Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold1020
Parameters: 2 7 7 80 10 50 1000
Length:  40130

Tables:   1   

This is table  1  of  1  ( 40 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
615--660
4
11.8
4
90
4
58
67
0
0
32
0.91
2236--2276
19
2.0
21
90
9
68
31
0
7
60
1.24
2268--2301
18
1.9
17
88
5
50
38
0
2
58
1.13
2440--2474
2
17.5
2
100
0
70
51
0
48
0
1.00
3542--3580
20
1.9
21
84
5
53
58
2
0
38
1.12
4087--4128
22
1.9
22
90
9
68
47
2
0
50
1.14
4360--4392
15
2.1
16
88
11
50
60
0
0
39
0.97
4604--4647
14
3.1
14
80
6
61
43
2
2
52
1.26
5017--5053
4
9.8
4
91
5
51
0
16
0
83
0.64
9546--9586
13
3.2
12
87
12
64
43
4
0
51
1.23
9600--9666
33
2.0
33
91
0
107
47
0
0
52
1.00
9600--9653
18
3.2
18
71
10
51
42
0
0
57
0.98
9865--9896
3
11.0
3
93
6
57
31
0
0
68
0.90
10012--10041
2
15.0
2
92
0
51
50
3
0
46
1.18
10352--10402
19
2.8
18
77
22
61
54
0
3
41
1.19
10352--10402
17
2.7
19
80
20
63
54
0
3
41
1.19
10412--10491
24
3.6
22
77
17
69
41
6
1
51
1.35
11074--11107
2
17.0
2
87
0
50
44
0
5
50
1.26
12217--12255
19
2.1
19
90
9
62
46
0
0
53
1.00
12217--12256
20
2.1
19
90
4
62
47
0
0
52
1.00
13717--13765
21
2.5
19
81
12
55
48
2
0
48
1.12
13730--13780
21
2.5
20
81
9
50
60
3
0
35
1.15
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
14532--14575
23
1.9
23
81
9
54
29
0
9
61
1.27
14832--14898
18
3.7
18
82
11
75
76
0
22
1
0.87
17996--18028
11
2.8
12
90
9
50
78
0
6
15
0.93
19374--19413
12
3.4
12
83
16
57
67
2
0
30
1.04
19478--19517
18
2.2
18
86
8
55
40
5
2
52
1.37
19574--19637
25
2.6
25
87
5
85
39
12
0
48
1.41
20090--20116
14
1.9
14
100
0
54
51
0
7
40
1.30
20833--20877
22
2.0
22
87
8
65
24
11
8
55
1.63
23635--23670
17
2.1
17
89
0
54
83
0
16
0
0.65
24034--24068
2
17.5
2
93
0
61
45
0
2
51
1.16
30059--30139
36
2.3
35
81
10
85
71
9
13
4
1.28
30397--30422
13
2.0
13
100
0
52
84
15
0
0
0.62
31443--31551
26
3.8
31
84
8
92
23
29
15
31
1.95
31474--32073
27
22.0
27
90
2
907
22
33
14
29
1.94
31474--32073
136
4.4
135
90
2
907
22
33
14
29
1.94
32056--32559
32
15.8
32
92
2
795
30
33
19
16
1.94
33816--33851
12
2.8
12
91
8
54
86
0
13
0
0.58
34214--34248
2
17.5
2
93
0
61
45
0
2
51
1.16

Tables:   1

The End!