Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold1022
Parameters: 2 7 7 80 10 50 1000
Length:  59728

Tables:   1   

This is table  1  of  1  ( 43 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1245--1284
20
2.0
20
85
9
55
40
2
0
57
1.12
7073--7097
6
4.2
6
100
0
50
16
0
0
84
0.63
7271--7315
17
2.6
17
82
6
56
26
2
0
71
0.98
8383--8425
3
14.3
3
100
0
86
67
0
0
32
0.91
9144--9234
45
2.0
45
85
4
121
28
14
14
42
1.84
13529--13603
39
2.0
37
81
5
87
40
0
0
60
0.97
16955--16993
3
13.0
3
94
0
69
64
0
2
33
1.08
17450--17486
18
2.0
19
89
5
58
48
0
0
51
1.00
17938--17998
12
5.2
12
77
20
58
47
0
1
50
1.10
17938--17990
5
9.4
5
84
15
52
47
0
0
52
1.00
17934--17990
29
2.0
28
83
13
71
45
0
0
54
0.99
19262--19300
19
2.2
18
86
9
53
41
0
0
58
0.98
20721--20764
22
2.0
22
91
8
72
52
4
2
40
1.34
21524--21598
38
1.9
39
86
2
107
57
0
2
40
1.13
21529--21588
22
2.8
22
71
16
54
60
0
3
36
1.14
22230--22298
6
10.8
6
72
17
50
43
1
0
55
1.08
22236--22298
17
3.4
17
74
19
54
44
0
0
55
0.99
23119--23148
15
1.9
16
93
6
53
53
0
0
46
1.00
23119--23148
8
3.9
8
95
4
53
53
0
0
46
1.00
23157--23198
23
1.9
21
85
9
57
47
0
0
52
1.00
23336--23379
14
3.0
14
80
6
52
25
2
2
70
1.10
23489--23549
30
2.0
30
84
6
79
34
0
1
63
1.04
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
28513--28568
19
2.9
19
80
17
62
60
1
1
35
1.17
28733--28813
31
2.6
31
79
9
87
56
1
2
39
1.20
29737--29772
15
2.4
15
90
9
56
25
5
8
61
1.46
37192--37217
12
2.2
12
100
0
52
38
15
26
19
1.91
38820--38864
16
2.9
16
80
9
58
48
0
0
51
1.00
39137--39173
16
2.3
17
86
9
51
43
0
0
56
0.99
39892--39985
12
7.9
12
72
19
56
32
0
4
62
1.14
46504--46528
4
6.2
4
100
0
50
76
0
0
24
0.80
46644--46739
32
3.0
32
72
18
85
53
0
0
46
1.00
46640--46768
37
3.5
36
74
12
111
51
0
0
48
1.00
48511--48535
4
6.2
4
100
0
50
76
0
0
24
0.80
48688--48748
31
2.0
31
83
6
79
55
0
0
44
0.99
52683--52727
14
3.4
14
73
17
51
57
0
0
42
0.98
52645--52729
25
3.4
25
76
15
86
56
1
0
42
1.07
53014--53046
2
16.5
2
100
0
66
51
0
0
48
1.00
53669--53693
13
1.9
13
100
0
50
52
0
8
40
1.31
54268--54327
8
7.6
8
77
3
59
38
0
0
61
0.96
55909--55952
22
1.9
23
81
9
54
29
0
2
68
1.02
55937--55986
25
2.0
24
85
11
66
26
0
2
72
0.96
55948--56000
22
2.4
22
78
15
56
33
0
1
64
1.05
55974--56026
23
2.4
22
78
9
54
39
1
0
58
1.09

Tables:   1

The End!