Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Scaffold1021
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 55978
ACGTcount: A:0.24, C:0.28, G:0.26, T:0.23
Found at i:5865 original size:418 final size:404
Alignment explanation
Indices: 5069--5869 Score: 1081
Period size: 418 Copynumber: 1.9 Consensus size: 404
5059 CACTCAGCCC
* *
5069 GGGCGCGATCCATGCCAGGCGCATGGAGCGCAATCCCCGACGGCCAACCGGCAGGACGAACCCAG
1 GGGCGCGAACCATGCCAGGCGCATGGAGCGCAATCCCCGACGGCCAACCGGCAGGACGAACCCAC
*
5134 CGTTGCCGATGCAAGGGCCGCGAGACTGCCCCTGCTCGAGGGGCAACGGCCAGGCCAAGCCCGCA
66 CGTTGCCGATGCAAGGGCCACGAGACTGCCCCTGCTCGAGGGGCAACGGCCAGGCCAAGCCCGCA
5199 CCTGCAGCATCTGCCTGCACCACAACCGGGACCATCCACTCGAATTCGAGAACTTGGCAGCATCA
131 CCTGCAGCATCTGCCTGCACCACAACCGGGACCATCCACTCGAATTCGAGAACTTGGCAGCATCA
* * *
5264 CCGCAGGAGCAAGCCTAACCTTCCGGCACGACCACGCCCCGTTACCCACACACGCGTGCCAAGCG
196 CCGCAGGAGCAAGCCTAACCTTCCGGCACGACCACGCCCCATTACCCACACACGCGGGCCAACCG
* * * * *
5329 ATCGCGCACGTAGCGACCGGGGGCCTCACCACGGATCACTTGGACCGCGTAGGGCCTTCATCACC
261 ATCGAGCACATAGCGACCGGGGACCTCACCACGGATCACTTGGACCGCGAAGGGCCTCCATCACC
*
5394 GCAGCTGGGCATCCGGTCACCGAAAACCACGATCGCAAGGCTCGCGCGACCTGGATTTTAATCGA
326 GCAGCTGGGCATCCGGTCACCGAAAACCACGATCGCAAGGCTCGCACGACCTGGATTTTAATCGA
5459 GAGGGACACTGCCG
391 GAGGGACACTGCCG
**
5473 GGGCGCGAACCATGCCAGGCGCATGGAGCGCAATCCCCGACAGG-CAACCGGCAGGACGTGCCCA
1 GGGCGCGAACCATGCCAGGCGCATGGAGCGCAATCCCCGAC-GGCCAACCGGCAGGACGAACCCA
* * *
5537 CCGTTGCCGATGCAAGGGCCACGAGACTGCCCTTGCTCGAGGGGC-ATGGCCAGGCCAAGCCCTC
65 CCGTTGCCGATGCAAGGGCCACGAGACTGCCCCTGCTCGAGGGGCAACGGCCAGGCCAAGCCCGC
* * * *
5601 ACCTGCAGCTTCTGCGC-GCGCCACAACCGGGACCCTCTACTCGATTAGGGGGCTTGGTCCTG-G
130 ACCTGCAGCATCTGC-CTGCACCACAACCGGGACCATCCACTCGA--A-------T--T-C-GAG
* * ** * * * * * *
5664 AGTCGTTGGCGGCATCGGCGCAGGTGCGAGCTTAACCTTCCGGCAGGACCACGCCTCATCTCCCC
181 A-AC-TTGGCAGCATCACCGCAGGAGCAAGCCTAACCTTCCGGCACGACCACGCCCCAT-TACCC
* * *
5729 ACACACGCGGGCCAACCGATCGAGCACATGGTGACCGGGGACCTCGCCACGGATCACTTGGACCG
243 ACACACGCGGGCCAACCGATCGAGCACATAGCGACCGGGGACCTCACCACGGATCACTTGGACCG
5794 CGAAGGGCCTCCATCACCGCAGCTGGGCATCCGGTCACCGAAAACCACGATCGCAAGGCAT-GCA
308 CGAAGGGCCTCCATCACCGCAGCTGGGCATCCGGTCACCGAAAACCACGATCGCAAGGC-TCGCA
*
5858 TGACCTGGATTT
372 CGACCTGGATTT
5870 CACACGAGGC
Statistics
Matches: 343, Mismatches: 35, Indels: 24
0.85 0.09 0.06
Matches are distributed among these distances:
403 55 0.16
404 101 0.29
405 3 0.01
412 1 0.00
414 1 0.00
415 3 0.01
416 2 0.01
417 45 0.13
418 131 0.38
419 1 0.00
ACGTcount: A:0.21, C:0.36, G:0.30, T:0.13
Consensus pattern (404 bp):
GGGCGCGAACCATGCCAGGCGCATGGAGCGCAATCCCCGACGGCCAACCGGCAGGACGAACCCAC
CGTTGCCGATGCAAGGGCCACGAGACTGCCCCTGCTCGAGGGGCAACGGCCAGGCCAAGCCCGCA
CCTGCAGCATCTGCCTGCACCACAACCGGGACCATCCACTCGAATTCGAGAACTTGGCAGCATCA
CCGCAGGAGCAAGCCTAACCTTCCGGCACGACCACGCCCCATTACCCACACACGCGGGCCAACCG
ATCGAGCACATAGCGACCGGGGACCTCACCACGGATCACTTGGACCGCGAAGGGCCTCCATCACC
GCAGCTGGGCATCCGGTCACCGAAAACCACGATCGCAAGGCTCGCACGACCTGGATTTTAATCGA
GAGGGACACTGCCG
Found at i:7240 original size:358 final size:358
Alignment explanation
Indices: 6583--7299 Score: 1434
Period size: 358 Copynumber: 2.0 Consensus size: 358
6573 GCGTGCCAAA
6583 CGATCGCGCACGTAGCGACCGGGGGCCTCACCACGGATCACTTGGACCGCGTAGGGTCTCCATCA
1 CGATCGCGCACGTAGCGACCGGGGGCCTCACCACGGATCACTTGGACCGCGTAGGGTCTCCATCA
6648 CCGCAGCTGGGCATCCGGTCACCGAAAACCACGATCGCAAGGCTCGCGCGACCTGGATTTTAATC
66 CCGCAGCTGGGCATCCGGTCACCGAAAACCACGATCGCAAGGCTCGCGCGACCTGGATTTTAATC
6713 GAGAGGGACACTGCCGGGGCGCGAACCATGCCAGGCGCATGGAGCGCAATCCCCGACAGGCAACC
131 GAGAGGGACACTGCCGGGGCGCGAACCATGCCAGGCGCATGGAGCGCAATCCCCGACAGGCAACC
6778 GGCAGGACGTGCCCACCGTTGCCGATGCAAGGGCCACGAGACTGCCCCTGCCCGAGGGGCATGGC
196 GGCAGGACGTGCCCACCGTTGCCGATGCAAGGGCCACGAGACTGCCCCTGCCCGAGGGGCATGGC
6843 CAGGCCAAGCCCTCACCTGCAGCTTCTGCCCACGCCACAACCGGGACAACCTACTCGAATTCGGG
261 CAGGCCAAGCCCTCACCTGCAGCTTCTGCCCACGCCACAACCGGGACAACCTACTCGAATTCGGG
6908 AACTTGGCAGAATCACCGCAGGTGCGAGCCTTG
326 AACTTGGCAGAATCACCGCAGGTGCGAGCCTTG
6941 CGATCGCGCACGTAGCGACCGGGGGCCTCACCACGGATCACTTGGACCGCGTAGGGTCTCCATCA
1 CGATCGCGCACGTAGCGACCGGGGGCCTCACCACGGATCACTTGGACCGCGTAGGGTCTCCATCA
7006 CCGCAGCTGGGCATCCGGTCACCGAAAACCACGATCGCAAGGCTCGCGCGACCTGGATTTTAATC
66 CCGCAGCTGGGCATCCGGTCACCGAAAACCACGATCGCAAGGCTCGCGCGACCTGGATTTTAATC
7071 GAGAGGGACACTGCCGGGGCGCGAACCATGCCAGGCGCATGGAGCGCAATCCCCGACAGGCAACC
131 GAGAGGGACACTGCCGGGGCGCGAACCATGCCAGGCGCATGGAGCGCAATCCCCGACAGGCAACC
7136 GGCAGGACGTGCCCACCGTTGCCGATGCAAGGGCCACGAGACTGCCCCTGCCCGAGGGGCATGGC
196 GGCAGGACGTGCCCACCGTTGCCGATGCAAGGGCCACGAGACTGCCCCTGCCCGAGGGGCATGGC
7201 CAGGCCAAGCCCTCACCTGCAGCTTCTGCCCACGCCACAACCGGGACAACCTACTCGAATTCGGG
261 CAGGCCAAGCCCTCACCTGCAGCTTCTGCCCACGCCACAACCGGGACAACCTACTCGAATTCGGG
7266 AACTTGGCAGAATCACCGCAGGTGCGAGCCTTG
326 AACTTGGCAGAATCACCGCAGGTGCGAGCCTTG
7299 C
1 C
7300 CTTCCGGCAG
Statistics
Matches: 359, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
358 359 1.00
ACGTcount: A:0.21, C:0.35, G:0.30, T:0.13
Consensus pattern (358 bp):
CGATCGCGCACGTAGCGACCGGGGGCCTCACCACGGATCACTTGGACCGCGTAGGGTCTCCATCA
CCGCAGCTGGGCATCCGGTCACCGAAAACCACGATCGCAAGGCTCGCGCGACCTGGATTTTAATC
GAGAGGGACACTGCCGGGGCGCGAACCATGCCAGGCGCATGGAGCGCAATCCCCGACAGGCAACC
GGCAGGACGTGCCCACCGTTGCCGATGCAAGGGCCACGAGACTGCCCCTGCCCGAGGGGCATGGC
CAGGCCAAGCCCTCACCTGCAGCTTCTGCCCACGCCACAACCGGGACAACCTACTCGAATTCGGG
AACTTGGCAGAATCACCGCAGGTGCGAGCCTTG
Found at i:8074 original size:403 final size:403
Alignment explanation
Indices: 6941--8221 Score: 2054
Period size: 402 Copynumber: 3.2 Consensus size: 403
6931 GCGAGCCTTG
6941 CGATCGCGCACGTAGCGACCGGGGGCCTCACCACGGATCACTTGGACCGCGTAGGGTCTCCATCA
1 CGATCGCGCACGTAGCGACCGGGGGCCTCACCACGGATCACTTGGACCGCGTAGGGTCTCCATCA
7006 CCGCAGCTGGGCATCCGGTCACCGAAAACCACGATCGCAAGGCTCGCGCGACCTGGATTTTAATC
66 CCGCAGCTGGGCATCCGGTCACCGAAAACCACGATCGCAAGGCTCGCGCGACCTGGATTTTAATC
7071 GAGAGGGACACTGCCGGGGCGCGAACCATGCCAGGCGCATGGAGCGCAATCCCCGACAGGCAACC
131 GAGAGGGACACTGCCGGGGCGCGAACCATGCCAGGCGCATGGAGCGCAATCCCCGACAGGCAACC
*
7136 GGCAGGACGTGCCCACCGTTGCCGATGCAAGGGCCACGAGACTGCCCCTGCCCGAGGGGCATGGC
196 GGCAGGACGTGCCCACCGTTGCCGATGCAAGGGCCACGAGACTGCCCCTGCTCGAGGGGCATGGC
* *
7201 CAGGCCAAGCCCTCACCTGCAGCTTCTGCCCACGCCACAACCGGGACAACCTACTCGAATTCGGG
261 CAGGCCAAGCCCTCACCTGCAGCTTCTGCCCACGCCACAACCGGGACTACCAACTCGAATTCGGG
7266 AACTTGGCAGAATCACCGCAGGTGCGAGCCTTGCCTTCCGGCA-GACCACGCCCCGTTACCCGCA
326 AACTTGGCAGAATCACCGCAGGTGCGAGCCTTGCCTTCCGGCACGACCACGCCCCGTTACCCGCA
7330 CACGCGTGCCAAA
391 CACGCGTGCCAAA
7343 CGATCGCGCACGTAGCGACCGGGGGCCTCACCACGGATCACTTGGACCGCGTAGGGTCTCCATCA
1 CGATCGCGCACGTAGCGACCGGGGGCCTCACCACGGATCACTTGGACCGCGTAGGGTCTCCATCA
7408 CCGCAGCTGGGCATCCGGTCACCGAAAACCACGATCGCAAGGCTCGCGCGACCTGGATTTTAATC
66 CCGCAGCTGGGCATCCGGTCACCGAAAACCACGATCGCAAGGCTCGCGCGACCTGGATTTTAATC
7473 GAGAGGGACACTGCCGGGGCGCGAACCATGCCAGGCGCATGGAGCGCAATCCCCGACAGGCAACC
131 GAGAGGGACACTGCCGGGGCGCGAACCATGCCAGGCGCATGGAGCGCAATCCCCGACAGGCAACC
7538 GGCAGGACGTGCCCACCGTTGCCGATGCAAGGGCCACGAGACTGCCCCTGCTCGAGGGGCATGGC
196 GGCAGGACGTGCCCACCGTTGCCGATGCAAGGGCCACGAGACTGCCCCTGCTCGAGGGGCATGGC
* *
7603 CAGGCCAAGCCCTCACCTGCAGCCTCTGCCCACGCCACAACCGGGACTACCGACTCGAATTCGGG
261 CAGGCCAAGCCCTCACCTGCAGCTTCTGCCCACGCCACAACCGGGACTACCAACTCGAATTCGGG
*
7668 AACTTGGCAGCATCACCGCAGGTGCGAGCCTTGCCTTCCGGCACGACCACGCCCCGTTACCCGCA
326 AACTTGGCAGAATCACCGCAGGTGCGAGCCTTGCCTTCCGGCACGACCACGCCCCGTTACCCGCA
*
7733 CACGCGTGCCAAC
391 CACGCGTGCCAAA
* * ** * *
7746 CGATCGCGCACGCAGAGACCGACGGCCTCACCACGGATCACTTGGACCGCGAAGGGTC-CCGTCA
1 CGATCGCGCACGTAGCGACCGGGGGCCTCACCACGGATCACTTGGACCGCGTAGGGTCTCCATCA
* * * *
7810 CCGCAGCTGGGCATCCGGCCACCGAAAACCACGATCGCAAGGCACGCGCGACCTGGATCTTAACC
66 CCGCAGCTGGGCATCCGGTCACCGAAAACCACGATCGCAAGGCTCGCGCGACCTGGATTTTAATC
* * * * *
7875 GAGAGGGACACTCTGCCGGGGCGCGATCAATGCCAGGCGCATCGAGCACAATCCCCGACAGACAA
131 GAGAGGGACA--CTGCCGGGGCGCGAACCATGCCAGGCGCATGGAGCGCAATCCCCGACAGGCAA
* * * *
7940 CCGGCGGGACGAGCCCACCGTTGCCGAAGCAAGGGCCGCGAGACTGCCCCTGCTC-ACGGGGCAT
194 CCGGCAGGACGTGCCCACCGTTGCCGATGCAAGGGCCACGAGACTGCCCCTGCTCGA-GGGGCAT
8004 GGCCAGGCCAAGCCC-CACCTGCAGCTTCTGCCCACGCCACAACCGGGACTACCAACTCGAATTC
258 GGCCAGGCCAAGCCCTCACCTGCAGCTTCTGCCCACGCCACAACCGGGACTACCAACTCGAATTC
* * * * *
8068 GGGAACTTGGCAGAATCAGCGCAGGTG-GAAG-CTTAACCCTACGGCACGACCACGCCCCTTGTG
323 GGGAACTTGGCAGAATCACCGCAGGTGCG-AGCCTT-GCCTTCCGGCACGACCACGCCCC--GTT
* * **
8131 CCCCACACACGCGTGCCATG
384 ACCCGCACACGCGTGCCAAA
* * ** * *
8151 CGATCG-GCAGCATACGGCGACCGGGGACCTTGCCACGGATCACCTGGACCGCGCAGGGTCTCCA
1 CGATCGCGCA-CGTA--GCGACCGGGGGCCTCACCACGGATCACTTGGACCGCGTAGGGTCTCCA
8215 TCACCGC
63 TCACCGC
8222 GACAAGGTTT
Statistics
Matches: 819, Mismatches: 48, Indels: 18
0.93 0.05 0.02
Matches are distributed among these distances:
402 443 0.54
403 181 0.22
404 124 0.15
405 26 0.03
407 36 0.04
408 9 0.01
ACGTcount: A:0.21, C:0.37, G:0.29, T:0.12
Consensus pattern (403 bp):
CGATCGCGCACGTAGCGACCGGGGGCCTCACCACGGATCACTTGGACCGCGTAGGGTCTCCATCA
CCGCAGCTGGGCATCCGGTCACCGAAAACCACGATCGCAAGGCTCGCGCGACCTGGATTTTAATC
GAGAGGGACACTGCCGGGGCGCGAACCATGCCAGGCGCATGGAGCGCAATCCCCGACAGGCAACC
GGCAGGACGTGCCCACCGTTGCCGATGCAAGGGCCACGAGACTGCCCCTGCTCGAGGGGCATGGC
CAGGCCAAGCCCTCACCTGCAGCTTCTGCCCACGCCACAACCGGGACTACCAACTCGAATTCGGG
AACTTGGCAGAATCACCGCAGGTGCGAGCCTTGCCTTCCGGCACGACCACGCCCCGTTACCCGCA
CACGCGTGCCAAA
Found at i:9384 original size:103 final size:101
Alignment explanation
Indices: 9232--9420 Score: 297
Period size: 103 Copynumber: 1.9 Consensus size: 101
9222 CGGCCCGGGG
*
9232 GCGCCCTTCCCGCCCCCGTGGTGGGGGCGGCCGGGGCGCACACCACGCGGAGCGCCGGTGCGCGC
1 GCGCCCTTCCCGCCCCCGGGGTGGGGGCGGCCGGGGCGCACACCACGCGGAGCGCCGGTGCGCGC
9297 CTCGCCCACCCTCGGGTGCGGCCAGGAGCACGGTGC
66 CTCGCCCACCCTCGGGTGCGGCCAGGAGCACGGTGC
* * * *
9333 GCGCCCTTCCCGCCCCCTGGGGTGGGGGGCGGTCGGGGCGCCCACCTCGCGGGGCGCCGGTGCGC
1 GCGCCCTTCCCGCCCCC-GGGGT-GGGGGCGGCCGGGGCGCACACCACGCGGAGCGCCGGTGCGC
* *
9398 GCCTCGCCCGCCCTCTGGTGCGG
64 GCCTCGCCCACCCTCGGGTGCGG
9421 GCGGCCGCGG
Statistics
Matches: 79, Mismatches: 7, Indels: 2
0.90 0.08 0.02
Matches are distributed among these distances:
101 17 0.22
102 4 0.05
103 58 0.73
ACGTcount: A:0.05, C:0.43, G:0.42, T:0.11
Consensus pattern (101 bp):
GCGCCCTTCCCGCCCCCGGGGTGGGGGCGGCCGGGGCGCACACCACGCGGAGCGCCGGTGCGCGC
CTCGCCCACCCTCGGGTGCGGCCAGGAGCACGGTGC
Found at i:9660 original size:64 final size:64
Alignment explanation
Indices: 9581--9702 Score: 199
Period size: 64 Copynumber: 1.9 Consensus size: 64
9571 CGTTTGGTTG
*
9581 GGGGGGAGGGACGGATGCTGGGGAGGGACTCGTTGCGCACGCTTGGCCCTCCGCATGTTAGAGA
1 GGGGGGAGGGACGGATGCTGGGGAGGGACTCGTTGCCCACGCTTGGCCCTCCGCATGTTAGAGA
* * * *
9645 GGGGGGAGGGCCGGATGGTTGGGAGGGACTCGTTGCCCACGCTTGGGCCTCCGCATGT
1 GGGGGGAGGGACGGATGCTGGGGAGGGACTCGTTGCCCACGCTTGGCCCTCCGCATGT
9703 GCTATCGGTG
Statistics
Matches: 53, Mismatches: 5, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
64 53 1.00
ACGTcount: A:0.13, C:0.23, G:0.46, T:0.18
Consensus pattern (64 bp):
GGGGGGAGGGACGGATGCTGGGGAGGGACTCGTTGCCCACGCTTGGCCCTCCGCATGTTAGAGA
Found at i:10210 original size:102 final size:102
Alignment explanation
Indices: 10041--10227 Score: 315
Period size: 102 Copynumber: 1.8 Consensus size: 102
10031 GGCCAGGTGC
* *
10041 ACGGTGCGCGCCCTGCCCGCCCCCTGGTGTGGGGGCGGTCGGGGCGCACACCATGCGGAGCACCG
1 ACGGTGCGCGCCCTGCCCGCCCCCTGGGGTGGGGGCGGGCGGGGCGCACACCATGCGGAGCACCG
10106 GTGCGCGCCTCGCCCACCCTCGGCTGCGGGCGGGAGA
66 GTGCGCGCCTCGCCCACCCTCGGCTGCGGGCGGGAGA
*
10143 ACGGTGCGCGCCCAT-CCCGCCCCCTGGGGTCGGGGGCGGGCGGGGCGCACGCCATGCGGAGCA-
1 ACGGTGCGCGCCC-TGCCCGCCCCCTGGGGT-GGGGGCGGGCGGGGCGCACACCATGCGGAGCAC
10206 CGGTGCGCGCCTCGCCCACCCT
64 CGGTGCGCGCCTCGCCCACCCT
10228 GGGGGGTGCG
Statistics
Matches: 80, Mismatches: 3, Indels: 4
0.92 0.03 0.05
Matches are distributed among these distances:
102 49 0.61
103 31 0.39
ACGTcount: A:0.09, C:0.41, G:0.41, T:0.10
Consensus pattern (102 bp):
ACGGTGCGCGCCCTGCCCGCCCCCTGGGGTGGGGGCGGGCGGGGCGCACACCATGCGGAGCACCG
GTGCGCGCCTCGCCCACCCTCGGCTGCGGGCGGGAGA
Found at i:10298 original size:64 final size:62
Alignment explanation
Indices: 10138--10313 Score: 168
Period size: 64 Copynumber: 2.8 Consensus size: 62
10128 GCTGCGGGCG
* ** *
10138 GGAGAACGGTGCGCGCCCATCCCGCCCCCTGGGGT-CGGGGGCGG-GCGGGGCGCACGCCATGC
1 GGAGCACGGTGCGCGCCC-TCCCGCCCCCTGGGGTGC-GGGGCGGCGCGGCACGCACGCCAGGC
*
10200 GGAGCACGGTGCGCG-CCTCGCC-CACCCTGGGGGGTGCGGGGCGGCCGCGGCACGCAC-CC-GG
1 GGAGCACGGTGCGCGCCCTC-CCGCCCCCT--GGGGTGCGGGGCGG-CGCGGCACGCACGCCAGG
10261 CC
62 -C
10263 AGGAGCACGGTGCGCGCCCTTCCCGCCCCCTGGGGTG-GGGGCGGTCGCGGC
1 -GGAGCACGGTGCGCGCCC-TCCCGCCCCCTGGGGTGCGGGGCGG-CGCGGC
10314 GCACACCGTG
Statistics
Matches: 96, Mismatches: 7, Indels: 21
0.77 0.06 0.17
Matches are distributed among these distances:
60 7 0.07
61 4 0.04
62 27 0.28
63 17 0.18
64 30 0.31
65 4 0.04
66 7 0.07
ACGTcount: A:0.08, C:0.39, G:0.45, T:0.09
Consensus pattern (62 bp):
GGAGCACGGTGCGCGCCCTCCCGCCCCCTGGGGTGCGGGGCGGCGCGGCACGCACGCCAGGC
Found at i:10391 original size:819 final size:811
Alignment explanation
Indices: 8570--10477 Score: 2339
Period size: 819 Copynumber: 2.3 Consensus size: 811
8560 GCGCGCGCAA
* * *** * *
8570 CGCCCGCCCTCGGGTGCGGACGGCCGCGGCACCCGCA-AAAGCCACGAGCATGGTGCGCGCCCTT
1 CGCCCACCCTCGGGTGCGGGCGGCCGCGGCA--CGCACCCGGCCAGGAGCACGGTGCGCGCCCTT
* * * * ** *
8634 CCCGCCCCC-AGGGTGGGAGCGGTCGGGGCGCGCACCATGCGGCGCAATGGGTGCGCACCCTTGC
64 CCCGCCCCCTGGGGTGGGGGCGGTCGGGGCGCACACC-TG-GGGGCACCGGGTGCGCACCGTTGC
* * *
8698 CGGGGTACCCAACCGACCGATGCAACGGTAAGGGACGAACACGTTTGGAGAGGGGAGGGACAGAT
127 CGGGGTACCCAACCGACCGACGCAACGCTAAGGGACGAACACGTTTGGAGAGGGGAGGGACGGAT
* * *
8763 GCCGGGGAGGGACTCGTTGCACACGCTCGGCCCTACGCATGCTTGGAGGGGGGAGGGACGGATGC
192 GCCGGGGAGGGACTCGTTGCGCACGCTTGGCCCTCCGCATGCTTGGAGGGGGGAGGGACGGATGC
*
8828 TTGGGGAGGGACTCGTTGCACACGCGTGGGCCTCCGCATGTGCTATCGGTGCCGAATTCGGGGTC
257 TTGGGGAGGGACTCGTTGCACACGCGTGGGCCTCCGCATGTGCTATCGGTGCCGAATTCGCGGTC
*
8893 GTCGGCACCGTCGCCGGAGCACCGCCGGAGAACCTGACCGGCGGTGGGGGGGAGCCCCGGCGAAT
322 CTCGGCACCGT----------CCGCCGGAGAACCTGACCGGCGGTGGGGGGGAGCCCCGGCGAA-
* *
8958 GGGGGAGGGGTGTGGGCGACGGCACGCGATGGGTGCAGGGTGGCAGCCCCGCAGGGCACCCCACT
376 -GGGGAGCGGTGT----G--GGCACGCGACGGGTGCAGGGTGGCAGCCCCGCAGGGCACCCCACT
* * * **
9023 GCCCCCCCCCTTGGTTGCTCAAGTATCACACCCCCTATAGAGCTTAAGATGGATTTCTTTGTTGT
434 G-CCCCCCCCTAGGTTGCTCAAGTATCACACCCCCTATAGAGCTTAAGAGGGATTTCTATGCCGT
* * * *
9088 CACCAGTGGAGGTGCCCACGTTCGAAACAGGGACAGTTTTTCTCCCGCACCGAGGGTGGGCCGAG
498 CACCAGCGGAAGTGACCACGTTCGAAACAGGGACAGTTTTTCTCCCGCACCGAGGGTGGGCCAAG
* * * *
9153 ACCCCACCACCTCGGGCACCCGGTGCGCGCCACGCCCACCCTCGGGTGCGCGGGGCCGAGGCTCG
563 ACCCCACCACCTCGGGCACCCGGCGCGCGCCACGCCCACCCTCGGGCGCGCGGGGCCGAGGCACA
* *
9218 CACCCGGCCCGGGGGCGCCCTTCCCGCCCCCGTGGTGGGGGCGGCCGGGGCGCACACCACGCGGA
628 CACCCGGCCCGGGCGCGCCCTGCCCGCCCCCGTGGTGGGGGCGGCCGGGGCGCACACCACGCGGA
* * * *
9283 GCGCCGGTGCGCGCCTCGCCCACCCTCGGGTGCGGCCAGGAGCACGGTGCGCGCCCTTCCCGCCC
693 GCACCGGTGCGCGCCTCGCCCACCCTCGGCTGCGGCCAGGAGAACGGTGCGCGCCCATCCCGCCC
* * * * *
9348 CCTGGGGTGGGGGGCGGTCGGGGCGCCCACCTCGCGGGGCGCCGGTGCGCGCCT
758 CCTGGGGTCGGGGGCGGGCGGGGCGCACACCTCGCGGAGCGACGGTGCGCGCCT
* * * * * *
9402 CGCCCGCCCTCTGGTGCGGGCGGCCGCGGCACGGACCCGGGCGGGAGCACGGGGCGCGCCCTTCC
1 CGCCCACCCTCGGGTGCGGGCGGCCGCGGCACGCACCCGGCCAGGAGCACGGTGCGCGCCCTTCC
*
9467 CGCCCCCTGGGGTGGGGGCGGTCGGGGCGCACACCTCGCGGGGCACCGGGTGCGCACCGTTGTCG
66 CGCCCCCTGGGGTGGGGGCGGTCGGGGCGCACACCT-G-GGGGCACCGGGTGCGCACCGTTGCCG
* *
9532 GGGTACCCAACCGACCGACGCAACGCTAAGGGACGAACACGTTTGGTTGGGGGGGAGGGACGGAT
129 GGGTACCCAACCGACCGACGCAACGCTAAGGGACGAACACGTTTGG--AGAGGGGAGGGACGGAT
* *
9597 GCTGGGGAGGGACTCGTTGCGCACGCTTGGCCCTCCGCATG-TTAGAGAGGGGGGAGGGCCGGAT
192 GCCGGGGAGGGACTCGTTGCGCACGCTTGGCCCTCCGCATGCTT-G-GAGGGGGGAGGGACGGAT
* * *
9661 GGTT-GGGAGGGACTCGTTGCCCACGCTTGGGCCTCCGCATGTGCTATCGGTGCCGAATTCGCGG
255 GCTTGGGGAGGGACTCGTTGCACACGCGTGGGCCTCCGCATGTGCTATCGGTGCCGAATTCGCGG
*
9725 TCCTCGGCACCGT-CGCCGGAGAACCTGACCGGCGGT-GGGGGGAGCCCCGGCG-A-GTG-GCGG
320 TCCTCGGCACCGTCCGCCGGAGAACCTGACCGGCGGTGGGGGGGAGCCCCGGCGAAGGGGAGCGG
* * *
9785 -GT-GGCACGCGACGGGTGCTGGGTGGCAGCCCCGCGGGGCACCCCCAGTG-CCCCCCCTAGGTT
385 TGTGGGCACGCGACGGGTGCAGGGTGGCAGCCCCGCAGGGCA-CCCCACTGCCCCCCCCTAGGTT
*
9847 GCTCAAGTATCACACCCCCTATAGAGCTTAAG-GGGCATTTCATAT-CCGTTACCAGCGGACAG-
449 GCTCAAGTATCACACCCCCTATAGAGCTTAAGAGGG-ATTTC-TATGCCGTCACCAGCGGA-AGT
* * * *
9909 GACCACGTTCGAAACAGGGTCGGTTTTTCTGCCGCACCTAGGGT-GGCGCAAG-CCCGCACCACC
511 GACCACGTTCGAAACAGGGACAGTTTTTCTCCCGCACCGAGGGTGGGC-CAAGACCC-CACCACC
* * *
9972 TCGGGCAGCCGGCGCGCGCCTCGCCCACCCTCGGGCGCG-GGCGGCCGAGGCACACCCCCGGCCA
574 TCGGGCACCCGGCGCGCGCCACGCCCACCCTCGGGCGCGCGG-GGCCGAGGCACACACCCGG-C-
* *
10036 GGTGCACGGTGCGCGCCCTGCCCGCCCCC-TGGTGTGGGGGCGGTCGGGGCGCACACCATGCGGA
636 ----C-CGG-GCGCGCCCTGCCCGCCCCCGT-G-GTGGGGGCGGCCGGGGCGCACACCACGCGGA
* *
10100 GCACCGGTGCGCGCCTCGCCCACCCTCGGCTGCGGGCGGGAGAACGGTGCGCGCCCATCCCGCCC
693 GCACCGGTGCGCGCCTCGCCCACCCTCGGCTGCGGCCAGGAGAACGGTGCGCGCCCATCCCGCCC
*
10165 CCTGGGGTCGGGGGCGGGCGGGGCGCACGCCAT-GCGGAGC-ACGGTGCGCGCCT
758 CCTGGGGTCGGGGGCGGGCGGGGCGCACACC-TCGCGGAGCGACGGTGCGCGCCT
*
10218 CGCCCACCCTGGGGGGTGCGGGGCGGCCGCGGCACGCACCCGGCCAGGAGCACGGTGCGCGCCCT
1 CGCCCACCCT--CGGGTGC-GGGCGGCCGCGGCACGCACCCGGCCAGGAGCACGGTGCGCGCCCT
* *
10283 TCCCGCCCCCTGGGGTGGGGGCGGTCGCGGCGCACACCGTGGGGAGCACCGGGTGCGCACAGTTG
63 TCCCGCCCCCTGGGGTGGGGGCGGTCGGGGCGCACACC-TGGGG-GCACCGGGTGCGCACCGTTG
* * * *
10348 CCGGGGTACCCAACCGACCGGCGCAACGCTAAGGGAAGAACACGTTCGGAGCGGGGAGGGACGGA
126 CCGGGGTACCCAACCGACCGACGCAACGCTAAGGGACGAACACGTTTGGAGAGGGGAGGGACGGA
* ** * * *
10413 TGGCCGGGGGAGGGACTCGTTGCGCATGCGTTGG-CCTCCGCCCGTTTGGTGTGGGGAGGGACGG
191 T-GCC-GGGGAGGGACTCGTTGCGCACGC-TTGGCCCTCCGCATGCTTGGAGGGGGGAGGGACGG
10477 A
253 A
10478 CGGCCTATGT
Statistics
Matches: 943, Mismatches: 99, Indels: 82
0.84 0.09 0.07
Matches are distributed among these distances:
807 10 0.01
808 159 0.17
809 39 0.04
810 7 0.01
814 1 0.00
815 4 0.00
816 41 0.04
817 139 0.15
818 27 0.03
819 174 0.18
820 7 0.01
821 1 0.00
822 16 0.02
823 23 0.02
830 3 0.00
831 29 0.03
832 120 0.13
833 2 0.00
834 121 0.13
835 20 0.02
ACGTcount: A:0.13, C:0.34, G:0.40, T:0.13
Consensus pattern (811 bp):
CGCCCACCCTCGGGTGCGGGCGGCCGCGGCACGCACCCGGCCAGGAGCACGGTGCGCGCCCTTCC
CGCCCCCTGGGGTGGGGGCGGTCGGGGCGCACACCTGGGGGCACCGGGTGCGCACCGTTGCCGGG
GTACCCAACCGACCGACGCAACGCTAAGGGACGAACACGTTTGGAGAGGGGAGGGACGGATGCCG
GGGAGGGACTCGTTGCGCACGCTTGGCCCTCCGCATGCTTGGAGGGGGGAGGGACGGATGCTTGG
GGAGGGACTCGTTGCACACGCGTGGGCCTCCGCATGTGCTATCGGTGCCGAATTCGCGGTCCTCG
GCACCGTCCGCCGGAGAACCTGACCGGCGGTGGGGGGGAGCCCCGGCGAAGGGGAGCGGTGTGGG
CACGCGACGGGTGCAGGGTGGCAGCCCCGCAGGGCACCCCACTGCCCCCCCCTAGGTTGCTCAAG
TATCACACCCCCTATAGAGCTTAAGAGGGATTTCTATGCCGTCACCAGCGGAAGTGACCACGTTC
GAAACAGGGACAGTTTTTCTCCCGCACCGAGGGTGGGCCAAGACCCCACCACCTCGGGCACCCGG
CGCGCGCCACGCCCACCCTCGGGCGCGCGGGGCCGAGGCACACACCCGGCCCGGGCGCGCCCTGC
CCGCCCCCGTGGTGGGGGCGGCCGGGGCGCACACCACGCGGAGCACCGGTGCGCGCCTCGCCCAC
CCTCGGCTGCGGCCAGGAGAACGGTGCGCGCCCATCCCGCCCCCTGGGGTCGGGGGCGGGCGGGG
CGCACACCTCGCGGAGCGACGGTGCGCGCCT
Found at i:18855 original size:418 final size:404
Alignment explanation
Indices: 18059--18859 Score: 1081
Period size: 418 Copynumber: 1.9 Consensus size: 404
18049 CACTCAGCCC
* *
18059 GGGCGCGATCCATGCCAGGCGCATGGAGCGCAATCCCCGACGGCCAACCGGCAGGACGAACCCAG
1 GGGCGCGAACCATGCCAGGCGCATGGAGCGCAATCCCCGACGGCCAACCGGCAGGACGAACCCAC
*
18124 CGTTGCCGATGCAAGGGCCGCGAGACTGCCCCTGCTCGAGGGGCAACGGCCAGGCCAAGCCCGCA
66 CGTTGCCGATGCAAGGGCCACGAGACTGCCCCTGCTCGAGGGGCAACGGCCAGGCCAAGCCCGCA
18189 CCTGCAGCATCTGCCTGCACCACAACCGGGACCATCCACTCGAATTCGAGAACTTGGCAGCATCA
131 CCTGCAGCATCTGCCTGCACCACAACCGGGACCATCCACTCGAATTCGAGAACTTGGCAGCATCA
* * *
18254 CCGCAGGAGCAAGCCTAACCTTCCGGCACGACCACGCCCCGTTACCCACACACGCGTGCCAAGCG
196 CCGCAGGAGCAAGCCTAACCTTCCGGCACGACCACGCCCCATTACCCACACACGCGGGCCAACCG
* * * * *
18319 ATCGCGCACGTAGCGACCGGGGGCCTCACCACGGATCACTTGGACCGCGTAGGGCCTTCATCACC
261 ATCGAGCACATAGCGACCGGGGACCTCACCACGGATCACTTGGACCGCGAAGGGCCTCCATCACC
*
18384 GCAGCTGGGCATCCGGTCACCGAAAACCACGATCGCAAGGCTCGCGCGACCTGGATTTTAATCGA
326 GCAGCTGGGCATCCGGTCACCGAAAACCACGATCGCAAGGCTCGCACGACCTGGATTTTAATCGA
18449 GAGGGACACTGCCG
391 GAGGGACACTGCCG
**
18463 GGGCGCGAACCATGCCAGGCGCATGGAGCGCAATCCCCGACAGG-CAACCGGCAGGACGTGCCCA
1 GGGCGCGAACCATGCCAGGCGCATGGAGCGCAATCCCCGAC-GGCCAACCGGCAGGACGAACCCA
* * *
18527 CCGTTGCCGATGCAAGGGCCACGAGACTGCCCTTGCTCGAGGGGC-ATGGCCAGGCCAAGCCCTC
65 CCGTTGCCGATGCAAGGGCCACGAGACTGCCCCTGCTCGAGGGGCAACGGCCAGGCCAAGCCCGC
* * * *
18591 ACCTGCAGCTTCTGCGC-GCGCCACAACCGGGACCCTCTACTCGATTAGGGGGCTTGGTCCTG-G
130 ACCTGCAGCATCTGC-CTGCACCACAACCGGGACCATCCACTCGA--A-------T--T-C-GAG
* * ** * * * * * *
18654 AGTCGTTGGCGGCATCGGCGCAGGTGCGAGCTTAACCTTCCGGCAGGACCACGCCTCATCTCCCC
181 A-AC-TTGGCAGCATCACCGCAGGAGCAAGCCTAACCTTCCGGCACGACCACGCCCCAT-TACCC
* * *
18719 ACACACGCGGGCCAACCGATCGAGCACATGGTGACCGGGGACCTCGCCACGGATCACTTGGACCG
243 ACACACGCGGGCCAACCGATCGAGCACATAGCGACCGGGGACCTCACCACGGATCACTTGGACCG
18784 CGAAGGGCCTCCATCACCGCAGCTGGGCATCCGGTCACCGAAAACCACGATCGCAAGGCAT-GCA
308 CGAAGGGCCTCCATCACCGCAGCTGGGCATCCGGTCACCGAAAACCACGATCGCAAGGC-TCGCA
*
18848 TGACCTGGATTT
372 CGACCTGGATTT
18860 CACACGAGGC
Statistics
Matches: 343, Mismatches: 35, Indels: 24
0.85 0.09 0.06
Matches are distributed among these distances:
403 55 0.16
404 101 0.29
405 3 0.01
412 1 0.00
414 1 0.00
415 3 0.01
416 2 0.01
417 45 0.13
418 131 0.38
419 1 0.00
ACGTcount: A:0.21, C:0.36, G:0.30, T:0.13
Consensus pattern (404 bp):
GGGCGCGAACCATGCCAGGCGCATGGAGCGCAATCCCCGACGGCCAACCGGCAGGACGAACCCAC
CGTTGCCGATGCAAGGGCCACGAGACTGCCCCTGCTCGAGGGGCAACGGCCAGGCCAAGCCCGCA
CCTGCAGCATCTGCCTGCACCACAACCGGGACCATCCACTCGAATTCGAGAACTTGGCAGCATCA
CCGCAGGAGCAAGCCTAACCTTCCGGCACGACCACGCCCCATTACCCACACACGCGGGCCAACCG
ATCGAGCACATAGCGACCGGGGACCTCACCACGGATCACTTGGACCGCGAAGGGCCTCCATCACC
GCAGCTGGGCATCCGGTCACCGAAAACCACGATCGCAAGGCTCGCACGACCTGGATTTTAATCGA
GAGGGACACTGCCG
Found at i:20232 original size:358 final size:358
Alignment explanation
Indices: 19575--20291 Score: 1434
Period size: 358 Copynumber: 2.0 Consensus size: 358
19565 GCGTGCCAAA
19575 CGATCGCGCACGTAGCGACCGGGGGCCTCACCACGGATCACTTGGACCGCGTAGGGTCTCCATCA
1 CGATCGCGCACGTAGCGACCGGGGGCCTCACCACGGATCACTTGGACCGCGTAGGGTCTCCATCA
19640 CCGCAGCTGGGCATCCGGTCACCGAAAACCACGATCGCAAGGCTCGCGCGACCTGGATTTTAATC
66 CCGCAGCTGGGCATCCGGTCACCGAAAACCACGATCGCAAGGCTCGCGCGACCTGGATTTTAATC
19705 GAGAGGGACACTGCCGGGGCGCGAACCATGCCAGGCGCATGGAGCGCAATCCCCGACAGGCAACC
131 GAGAGGGACACTGCCGGGGCGCGAACCATGCCAGGCGCATGGAGCGCAATCCCCGACAGGCAACC
19770 GGCAGGACGTGCCCACCGTTGCCGATGCAAGGGCCACGAGACTGCCCCTGCCCGAGGGGCATGGC
196 GGCAGGACGTGCCCACCGTTGCCGATGCAAGGGCCACGAGACTGCCCCTGCCCGAGGGGCATGGC
19835 CAGGCCAAGCCCTCACCTGCAGCTTCTGCCCACGCCACAACCGGGACAACCTACTCGAATTCGGG
261 CAGGCCAAGCCCTCACCTGCAGCTTCTGCCCACGCCACAACCGGGACAACCTACTCGAATTCGGG
19900 AACTTGGCAGAATCACCGCAGGTGCGAGCCTTG
326 AACTTGGCAGAATCACCGCAGGTGCGAGCCTTG
19933 CGATCGCGCACGTAGCGACCGGGGGCCTCACCACGGATCACTTGGACCGCGTAGGGTCTCCATCA
1 CGATCGCGCACGTAGCGACCGGGGGCCTCACCACGGATCACTTGGACCGCGTAGGGTCTCCATCA
19998 CCGCAGCTGGGCATCCGGTCACCGAAAACCACGATCGCAAGGCTCGCGCGACCTGGATTTTAATC
66 CCGCAGCTGGGCATCCGGTCACCGAAAACCACGATCGCAAGGCTCGCGCGACCTGGATTTTAATC
20063 GAGAGGGACACTGCCGGGGCGCGAACCATGCCAGGCGCATGGAGCGCAATCCCCGACAGGCAACC
131 GAGAGGGACACTGCCGGGGCGCGAACCATGCCAGGCGCATGGAGCGCAATCCCCGACAGGCAACC
20128 GGCAGGACGTGCCCACCGTTGCCGATGCAAGGGCCACGAGACTGCCCCTGCCCGAGGGGCATGGC
196 GGCAGGACGTGCCCACCGTTGCCGATGCAAGGGCCACGAGACTGCCCCTGCCCGAGGGGCATGGC
20193 CAGGCCAAGCCCTCACCTGCAGCTTCTGCCCACGCCACAACCGGGACAACCTACTCGAATTCGGG
261 CAGGCCAAGCCCTCACCTGCAGCTTCTGCCCACGCCACAACCGGGACAACCTACTCGAATTCGGG
20258 AACTTGGCAGAATCACCGCAGGTGCGAGCCTTG
326 AACTTGGCAGAATCACCGCAGGTGCGAGCCTTG
20291 C
1 C
20292 CTTCCGGCAG
Statistics
Matches: 359, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
358 359 1.00
ACGTcount: A:0.21, C:0.35, G:0.30, T:0.13
Consensus pattern (358 bp):
CGATCGCGCACGTAGCGACCGGGGGCCTCACCACGGATCACTTGGACCGCGTAGGGTCTCCATCA
CCGCAGCTGGGCATCCGGTCACCGAAAACCACGATCGCAAGGCTCGCGCGACCTGGATTTTAATC
GAGAGGGACACTGCCGGGGCGCGAACCATGCCAGGCGCATGGAGCGCAATCCCCGACAGGCAACC
GGCAGGACGTGCCCACCGTTGCCGATGCAAGGGCCACGAGACTGCCCCTGCCCGAGGGGCATGGC
CAGGCCAAGCCCTCACCTGCAGCTTCTGCCCACGCCACAACCGGGACAACCTACTCGAATTCGGG
AACTTGGCAGAATCACCGCAGGTGCGAGCCTTG
Found at i:21066 original size:403 final size:403
Alignment explanation
Indices: 19933--21213 Score: 2054
Period size: 402 Copynumber: 3.2 Consensus size: 403
19923 GCGAGCCTTG
19933 CGATCGCGCACGTAGCGACCGGGGGCCTCACCACGGATCACTTGGACCGCGTAGGGTCTCCATCA
1 CGATCGCGCACGTAGCGACCGGGGGCCTCACCACGGATCACTTGGACCGCGTAGGGTCTCCATCA
19998 CCGCAGCTGGGCATCCGGTCACCGAAAACCACGATCGCAAGGCTCGCGCGACCTGGATTTTAATC
66 CCGCAGCTGGGCATCCGGTCACCGAAAACCACGATCGCAAGGCTCGCGCGACCTGGATTTTAATC
20063 GAGAGGGACACTGCCGGGGCGCGAACCATGCCAGGCGCATGGAGCGCAATCCCCGACAGGCAACC
131 GAGAGGGACACTGCCGGGGCGCGAACCATGCCAGGCGCATGGAGCGCAATCCCCGACAGGCAACC
*
20128 GGCAGGACGTGCCCACCGTTGCCGATGCAAGGGCCACGAGACTGCCCCTGCCCGAGGGGCATGGC
196 GGCAGGACGTGCCCACCGTTGCCGATGCAAGGGCCACGAGACTGCCCCTGCTCGAGGGGCATGGC
* *
20193 CAGGCCAAGCCCTCACCTGCAGCTTCTGCCCACGCCACAACCGGGACAACCTACTCGAATTCGGG
261 CAGGCCAAGCCCTCACCTGCAGCTTCTGCCCACGCCACAACCGGGACTACCAACTCGAATTCGGG
20258 AACTTGGCAGAATCACCGCAGGTGCGAGCCTTGCCTTCCGGCA-GACCACGCCCCGTTACCCGCA
326 AACTTGGCAGAATCACCGCAGGTGCGAGCCTTGCCTTCCGGCACGACCACGCCCCGTTACCCGCA
20322 CACGCGTGCCAAA
391 CACGCGTGCCAAA
20335 CGATCGCGCACGTAGCGACCGGGGGCCTCACCACGGATCACTTGGACCGCGTAGGGTCTCCATCA
1 CGATCGCGCACGTAGCGACCGGGGGCCTCACCACGGATCACTTGGACCGCGTAGGGTCTCCATCA
20400 CCGCAGCTGGGCATCCGGTCACCGAAAACCACGATCGCAAGGCTCGCGCGACCTGGATTTTAATC
66 CCGCAGCTGGGCATCCGGTCACCGAAAACCACGATCGCAAGGCTCGCGCGACCTGGATTTTAATC
20465 GAGAGGGACACTGCCGGGGCGCGAACCATGCCAGGCGCATGGAGCGCAATCCCCGACAGGCAACC
131 GAGAGGGACACTGCCGGGGCGCGAACCATGCCAGGCGCATGGAGCGCAATCCCCGACAGGCAACC
20530 GGCAGGACGTGCCCACCGTTGCCGATGCAAGGGCCACGAGACTGCCCCTGCTCGAGGGGCATGGC
196 GGCAGGACGTGCCCACCGTTGCCGATGCAAGGGCCACGAGACTGCCCCTGCTCGAGGGGCATGGC
* *
20595 CAGGCCAAGCCCTCACCTGCAGCCTCTGCCCACGCCACAACCGGGACTACCGACTCGAATTCGGG
261 CAGGCCAAGCCCTCACCTGCAGCTTCTGCCCACGCCACAACCGGGACTACCAACTCGAATTCGGG
*
20660 AACTTGGCAGCATCACCGCAGGTGCGAGCCTTGCCTTCCGGCACGACCACGCCCCGTTACCCGCA
326 AACTTGGCAGAATCACCGCAGGTGCGAGCCTTGCCTTCCGGCACGACCACGCCCCGTTACCCGCA
*
20725 CACGCGTGCCAAC
391 CACGCGTGCCAAA
* * ** * *
20738 CGATCGCGCACGCAGAGACCGACGGCCTCACCACGGATCACTTGGACCGCGAAGGGTC-CCGTCA
1 CGATCGCGCACGTAGCGACCGGGGGCCTCACCACGGATCACTTGGACCGCGTAGGGTCTCCATCA
* * * *
20802 CCGCAGCTGGGCATCCGGCCACCGAAAACCACGATCGCAAGGCACGCGCGACCTGGATCTTAACC
66 CCGCAGCTGGGCATCCGGTCACCGAAAACCACGATCGCAAGGCTCGCGCGACCTGGATTTTAATC
* * * * *
20867 GAGAGGGACACTCTGCCGGGGCGCGATCAATGCCAGGCGCATCGAGCACAATCCCCGACAGACAA
131 GAGAGGGACA--CTGCCGGGGCGCGAACCATGCCAGGCGCATGGAGCGCAATCCCCGACAGGCAA
* * * *
20932 CCGGCGGGACGAGCCCACCGTTGCCGAAGCAAGGGCCGCGAGACTGCCCCTGCTC-ACGGGGCAT
194 CCGGCAGGACGTGCCCACCGTTGCCGATGCAAGGGCCACGAGACTGCCCCTGCTCGA-GGGGCAT
20996 GGCCAGGCCAAGCCC-CACCTGCAGCTTCTGCCCACGCCACAACCGGGACTACCAACTCGAATTC
258 GGCCAGGCCAAGCCCTCACCTGCAGCTTCTGCCCACGCCACAACCGGGACTACCAACTCGAATTC
* * * * *
21060 GGGAACTTGGCAGAATCAGCGCAGGTG-GAAG-CTTAACCCTACGGCACGACCACGCCCCTTGTG
323 GGGAACTTGGCAGAATCACCGCAGGTGCG-AGCCTT-GCCTTCCGGCACGACCACGCCCC--GTT
* * **
21123 CCCCACACACGCGTGCCATG
384 ACCCGCACACGCGTGCCAAA
* * ** * *
21143 CGATCG-GCAGCATACGGCGACCGGGGACCTTGCCACGGATCACCTGGACCGCGCAGGGTCTCCA
1 CGATCGCGCA-CGTA--GCGACCGGGGGCCTCACCACGGATCACTTGGACCGCGTAGGGTCTCCA
21207 TCACCGC
63 TCACCGC
21214 GACAAGGTTT
Statistics
Matches: 819, Mismatches: 48, Indels: 18
0.93 0.05 0.02
Matches are distributed among these distances:
402 443 0.54
403 181 0.22
404 124 0.15
405 26 0.03
407 36 0.04
408 9 0.01
ACGTcount: A:0.21, C:0.37, G:0.29, T:0.12
Consensus pattern (403 bp):
CGATCGCGCACGTAGCGACCGGGGGCCTCACCACGGATCACTTGGACCGCGTAGGGTCTCCATCA
CCGCAGCTGGGCATCCGGTCACCGAAAACCACGATCGCAAGGCTCGCGCGACCTGGATTTTAATC
GAGAGGGACACTGCCGGGGCGCGAACCATGCCAGGCGCATGGAGCGCAATCCCCGACAGGCAACC
GGCAGGACGTGCCCACCGTTGCCGATGCAAGGGCCACGAGACTGCCCCTGCTCGAGGGGCATGGC
CAGGCCAAGCCCTCACCTGCAGCTTCTGCCCACGCCACAACCGGGACTACCAACTCGAATTCGGG
AACTTGGCAGAATCACCGCAGGTGCGAGCCTTGCCTTCCGGCACGACCACGCCCCGTTACCCGCA
CACGCGTGCCAAA
Found at i:22375 original size:103 final size:101
Alignment explanation
Indices: 22223--22411 Score: 297
Period size: 103 Copynumber: 1.9 Consensus size: 101
22213 CGGCCCGGGG
*
22223 GCGCCCTTCCCGCCCCCGTGGTGGGGGCGGCCGGGGCGCACACCACGCGGAGCGCCGGTGCGCGC
1 GCGCCCTTCCCGCCCCCGGGGTGGGGGCGGCCGGGGCGCACACCACGCGGAGCGCCGGTGCGCGC
22288 CTCGCCCACCCTCGGGTGCGGCCAGGAGCACGGTGC
66 CTCGCCCACCCTCGGGTGCGGCCAGGAGCACGGTGC
* * * *
22324 GCGCCCTTCCCGCCCCCTGGGGTGGGGGGCGGTCGGGGCGCCCACCTCGCGGGGCGCCGGTGCGC
1 GCGCCCTTCCCGCCCCC-GGGGT-GGGGGCGGCCGGGGCGCACACCACGCGGAGCGCCGGTGCGC
* *
22389 GCCTCGCCCGCCCTCTGGTGCGG
64 GCCTCGCCCACCCTCGGGTGCGG
22412 GCGGCCGCGG
Statistics
Matches: 79, Mismatches: 7, Indels: 2
0.90 0.08 0.02
Matches are distributed among these distances:
101 17 0.22
102 4 0.05
103 58 0.73
ACGTcount: A:0.05, C:0.43, G:0.42, T:0.11
Consensus pattern (101 bp):
GCGCCCTTCCCGCCCCCGGGGTGGGGGCGGCCGGGGCGCACACCACGCGGAGCGCCGGTGCGCGC
CTCGCCCACCCTCGGGTGCGGCCAGGAGCACGGTGC
Found at i:22651 original size:64 final size:64
Alignment explanation
Indices: 22572--22693 Score: 199
Period size: 64 Copynumber: 1.9 Consensus size: 64
22562 CGTTTGGTTG
*
22572 GGGGGGAGGGACGGATGCTGGGGAGGGACTCGTTGCGCACGCTTGGCCCTCCGCATGTTAGAGA
1 GGGGGGAGGGACGGATGCTGGGGAGGGACTCGTTGCCCACGCTTGGCCCTCCGCATGTTAGAGA
* * * *
22636 GGGGGGAGGGCCGGATGGTTGGGAGGGACTCGTTGCCCACGCTTGGGCCTCCGCATGT
1 GGGGGGAGGGACGGATGCTGGGGAGGGACTCGTTGCCCACGCTTGGCCCTCCGCATGT
22694 GCTATCGGTG
Statistics
Matches: 53, Mismatches: 5, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
64 53 1.00
ACGTcount: A:0.13, C:0.23, G:0.46, T:0.18
Consensus pattern (64 bp):
GGGGGGAGGGACGGATGCTGGGGAGGGACTCGTTGCCCACGCTTGGCCCTCCGCATGTTAGAGA
Found at i:23201 original size:102 final size:102
Alignment explanation
Indices: 23032--23218 Score: 315
Period size: 102 Copynumber: 1.8 Consensus size: 102
23022 GGCCAGGTGC
* *
23032 ACGGTGCGCGCCCTGCCCGCCCCCTGGTGTGGGGGCGGTCGGGGCGCACACCATGCGGAGCACCG
1 ACGGTGCGCGCCCTGCCCGCCCCCTGGGGTGGGGGCGGGCGGGGCGCACACCATGCGGAGCACCG
23097 GTGCGCGCCTCGCCCACCCTCGGCTGCGGGCGGGAGA
66 GTGCGCGCCTCGCCCACCCTCGGCTGCGGGCGGGAGA
*
23134 ACGGTGCGCGCCCAT-CCCGCCCCCTGGGGTCGGGGGCGGGCGGGGCGCACGCCATGCGGAGCA-
1 ACGGTGCGCGCCC-TGCCCGCCCCCTGGGGT-GGGGGCGGGCGGGGCGCACACCATGCGGAGCAC
23197 CGGTGCGCGCCTCGCCCACCCT
64 CGGTGCGCGCCTCGCCCACCCT
23219 GGGGGGTGCG
Statistics
Matches: 80, Mismatches: 3, Indels: 4
0.92 0.03 0.05
Matches are distributed among these distances:
102 49 0.61
103 31 0.39
ACGTcount: A:0.09, C:0.41, G:0.41, T:0.10
Consensus pattern (102 bp):
ACGGTGCGCGCCCTGCCCGCCCCCTGGGGTGGGGGCGGGCGGGGCGCACACCATGCGGAGCACCG
GTGCGCGCCTCGCCCACCCTCGGCTGCGGGCGGGAGA
Found at i:23289 original size:64 final size:62
Alignment explanation
Indices: 23129--23304 Score: 168
Period size: 64 Copynumber: 2.8 Consensus size: 62
23119 GCTGCGGGCG
* ** *
23129 GGAGAACGGTGCGCGCCCATCCCGCCCCCTGGGGT-CGGGGGCGG-GCGGGGCGCACGCCATGC
1 GGAGCACGGTGCGCGCCC-TCCCGCCCCCTGGGGTGC-GGGGCGGCGCGGCACGCACGCCAGGC
*
23191 GGAGCACGGTGCGCG-CCTCGCC-CACCCTGGGGGGTGCGGGGCGGCCGCGGCACGCAC-CC-GG
1 GGAGCACGGTGCGCGCCCTC-CCGCCCCCT--GGGGTGCGGGGCGG-CGCGGCACGCACGCCAGG
23252 CC
62 -C
23254 AGGAGCACGGTGCGCGCCCTTCCCGCCCCCTGGGGTG-GGGGCGGTCGCGGC
1 -GGAGCACGGTGCGCGCCC-TCCCGCCCCCTGGGGTGCGGGGCGG-CGCGGC
23305 GCACACCGTG
Statistics
Matches: 96, Mismatches: 7, Indels: 21
0.77 0.06 0.17
Matches are distributed among these distances:
60 7 0.07
61 4 0.04
62 27 0.28
63 17 0.18
64 30 0.31
65 4 0.04
66 7 0.07
ACGTcount: A:0.08, C:0.39, G:0.45, T:0.09
Consensus pattern (62 bp):
GGAGCACGGTGCGCGCCCTCCCGCCCCCTGGGGTGCGGGGCGGCGCGGCACGCACGCCAGGC
Found at i:23382 original size:819 final size:811
Alignment explanation
Indices: 21561--23468 Score: 2339
Period size: 819 Copynumber: 2.3 Consensus size: 811
21551 GCGCGCGCAA
* * *** * *
21561 CGCCCGCCCTCGGGTGCGGACGGCCGCGGCACCCGCA-AAAGCCACGAGCATGGTGCGCGCCCTT
1 CGCCCACCCTCGGGTGCGGGCGGCCGCGGCA--CGCACCCGGCCAGGAGCACGGTGCGCGCCCTT
* * * * ** *
21625 CCCGCCCCC-AGGGTGGGAGCGGTCGGGGCGCGCACCATGCGGCGCAATGGGTGCGCACCCTTGC
64 CCCGCCCCCTGGGGTGGGGGCGGTCGGGGCGCACACC-TG-GGGGCACCGGGTGCGCACCGTTGC
* * *
21689 CGGGGTACCCAACCGACCGATGCAACGGTAAGGGACGAACACGTTTGGAGAGGGGAGGGACAGAT
127 CGGGGTACCCAACCGACCGACGCAACGCTAAGGGACGAACACGTTTGGAGAGGGGAGGGACGGAT
* * *
21754 GCCGGGGAGGGACTCGTTGCACACGCTCGGCCCTACGCATGCTTGGAGGGGGGAGGGACGGATGC
192 GCCGGGGAGGGACTCGTTGCGCACGCTTGGCCCTCCGCATGCTTGGAGGGGGGAGGGACGGATGC
*
21819 TTGGGGAGGGACTCGTTGCACACGCGTGGGCCTCCGCATGTGCTATCGGTGCCGAATTCGGGGTC
257 TTGGGGAGGGACTCGTTGCACACGCGTGGGCCTCCGCATGTGCTATCGGTGCCGAATTCGCGGTC
*
21884 GTCGGCACCGTCGCCGGAGCACCGCCGGAGAACCTGACCGGCGGTGGGGGGGAGCCCCGGCGAAT
322 CTCGGCACCGT----------CCGCCGGAGAACCTGACCGGCGGTGGGGGGGAGCCCCGGCGAA-
* *
21949 GGGGGAGGGGTGTGGGCGACGGCACGCGATGGGTGCAGGGTGGCAGCCCCGCAGGGCACCCCACT
376 -GGGGAGCGGTGT----G--GGCACGCGACGGGTGCAGGGTGGCAGCCCCGCAGGGCACCCCACT
* * * **
22014 GCCCCCCCCCTTGGTTGCTCAAGTATCACACCCCCTATAGAGCTTAAGATGGATTTCTTTGTTGT
434 G-CCCCCCCCTAGGTTGCTCAAGTATCACACCCCCTATAGAGCTTAAGAGGGATTTCTATGCCGT
* * * *
22079 CACCAGTGGAGGTGCCCACGTTCGAAACAGGGACAGTTTTTCTCCCGCACCGAGGGTGGGCCGAG
498 CACCAGCGGAAGTGACCACGTTCGAAACAGGGACAGTTTTTCTCCCGCACCGAGGGTGGGCCAAG
* * * *
22144 ACCCCACCACCTCGGGCACCCGGTGCGCGCCACGCCCACCCTCGGGTGCGCGGGGCCGAGGCTCG
563 ACCCCACCACCTCGGGCACCCGGCGCGCGCCACGCCCACCCTCGGGCGCGCGGGGCCGAGGCACA
* *
22209 CACCCGGCCCGGGGGCGCCCTTCCCGCCCCCGTGGTGGGGGCGGCCGGGGCGCACACCACGCGGA
628 CACCCGGCCCGGGCGCGCCCTGCCCGCCCCCGTGGTGGGGGCGGCCGGGGCGCACACCACGCGGA
* * * *
22274 GCGCCGGTGCGCGCCTCGCCCACCCTCGGGTGCGGCCAGGAGCACGGTGCGCGCCCTTCCCGCCC
693 GCACCGGTGCGCGCCTCGCCCACCCTCGGCTGCGGCCAGGAGAACGGTGCGCGCCCATCCCGCCC
* * * * *
22339 CCTGGGGTGGGGGGCGGTCGGGGCGCCCACCTCGCGGGGCGCCGGTGCGCGCCT
758 CCTGGGGTCGGGGGCGGGCGGGGCGCACACCTCGCGGAGCGACGGTGCGCGCCT
* * * * * *
22393 CGCCCGCCCTCTGGTGCGGGCGGCCGCGGCACGGACCCGGGCGGGAGCACGGGGCGCGCCCTTCC
1 CGCCCACCCTCGGGTGCGGGCGGCCGCGGCACGCACCCGGCCAGGAGCACGGTGCGCGCCCTTCC
*
22458 CGCCCCCTGGGGTGGGGGCGGTCGGGGCGCACACCTCGCGGGGCACCGGGTGCGCACCGTTGTCG
66 CGCCCCCTGGGGTGGGGGCGGTCGGGGCGCACACCT-G-GGGGCACCGGGTGCGCACCGTTGCCG
* *
22523 GGGTACCCAACCGACCGACGCAACGCTAAGGGACGAACACGTTTGGTTGGGGGGGAGGGACGGAT
129 GGGTACCCAACCGACCGACGCAACGCTAAGGGACGAACACGTTTGG--AGAGGGGAGGGACGGAT
* *
22588 GCTGGGGAGGGACTCGTTGCGCACGCTTGGCCCTCCGCATG-TTAGAGAGGGGGGAGGGCCGGAT
192 GCCGGGGAGGGACTCGTTGCGCACGCTTGGCCCTCCGCATGCTT-G-GAGGGGGGAGGGACGGAT
* * *
22652 GGTT-GGGAGGGACTCGTTGCCCACGCTTGGGCCTCCGCATGTGCTATCGGTGCCGAATTCGCGG
255 GCTTGGGGAGGGACTCGTTGCACACGCGTGGGCCTCCGCATGTGCTATCGGTGCCGAATTCGCGG
*
22716 TCCTCGGCACCGT-CGCCGGAGAACCTGACCGGCGGT-GGGGGGAGCCCCGGCG-A-GTG-GCGG
320 TCCTCGGCACCGTCCGCCGGAGAACCTGACCGGCGGTGGGGGGGAGCCCCGGCGAAGGGGAGCGG
* * *
22776 -GT-GGCACGCGACGGGTGCTGGGTGGCAGCCCCGCGGGGCACCCCCAGTG-CCCCCCCTAGGTT
385 TGTGGGCACGCGACGGGTGCAGGGTGGCAGCCCCGCAGGGCA-CCCCACTGCCCCCCCCTAGGTT
*
22838 GCTCAAGTATCACACCCCCTATAGAGCTTAAG-GGGCATTTCATAT-CCGTTACCAGCGGACAG-
449 GCTCAAGTATCACACCCCCTATAGAGCTTAAGAGGG-ATTTC-TATGCCGTCACCAGCGGA-AGT
* * * *
22900 GACCACGTTCGAAACAGGGTCGGTTTTTCTGCCGCACCTAGGGT-GGCGCAAG-CCCGCACCACC
511 GACCACGTTCGAAACAGGGACAGTTTTTCTCCCGCACCGAGGGTGGGC-CAAGACCC-CACCACC
* * *
22963 TCGGGCAGCCGGCGCGCGCCTCGCCCACCCTCGGGCGCG-GGCGGCCGAGGCACACCCCCGGCCA
574 TCGGGCACCCGGCGCGCGCCACGCCCACCCTCGGGCGCGCGG-GGCCGAGGCACACACCCGG-C-
* *
23027 GGTGCACGGTGCGCGCCCTGCCCGCCCCC-TGGTGTGGGGGCGGTCGGGGCGCACACCATGCGGA
636 ----C-CGG-GCGCGCCCTGCCCGCCCCCGT-G-GTGGGGGCGGCCGGGGCGCACACCACGCGGA
* *
23091 GCACCGGTGCGCGCCTCGCCCACCCTCGGCTGCGGGCGGGAGAACGGTGCGCGCCCATCCCGCCC
693 GCACCGGTGCGCGCCTCGCCCACCCTCGGCTGCGGCCAGGAGAACGGTGCGCGCCCATCCCGCCC
*
23156 CCTGGGGTCGGGGGCGGGCGGGGCGCACGCCAT-GCGGAGC-ACGGTGCGCGCCT
758 CCTGGGGTCGGGGGCGGGCGGGGCGCACACC-TCGCGGAGCGACGGTGCGCGCCT
*
23209 CGCCCACCCTGGGGGGTGCGGGGCGGCCGCGGCACGCACCCGGCCAGGAGCACGGTGCGCGCCCT
1 CGCCCACCCT--CGGGTGC-GGGCGGCCGCGGCACGCACCCGGCCAGGAGCACGGTGCGCGCCCT
* *
23274 TCCCGCCCCCTGGGGTGGGGGCGGTCGCGGCGCACACCGTGGGGAGCACCGGGTGCGCACAGTTG
63 TCCCGCCCCCTGGGGTGGGGGCGGTCGGGGCGCACACC-TGGGG-GCACCGGGTGCGCACCGTTG
* * * *
23339 CCGGGGTACCCAACCGACCGGCGCAACGCTAAGGGAAGAACACGTTCGGAGCGGGGAGGGACGGA
126 CCGGGGTACCCAACCGACCGACGCAACGCTAAGGGACGAACACGTTTGGAGAGGGGAGGGACGGA
* ** * * *
23404 TGGCCGGGGGAGGGACTCGTTGCGCATGCGTTGG-CCTCCGCCCGTTTGGTGTGGGGAGGGACGG
191 T-GCC-GGGGAGGGACTCGTTGCGCACGC-TTGGCCCTCCGCATGCTTGGAGGGGGGAGGGACGG
23468 A
253 A
23469 CGGCCTATGT
Statistics
Matches: 943, Mismatches: 99, Indels: 82
0.84 0.09 0.07
Matches are distributed among these distances:
807 10 0.01
808 159 0.17
809 39 0.04
810 7 0.01
814 1 0.00
815 4 0.00
816 41 0.04
817 139 0.15
818 27 0.03
819 174 0.18
820 7 0.01
821 1 0.00
822 16 0.02
823 23 0.02
830 3 0.00
831 29 0.03
832 120 0.13
833 2 0.00
834 121 0.13
835 20 0.02
ACGTcount: A:0.13, C:0.34, G:0.40, T:0.13
Consensus pattern (811 bp):
CGCCCACCCTCGGGTGCGGGCGGCCGCGGCACGCACCCGGCCAGGAGCACGGTGCGCGCCCTTCC
CGCCCCCTGGGGTGGGGGCGGTCGGGGCGCACACCTGGGGGCACCGGGTGCGCACCGTTGCCGGG
GTACCCAACCGACCGACGCAACGCTAAGGGACGAACACGTTTGGAGAGGGGAGGGACGGATGCCG
GGGAGGGACTCGTTGCGCACGCTTGGCCCTCCGCATGCTTGGAGGGGGGAGGGACGGATGCTTGG
GGAGGGACTCGTTGCACACGCGTGGGCCTCCGCATGTGCTATCGGTGCCGAATTCGCGGTCCTCG
GCACCGTCCGCCGGAGAACCTGACCGGCGGTGGGGGGGAGCCCCGGCGAAGGGGAGCGGTGTGGG
CACGCGACGGGTGCAGGGTGGCAGCCCCGCAGGGCACCCCACTGCCCCCCCCTAGGTTGCTCAAG
TATCACACCCCCTATAGAGCTTAAGAGGGATTTCTATGCCGTCACCAGCGGAAGTGACCACGTTC
GAAACAGGGACAGTTTTTCTCCCGCACCGAGGGTGGGCCAAGACCCCACCACCTCGGGCACCCGG
CGCGCGCCACGCCCACCCTCGGGCGCGCGGGGCCGAGGCACACACCCGGCCCGGGCGCGCCCTGC
CCGCCCCCGTGGTGGGGGCGGCCGGGGCGCACACCACGCGGAGCACCGGTGCGCGCCTCGCCCAC
CCTCGGCTGCGGCCAGGAGAACGGTGCGCGCCCATCCCGCCCCCTGGGGTCGGGGGCGGGCGGGG
CGCACACCTCGCGGAGCGACGGTGCGCGCCT
Found at i:53526 original size:1 final size:1
Alignment explanation
Indices: 53520--53546 Score: 54
Period size: 1 Copynumber: 27.0 Consensus size: 1
53510 TTCCACCTTA
53520 CCCCCCCCCCCCCCCCCCCCCCCCCCC
1 CCCCCCCCCCCCCCCCCCCCCCCCCCC
53547 TCCCATACTC
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
1 26 1.00
ACGTcount: A:0.00, C:1.00, G:0.00, T:0.00
Consensus pattern (1 bp):
C
Done.