Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Scaffold103
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 2633873
ACGTcount: A:0.35, C:0.15, G:0.15, T:0.35
Warning! 16636 characters in sequence are not A, C, G, or T
File 7 of 21
Found at i:716922 original size:16 final size:16
Alignment explanation
Indices: 716889--716922 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
716879 TTAATTTTTT
* *
716889 ATATTTTATATTTTAA
1 ATATTTTATAATTAAA
716905 ATATTTTATAATTAAA
1 ATATTTTATAATTAAA
716921 AT
1 AT
716923 TAAATAAAAT
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.44, C:0.00, G:0.00, T:0.56
Consensus pattern (16 bp):
ATATTTTATAATTAAA
Found at i:717063 original size:20 final size:18
Alignment explanation
Indices: 717034--717085 Score: 68
Period size: 20 Copynumber: 2.7 Consensus size: 18
717024 AGATAAAAAC
717034 TTAATTTTTAAATAGATTT
1 TTAA-TTTTAAATAGATTT
*
717053 ATTAATATTTAAATATATTT
1 -TTAAT-TTTAAATAGATTT
717073 TTAATTTTAAATA
1 TTAATTTTAAATA
717086 TTAAATAAAA
Statistics
Matches: 30, Mismatches: 1, Indels: 4
0.86 0.03 0.11
Matches are distributed among these distances:
18 8 0.27
19 6 0.20
20 16 0.53
ACGTcount: A:0.42, C:0.00, G:0.02, T:0.56
Consensus pattern (18 bp):
TTAATTTTAAATAGATTT
Found at i:717086 original size:16 final size:17
Alignment explanation
Indices: 717034--717087 Score: 54
Period size: 18 Copynumber: 2.9 Consensus size: 17
717024 AGATAAAAAC
717034 TTAATTTTTAAATAGATTTA
1 TTAA-TTTTAAAT--ATTTA
*
717054 TTAATATTTAAATATATTT
1 TTAAT-TTTAAATAT-TTA
717073 TTAATTTTAAATATT
1 TTAATTTTAAATATT
717088 AAATAAAATC
Statistics
Matches: 31, Mismatches: 1, Indels: 7
0.79 0.03 0.18
Matches are distributed among these distances:
17 1 0.03
18 11 0.35
19 8 0.26
20 11 0.35
ACGTcount: A:0.41, C:0.00, G:0.02, T:0.57
Consensus pattern (17 bp):
TTAATTTTAAATATTTA
Found at i:718653 original size:24 final size:24
Alignment explanation
Indices: 718608--718653 Score: 56
Period size: 24 Copynumber: 1.9 Consensus size: 24
718598 TATAGATATT
* * *
718608 AAATATAATTTTAATTATAAATAA
1 AAATAAAATTTTAATAAAAAATAA
*
718632 AAATAAAATTTTACTAAAAAAT
1 AAATAAAATTTTAATAAAAAAT
718654 TATGAATTAT
Statistics
Matches: 18, Mismatches: 4, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
24 18 1.00
ACGTcount: A:0.61, C:0.02, G:0.00, T:0.37
Consensus pattern (24 bp):
AAATAAAATTTTAATAAAAAATAA
Found at i:719485 original size:2 final size:2
Alignment explanation
Indices: 719478--719520 Score: 86
Period size: 2 Copynumber: 21.5 Consensus size: 2
719468 TTGCTTCTTT
719478 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
719520 T
1 T
719521 GTTCATAAAT
Statistics
Matches: 41, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 41 1.00
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (2 bp):
TA
Found at i:719596 original size:20 final size:18
Alignment explanation
Indices: 719571--719616 Score: 56
Period size: 20 Copynumber: 2.4 Consensus size: 18
719561 ATAAATATGT
*
719571 TTTTTATTAATTTAAATTAA
1 TTTTTATTAA-TTAAAAT-A
*
719591 TTTTTAATAATTAAAATA
1 TTTTTATTAATTAAAATA
719609 TTTTTATT
1 TTTTTATT
719617 TAAATTTAAC
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
18 8 0.35
19 6 0.26
20 9 0.39
ACGTcount: A:0.39, C:0.00, G:0.00, T:0.61
Consensus pattern (18 bp):
TTTTTATTAATTAAAATA
Found at i:719637 original size:21 final size:22
Alignment explanation
Indices: 719613--719660 Score: 73
Period size: 22 Copynumber: 2.2 Consensus size: 22
719603 AAAATATTTT
719613 TATTTAAAT-TTAACTAT-AAAA
1 TATTTAAATATTAA-TATAAAAA
719634 TATTTAAATATTAATATAAAAA
1 TATTTAAATATTAATATAAAAA
719656 TATTT
1 TATTT
719661 TTTTATTTAT
Statistics
Matches: 25, Mismatches: 0, Indels: 3
0.89 0.00 0.11
Matches are distributed among these distances:
21 12 0.48
22 13 0.52
ACGTcount: A:0.52, C:0.02, G:0.00, T:0.46
Consensus pattern (22 bp):
TATTTAAATATTAATATAAAAA
Found at i:719845 original size:16 final size:15
Alignment explanation
Indices: 719824--719880 Score: 53
Period size: 16 Copynumber: 3.6 Consensus size: 15
719814 TAATCTTATT
719824 TAAAATTATATATATA
1 TAAAATT-TATATATA
*
719840 TAAAATTTA-ATAAA
1 TAAAATTTATATATA
719854 TTAATAATTTATATTATA
1 -TAA-AATTTATA-TATA
*
719872 TAAATTTTA
1 TAAAATTTA
719881 AAATATTTTT
Statistics
Matches: 34, Mismatches: 3, Indels: 8
0.76 0.07 0.18
Matches are distributed among these distances:
14 4 0.12
15 5 0.15
16 18 0.53
17 4 0.12
18 3 0.09
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (15 bp):
TAAAATTTATATATA
Found at i:721165 original size:2 final size:2
Alignment explanation
Indices: 721131--721179 Score: 50
Period size: 2 Copynumber: 26.0 Consensus size: 2
721121 AAGTTTTTAG
* * *
721131 TA TA -A TA TA AA T- TA TA TA TT TA T- TA TA TT TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
721170 TA TA TA TA TA
1 TA TA TA TA TA
721180 AAATATCAGT
Statistics
Matches: 38, Mismatches: 6, Indels: 6
0.76 0.12 0.12
Matches are distributed among these distances:
1 3 0.08
2 35 0.92
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (2 bp):
TA
Found at i:721553 original size:22 final size:21
Alignment explanation
Indices: 721525--721611 Score: 68
Period size: 23 Copynumber: 4.0 Consensus size: 21
721515 TTTTTTTATT
721525 ATTAAAATATAAAATTAAATAA
1 ATTAAAATATAAAATTAAAT-A
* *
721547 ATTAAAATAATTAAATTTAATA
1 ATTAAAAT-ATAAAATTAAATA
* * *
721569 TTTAAAATATTTAAAATATATATC
1 ATTAAAATA--TAAAAT-TAAATA
*
721593 A-TAAAATATAAATTTAAAT
1 ATTAAAATATAAAATTAAAT
721612 TTAAACTAAA
Statistics
Matches: 51, Mismatches: 10, Indels: 10
0.72 0.14 0.14
Matches are distributed among these distances:
20 4 0.08
21 6 0.12
22 16 0.31
23 22 0.43
24 3 0.06
ACGTcount: A:0.60, C:0.01, G:0.00, T:0.39
Consensus pattern (21 bp):
ATTAAAATATAAAATTAAATA
Found at i:721722 original size:21 final size:21
Alignment explanation
Indices: 721683--721722 Score: 53
Period size: 21 Copynumber: 1.9 Consensus size: 21
721673 GTTAAATTAG
* *
721683 TTTGATTAATTCGGTTTATTT
1 TTTGATTAATTCAGATTATTT
*
721704 TTTGATTAATTTAGATTAT
1 TTTGATTAATTCAGATTAT
721723 CGGTTTAATT
Statistics
Matches: 16, Mismatches: 3, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
21 16 1.00
ACGTcount: A:0.25, C:0.03, G:0.12, T:0.60
Consensus pattern (21 bp):
TTTGATTAATTCAGATTATTT
Found at i:721909 original size:17 final size:16
Alignment explanation
Indices: 721883--721938 Score: 57
Period size: 17 Copynumber: 3.7 Consensus size: 16
721873 TCATCTAAAC
*
721883 TTAAACCAAAAGCCCAA
1 TTAAAACAAAA-CCCAA
*
721900 TTAAAACAAAA--AAA
1 TTAAAACAAAACCCAA
721914 TT--AACAAAACCCAA
1 TTAAAACAAAACCCAA
721928 TTAAAACAAAA
1 TTAAAACAAAA
721939 AACAAAAGAT
Statistics
Matches: 32, Mismatches: 3, Indels: 9
0.73 0.07 0.20
Matches are distributed among these distances:
12 7 0.22
14 8 0.25
16 7 0.22
17 10 0.31
ACGTcount: A:0.64, C:0.20, G:0.02, T:0.14
Consensus pattern (16 bp):
TTAAAACAAAACCCAA
Found at i:722203 original size:42 final size:42
Alignment explanation
Indices: 722144--722228 Score: 170
Period size: 42 Copynumber: 2.0 Consensus size: 42
722134 CTCTTTCCTA
722144 TCGATGCTCAATCAAATGAATGAAGGTCGACAAAATTAACTT
1 TCGATGCTCAATCAAATGAATGAAGGTCGACAAAATTAACTT
722186 TCGATGCTCAATCAAATGAATGAAGGTCGACAAAATTAACTT
1 TCGATGCTCAATCAAATGAATGAAGGTCGACAAAATTAACTT
722228 T
1 T
722229 GATTTTGGTC
Statistics
Matches: 43, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
42 43 1.00
ACGTcount: A:0.40, C:0.16, G:0.16, T:0.27
Consensus pattern (42 bp):
TCGATGCTCAATCAAATGAATGAAGGTCGACAAAATTAACTT
Found at i:726424 original size:34 final size:33
Alignment explanation
Indices: 726380--726570 Score: 215
Period size: 34 Copynumber: 5.7 Consensus size: 33
726370 GGTTTGGTAA
* *
726380 AAATCGCCATTTAATCAACAATGGCAACCTACC
1 AAATCACCATTTAATCAACAATGGTAACCTACC
* *
726413 AAATCTACCATTTAGTCAACAATGGTAAGCC-ATC
1 AAATC-ACCATTTAATCAACAATGGTAA-CCTACC
* *
726447 AAATCACCCATTTAATCAATAATGGTAAGCTACC
1 AAATCA-CCATTTAATCAACAATGGTAACCTACC
** * *
726481 AAATTTCTCATTTAGTCAACAATGGAAAACC-ACC
1 AAATCAC-CATTTAATCAACAATGG-TAACCTACC
*
726515 AAATCACCCATTTAATCAACAATGGTAAACTACC
1 AAATCA-CCATTTAATCAACAATGGTAACCTACC
726549 AAATCACCATTTAATCAACAAT
1 AAATCACCATTTAATCAACAAT
726571 TCTCCCACTT
Statistics
Matches: 131, Mismatches: 19, Indels: 16
0.79 0.11 0.10
Matches are distributed among these distances:
33 27 0.21
34 98 0.75
35 6 0.05
ACGTcount: A:0.42, C:0.25, G:0.08, T:0.25
Consensus pattern (33 bp):
AAATCACCATTTAATCAACAATGGTAACCTACC
Found at i:726495 original size:68 final size:67
Alignment explanation
Indices: 726386--726570 Score: 262
Period size: 68 Copynumber: 2.7 Consensus size: 67
726376 GTAAAAATCG
* * * * *
726386 CCATTTAATCAACAATGGCAACCTACCAAATCTACCATTTAGTCAACAATGGTAAGCCATCAAAT
1 CCATTTAATCAACAATGGTAAACTACCAAAT-TACCATTTAGTCAACAATGGAAAACCACCAAAT
726451 CAC
65 CAC
* * *
726454 CCATTTAATCAATAATGGTAAGCTACCAAATTTCTCATTTAGTCAACAATGGAAAACCACCAAAT
1 CCATTTAATCAACAATGGTAAACTACCAAATTAC-CATTTAGTCAACAATGGAAAACCACCAAAT
726519 CAC
65 CAC
* *
726522 CCATTTAATCAACAATGGTAAACTACCAAATCACCATTTAATCAACAAT
1 CCATTTAATCAACAATGGTAAACTACCAAATTACCATTTAGTCAACAAT
726571 TCTCCCACTT
Statistics
Matches: 104, Mismatches: 12, Indels: 3
0.87 0.10 0.03
Matches are distributed among these distances:
67 16 0.15
68 88 0.85
ACGTcount: A:0.42, C:0.25, G:0.08, T:0.25
Consensus pattern (67 bp):
CCATTTAATCAACAATGGTAAACTACCAAATTACCATTTAGTCAACAATGGAAAACCACCAAATC
AC
Found at i:731017 original size:34 final size:34
Alignment explanation
Indices: 730974--731159 Score: 177
Period size: 34 Copynumber: 5.5 Consensus size: 34
730964 TTGGTAAAAA
*
730974 CTACCATTTAATCAACAATGGCAACCTACCAAAT
1 CTACCATTTAATCAACAATGGTAACCTACCAAAT
* *
731008 CTACCATTTAGTCAACAATGGTAAGCC-ATCAAAT
1 CTACCATTTAATCAACAATGGTAA-CCTACCAAAT
* * **
731042 C-ACCTATTTAATCAATAATGGTAAGCTATTAAAT
1 CTACC-ATTTAATCAACAATGGTAACCTACCAAAT
* * *
731076 -TTCTCATTTAGTCAACAATGGCAAACC-ACCAAAT
1 CTAC-CATTTAATCAACAATGG-TAACCTACCAAAT
* *
731110 C-ACTCATTTAATCAACAATAGTAAACTACCAAAT
1 CTAC-CATTTAATCAACAATGGTAACCTACCAAAT
731144 -TACCATTTAATCAACA
1 CTACCATTTAATCAACA
731160 GTTACTCTAT
Statistics
Matches: 124, Mismatches: 19, Indels: 19
0.77 0.12 0.12
Matches are distributed among these distances:
33 20 0.16
34 98 0.79
35 6 0.05
ACGTcount: A:0.41, C:0.24, G:0.07, T:0.28
Consensus pattern (34 bp):
CTACCATTTAATCAACAATGGTAACCTACCAAAT
Found at i:731088 original size:68 final size:67
Alignment explanation
Indices: 730978--731159 Score: 213
Period size: 68 Copynumber: 2.7 Consensus size: 67
730968 TAAAAACTAC
* * * * * *
730978 CATTTAATCAACAATGGCAACCTACCAAATCTACCATTTAGTCAACAATGGTAAGCCATCAAATC
1 CATTTAATCAACAATAGTAAACTACCAAAT-TACCATTTAGTCAACAATGGCAAACCACCAAATC
731043 AC-
65 ACT
* * * ** *
731045 CTATTTAATCAATAATGGTAAGCTATTAAATTTCTCATTTAGTCAACAATGGCAAACCACCAAAT
1 C-ATTTAATCAACAATAGTAAACTACCAAATTAC-CATTTAGTCAACAATGGCAAACCACCAAAT
731110 CACT
64 CACT
*
731114 CATTTAATCAACAATAGTAAACTACCAAATTACCATTTAATCAACA
1 CATTTAATCAACAATAGTAAACTACCAAATTACCATTTAGTCAACA
731160 GTTACTCTAT
Statistics
Matches: 96, Mismatches: 16, Indels: 6
0.81 0.14 0.05
Matches are distributed among these distances:
67 15 0.16
68 80 0.83
69 1 0.01
ACGTcount: A:0.42, C:0.23, G:0.07, T:0.28
Consensus pattern (67 bp):
CATTTAATCAACAATAGTAAACTACCAAATTACCATTTAGTCAACAATGGCAAACCACCAAATCA
CT
Found at i:732720 original size:46 final size:46
Alignment explanation
Indices: 732653--732742 Score: 171
Period size: 46 Copynumber: 2.0 Consensus size: 46
732643 TAAGTGCCCA
732653 ATATAATCAATCGAACTCTAATGCACAACTAATTAGAGACTCATTT
1 ATATAATCAATCGAACTCTAATGCACAACTAATTAGAGACTCATTT
*
732699 ATATAATCAATCGAACTCTAATTCACAACTAATTAGAGACTCAT
1 ATATAATCAATCGAACTCTAATGCACAACTAATTAGAGACTCAT
732743 GACTTCTAAA
Statistics
Matches: 43, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
46 43 1.00
ACGTcount: A:0.42, C:0.20, G:0.08, T:0.30
Consensus pattern (46 bp):
ATATAATCAATCGAACTCTAATGCACAACTAATTAGAGACTCATTT
Found at i:732740 original size:24 final size:24
Alignment explanation
Indices: 732667--732740 Score: 57
Period size: 24 Copynumber: 3.2 Consensus size: 24
732657 AATCAATCGA
*
732667 ACTCTAATGCACAACTAATTAGAG
1 ACTCTAATTCACAACTAATTAGAG
* * * *
732691 ACTC--ATTTATATAATCAA-TCGA-
1 ACTCTAATTCACA-ACT-AATTAGAG
732713 ACTCTAATTCACAACTAATTAGAG
1 ACTCTAATTCACAACTAATTAGAG
732737 ACTC
1 ACTC
732741 ATGACTTCTA
Statistics
Matches: 35, Mismatches: 9, Indels: 12
0.62 0.16 0.21
Matches are distributed among these distances:
22 10 0.29
23 10 0.29
24 15 0.43
ACGTcount: A:0.41, C:0.22, G:0.08, T:0.30
Consensus pattern (24 bp):
ACTCTAATTCACAACTAATTAGAG
Found at i:734239 original size:3 final size:3
Alignment explanation
Indices: 734225--734262 Score: 67
Period size: 3 Copynumber: 12.7 Consensus size: 3
734215 TCAAATATAA
*
734225 ATC ATT ATC ATC ATC ATC ATC ATC ATC ATC ATC ATC AT
1 ATC ATC ATC ATC ATC ATC ATC ATC ATC ATC ATC ATC AT
734263 TATTATTATT
Statistics
Matches: 33, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
3 33 1.00
ACGTcount: A:0.34, C:0.29, G:0.00, T:0.37
Consensus pattern (3 bp):
ATC
Found at i:734444 original size:23 final size:23
Alignment explanation
Indices: 734418--734461 Score: 70
Period size: 23 Copynumber: 1.9 Consensus size: 23
734408 TAATAATAAA
*
734418 ATTTATTATTAATATATAAATTC
1 ATTTATTAATAATATATAAATTC
*
734441 ATTTATTAATATTATATAAAT
1 ATTTATTAATAATATATAAAT
734462 ATAAATCTTT
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
23 19 1.00
ACGTcount: A:0.45, C:0.02, G:0.00, T:0.52
Consensus pattern (23 bp):
ATTTATTAATAATATATAAATTC
Found at i:734901 original size:15 final size:15
Alignment explanation
Indices: 734881--734942 Score: 54
Period size: 15 Copynumber: 3.9 Consensus size: 15
734871 TCAATAAATC
734881 ATAAAATATAATTAT
1 ATAAAATATAATTAT
* *
734896 ATAAAAAATAATAAT
1 ATAAAATATAATTAT
734911 ATAAATAATTATAAAATTAT
1 AT-AA-AA-TAT--AATTAT
734931 ATAAAAT-TAATT
1 ATAAAATATAATT
734943 TAATTTTATA
Statistics
Matches: 38, Mismatches: 4, Indels: 11
0.72 0.08 0.21
Matches are distributed among these distances:
14 4 0.11
15 15 0.39
16 3 0.08
17 3 0.08
18 4 0.11
19 2 0.05
20 7 0.18
ACGTcount: A:0.63, C:0.00, G:0.00, T:0.37
Consensus pattern (15 bp):
ATAAAATATAATTAT
Found at i:734904 original size:25 final size:28
Alignment explanation
Indices: 734863--734923 Score: 67
Period size: 25 Copynumber: 2.3 Consensus size: 28
734853 GTTAACATAC
* * *
734863 ATAA-TATATCAATAAATCATAA-A-AT
1 ATAATTATATCAAAAAATAATAATATAA
734888 ATAATTATAT-AAAAAATAATAATATAA
1 ATAATTATATCAAAAAATAATAATATAA
734915 ATAATTATA
1 ATAATTATA
734924 AAATTATATA
Statistics
Matches: 30, Mismatches: 3, Indels: 4
0.81 0.08 0.11
Matches are distributed among these distances:
25 14 0.47
26 6 0.20
27 10 0.33
ACGTcount: A:0.62, C:0.03, G:0.00, T:0.34
Consensus pattern (28 bp):
ATAATTATATCAAAAAATAATAATATAA
Found at i:736027 original size:20 final size:20
Alignment explanation
Indices: 735984--736033 Score: 55
Period size: 20 Copynumber: 2.5 Consensus size: 20
735974 ATGGTGGAGG
*
735984 TAAAATTAGATACTGTAGTAA
1 TAAAATTA-ATACTATAGTAA
* *
736005 TAAAATTAATATTATAGTGA
1 TAAAATTAATACTATAGTAA
*
736025 TAAGATTAA
1 TAAAATTAA
736034 AACCAGTTAT
Statistics
Matches: 25, Mismatches: 4, Indels: 1
0.83 0.13 0.03
Matches are distributed among these distances:
20 17 0.68
21 8 0.32
ACGTcount: A:0.50, C:0.02, G:0.12, T:0.36
Consensus pattern (20 bp):
TAAAATTAATACTATAGTAA
Found at i:736326 original size:20 final size:20
Alignment explanation
Indices: 736289--736326 Score: 51
Period size: 20 Copynumber: 1.9 Consensus size: 20
736279 TAATTCATAT
*
736289 TATTATATAATAATAAAATA
1 TATTATATAATAAAAAAATA
736309 TATTATATTAA-AAAAAAA
1 TATTATA-TAATAAAAAAA
736327 AAGAGTTTGA
Statistics
Matches: 16, Mismatches: 1, Indels: 2
0.84 0.05 0.11
Matches are distributed among these distances:
20 13 0.81
21 3 0.19
ACGTcount: A:0.63, C:0.00, G:0.00, T:0.37
Consensus pattern (20 bp):
TATTATATAATAAAAAAATA
Found at i:740535 original size:23 final size:23
Alignment explanation
Indices: 740476--740537 Score: 67
Period size: 23 Copynumber: 2.7 Consensus size: 23
740466 AAAATATAAT
740476 ATTTAAATAATAAA-TAGATTCAA
1 ATTTAAATAA-AAATTAGATTCAA
*
740499 ATTCTTGAAT--AAATTAGATTCAA
1 A-T-TTAAATAAAAATTAGATTCAA
740522 ATTTAAATAAAAATTA
1 ATTTAAATAAAAATTA
740538 TAGATATTTG
Statistics
Matches: 32, Mismatches: 2, Indels: 10
0.73 0.05 0.23
Matches are distributed among these distances:
21 5 0.16
22 4 0.12
23 17 0.53
24 1 0.03
25 5 0.16
ACGTcount: A:0.53, C:0.05, G:0.05, T:0.37
Consensus pattern (23 bp):
ATTTAAATAAAAATTAGATTCAA
Found at i:741367 original size:22 final size:22
Alignment explanation
Indices: 741350--741391 Score: 68
Period size: 22 Copynumber: 2.0 Consensus size: 22
741340 TTATTATTTA
741350 AATATTAAAATATTATTAAATT
1 AATATTAAAATATTATTAAATT
*
741372 AATATTTAAATATT-TTAAAT
1 AATATTAAAATATTATTAAAT
741392 ACATTCAAAA
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
21 6 0.32
22 13 0.68
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (22 bp):
AATATTAAAATATTATTAAATT
Found at i:741690 original size:22 final size:22
Alignment explanation
Indices: 741673--741714 Score: 68
Period size: 22 Copynumber: 2.0 Consensus size: 22
741663 TTATTATTTA
741673 AATATTAAAATATTATTAAATT
1 AATATTAAAATATTATTAAATT
*
741695 AATATTTAAATATT-TTAAAT
1 AATATTAAAATATTATTAAAT
741715 ACATTCAAAA
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
21 6 0.32
22 13 0.68
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (22 bp):
AATATTAAAATATTATTAAATT
Found at i:745605 original size:140 final size:140
Alignment explanation
Indices: 745454--745742 Score: 551
Period size: 140 Copynumber: 2.1 Consensus size: 140
745444 ACTAATTTAT
*
745454 AAATAAAATATTTATTTTATATTATAAAAATTAAAAATTAAATAAAAATAGAATTCATTTCGATT
1 AAATCAAATATTTATTTTATATTATAAAAATTAAAAATTAAATAAAAATAGAATTCATTTCGATT
745519 TGGAGAATTGTAGTTTTTTAATTTGTGAACTAAAAATCGAATCGAACCAAATATATATCATTAAT
66 TGGAGAATTGTAGTTTTTTAATTTGTGAACTAAAAATCGAATCGAACCAAATATATATCATTAAT
**
745584 ATCTGAACAA
131 ATCCAAACAA
745594 AAATCAAATATTTATTTTATATTATAAAAATTAAAAATTAAATAAAAATAGAATTCATTTCGATT
1 AAATCAAATATTTATTTTATATTATAAAAATTAAAAATTAAATAAAAATAGAATTCATTTCGATT
745659 TGGAGAATTGTAGTTTTTTAATTTGTGAACTAAAAATCGAATCGAACCAAATATATATCATTAAT
66 TGGAGAATTGTAGTTTTTTAATTTGTGAACTAAAAATCGAATCGAACCAAATATATATCATTAAT
745724 ATCCAAACAA
131 ATCCAAACAA
745734 AAATCAAAT
1 AAATCAAAT
745743 TAAATTTAAT
Statistics
Matches: 146, Mismatches: 3, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
140 146 1.00
ACGTcount: A:0.48, C:0.08, G:0.08, T:0.36
Consensus pattern (140 bp):
AAATCAAATATTTATTTTATATTATAAAAATTAAAAATTAAATAAAAATAGAATTCATTTCGATT
TGGAGAATTGTAGTTTTTTAATTTGTGAACTAAAAATCGAATCGAACCAAATATATATCATTAAT
ATCCAAACAA
Found at i:746330 original size:21 final size:20
Alignment explanation
Indices: 746293--746331 Score: 51
Period size: 21 Copynumber: 1.9 Consensus size: 20
746283 TTTTTTTCCT
*
746293 TAAAAATAATAAGAAAATGA
1 TAAAAATAATAAAAAAATGA
*
746313 TAAAGAATAGTAAAAAAAT
1 TAAA-AATAATAAAAAAAT
746332 TTATAAAAAA
Statistics
Matches: 16, Mismatches: 2, Indels: 1
0.84 0.11 0.05
Matches are distributed among these distances:
20 4 0.25
21 12 0.75
ACGTcount: A:0.69, C:0.00, G:0.10, T:0.21
Consensus pattern (20 bp):
TAAAAATAATAAAAAAATGA
Found at i:746463 original size:16 final size:16
Alignment explanation
Indices: 746444--746477 Score: 59
Period size: 16 Copynumber: 2.1 Consensus size: 16
746434 CCTTTTTCTC
746444 TTTTTATCTTTTATTT
1 TTTTTATCTTTTATTT
*
746460 TTTTTATTTTTTATTT
1 TTTTTATCTTTTATTT
746476 TT
1 TT
746478 CTTGTTCCCT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.12, C:0.03, G:0.00, T:0.85
Consensus pattern (16 bp):
TTTTTATCTTTTATTT
Found at i:747377 original size:2 final size:2
Alignment explanation
Indices: 747370--747395 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
747360 GGGCTGCAGC
747370 GA GA GA GA GA GA GA GA GA GA GA GA GA
1 GA GA GA GA GA GA GA GA GA GA GA GA GA
747396 AAGGGATGGC
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.50, C:0.00, G:0.50, T:0.00
Consensus pattern (2 bp):
GA
Found at i:747642 original size:18 final size:17
Alignment explanation
Indices: 747619--747652 Score: 50
Period size: 18 Copynumber: 1.9 Consensus size: 17
747609 ATTTAAATTA
747619 TAATTACATATATATTTT
1 TAATTACAT-TATATTTT
*
747637 TAATTATATTATATTT
1 TAATTACATTATATTT
747653 ATTATAATTA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 7 0.47
18 8 0.53
ACGTcount: A:0.38, C:0.03, G:0.00, T:0.59
Consensus pattern (17 bp):
TAATTACATTATATTTT
Found at i:750170 original size:12 final size:12
Alignment explanation
Indices: 750153--750216 Score: 58
Period size: 12 Copynumber: 5.2 Consensus size: 12
750143 ATAATTTTAA
750153 ATTATATAATAT
1 ATTATATAATAT
*
750165 ATTATATCATTTAT
1 ATTATAT-A-ATAT
* *
750179 TTTATATAATGT
1 ATTATATAATAT
750191 ATTATATAATA-
1 ATTATATAATAT
*
750202 ATTTATATAAAAT
1 A-TTATATAATAT
750215 AT
1 AT
750217 AAATGTTTTA
Statistics
Matches: 41, Mismatches: 7, Indels: 8
0.73 0.12 0.14
Matches are distributed among these distances:
11 1 0.02
12 28 0.68
13 3 0.07
14 9 0.22
ACGTcount: A:0.45, C:0.02, G:0.02, T:0.52
Consensus pattern (12 bp):
ATTATATAATAT
Found at i:750210 original size:26 final size:26
Alignment explanation
Indices: 750154--750217 Score: 76
Period size: 26 Copynumber: 2.5 Consensus size: 26
750144 TAATTTTAAA
* *
750154 TTATATAATATATTATATCATTTATT
1 TTATATAATATATTATATCAATAATT
*
750180 TTATATAATGTATTATAT-AATAATT
1 TTATATAATATATTATATCAATAATT
*
750205 TATATAAAATATA
1 T-TATATAATATA
750218 AATGTTTTAT
Statistics
Matches: 32, Mismatches: 5, Indels: 2
0.82 0.13 0.05
Matches are distributed among these distances:
25 6 0.19
26 26 0.81
ACGTcount: A:0.45, C:0.02, G:0.02, T:0.52
Consensus pattern (26 bp):
TTATATAATATATTATATCAATAATT
Found at i:751465 original size:100 final size:102
Alignment explanation
Indices: 751352--751536 Score: 304
Period size: 100 Copynumber: 1.8 Consensus size: 102
751342 CCTGGAAAGT
751352 AAGAATTTTGTTAAATCAGAAAGTAAATGCGTTAAACTTATGGAATTGATAAATGATTGTAATTT
1 AAGAATTTTGTTAAATCAGAAAGTAAATGCGTTAAACTTATGGAATTGATAAATGATTGTAATTT
751417 -AGGAAGTTCAT-T-ACATCTGTTTTGTTTTTTTTTTA
66 GA-GAAGTTCATATGACATCTGTTTTGTTTTTTTTTTA
* * **
751452 AAGATTTTTGTTAAATCAGAAAGTAAATGGGTTAAGTTTATGGAATTGATAAATGATTGTAATTT
1 AAGAATTTTGTTAAATCAGAAAGTAAATGCGTTAAACTTATGGAATTGATAAATGATTGTAATTT
751517 GAGAAGTTCATATGACATCT
66 GAGAAGTTCATATGACATCT
751537 TGTAATTTGA
Statistics
Matches: 78, Mismatches: 4, Indels: 4
0.91 0.05 0.05
Matches are distributed among these distances:
100 70 0.90
101 2 0.03
102 6 0.08
ACGTcount: A:0.36, C:0.05, G:0.18, T:0.41
Consensus pattern (102 bp):
AAGAATTTTGTTAAATCAGAAAGTAAATGCGTTAAACTTATGGAATTGATAAATGATTGTAATTT
GAGAAGTTCATATGACATCTGTTTTGTTTTTTTTTTA
Found at i:751548 original size:28 final size:28
Alignment explanation
Indices: 751508--751565 Score: 100
Period size: 28 Copynumber: 2.1 Consensus size: 28
751498 TGATAAATGA
751508 TTGTAATTTGAGAAGTTCATAT-GACATC
1 TTGTAATTTGAGAAGTTCATATAG-CATC
751536 TTGTAATTTGAGAAGTTCATATAGCATC
1 TTGTAATTTGAGAAGTTCATATAGCATC
751564 TT
1 TT
751566 CATTTTATTT
Statistics
Matches: 29, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
28 28 0.97
29 1 0.03
ACGTcount: A:0.31, C:0.10, G:0.17, T:0.41
Consensus pattern (28 bp):
TTGTAATTTGAGAAGTTCATATAGCATC
Found at i:753504 original size:82 final size:82
Alignment explanation
Indices: 753304--753540 Score: 345
Period size: 82 Copynumber: 2.9 Consensus size: 82
753294 AATTCTTATT
* * *
753304 ATGTCAACATAAAAAGTTAAAA-GATTGATTTCTTTTAATGGAAGATCATCTTTATATACAAATT
1 ATGTCAATATAAAAAGTTAAAAGGATCGATTTCTTTTAATGGAAGATCATC-TTATGTACAAATT
* *
753368 TTCAATTATGATTAGTTC
65 TTTAATTATGATTAGCTC
* *
753386 ATGTTAATATAAAAAGTT-AAAGGATCGATTTCTTTTAATGGAAGATCATC-TATGCACAAATTT
1 ATGTCAATATAAAAAGTTAAAAGGATCGATTTCTTTTAATGGAAGATCATCTTATGTACAAATTT
753449 TTAATTATGATTAGCTC
66 TTAATTATGATTAGCTC
* *
753466 ATGTCAATATAAAAAGTTAAAAGGATCGATTTCTTTTTAATAGAAGATTATCTTTATGTACAAAT
1 ATGTCAATATAAAAAGTTAAAAGGATCGATTTC-TTTTAATGGAAGATCATC-TTATGTACAAAT
753531 TTTTAATTAT
64 TTTTAATTAT
753541 AGTTAATTCG
Statistics
Matches: 139, Mismatches: 11, Indels: 8
0.88 0.07 0.05
Matches are distributed among these distances:
80 43 0.31
81 17 0.12
82 59 0.42
84 20 0.14
ACGTcount: A:0.39, C:0.09, G:0.12, T:0.41
Consensus pattern (82 bp):
ATGTCAATATAAAAAGTTAAAAGGATCGATTTCTTTTAATGGAAGATCATCTTATGTACAAATTT
TTAATTATGATTAGCTC
Found at i:757042 original size:22 final size:21
Alignment explanation
Indices: 756999--757049 Score: 57
Period size: 22 Copynumber: 2.3 Consensus size: 21
756989 TAAAAAAATA
* * *
756999 AAAATAAAATCAGATACGATT
1 AAAATATAATCAGACACAATT
757020 AAAATATAATCAAGACACAATT
1 AAAATATAATC-AGACACAATT
757042 AAATATAT
1 AAA-ATAT
757050 CATAAACTTT
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
21 10 0.40
22 11 0.44
23 4 0.16
ACGTcount: A:0.59, C:0.10, G:0.06, T:0.25
Consensus pattern (21 bp):
AAAATATAATCAGACACAATT
Found at i:757184 original size:26 final size:27
Alignment explanation
Indices: 757155--757211 Score: 71
Period size: 28 Copynumber: 2.1 Consensus size: 27
757145 TCAAAAATAA
*
757155 ATTTTAAGAATTAA-AAAAATATTTAT
1 ATTTTAAGAATTAATAAAAATATTAAT
* *
757181 ATTTTAATATTTAATTAAAAATATTAAT
1 ATTTTAAGAATTAA-TAAAAATATTAAT
757209 ATT
1 ATT
757212 ATATAAAAAA
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
26 12 0.46
28 14 0.54
ACGTcount: A:0.51, C:0.00, G:0.02, T:0.47
Consensus pattern (27 bp):
ATTTTAAGAATTAATAAAAATATTAAT
Found at i:757209 original size:20 final size:20
Alignment explanation
Indices: 757184--757225 Score: 59
Period size: 20 Copynumber: 2.1 Consensus size: 20
757174 TATTTATATT
*
757184 TTAATATT-TAATTAAAAATA
1 TTAATATTAT-ATAAAAAATA
757204 TTAATATTATATAAAAAATA
1 TTAATATTATATAAAAAATA
757224 TT
1 TT
757226 TTCTATTGTA
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
20 19 0.95
21 1 0.05
ACGTcount: A:0.55, C:0.00, G:0.00, T:0.45
Consensus pattern (20 bp):
TTAATATTATATAAAAAATA
Found at i:758444 original size:27 final size:28
Alignment explanation
Indices: 758433--758494 Score: 69
Period size: 25 Copynumber: 2.3 Consensus size: 28
758423 TATATCATAG
758433 TTATTATAA-TTTTAAATATAATAAATA
1 TTATTATAATTTTTAAATATAATAAATA
*
758460 TTATTATAA---TTAATTATAATAAATAA
1 TTATTATAATTTTTAAATATAATAAAT-A
*
758486 TAATTATAA
1 TTATTATAA
758495 AATTAATGAT
Statistics
Matches: 32, Mismatches: 2, Indels: 3
0.86 0.05 0.08
Matches are distributed among these distances:
25 14 0.44
26 9 0.28
27 9 0.28
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (28 bp):
TTATTATAATTTTTAAATATAATAAATA
Found at i:760438 original size:15 final size:17
Alignment explanation
Indices: 760408--760448 Score: 50
Period size: 15 Copynumber: 2.5 Consensus size: 17
760398 TATAAATATG
* *
760408 ATTATATAATATATAA-
1 ATTATATAAAAGATAAT
760424 A-TATATAAAAGATAAT
1 ATTATATAAAAGATAAT
760440 ATTATATAA
1 ATTATATAA
760449 TTTAGAATGA
Statistics
Matches: 21, Mismatches: 2, Indels: 3
0.81 0.08 0.12
Matches are distributed among these distances:
15 12 0.57
16 2 0.10
17 7 0.33
ACGTcount: A:0.59, C:0.00, G:0.02, T:0.39
Consensus pattern (17 bp):
ATTATATAAAAGATAAT
Found at i:762003 original size:3 final size:3
Alignment explanation
Indices: 761995--762021 Score: 54
Period size: 3 Copynumber: 9.0 Consensus size: 3
761985 CCGTTCTGCC
761995 ATT ATT ATT ATT ATT ATT ATT ATT ATT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT
762022 TGAACACATA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 24 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (3 bp):
ATT
Found at i:762910 original size:15 final size:15
Alignment explanation
Indices: 762890--762925 Score: 54
Period size: 15 Copynumber: 2.4 Consensus size: 15
762880 ACTTTCATAA
*
762890 TAAATTAATTTAATT
1 TAAATTAAATTAATT
762905 TAAATTAAATTAATT
1 TAAATTAAATTAATT
*
762920 AAAATT
1 TAAATT
762926 TAATAAAATT
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
15 19 1.00
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (15 bp):
TAAATTAAATTAATT
Found at i:765887 original size:17 final size:17
Alignment explanation
Indices: 765850--765889 Score: 53
Period size: 17 Copynumber: 2.4 Consensus size: 17
765840 ATTTTAAAAA
* *
765850 TAAAAATTAAATTTGCG
1 TAAAAATAAAATTTACG
*
765867 TAAAAATAAAATTTACT
1 TAAAAATAAAATTTACG
765884 TAAAAA
1 TAAAAA
765890 ATAGATTAAG
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
17 20 1.00
ACGTcount: A:0.57, C:0.05, G:0.05, T:0.33
Consensus pattern (17 bp):
TAAAAATAAAATTTACG
Found at i:765993 original size:23 final size:21
Alignment explanation
Indices: 765946--766014 Score: 88
Period size: 20 Copynumber: 3.3 Consensus size: 21
765936 GGCTAATAAG
*
765946 ATTTTTATTATATAATT-TAT
1 ATTTTTATAATATAATTATAT
*
765966 ATTTTTATAATATAATTACAT
1 ATTTTTATAATATAATTATAT
765987 ATATTTTATAATAATAATTATA-
1 AT-TTTTATAAT-ATAATTATAT
766009 ATTTTT
1 ATTTTT
766015 TTATTAATTG
Statistics
Matches: 43, Mismatches: 3, Indels: 5
0.84 0.06 0.10
Matches are distributed among these distances:
20 16 0.37
21 8 0.19
22 11 0.26
23 8 0.19
ACGTcount: A:0.41, C:0.01, G:0.00, T:0.58
Consensus pattern (21 bp):
ATTTTTATAATATAATTATAT
Found at i:766058 original size:23 final size:21
Alignment explanation
Indices: 766032--766077 Score: 56
Period size: 23 Copynumber: 2.1 Consensus size: 21
766022 TTGTTAATTT
*
766032 ATTAAAATATTTTTATAATAAAA
1 ATTAAAATATATTT-TAA-AAAA
*
766055 ATTATAATATATTTTAAAAAA
1 ATTAAAATATATTTTAAAAAA
766076 AT
1 AT
766078 GTTAAAAAAA
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
21 6 0.29
22 3 0.14
23 12 0.57
ACGTcount: A:0.57, C:0.00, G:0.00, T:0.43
Consensus pattern (21 bp):
ATTAAAATATATTTTAAAAAA
Found at i:766098 original size:24 final size:22
Alignment explanation
Indices: 766063--766135 Score: 62
Period size: 24 Copynumber: 3.2 Consensus size: 22
766053 AAATTATAAT
*
766063 ATATTTTAAAAAAATGTTAAAAA
1 ATATATTAAAAAAAT-TTAAAAA
766086 A-ACTTATTAAAAATTAATTTAAAAA
1 ATA--TATTAAAAA--AATTTAAAAA
*
766111 ATATATT-AAAAAA-TAAAAAA
1 ATATATTAAAAAAATTTAAAAA
766131 ATATA
1 ATATA
766136 AAAATGAATT
Statistics
Matches: 43, Mismatches: 2, Indels: 13
0.74 0.03 0.22
Matches are distributed among these distances:
20 11 0.26
21 2 0.05
22 1 0.02
23 5 0.12
24 12 0.28
25 8 0.19
26 4 0.09
ACGTcount: A:0.64, C:0.01, G:0.01, T:0.33
Consensus pattern (22 bp):
ATATATTAAAAAAATTTAAAAA
Found at i:766124 original size:12 final size:12
Alignment explanation
Indices: 766063--766125 Score: 51
Period size: 12 Copynumber: 5.2 Consensus size: 12
766053 AAATTATAAT
*
766063 ATATTTTAAAAA
1 ATATATTAAAAA
*
766075 A-ATGTTAAAAA
1 ATATATTAAAAA
766086 A-ACTTATTAAAAA
1 ATA--TATTAAAAA
*
766099 TTA-ATTTAAAAA
1 ATATA-TTAAAAA
766111 ATATATTAAAAA
1 ATATATTAAAAA
766123 ATA
1 ATA
766126 AAAAAATATA
Statistics
Matches: 42, Mismatches: 4, Indels: 10
0.75 0.07 0.18
Matches are distributed among these distances:
11 12 0.29
12 20 0.48
13 9 0.21
14 1 0.02
ACGTcount: A:0.62, C:0.02, G:0.02, T:0.35
Consensus pattern (12 bp):
ATATATTAAAAA
Found at i:766272 original size:13 final size:13
Alignment explanation
Indices: 766247--766284 Score: 51
Period size: 13 Copynumber: 2.8 Consensus size: 13
766237 ATTTGTTTAA
766247 AATTTAAATTTATT
1 AATTTAAA-TTATT
766261 AATTTAAATTATT
1 AATTTAAATTATT
766274 -ATTTAATATTA
1 AATTTAA-ATTA
766285 AAAATAATTT
Statistics
Matches: 23, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
12 6 0.26
13 9 0.39
14 8 0.35
ACGTcount: A:0.45, C:0.00, G:0.00, T:0.55
Consensus pattern (13 bp):
AATTTAAATTATT
Found at i:766277 original size:20 final size:19
Alignment explanation
Indices: 766253--766311 Score: 52
Period size: 19 Copynumber: 3.2 Consensus size: 19
766243 TTAAAATTTA
766253 AATTTATTAATTTAAATTAT
1 AATTTATT-ATTTAAATTAT
* * *
766273 TATTTAATA-TTAAA-AAT
1 AATTTATTATTTAAATTAT
766290 AATTTATTTATTTAAATT-T
1 AATTTA-TTATTTAAATTAT
766309 AAT
1 AAT
766312 ATATAAATAT
Statistics
Matches: 30, Mismatches: 6, Indels: 7
0.70 0.14 0.16
Matches are distributed among these distances:
17 7 0.23
18 7 0.23
19 10 0.33
20 6 0.20
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (19 bp):
AATTTATTATTTAAATTAT
Found at i:766324 original size:14 final size:14
Alignment explanation
Indices: 766302--766334 Score: 50
Period size: 14 Copynumber: 2.4 Consensus size: 14
766292 TTTATTTATT
766302 TAAAT-TTAATATA
1 TAAATATTAATATA
766315 TAAATATTAATATA
1 TAAATATTAATATA
*
766329 AAAATA
1 TAAATA
766335 ATGTTTTGAT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
13 5 0.28
14 13 0.72
ACGTcount: A:0.61, C:0.00, G:0.00, T:0.39
Consensus pattern (14 bp):
TAAATATTAATATA
Found at i:767320 original size:20 final size:19
Alignment explanation
Indices: 767281--767342 Score: 65
Period size: 20 Copynumber: 3.3 Consensus size: 19
767271 TTTAAGCATA
*
767281 AAATATAAAT-TTATATTT
1 AAATATAAATATTAAATTT
767299 AAATATAAATAATTAAATTT
1 AAATATAAAT-ATTAAATTT
* *
767319 AAA-ATTAAATATAAAAATT
1 AAATA-TAAATATTAAATTT
767338 AAATA
1 AAATA
767343 GATATTTTAC
Statistics
Matches: 37, Mismatches: 3, Indels: 6
0.80 0.07 0.13
Matches are distributed among these distances:
18 10 0.27
19 11 0.30
20 16 0.43
ACGTcount: A:0.61, C:0.00, G:0.00, T:0.39
Consensus pattern (19 bp):
AAATATAAATATTAAATTT
Found at i:767326 original size:26 final size:25
Alignment explanation
Indices: 767280--767341 Score: 88
Period size: 26 Copynumber: 2.4 Consensus size: 25
767270 ATTTAAGCAT
* *
767280 AAAATATAAATTTATATTTAAATATA
1 AAAAT-TAAATTTAAAATTAAATATA
767306 AATAATTAAATTTAAAATTAAATATA
1 AA-AATTAAATTTAAAATTAAATATA
767332 AAAATTAAAT
1 AAAATTAAAT
767342 AGATATTTTA
Statistics
Matches: 33, Mismatches: 2, Indels: 3
0.87 0.05 0.08
Matches are distributed among these distances:
25 8 0.24
26 22 0.67
27 3 0.09
ACGTcount: A:0.61, C:0.00, G:0.00, T:0.39
Consensus pattern (25 bp):
AAAATTAAATTTAAAATTAAATATA
Found at i:767649 original size:11 final size:11
Alignment explanation
Indices: 767619--767654 Score: 54
Period size: 11 Copynumber: 3.2 Consensus size: 11
767609 TTAATATATT
767619 TAAATATTAAA
1 TAAATATTAAA
*
767630 TTTAATATTAAA
1 -TAAATATTAAA
767642 TAAATATTAAA
1 TAAATATTAAA
767653 TA
1 TA
767655 TATGTAATAA
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
11 12 0.55
12 10 0.45
ACGTcount: A:0.58, C:0.00, G:0.00, T:0.42
Consensus pattern (11 bp):
TAAATATTAAA
Found at i:767688 original size:20 final size:21
Alignment explanation
Indices: 767650--767691 Score: 59
Period size: 22 Copynumber: 2.0 Consensus size: 21
767640 AATAAATATT
767650 AAATATATGTAATAATTAATAA
1 AAATATATGTAAT-ATTAATAA
*
767672 AAATATATTTAAT-TTAATAA
1 AAATATATGTAATATTAATAA
767692 TATGATTTTT
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
20 7 0.37
22 12 0.63
ACGTcount: A:0.57, C:0.00, G:0.02, T:0.40
Consensus pattern (21 bp):
AAATATATGTAATATTAATAA
Found at i:768450 original size:18 final size:16
Alignment explanation
Indices: 768416--768462 Score: 53
Period size: 15 Copynumber: 2.9 Consensus size: 16
768406 TTTTATAATT
*
768416 ATAAA-ATTAATTATAA
1 ATAAATATTAA-TATTA
768432 ATTAAATATTAATATTA
1 A-TAAATATTAATATTA
768449 A-AAATATTAATATT
1 ATAAATATTAATATT
768463 TTTTATTTTT
Statistics
Matches: 28, Mismatches: 1, Indels: 5
0.82 0.03 0.15
Matches are distributed among these distances:
15 13 0.46
16 1 0.04
17 9 0.32
18 5 0.18
ACGTcount: A:0.57, C:0.00, G:0.00, T:0.43
Consensus pattern (16 bp):
ATAAATATTAATATTA
Found at i:768531 original size:20 final size:20
Alignment explanation
Indices: 768508--768560 Score: 63
Period size: 19 Copynumber: 2.7 Consensus size: 20
768498 ACTTATTATA
768508 TTAAAAAAATTACTAACTTC
1 TTAAAAAAATTACTAACTTC
* * *
768528 TTAAAAAAACTA-TTACTTT
1 TTAAAAAAATTACTAACTTC
*
768547 TTTAAAAAATTACT
1 TTAAAAAAATTACT
768561 CATATATAAT
Statistics
Matches: 27, Mismatches: 5, Indels: 2
0.79 0.15 0.06
Matches are distributed among these distances:
19 15 0.56
20 12 0.44
ACGTcount: A:0.49, C:0.11, G:0.00, T:0.40
Consensus pattern (20 bp):
TTAAAAAAATTACTAACTTC
Found at i:768545 original size:19 final size:21
Alignment explanation
Indices: 768508--768555 Score: 55
Period size: 20 Copynumber: 2.4 Consensus size: 21
768498 ACTTATTATA
*
768508 TTAAAAAAATTACTAAC-TTC
1 TTAAAAAAACTACTAACTTTC
* *
768528 TTAAAAAAACTA-TTACTTTT
1 TTAAAAAAACTACTAACTTTC
768548 TTAAAAAA
1 TTAAAAAA
768556 TTACTCATAT
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
19 3 0.12
20 21 0.88
ACGTcount: A:0.52, C:0.10, G:0.00, T:0.38
Consensus pattern (21 bp):
TTAAAAAAACTACTAACTTTC
Found at i:769909 original size:20 final size:20
Alignment explanation
Indices: 769851--769909 Score: 50
Period size: 20 Copynumber: 2.9 Consensus size: 20
769841 AATTATTTTT
* *
769851 AATTATATATTTTATAATTAA
1 AATTAAATATTTTA-AATAAA
769872 AA-TAAAT-TTATTAAAAATAAA
1 AATTAAATATT-TT--AAATAAA
769893 AATTAAATATTTTAAAT
1 AATTAAATATTTTAAAT
769910 TTATTTTATT
Statistics
Matches: 31, Mismatches: 2, Indels: 11
0.70 0.05 0.25
Matches are distributed among these distances:
19 2 0.06
20 10 0.32
21 9 0.29
22 8 0.26
23 2 0.06
ACGTcount: A:0.56, C:0.00, G:0.00, T:0.44
Consensus pattern (20 bp):
AATTAAATATTTTAAATAAA
Found at i:769931 original size:24 final size:24
Alignment explanation
Indices: 769903--769954 Score: 79
Period size: 24 Copynumber: 2.2 Consensus size: 24
769893 AATTAAATAT
*
769903 TTTAAATTTATTTTATTATTA-TAA
1 TTTAAATTTA-TTTAATATTATTAA
769927 TTTAAATTTATTTAATATTATTAA
1 TTTAAATTTATTTAATATTATTAA
769951 TTTA
1 TTTA
769955 TGATATAAAA
Statistics
Matches: 26, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
23 9 0.35
24 17 0.65
ACGTcount: A:0.38, C:0.00, G:0.00, T:0.62
Consensus pattern (24 bp):
TTTAAATTTATTTAATATTATTAA
Found at i:770780 original size:16 final size:16
Alignment explanation
Indices: 770759--770789 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
770749 TTAAAAACCA
*
770759 TAATTAATTTAATTTT
1 TAATTAATTAAATTTT
770775 TAATTAATTAAATTT
1 TAATTAATTAAATTT
770790 ATGTGTTACT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.42, C:0.00, G:0.00, T:0.58
Consensus pattern (16 bp):
TAATTAATTAAATTTT
Found at i:772716 original size:13 final size:14
Alignment explanation
Indices: 772684--772713 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
772674 ATTTAACTTT
*
772684 AAATTTAATTTTAA
1 AAATATAATTTTAA
772698 AAATATAATTTTAA
1 AAATATAATTTTAA
772712 AA
1 AA
772714 TATTTTCAAT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.57, C:0.00, G:0.00, T:0.43
Consensus pattern (14 bp):
AAATATAATTTTAA
Found at i:773886 original size:16 final size:17
Alignment explanation
Indices: 773854--773895 Score: 52
Period size: 16 Copynumber: 2.6 Consensus size: 17
773844 AATAAAATAT
*
773854 TTATT-TTTTGTTAAAA
1 TTATTATTTTATTAAAA
773870 TTATTATTTTATT-AAA
1 TTATTATTTTATTAAAA
*
773886 TTAATATTTT
1 TTATTATTTT
773896 TAAAATAAAA
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
16 17 0.74
17 6 0.26
ACGTcount: A:0.33, C:0.00, G:0.02, T:0.64
Consensus pattern (17 bp):
TTATTATTTTATTAAAA
Found at i:774613 original size:2 final size:2
Alignment explanation
Indices: 774565--774598 Score: 68
Period size: 2 Copynumber: 17.0 Consensus size: 2
774555 TTGTTTAAAA
774565 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG
1 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG
774599 GAATCGACGG
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 32 1.00
ACGTcount: A:0.50, C:0.00, G:0.50, T:0.00
Consensus pattern (2 bp):
AG
Found at i:775147 original size:12 final size:11
Alignment explanation
Indices: 775130--775315 Score: 51
Period size: 11 Copynumber: 17.9 Consensus size: 11
775120 TTTATTTATG
775130 ATAATACTAAAT
1 ATAATA-TAAAT
*
775142 ATAATATAAAA
1 ATAATATAAAT
* *
775153 AAAATTAAAAAT
1 ATAA-TATAAAT
775165 ATAATATAAA-
1 ATAATATAAAT
775175 AT-A-A-AAA-
1 ATAATATAAAT
*
775182 ATAATATGAAT
1 ATAATATAAAT
*
775193 AT-AT-TATAT
1 ATAATATAAAT
*
775202 ATAA-ATGAAT
1 ATAATATAAAT
**
775212 ATTTTA-AAAT
1 ATAATATAAAT
*
775222 -TTATAT-AAT
1 ATAATATAAAT
*
775231 ATAATTATTAAT
1 ATAA-TATAAAT
*
775243 ATATTA-AAAT
1 ATAATATAAAT
*
775253 -TTATATAAAT
1 ATAATATAAAT
* *
775263 ATAAAAT-ATT
1 ATAATATAAAT
* * *
775273 TTAAATATTATT
1 AT-AATATAAAT
775285 ATAATAT-AAT
1 ATAATATAAAT
* *
775295 AAAATATAAAA
1 ATAATATAAAT
*
775306 ATATTATAAA
1 ATAATATAAA
775316 AATTTACAAA
Statistics
Matches: 126, Mismatches: 31, Indels: 35
0.66 0.16 0.18
Matches are distributed among these distances:
7 5 0.04
8 2 0.02
9 17 0.13
10 35 0.28
11 43 0.34
12 24 0.19
ACGTcount: A:0.60, C:0.01, G:0.01, T:0.39
Consensus pattern (11 bp):
ATAATATAAAT
Found at i:775167 original size:18 final size:19
Alignment explanation
Indices: 775144--775184 Score: 57
Period size: 19 Copynumber: 2.2 Consensus size: 19
775134 TACTAAATAT
*
775144 AATATAA-AAAAAATTAAA
1 AATATAATAAAAAATAAAA
*
775162 AATATAATATAAAATAAAA
1 AATATAATAAAAAATAAAA
775181 AATA
1 AATA
775185 ATATGAATAT
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
18 7 0.35
19 13 0.65
ACGTcount: A:0.76, C:0.00, G:0.00, T:0.24
Consensus pattern (19 bp):
AATATAATAAAAAATAAAA
Found at i:775193 original size:23 final size:22
Alignment explanation
Indices: 775138--775195 Score: 73
Period size: 23 Copynumber: 2.5 Consensus size: 22
775128 TGATAATACT
775138 AAATATAATATAAAAAAAATTAA
1 AAATATAATATAAAAAAAA-TAA
775161 AAATATAATATAAAATAAAA-AA
1 AAATATAATATAAAA-AAAATAA
*
775183 TAATATGAATATA
1 AAATAT-AATATA
775196 TTATATATAA
Statistics
Matches: 32, Mismatches: 1, Indels: 4
0.86 0.03 0.11
Matches are distributed among these distances:
22 7 0.22
23 21 0.66
24 4 0.12
ACGTcount: A:0.71, C:0.00, G:0.02, T:0.28
Consensus pattern (22 bp):
AAATATAATATAAAAAAAATAA
Found at i:775233 original size:31 final size:30
Alignment explanation
Indices: 775192--775297 Score: 103
Period size: 31 Copynumber: 3.5 Consensus size: 30
775182 ATAATATGAA
*
775192 TATATTATATATAAATGAATATTTTAAAATT
1 TATATAATATATAAAT-AATATTTTAAAATT
* * *
775223 TATATAATATAATTATTAATATATTAAAATT
1 TATATAATAT-ATAAATAATATTTTAAAATT
775254 TATATAA-ATAT-AA-AATATTTT-AAATAT
1 TATATAATATATAAATAATATTTTAAAAT-T
775281 TATTATAATATAATAAA
1 TA-TATAATAT-ATAAA
775298 ATATAAAAAT
Statistics
Matches: 63, Mismatches: 6, Indels: 12
0.78 0.07 0.15
Matches are distributed among these distances:
26 4 0.06
27 10 0.16
28 6 0.10
29 4 0.06
30 4 0.06
31 31 0.49
32 4 0.06
ACGTcount: A:0.53, C:0.00, G:0.01, T:0.46
Consensus pattern (30 bp):
TATATAATATATAAATAATATTTTAAAATT
Found at i:775285 original size:37 final size:37
Alignment explanation
Indices: 775209--775315 Score: 104
Period size: 31 Copynumber: 3.1 Consensus size: 37
775199 TATATAAATG
*
775209 AATATT-TTAAAATTTATAT-AATAT--AAT-TATT-
1 AATATTATTAAAATTTATATAAATATAAAATATTTTA
775240 AATA-TATTAAAATTTATATAAATATAAAATATTTTA
1 AATATTATTAAAATTTATATAAATATAAAATATTTTA
* * *
775276 AATATTATTATAATATA-ATAAAATATAAAAATATTATA
1 AATATTATTAAAATTTATAT-AAATAT-AAAATATTTTA
775314 AA
1 AA
775316 AATTTACAAA
Statistics
Matches: 63, Mismatches: 4, Indels: 11
0.81 0.05 0.14
Matches are distributed among these distances:
30 1 0.02
31 17 0.27
32 5 0.08
34 3 0.05
35 3 0.05
36 6 0.10
37 16 0.25
38 12 0.19
ACGTcount: A:0.56, C:0.00, G:0.00, T:0.44
Consensus pattern (37 bp):
AATATTATTAAAATTTATATAAATATAAAATATTTTA
Found at i:775302 original size:10 final size:9
Alignment explanation
Indices: 775240--775316 Score: 50
Period size: 10 Copynumber: 8.2 Consensus size: 9
775230 TATAATTATT
775240 AATATATTAA
1 AATATA-TAA
* *
775250 AATTTATAT
1 AATATATAA
775259 AA-ATATAA
1 AATATATAA
* *
775267 AATATTTTA
1 AATATATAA
*
775276 AATATTATTAT
1 AATA-TA-TAA
775287 AATATAATAA
1 AATAT-ATAA
775297 AATATA-AA
1 AATATATAA
775305 AATATTATAA
1 AATA-TATAA
775315 AA
1 AA
775317 ATTTACAAAC
Statistics
Matches: 51, Mismatches: 10, Indels: 12
0.70 0.14 0.16
Matches are distributed among these distances:
8 12 0.24
9 15 0.29
10 18 0.35
11 6 0.12
ACGTcount: A:0.60, C:0.00, G:0.00, T:0.40
Consensus pattern (9 bp):
AATATATAA
Found at i:775576 original size:18 final size:18
Alignment explanation
Indices: 775526--775581 Score: 50
Period size: 18 Copynumber: 3.3 Consensus size: 18
775516 ATAATTATTT
*
775526 TTAAAATTTATTT-AATA
1 TTAAATTTTATTTAAATA
775543 -TAAA--TTA-TTAATATA
1 TTAAATTTTATTTAA-ATA
775558 TTAAATTTTATTTAAATA
1 TTAAATTTTATTTAAATA
*
775576 TAAAAT
1 TTAAAT
775582 ATTTTAAATA
Statistics
Matches: 32, Mismatches: 1, Indels: 11
0.73 0.02 0.25
Matches are distributed among these distances:
13 2 0.06
14 4 0.12
15 3 0.09
16 8 0.25
18 11 0.34
19 4 0.12
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (18 bp):
TTAAATTTTATTTAAATA
Found at i:775596 original size:32 final size:32
Alignment explanation
Indices: 775527--775596 Score: 81
Period size: 32 Copynumber: 2.2 Consensus size: 32
775517 TAATTATTTT
* *
775527 TAAAA-TTTATTTAATATAAATTATTAATATA
1 TAAAATTTTATTTAATATAAAATATTAATAAA
* *
775558 TTAAATTTTATTTAAATATAAAATATT-TTAAA
1 TAAAATTTTATTT-AATATAAAATATTAATAAA
775590 TAAAATT
1 TAAAATT
775597 ATAAAATGAC
Statistics
Matches: 32, Mismatches: 5, Indels: 3
0.80 0.12 0.08
Matches are distributed among these distances:
31 4 0.12
32 16 0.50
33 12 0.38
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (32 bp):
TAAAATTTTATTTAATATAAAATATTAATAAA
Found at i:775785 original size:18 final size:18
Alignment explanation
Indices: 775737--775791 Score: 58
Period size: 18 Copynumber: 3.0 Consensus size: 18
775727 GGCTTACACC
775737 TAATTTTAT-AATAGATT
1 TAATTTTATAAATAGATT
* **
775754 TATATTTGATTAAATATTTT
1 TA-ATTTTA-TAAATAGATT
775774 TAATTTTATAAATAGATT
1 TAATTTTATAAATAGATT
775792 AATAATATAT
Statistics
Matches: 29, Mismatches: 6, Indels: 5
0.73 0.15 0.12
Matches are distributed among these distances:
17 2 0.07
18 13 0.45
19 6 0.21
20 8 0.28
ACGTcount: A:0.40, C:0.00, G:0.05, T:0.55
Consensus pattern (18 bp):
TAATTTTATAAATAGATT
Found at i:781484 original size:20 final size:21
Alignment explanation
Indices: 781447--781485 Score: 53
Period size: 20 Copynumber: 1.9 Consensus size: 21
781437 AACCTATCTC
*
781447 ATATTATTATTTAAAATTTTA
1 ATATTATTATTGAAAATTTTA
*
781468 ATATT-TTATTGATAATTT
1 ATATTATTATTGAAAATTT
781486 ATTAATACAA
Statistics
Matches: 16, Mismatches: 2, Indels: 1
0.84 0.11 0.05
Matches are distributed among these distances:
20 11 0.69
21 5 0.31
ACGTcount: A:0.38, C:0.00, G:0.03, T:0.59
Consensus pattern (21 bp):
ATATTATTATTGAAAATTTTA
Found at i:782297 original size:36 final size:36
Alignment explanation
Indices: 782250--782341 Score: 166
Period size: 36 Copynumber: 2.6 Consensus size: 36
782240 TGTTTGAGCT
* *
782250 AAATAAGGGAGATAATAAAGAGACATGAAAGCCAGG
1 AAATAAGGGAGACAATAAAGAGACATGAAAGCAAGG
782286 AAATAAGGGAGACAATAAAGAGACATGAAAGCAAGG
1 AAATAAGGGAGACAATAAAGAGACATGAAAGCAAGG
782322 AAATAAGGGAGACAATAAAG
1 AAATAAGGGAGACAATAAAG
782342 CTCTAGTCCA
Statistics
Matches: 54, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
36 54 1.00
ACGTcount: A:0.55, C:0.08, G:0.27, T:0.10
Consensus pattern (36 bp):
AAATAAGGGAGACAATAAAGAGACATGAAAGCAAGG
Found at i:783996 original size:2 final size:2
Alignment explanation
Indices: 783989--784032 Score: 88
Period size: 2 Copynumber: 22.0 Consensus size: 2
783979 TGACAGATAA
783989 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
784031 AT
1 AT
784033 GTGTGTGTGT
Statistics
Matches: 42, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 42 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:784037 original size:2 final size:2
Alignment explanation
Indices: 784032--784068 Score: 65
Period size: 2 Copynumber: 18.5 Consensus size: 2
784022 TATATATATA
*
784032 TG TG TG TG TG TG TG TG TG TG TG TG CG TG TG TG TG TG T
1 TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG T
784069 TTTTCAACTG
Statistics
Matches: 33, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
2 33 1.00
ACGTcount: A:0.00, C:0.03, G:0.49, T:0.49
Consensus pattern (2 bp):
TG
Found at i:785190 original size:26 final size:24
Alignment explanation
Indices: 785161--785225 Score: 67
Period size: 26 Copynumber: 2.5 Consensus size: 24
785151 TTATTTAATA
**
785161 AAATATAATTTTTATTTTTATATTTT
1 AAAT-TAATTTTTATACTTA-ATTTT
785187 AAATTTAATTATTTATACTTAATTTT
1 AAA-TTAATT-TTTATACTTAATTTT
785213 AAATTAAATTTTT
1 AAATT-AATTTTT
785226 TAATATTACT
Statistics
Matches: 34, Mismatches: 2, Indels: 7
0.79 0.05 0.16
Matches are distributed among these distances:
25 5 0.15
26 20 0.59
27 9 0.26
ACGTcount: A:0.38, C:0.02, G:0.00, T:0.60
Consensus pattern (24 bp):
AAATTAATTTTTATACTTAATTTT
Found at i:785213 original size:20 final size:20
Alignment explanation
Indices: 785166--785214 Score: 55
Period size: 20 Copynumber: 2.5 Consensus size: 20
785156 TAATAAAATA
* *
785166 TAATTTTTATTTTTATATTT
1 TAATTTTAATTTTTATATCT
*
785186 TAAATTTAATTATTTATA-CT
1 TAATTTTAATT-TTTATATCT
785206 TAATTTTAA
1 TAATTTTAA
785215 ATTAAATTTT
Statistics
Matches: 24, Mismatches: 4, Indels: 2
0.80 0.13 0.07
Matches are distributed among these distances:
20 18 0.75
21 6 0.25
ACGTcount: A:0.35, C:0.02, G:0.00, T:0.63
Consensus pattern (20 bp):
TAATTTTAATTTTTATATCT
Found at i:789615 original size:10 final size:10
Alignment explanation
Indices: 789600--789624 Score: 50
Period size: 10 Copynumber: 2.5 Consensus size: 10
789590 ATAATATATA
789600 TTTTATTTAT
1 TTTTATTTAT
789610 TTTTATTTAT
1 TTTTATTTAT
789620 TTTTA
1 TTTTA
789625 AAATATATTT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 15 1.00
ACGTcount: A:0.20, C:0.00, G:0.00, T:0.80
Consensus pattern (10 bp):
TTTTATTTAT
Found at i:789873 original size:17 final size:17
Alignment explanation
Indices: 789836--789881 Score: 53
Period size: 16 Copynumber: 2.8 Consensus size: 17
789826 AATCAAGAAA
*
789836 TATAAATTTTTT--TTT
1 TATAATTTTTTTAATTT
789851 TATAATTCTTTTTAATTT
1 TATAATT-TTTTTAATTT
789869 T-TAATTTTTTTAA
1 TATAATTTTTTTAA
789882 AAAAGAGAAG
Statistics
Matches: 27, Mismatches: 1, Indels: 5
0.82 0.03 0.15
Matches are distributed among these distances:
15 6 0.22
16 12 0.44
17 5 0.19
18 4 0.15
ACGTcount: A:0.28, C:0.02, G:0.00, T:0.70
Consensus pattern (17 bp):
TATAATTTTTTTAATTT
Found at i:790082 original size:19 final size:17
Alignment explanation
Indices: 790051--790111 Score: 59
Period size: 18 Copynumber: 3.4 Consensus size: 17
790041 TTTAAATACG
*
790051 ATAAAAAAATAATAATAT
1 ATAATAAAATAATAA-AT
*
790069 ATAATAAATTTAATAAAATT
1 ATAATAAA-ATAAT-AAA-T
*
790089 AAAATAAAATAATAAAT
1 ATAATAAAATAATAAAT
790106 ATAATA
1 ATAATA
790112 TTTTATATTT
Statistics
Matches: 35, Mismatches: 5, Indels: 7
0.74 0.11 0.15
Matches are distributed among these distances:
17 6 0.17
18 10 0.29
19 9 0.26
20 10 0.29
ACGTcount: A:0.69, C:0.00, G:0.00, T:0.31
Consensus pattern (17 bp):
ATAATAAAATAATAAAT
Found at i:790520 original size:3 final size:3
Alignment explanation
Indices: 790514--790543 Score: 60
Period size: 3 Copynumber: 10.0 Consensus size: 3
790504 TACTACTACA
790514 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
790544 CTTATACTAA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 27 1.00
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (3 bp):
AAT
Found at i:790703 original size:11 final size:12
Alignment explanation
Indices: 790683--790713 Score: 55
Period size: 11 Copynumber: 2.7 Consensus size: 12
790673 TGATTCAGAC
790683 TTTCTTTTCTTT
1 TTTCTTTTCTTT
790695 TTT-TTTTCTTT
1 TTTCTTTTCTTT
790706 TTTCTTTT
1 TTTCTTTT
790714 ATTTATTTAT
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
11 11 0.61
12 7 0.39
ACGTcount: A:0.00, C:0.13, G:0.00, T:0.87
Consensus pattern (12 bp):
TTTCTTTTCTTT
Found at i:791051 original size:14 final size:15
Alignment explanation
Indices: 791021--791064 Score: 54
Period size: 14 Copynumber: 2.9 Consensus size: 15
791011 GTTATGAAAA
791021 AAAATTATAAATATT
1 AAAATTATAAATATT
*
791036 AAAATT-TAAATTTT
1 AAAATTATAAATATT
*
791050 AAACTTATTAAATAT
1 AAAATTA-TAAATAT
791065 CATTTGATTA
Statistics
Matches: 24, Mismatches: 3, Indels: 3
0.80 0.10 0.10
Matches are distributed among these distances:
14 12 0.50
15 6 0.25
16 6 0.25
ACGTcount: A:0.55, C:0.02, G:0.00, T:0.43
Consensus pattern (15 bp):
AAAATTATAAATATT
Found at i:794734 original size:14 final size:13
Alignment explanation
Indices: 794708--794747 Score: 55
Period size: 14 Copynumber: 3.1 Consensus size: 13
794698 ATTTTGATTC
794708 AAAT-TAAATTTT
1 AAATATAAATTTT
794720 AAATATAATATTTT
1 AAATATAA-ATTTT
*
794734 AAATTTAAATTTT
1 AAATATAAATTTT
794747 A
1 A
794748 TCTAATTAAA
Statistics
Matches: 25, Mismatches: 1, Indels: 3
0.86 0.03 0.10
Matches are distributed among these distances:
12 4 0.16
13 9 0.36
14 12 0.48
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (13 bp):
AAATATAAATTTT
Found at i:794767 original size:22 final size:21
Alignment explanation
Indices: 794742--794794 Score: 70
Period size: 21 Copynumber: 2.5 Consensus size: 21
794732 TTAAATTTAA
*
794742 ATTTTATCTAATTAAAATTATT
1 ATTTTAT-TAATAAAAATTATT
*
794764 ATTTAATTAATAAAAATTATT
1 ATTTTATTAATAAAAATTATT
*
794785 TTTTTATTAA
1 ATTTTATTAA
794795 ATTTAAATAA
Statistics
Matches: 27, Mismatches: 4, Indels: 1
0.84 0.12 0.03
Matches are distributed among these distances:
21 21 0.78
22 6 0.22
ACGTcount: A:0.43, C:0.02, G:0.00, T:0.55
Consensus pattern (21 bp):
ATTTTATTAATAAAAATTATT
Found at i:794770 original size:17 final size:16
Alignment explanation
Indices: 794735--794773 Score: 51
Period size: 17 Copynumber: 2.4 Consensus size: 16
794725 TAATATTTTA
*
794735 AATTTAAATTTTATCT
1 AATTAAAATTTTATCT
*
794751 AATTAAAATTATTATTT
1 AATTAAAATT-TTATCT
794768 AATTAA
1 AATTAA
794774 TAAAAATTAT
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
16 9 0.45
17 11 0.55
ACGTcount: A:0.46, C:0.03, G:0.00, T:0.51
Consensus pattern (16 bp):
AATTAAAATTTTATCT
Found at i:794874 original size:21 final size:22
Alignment explanation
Indices: 794846--794909 Score: 67
Period size: 23 Copynumber: 2.7 Consensus size: 22
794836 TATTTTAATA
794846 TATTTTAAATAATAAAATAAAT
1 TATTTTAAATAATAAAATAAAT
*
794868 T-TTTTAAATTTAATAAATTAAAT
1 TATTTTAAA--TAATAAAATAAAT
794891 TAAATTTTAAATAAATAAA
1 T--ATTTTAAAT-AATAAA
794910 TTTTTATTAT
Statistics
Matches: 35, Mismatches: 1, Indels: 9
0.78 0.02 0.20
Matches are distributed among these distances:
21 7 0.20
22 1 0.03
23 13 0.37
24 1 0.03
25 6 0.17
26 7 0.20
ACGTcount: A:0.56, C:0.00, G:0.00, T:0.44
Consensus pattern (22 bp):
TATTTTAAATAATAAAATAAAT
Found at i:794909 original size:20 final size:19
Alignment explanation
Indices: 794871--794911 Score: 57
Period size: 20 Copynumber: 2.1 Consensus size: 19
794861 AATAAATTTT
794871 TTAAATTTAATAAATTAAA
1 TTAAATTTAATAAATTAAA
794890 TTAAATTTTAAATAAA-TAAA
1 TTAAA-TTT-AATAAATTAAA
794910 TT
1 TT
794912 TTTATTATTT
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
19 5 0.25
20 9 0.45
21 6 0.30
ACGTcount: A:0.56, C:0.00, G:0.00, T:0.44
Consensus pattern (19 bp):
TTAAATTTAATAAATTAAA
Found at i:794915 original size:16 final size:17
Alignment explanation
Indices: 794871--794913 Score: 54
Period size: 15 Copynumber: 2.5 Consensus size: 17
794861 AATAAATTTT
794871 TTAAATTTAATAAATTAAA
1 TTAAATTT--TAAATTAAA
794890 TTAAATTTTAAA-TAAA
1 TTAAATTTTAAATTAAA
794906 -TAAATTTT
1 TTAAATTTT
794914 TATTATTTAA
Statistics
Matches: 24, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
15 8 0.33
16 4 0.17
17 4 0.17
19 8 0.33
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (17 bp):
TTAAATTTTAAATTAAA
Found at i:795330 original size:32 final size:33
Alignment explanation
Indices: 795259--795347 Score: 126
Period size: 33 Copynumber: 2.7 Consensus size: 33
795249 ACATAAAAAA
*
795259 ATTAAAATATGATATAATATAAATATATAAATAT
1 ATTAAAAT-TTATATAATATAAATATATAAATAT
* *
795293 TTTAAAATTTATATAATATAAAT-TATTAATAT
1 ATTAAAATTTATATAATATAAATATATAAATAT
795325 ATTAAAATTTATATAAATATAAA
1 ATTAAAATTTATAT-AATATAAA
795348 ATAATTTAAA
Statistics
Matches: 50, Mismatches: 4, Indels: 3
0.88 0.07 0.05
Matches are distributed among these distances:
32 21 0.42
33 22 0.44
34 7 0.14
ACGTcount: A:0.56, C:0.00, G:0.01, T:0.43
Consensus pattern (33 bp):
ATTAAAATTTATATAATATAAATATATAAATAT
Found at i:795345 original size:20 final size:19
Alignment explanation
Indices: 795282--795349 Score: 62
Period size: 17 Copynumber: 3.9 Consensus size: 19
795272 ATAATATAAA
*
795282 TATATAAATATTTTAAAATT
1 TATAT-AATATATTAAAATT
795302 TATAT-A-ATA-T-AAA-T
1 TATATAATATATTAAAATT
795316 TAT-TAATATATTAAAATT
1 TATATAATATATTAAAATT
795334 TATATAA-ATA-TAAAAT
1 TATATAATATATTAAAAT
795350 AATTTAAAAA
Statistics
Matches: 41, Mismatches: 1, Indels: 15
0.72 0.02 0.26
Matches are distributed among these distances:
13 1 0.02
14 5 0.12
15 6 0.15
16 2 0.05
17 11 0.27
18 8 0.20
19 3 0.07
20 5 0.12
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (19 bp):
TATATAATATATTAAAATT
Found at i:795347 original size:17 final size:17
Alignment explanation
Indices: 795295--795349 Score: 64
Period size: 17 Copynumber: 3.4 Consensus size: 17
795285 ATAAATATTT
795295 TAAAATTTATAT-AATA
1 TAAAATTTATATAAATA
795311 T-AAA-TTAT-TAATATA
1 TAAAATTTATATAA-ATA
795326 TTAAAATTTATATAAATA
1 -TAAAATTTATATAAATA
795344 TAAAAT
1 TAAAAT
795350 AATTTAAAAA
Statistics
Matches: 33, Mismatches: 0, Indels: 11
0.75 0.00 0.25
Matches are distributed among these distances:
13 1 0.03
14 5 0.15
15 6 0.18
16 2 0.06
17 9 0.27
18 7 0.21
19 3 0.09
ACGTcount: A:0.56, C:0.00, G:0.00, T:0.44
Consensus pattern (17 bp):
TAAAATTTATATAAATA
Found at i:795427 original size:28 final size:28
Alignment explanation
Indices: 795303--795429 Score: 75
Period size: 27 Copynumber: 4.6 Consensus size: 28
795293 TTTAAAATTT
* *
795303 ATATAATATAAAT-TATTAA-TATATTA
1 ATATAATAAAAATATATAAATTATATTA
* * * *
795329 AAATTTATATAAATATA-AAATAAT-TTAA
1 ATA-TAATAAAAATATATAAATTATATT-A
* * *
795357 AAATAATTATAATATGATAAATTATATTA
1 ATATAATAAAAATAT-ATAAATTATATTA
**
795386 ATATAATATGAATATATAAATTAT-TTA
1 ATATAATAAAAATATATAAATTATATTA
*
795413 ATCTACATAAAAATATA
1 ATATA-ATAAAAATATA
795430 CTATGCAAGA
Statistics
Matches: 77, Mismatches: 16, Indels: 14
0.72 0.15 0.13
Matches are distributed among these distances:
26 2 0.03
27 28 0.36
28 27 0.35
29 18 0.23
30 2 0.03
ACGTcount: A:0.56, C:0.02, G:0.02, T:0.41
Consensus pattern (28 bp):
ATATAATAAAAATATATAAATTATATTA
Found at i:795428 original size:26 final size:27
Alignment explanation
Indices: 795373--795429 Score: 64
Period size: 28 Copynumber: 2.1 Consensus size: 27
795363 TTATAATATG
*
795373 ATAAATTATATTAATATAATATGAATAT
1 ATAAATTATATTAATATAATA-GAAAAT
*
795401 ATAAATTAT-TTAATCTACATA-AAAAT
1 ATAAATTATATTAATATA-ATAGAAAAT
795427 ATA
1 ATA
795430 CTATGCAAGA
Statistics
Matches: 26, Mismatches: 2, Indels: 4
0.81 0.06 0.12
Matches are distributed among these distances:
26 7 0.27
27 7 0.27
28 12 0.46
ACGTcount: A:0.54, C:0.04, G:0.02, T:0.40
Consensus pattern (27 bp):
ATAAATTATATTAATATAATAGAAAAT
Found at i:796085 original size:21 final size:21
Alignment explanation
Indices: 796044--796085 Score: 66
Period size: 21 Copynumber: 2.0 Consensus size: 21
796034 AATAAAATCA
*
796044 AGATAGAGAGAGTCTTCCAAT
1 AGATAGAGAGAGTATTCCAAT
*
796065 AGATAGAGAGAGTATTTCAAT
1 AGATAGAGAGAGTATTCCAAT
796086 TGATTGTCTT
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.40, C:0.10, G:0.24, T:0.26
Consensus pattern (21 bp):
AGATAGAGAGAGTATTCCAAT
Found at i:796893 original size:2 final size:2
Alignment explanation
Indices: 796886--796931 Score: 56
Period size: 2 Copynumber: 23.0 Consensus size: 2
796876 TTTTGTACAC
* ** *
796886 TA TA TA TA TA CA CG TA TA TA TA TA TA TA CA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
796928 TA TA
1 TA TA
796932 GAGAGAGAGA
Statistics
Matches: 38, Mismatches: 6, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
2 38 1.00
ACGTcount: A:0.48, C:0.07, G:0.02, T:0.43
Consensus pattern (2 bp):
TA
Found at i:796928 original size:16 final size:16
Alignment explanation
Indices: 796886--796929 Score: 70
Period size: 16 Copynumber: 2.8 Consensus size: 16
796876 TTTTGTACAC
* *
796886 TATATATATACACGTA
1 TATATATATATACATA
796902 TATATATATATACATA
1 TATATATATATACATA
796918 TATATATATATA
1 TATATATATATA
796930 TAGAGAGAGA
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 26 1.00
ACGTcount: A:0.48, C:0.07, G:0.02, T:0.43
Consensus pattern (16 bp):
TATATATATATACATA
Found at i:796930 original size:18 final size:18
Alignment explanation
Indices: 796886--796931 Score: 74
Period size: 18 Copynumber: 2.6 Consensus size: 18
796876 TTTTGTACAC
*
796886 TATATATATACACGTATA
1 TATATATATACACATATA
*
796904 TATATATATACATATATA
1 TATATATATACACATATA
796922 TATATATATA
1 TATATATATA
796932 GAGAGAGAGA
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
18 26 1.00
ACGTcount: A:0.48, C:0.07, G:0.02, T:0.43
Consensus pattern (18 bp):
TATATATATACACATATA
Found at i:798128 original size:24 final size:24
Alignment explanation
Indices: 798101--798146 Score: 65
Period size: 24 Copynumber: 1.9 Consensus size: 24
798091 TGATTTTTTT
* *
798101 ATTATTAAGATTAAATTTTAAAAA
1 ATTATAAAGATTAAAATTTAAAAA
*
798125 ATTATAAATATTAAAATTTAAA
1 ATTATAAAGATTAAAATTTAAA
798147 TTTATTAAAT
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
24 19 1.00
ACGTcount: A:0.57, C:0.00, G:0.02, T:0.41
Consensus pattern (24 bp):
ATTATAAAGATTAAAATTTAAAAA
Found at i:798444 original size:41 final size:40
Alignment explanation
Indices: 798373--798475 Score: 124
Period size: 41 Copynumber: 2.6 Consensus size: 40
798363 TATTTATATG
*
798373 TATTTAAATTTAATTTA-AGTA-AAATATAAAAATTTAA-A
1 TATTTAAATTT-ATTTATATTATAAATATAAAAATTTAACA
*
798411 TTTTATTTAAATTTATTTATTTTATAAAT-TAAAAATTTAACA
1 ---TATTTAAATTTATTTATATTATAAATATAAAAATTTAACA
798453 TATTTAAATTTATTTATATTATA
1 TATTTAAATTTATTTATATTATA
798476 TTTTTTATTT
Statistics
Matches: 56, Mismatches: 3, Indels: 8
0.84 0.04 0.12
Matches are distributed among these distances:
39 22 0.39
40 5 0.09
41 24 0.43
42 5 0.09
ACGTcount: A:0.47, C:0.01, G:0.01, T:0.51
Consensus pattern (40 bp):
TATTTAAATTTATTTATATTATAAATATAAAAATTTAACA
Found at i:798489 original size:21 final size:23
Alignment explanation
Indices: 798455--798508 Score: 67
Period size: 21 Copynumber: 2.4 Consensus size: 23
798445 ATTTAACATA
* * *
798455 TTTAAATTTATTTATATTATATT
1 TTTATATTTATTTAAAATATATT
798478 TTT-TATTT-TTTAAAATATATT
1 TTTATATTTATTTAAAATATATT
798499 TTTATATTTA
1 TTTATATTTA
798509 CATATTTTTT
Statistics
Matches: 26, Mismatches: 3, Indels: 4
0.79 0.09 0.12
Matches are distributed among these distances:
21 14 0.54
22 9 0.35
23 3 0.12
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (23 bp):
TTTATATTTATTTAAAATATATT
Found at i:798515 original size:16 final size:16
Alignment explanation
Indices: 798492--798535 Score: 61
Period size: 17 Copynumber: 2.6 Consensus size: 16
798482 ATTTTTTAAA
798492 ATATATTTTTATATTTAC
1 ATAT-TTTTTATA-TTAC
798510 ATATTTTTTATATTAC
1 ATATTTTTTATATTAC
798526 ATATATTTTT
1 ATAT-TTTTT
798536 TTTTTTATAT
Statistics
Matches: 25, Mismatches: 0, Indels: 3
0.89 0.00 0.11
Matches are distributed among these distances:
16 8 0.32
17 13 0.52
18 4 0.16
ACGTcount: A:0.32, C:0.05, G:0.00, T:0.64
Consensus pattern (16 bp):
ATATTTTTTATATTAC
Found at i:799364 original size:4 final size:4
Alignment explanation
Indices: 799355--799382 Score: 56
Period size: 4 Copynumber: 7.0 Consensus size: 4
799345 TCACACAGTA
799355 AAAT AAAT AAAT AAAT AAAT AAAT AAAT
1 AAAT AAAT AAAT AAAT AAAT AAAT AAAT
799383 TCTGAAAAAC
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 24 1.00
ACGTcount: A:0.75, C:0.00, G:0.00, T:0.25
Consensus pattern (4 bp):
AAAT
Found at i:799926 original size:38 final size:38
Alignment explanation
Indices: 799848--799927 Score: 99
Period size: 38 Copynumber: 2.1 Consensus size: 38
799838 ATTTAAATAT
* * * *
799848 AATTAATATAATATATTTAAATATAAATTTTTTTAAAA
1 AATTAATATAATATATTTAAATACAAATATTATGAAAA
*
799886 AATTAATATAATATATTT-AATACATATATTATGAACAA
1 AATTAATATAATATATTTAAATACAAATATTATGAA-AA
799924 AATT
1 AATT
799928 TCAACACGTT
Statistics
Matches: 36, Mismatches: 5, Indels: 2
0.84 0.12 0.05
Matches are distributed among these distances:
37 12 0.33
38 24 0.67
ACGTcount: A:0.53, C:0.03, G:0.01, T:0.44
Consensus pattern (38 bp):
AATTAATATAATATATTTAAATACAAATATTATGAAAA
Found at i:800221 original size:15 final size:15
Alignment explanation
Indices: 800180--800222 Score: 50
Period size: 16 Copynumber: 2.8 Consensus size: 15
800170 ATATGTATCA
*
800180 AAATTTATATAATTT
1 AAATTTAAATAATTT
* *
800195 AAATTATTAATATTTT
1 AAATT-TAAATAATTT
800211 AAATTTAAATAA
1 AAATTTAAATAA
800223 ATATATATAA
Statistics
Matches: 22, Mismatches: 5, Indels: 2
0.76 0.17 0.07
Matches are distributed among these distances:
15 10 0.45
16 12 0.55
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (15 bp):
AAATTTAAATAATTT
Found at i:800244 original size:12 final size:13
Alignment explanation
Indices: 800225--800276 Score: 54
Period size: 13 Copynumber: 4.1 Consensus size: 13
800215 TTAAATAAAT
*
800225 ATATATAATTTTA
1 ATATATAATTATA
800238 A-ATATAATTATA
1 ATATATAATTATA
* *
800250 ATATATAAATAAA
1 ATATATAATTATA
800263 ATATA-AATATATA
1 ATATATAAT-TATA
800276 A
1 A
800277 ATTATCAAAT
Statistics
Matches: 32, Mismatches: 5, Indels: 4
0.78 0.12 0.10
Matches are distributed among these distances:
12 13 0.41
13 19 0.59
ACGTcount: A:0.60, C:0.00, G:0.00, T:0.40
Consensus pattern (13 bp):
ATATATAATTATA
Found at i:800270 original size:6 final size:6
Alignment explanation
Indices: 800219--800273 Score: 53
Period size: 6 Copynumber: 9.5 Consensus size: 6
800209 TTAAATTTAA
* * *
800219 ATAAAT AT--AT ATAATT TTAAAT ATAATT ATAATAT ATAAAT A-AAAT
1 ATAAAT ATAAAT ATAAAT ATAAAT ATAAAT ATAA-AT ATAAAT ATAAAT
800265 ATAAAT ATA
1 ATAAAT ATA
800274 TAAATTATCA
Statistics
Matches: 39, Mismatches: 6, Indels: 8
0.74 0.11 0.15
Matches are distributed among these distances:
4 4 0.10
5 5 0.13
6 25 0.64
7 5 0.13
ACGTcount: A:0.60, C:0.00, G:0.00, T:0.40
Consensus pattern (6 bp):
ATAAAT
Found at i:800271 original size:19 final size:20
Alignment explanation
Indices: 800216--800278 Score: 78
Period size: 19 Copynumber: 3.2 Consensus size: 20
800206 ATTTTAAATT
*
800216 TAAATAAATATATATAAT-TT
1 TAAATAAA-ATATATAATATA
*
800236 TAAATATAAT-TATAATATA
1 TAAATAAAATATATAATATA
800255 TAAATAAAATATA-AATATA
1 TAAATAAAATATATAATATA
800274 TAAAT
1 TAAAT
800279 TATCAAATTT
Statistics
Matches: 38, Mismatches: 3, Indels: 5
0.83 0.07 0.11
Matches are distributed among these distances:
18 6 0.16
19 23 0.61
20 9 0.24
ACGTcount: A:0.60, C:0.00, G:0.00, T:0.40
Consensus pattern (20 bp):
TAAATAAAATATATAATATA
Found at i:801559 original size:19 final size:21
Alignment explanation
Indices: 801522--801561 Score: 66
Period size: 21 Copynumber: 2.0 Consensus size: 21
801512 AGATTTACTC
801522 AAAAATTAATTTTATTATTAA
1 AAAAATTAATTTTATTATTAA
801543 AAAAATT-ATTTTA-TATTAA
1 AAAAATTAATTTTATTATTAA
801562 TATTTATAAT
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
19 6 0.32
20 6 0.32
21 7 0.37
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (21 bp):
AAAAATTAATTTTATTATTAA
Found at i:802304 original size:6 final size:6
Alignment explanation
Indices: 802269--802315 Score: 59
Period size: 6 Copynumber: 8.7 Consensus size: 6
802259 ATATTTTTTA
802269 ATATTT ATA-TT AT-TTT AT-TTT ATA--T ATATTT ATATTT ATATTT
1 ATATTT ATATTT ATATTT ATATTT ATATTT ATATTT ATATTT ATATTT
802312 ATAT
1 ATAT
802316 AATATAAATT
Statistics
Matches: 37, Mismatches: 0, Indels: 8
0.82 0.00 0.18
Matches are distributed among these distances:
4 4 0.11
5 13 0.35
6 20 0.54
ACGTcount: A:0.34, C:0.00, G:0.00, T:0.66
Consensus pattern (6 bp):
ATATTT
Found at i:802333 original size:23 final size:23
Alignment explanation
Indices: 802277--802344 Score: 63
Period size: 21 Copynumber: 3.0 Consensus size: 23
802267 TAATATTTAT
* * *
802277 ATTATTTTATTTTATATATATTTAT
1 ATTATATTA-TTTATATA-ATATAA
802302 ATT-TA-TATTTATATAATATAA
1 ATTATATTATTTATATAATATAA
802323 ATTATATTA-TT-TATAATATAA
1 ATTATATTATTTATATAATATAA
802344 A
1 A
802345 AATAAATAAA
Statistics
Matches: 38, Mismatches: 3, Indels: 8
0.78 0.06 0.16
Matches are distributed among these distances:
21 18 0.47
22 12 0.32
23 4 0.11
24 1 0.03
25 3 0.08
ACGTcount: A:0.43, C:0.00, G:0.00, T:0.57
Consensus pattern (23 bp):
ATTATATTATTTATATAATATAA
Found at i:802341 original size:26 final size:26
Alignment explanation
Indices: 802301--802361 Score: 68
Period size: 26 Copynumber: 2.2 Consensus size: 26
802291 TATATATTTA
* * *
802301 TATTTATATTTATATAATATAAATTATAT
1 TATTTATA-ATATA-AAAATAAA-TAAAT
802330 TATTTATAATATAAAAATAAATAAAT
1 TATTTATAATATAAAAATAAATAAAT
802356 TATTTA
1 TATTTA
802362 ATTGAACTGA
Statistics
Matches: 29, Mismatches: 3, Indels: 3
0.83 0.09 0.09
Matches are distributed among these distances:
26 10 0.34
27 7 0.24
28 4 0.14
29 8 0.28
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (26 bp):
TATTTATAATATAAAAATAAATAAAT
Found at i:802347 original size:23 final size:20
Alignment explanation
Indices: 802304--802344 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 20
802294 ATATTTATAT
802304 TTATATTTATATAATATAAA
1 TTATATTTATATAATATAAA
*
802324 TTATATTATTTATAATATAAA
1 TTATATT-TATATAATATAAA
802345 AATAAATAAA
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
20 7 0.37
21 12 0.63
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (20 bp):
TTATATTTATATAATATAAA
Found at i:803286 original size:35 final size:34
Alignment explanation
Indices: 803223--803288 Score: 89
Period size: 36 Copynumber: 1.9 Consensus size: 34
803213 CTATCATTAT
* *
803223 TAAAAAAAAATTTATTTTTGAGAGAAATTATCCA
1 TAAAAAAAAATTAATTTTTGACAGAAATTATCCA
803257 TAAAAAAATTAATTAATTTTTGACA-AAATTAT
1 TAAAAAAA--AATTAATTTTTGACAGAAATTAT
803289 ACTTTTTTTG
Statistics
Matches: 28, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
34 8 0.29
35 7 0.25
36 13 0.46
ACGTcount: A:0.52, C:0.05, G:0.06, T:0.38
Consensus pattern (34 bp):
TAAAAAAAAATTAATTTTTGACAGAAATTATCCA
Found at i:804366 original size:23 final size:23
Alignment explanation
Indices: 804324--804367 Score: 61
Period size: 23 Copynumber: 1.9 Consensus size: 23
804314 CAGAAATGGT
* *
804324 TAATTTTTATGTATAAATTTAAA
1 TAATTTTTAAGTACAAATTTAAA
*
804347 TAATTTTTAAGTACATATTTA
1 TAATTTTTAAGTACAAATTTA
804368 TTTTTTAAAT
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
23 18 1.00
ACGTcount: A:0.41, C:0.02, G:0.05, T:0.52
Consensus pattern (23 bp):
TAATTTTTAAGTACAAATTTAAA
Found at i:805366 original size:32 final size:32
Alignment explanation
Indices: 805330--805390 Score: 79
Period size: 32 Copynumber: 1.9 Consensus size: 32
805320 AAAAACACCG
* *
805330 ACAAA-CAACCACAAACCCAACCCCCAAACCCA
1 ACAAACCAACCA-AAACACAACCCACAAACCCA
*
805362 ACAAACCCACCAAAACACAACCCACAAAC
1 ACAAACCAACCAAAACACAACCCACAAAC
805391 AAACGCACCA
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
32 20 0.80
33 5 0.20
ACGTcount: A:0.52, C:0.48, G:0.00, T:0.00
Consensus pattern (32 bp):
ACAAACCAACCAAAACACAACCCACAAACCCA
Done.