genome.fa.s1026.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold1026
Parameters: 2 7 7 80 10 50 1000
Length:  86219

Tables:   1   

This is table  1  of  1  ( 95 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1085--1116	11	2.8	12	90	9	50	65	6	0	28	1.16
1077--1116	17	2.4	17	82	0	53	65	7	0	27	1.20
2204--2230	5	5.4	5	100	0	54	18	0	0	81	0.69
2561--2596	18	2.1	18	89	5	56	52	0	5	41	1.24
5167--5202	18	2.0	18	88	0	54	33	13	2	50	1.57
9389--9414	2	13.0	2	100	0	52	50	0	0	50	1.00
9723--9754	2	16.0	2	100	0	64	50	0	0	50	1.00
10930--10958	2	14.5	2	100	0	58	48	0	0	51	1.00
11261--11341	16	4.7	18	74	23	77	44	0	0	55	0.99
11261--11339	34	2.3	34	87	10	117	44	0	0	55	0.99
11235--11344	18	5.7	18	69	28	57	40	0	0	59	0.98
11691--11731	18	2.3	18	95	0	73	9	0	46	43	1.36
12914--12986	31	2.5	29	80	12	78	57	0	0	42	0.98
12914--12990	30	2.5	30	79	8	84	57	0	0	42	0.99
12940--13004	28	2.2	30	81	5	71	63	1	0	35	1.04
13843--13901	28	2.1	28	84	12	77	59	1	0	38	1.08
13847--13915	14	4.9	14	72	21	54	59	1	0	39	1.06
13849--13929	42	1.9	43	89	2	128	61	2	0	35	1.09
14517--14566	24	2.1	24	82	10	59	40	6	0	54	1.25
14625--14650	2	13.0	2	100	0	52	50	0	0	50	1.00
14839--14888	16	3.2	16	85	5	75	36	0	0	64	0.94
14945--14985	21	2.0	21	85	9	57	41	2	2	53	1.27
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15095--15141	17	2.7	18	81	15	62	27	0	2	70	0.99
15098--15199	17	6.1	17	68	23	56	37	1	0	59	1.15
15176--15212	18	2.1	18	89	0	56	51	0	0	48	1.00
15743--15786	20	2.1	21	87	4	63	56	0	0	43	0.99
15780--15824	16	2.6	17	82	10	65	57	0	2	40	1.11
15968--16015	20	2.5	19	80	12	53	35	0	4	60	1.16
16255--16314	22	2.6	23	84	10	70	55	0	0	45	0.99
16328--16361	16	2.1	17	88	5	52	50	0	0	50	1.00
20501--20548	25	1.9	25	87	8	71	58	0	14	27	1.37
23565--23590	13	2.0	13	100	0	52	76	0	7	15	0.99
23689--23756	19	3.9	19	78	21	85	35	11	14	38	1.83
23710--23734	13	1.9	13	100	0	50	36	16	16	32	1.90
23691--23753	32	2.0	32	96	0	117	34	12	15	36	1.86
23796--23821	13	2.0	13	100	0	52	30	15	15	38	1.88
23776--23842	33	2.0	33	88	0	98	25	14	16	43	1.86
26288--26458	51	3.3	51	79	4	198	29	26	11	32	1.92
26441--26522	28	2.9	28	82	7	96	24	31	17	26	1.97
28149--28202	25	2.0	28	86	10	78	50	1	1	46	1.23
30402--30432	14	2.2	14	94	0	53	45	12	3	38	1.59
35542--35574	2	16.5	2	100	0	66	48	0	0	51	1.00
36284--36335	20	2.5	20	81	3	59	61	0	0	38	0.96
39325--39358	16	2.1	17	88	5	52	50	2	0	47	1.16
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
39381--39434	25	2.1	26	83	13	67	44	1	1	51	1.22
39378--39419	19	2.3	19	84	8	52	40	0	2	57	1.12
40042--40097	19	3.0	18	71	7	58	35	0	0	64	0.94
40463--40588	17	7.8	17	64	25	60	53	0	1	44	1.15
40435--40548	29	4.0	29	82	9	128	53	0	2	43	1.14
40757--40800	3	14.7	3	100	0	88	68	0	0	31	0.90
40760--40864	21	4.7	22	76	10	81	59	0	5	35	1.22
40910--40998	40	2.2	42	84	8	112	57	0	2	40	1.11
40957--41049	28	3.3	28	79	10	109	54	1	2	41	1.19
45229--45268	16	2.6	16	92	4	64	55	0	0	45	0.99
45636--45669	2	17.0	2	87	0	50	50	0	0	50	1.00
49265--49295	2	15.5	2	100	0	62	48	0	0	51	1.00
53930--53983	17	3.4	17	78	21	71	42	0	0	57	0.98
53928--54053	24	4.8	24	68	23	60	39	0	0	58	1.09
53927--54001	32	2.3	32	86	6	98	44	0	0	56	0.99
53903--53971	15	4.6	14	70	21	50	40	0	0	59	0.97
53932--53981	16	3.2	15	72	27	50	42	0	0	58	0.98
56448--56531	31	2.7	31	73	8	82	55	0	1	42	1.07
56447--56505	22	2.6	22	78	10	66	54	0	1	44	1.10
56479--56517	15	2.5	16	91	4	62	46	0	2	51	1.14
56500--56581	32	2.6	31	77	12	87	52	0	0	47	1.00
56525--56597	38	2.0	36	83	5	92	53	0	0	46	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
57473--57507	2	18.0	2	94	5	63	51	0	0	48	1.00
60492--60601	15	6.4	16	67	28	59	61	0	0	37	1.02
60509--60568	20	3.1	20	72	18	63	61	0	1	36	1.06
60933--60988	27	2.1	27	83	9	71	48	0	1	50	1.11
60985--61037	19	2.9	18	81	10	54	41	0	0	58	0.98
61008--61043	17	2.1	18	89	5	56	44	0	0	55	0.99
61086--61116	16	1.9	16	93	0	53	74	0	0	25	0.82
61087--61174	11	7.7	11	71	15	54	62	2	5	29	1.30
61928--61979	22	2.3	22	83	9	61	67	0	1	30	1.02
62000--62066	34	2.0	34	82	5	82	50	0	1	47	1.10
62452--62557	22	4.8	21	74	18	81	49	0	2	48	1.16
62452--62527	16	4.8	16	73	12	68	50	0	2	47	1.15
62451--62554	15	7.4	14	67	24	58	50	0	2	46	1.16
62530--62571	20	2.1	20	86	0	57	50	2	4	42	1.36
62579--62617	17	2.2	18	90	4	62	61	0	0	38	0.96
63061--63128	17	4.1	17	69	12	52	58	2	1	36	1.22
64220--64262	13	3.1	13	83	12	50	62	0	2	34	1.08
64221--64294	21	3.4	21	72	17	62	55	0	1	43	1.08
64232--64309	21	3.5	21	71	15	59	56	0	1	42	1.07
64199--64309	45	2.4	43	81	14	109	59	0	0	39	1.04
64253--64340	34	2.6	33	80	8	97	51	2	0	46	1.13
64381--64407	12	2.2	12	100	0	54	29	0	0	70	0.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
66834--66871	19	2.0	19	90	10	60	47	0	0	52	1.00
66879--66941	31	2.1	32	82	14	80	49	1	0	49	1.10
67669--67778	30	3.7	30	77	4	100	23	8	11	56	1.62
68469--68493	13	1.9	13	100	0	50	48	8	4	40	1.51
73417--73462	2	23.0	2	100	0	92	50	0	0	50	1.00
76322--76350	11	2.5	12	88	11	51	86	6	0	6	0.72
85142--85246	54	2.0	53	96	1	192	32	22	20	24	1.98

Tables:   1

The End!