606 ACTAAACCCA
Statistics
Matches: 44, Mismatches: 7, Indels: 4
0.80 0.13 0.07
Matches are distributed among these distances:
15 2 0.05
16 33 0.75
17 9 0.20
ACGTcount: A:0.48, C:0.19, G:0.16, T:0.17
Consensus pattern (16 bp):
AAAAAGTTCGAACCCG
Found at i:38605 original size:32 final size:32
Alignment explanation
Indices: 38537--38605 Score: 77
Period size: 32 Copynumber: 2.2 Consensus size: 32
38527 CCAAATCCAA
* * *
38537 AAAAAGCTTGAACTCGAAAATGTTCAAACTCG
1 AAAAAGCTTGAACCCGAAAAGGTTCAAACTCC
* *
38569 AAAAAGTTTGAACCCGAAAAAGGTTCGAAC-CC
1 AAAAAGCTTGAACCCG-AAAAGGTTCAAACTCC
38601 AAAAA
1 AAAAA
38606 ACTAAACCCA
Statistics
Matches: 31, Mismatches: 5, Indels: 2
0.82 0.13 0.05
Matches are distributed among these distances:
32 20 0.65
33 11 0.35
ACGTcount: A:0.48, C:0.19, G:0.16, T:0.17
Consensus pattern (32 bp):
AAAAAGCTTGAACCCGAAAAGGTTCAAACTCC
Found at i:45353 original size:13 final size:14
Alignment explanation
Indices: 45326--45354 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
45316 CTAAATTTTG
45326 TTTGTTTTTTCAAT
1 TTTGTTTTTTCAAT
45340 TTTGTTTTTT-AAT
1 TTTGTTTTTTCAAT
45353 TT
1 TT
45355 GTAACCAATA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 5 0.33
14 10 0.67
ACGTcount: A:0.14, C:0.03, G:0.07, T:0.76
Consensus pattern (14 bp):
TTTGTTTTTTCAAT
Found at i:46187 original size:17 final size:16
Alignment explanation
Indices: 46146--46179 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
46136 AGGATATATT
* *
46146 TAATAAAATTAAAAAA
1 TAATATAATAAAAAAA
46162 TAATATAATAAAAAAA
1 TAATATAATAAAAAAA
46178 TA
1 TA
46180 TTTATAATCT
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.74, C:0.00, G:0.00, T:0.26
Consensus pattern (16 bp):
TAATATAATAAAAAAA
Found at i:50188 original size:21 final size:21
Alignment explanation
Indices: 50160--50213 Score: 83
Period size: 21 Copynumber: 2.6 Consensus size: 21
50150 ACATGGTCTA
50160 GTAT-GATACATTTCTAGCAT
1 GTATCGATACATTTCTAGCAT
*
50180 GTATCGATACATTTCTGGCAT
1 GTATCGATACATTTCTAGCAT
*
50201 GTATCAATACATT
1 GTATCGATACATT
50214 CACTTATTGT
Statistics
Matches: 31, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
20 4 0.13
21 27 0.87
ACGTcount: A:0.30, C:0.17, G:0.15, T:0.39
Consensus pattern (21 bp):
GTATCGATACATTTCTAGCAT
Found at i:55183 original size:21 final size:21
Alignment explanation
Indices: 55157--55199 Score: 68
Period size: 21 Copynumber: 2.0 Consensus size: 21
55147 AAAATATAAA
* *
55157 ATTATTTTTATATTAATATTT
1 ATTATTTTTATAATAAAATTT
55178 ATTATTTTTATAATAAAATTT
1 ATTATTTTTATAATAAAATTT
55199 A
1 A
55200 AATAAAATAT
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
21 20 1.00
ACGTcount: A:0.40, C:0.00, G:0.00, T:0.60
Consensus pattern (21 bp):
ATTATTTTTATAATAAAATTT
Found at i:55723 original size:56 final size:57
Alignment explanation
Indices: 55638--55748 Score: 206
Period size: 56 Copynumber: 2.0 Consensus size: 57
55628 ATCCAGATCA
55638 AAAACACAAGAATGAAGTAGAAATAGGAAAGAGAT-ATAGGTTTAGTTGAAGGTATC
1 AAAACACAAGAATGAAGTAGAAATAGGAAAGAGATAATAGGTTTAGTTGAAGGTATC
*
55694 AAAACACAAGAATGAAGTAGAAATGGGAAAGAGATAATAGGTTTAGTTGAAGGTA
1 AAAACACAAGAATGAAGTAGAAATAGGAAAGAGATAATAGGTTTAGTTGAAGGTA
55749 GGATTAGAAT
Statistics
Matches: 53, Mismatches: 1, Indels: 1
0.96 0.02 0.02
Matches are distributed among these distances:
56 34 0.64
57 19 0.36
ACGTcount: A:0.49, C:0.05, G:0.26, T:0.21
Consensus pattern (57 bp):
AAAACACAAGAATGAAGTAGAAATAGGAAAGAGATAATAGGTTTAGTTGAAGGTATC
Found at i:56387 original size:19 final size:19
Alignment explanation
Indices: 56363--56402 Score: 71
Period size: 19 Copynumber: 2.1 Consensus size: 19
56353 TCACTAAAAG
56363 TTTCAAAATTGGATAAGAA
1 TTTCAAAATTGGATAAGAA
*
56382 TTTCAAAATTTGATAAGAA
1 TTTCAAAATTGGATAAGAA
56401 TT
1 TT
56403 CAACTTATTT
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
19 20 1.00
ACGTcount: A:0.45, C:0.05, G:0.12, T:0.38
Consensus pattern (19 bp):
TTTCAAAATTGGATAAGAA
Found at i:56610 original size:20 final size:19
Alignment explanation
Indices: 56585--56626 Score: 75
Period size: 20 Copynumber: 2.2 Consensus size: 19
56575 ATATATATTA
56585 TAAATAATTAAAGTCAAGGT
1 TAAATAATTAAAGTCAA-GT
56605 TAAATAATTAAAGTCAAGT
1 TAAATAATTAAAGTCAAGT
56624 TAA
1 TAA
56627 TATATATATT
Statistics
Matches: 22, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
19 5 0.23
20 17 0.77
ACGTcount: A:0.52, C:0.05, G:0.12, T:0.31
Consensus pattern (19 bp):
TAAATAATTAAAGTCAAGT
Found at i:60377 original size:23 final size:25
Alignment explanation
Indices: 60343--60412 Score: 83
Period size: 24 Copynumber: 2.8 Consensus size: 25
60333 AATAAAAATT
60343 AGCCACCAA-TTTTGACAAACAACA
1 AGCCACCAATTTTTGACAAACAACA
*
60367 AGCCA-CAATTTTTGACAAACAAAA
1 AGCCACCAATTTTTGACAAACAACA
60391 AGAAACCACC-ATTTTTGACAAA
1 AG---CCACCAATTTTTGACAAA
60413 TACAAAGTAA
Statistics
Matches: 40, Mismatches: 1, Indels: 7
0.83 0.02 0.15
Matches are distributed among these distances:
23 3 0.08
24 21 0.52
27 15 0.38
28 1 0.03
ACGTcount: A:0.47, C:0.24, G:0.09, T:0.20
Consensus pattern (25 bp):
AGCCACCAATTTTTGACAAACAACA
Found at i:60407 original size:27 final size:26
Alignment explanation
Indices: 60345--60441 Score: 108
Period size: 27 Copynumber: 3.7 Consensus size: 26
60335 TAAAAATTAG
* *
60345 CCACCAATTTTGACAAACAACAAG--
1 CCACCATTTTTGACAAACAAAAAGAA
*
60369 CCACAATTTTTGACAAACAAAAAGAAA
1 CCACCATTTTTGACAAACAAAAAG-AA
* *
60396 CCACCATTTTTGACAAATACAAAGTAA
1 CCACCATTTTTGACAAACAAAAAG-AA
*
60423 CCACCATTGTTGACAAACA
1 CCACCATTTTTGACAAACA
60442 CATGGTGGCT
Statistics
Matches: 61, Mismatches: 9, Indels: 3
0.84 0.12 0.04
Matches are distributed among these distances:
24 21 0.34
27 40 0.66
ACGTcount: A:0.46, C:0.25, G:0.08, T:0.21
Consensus pattern (26 bp):
CCACCATTTTTGACAAACAAAAAGAA
Found at i:60460 original size:24 final size:25
Alignment explanation
Indices: 60429--60486 Score: 91
Period size: 26 Copynumber: 2.3 Consensus size: 25
60419 GTAACCACCA
*
60429 TTGTTGACAAACAC-ATGGTGGCTT
1 TTGTTGACAAACACAAGGGTGGCTT
60453 TTGTTGACAAACACAAAGGGTGGCTT
1 TTGTTGACAAACAC-AAGGGTGGCTT
60479 TTGTTGAC
1 TTGTTGAC
60487 TAGCCACCCA
Statistics
Matches: 31, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
24 14 0.45
26 17 0.55
ACGTcount: A:0.26, C:0.16, G:0.26, T:0.33
Consensus pattern (25 bp):
TTGTTGACAAACACAAGGGTGGCTT
Done.