Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Scaffold103
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 2633873
ACGTcount: A:0.35, C:0.15, G:0.15, T:0.35
Warning! 16636 characters in sequence are not A, C, G, or T
File 9 of 21
Found at i:903582 original size:31 final size:31
Alignment explanation
Indices: 903547--903606 Score: 86
Period size: 31 Copynumber: 1.9 Consensus size: 31
903537 TATTAATATT
*
903547 TATTTAATATAAT-TAATATAAAATATTTATG
1 TATTTAATAAAATATAATAT-AAATATTTATG
903578 TATTTAATAAAATCATAATATAAATATTT
1 TATTTAATAAAAT-ATAATATAAATATTT
903607 TTTATTATTT
Statistics
Matches: 26, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
31 12 0.46
32 8 0.31
33 6 0.23
ACGTcount: A:0.50, C:0.02, G:0.02, T:0.47
Consensus pattern (31 bp):
TATTTAATAAAATATAATATAAATATTTATG
Found at i:904080 original size:30 final size:30
Alignment explanation
Indices: 904044--904100 Score: 105
Period size: 30 Copynumber: 1.9 Consensus size: 30
904034 TGTGTTAAAG
904044 ATTTATTTAGGTATAAATTAAAAATTATGC
1 ATTTATTTAGGTATAAATTAAAAATTATGC
*
904074 ATTTATTTAGGTATAAATTAAATATTA
1 ATTTATTTAGGTATAAATTAAAAATTA
904101 AAAATTTAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
30 26 1.00
ACGTcount: A:0.44, C:0.02, G:0.09, T:0.46
Consensus pattern (30 bp):
ATTTATTTAGGTATAAATTAAAAATTATGC
Found at i:904108 original size:30 final size:30
Alignment explanation
Indices: 904038--904108 Score: 97
Period size: 30 Copynumber: 2.4 Consensus size: 30
904028 TTAACTTGTG
*
904038 TTAAAGATTTATTTAGGTATAAATTAAAAA
1 TTAAAAATTTATTTAGGTATAAATTAAAAA
*** *
904068 TTATGCATTTATTTAGGTATAAATTAAATA
1 TTAAAAATTTATTTAGGTATAAATTAAAAA
904098 TTAAAAATTTA
1 TTAAAAATTTA
904109 ACTTATGTTA
Statistics
Matches: 34, Mismatches: 7, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
30 34 1.00
ACGTcount: A:0.46, C:0.01, G:0.08, T:0.44
Consensus pattern (30 bp):
TTAAAAATTTATTTAGGTATAAATTAAAAA
Found at i:904539 original size:22 final size:22
Alignment explanation
Indices: 904494--904544 Score: 57
Period size: 22 Copynumber: 2.3 Consensus size: 22
904484 AATATGCTTA
*
904494 AAAAATATTACAACTTCAATAT
1 AAAAATATTACAACTTCAAAAT
* * *
904516 AAAAATATTACTATTTTAAAAT
1 AAAAATATTACAACTTCAAAAT
*
904538 AATAATA
1 AAAAATA
904545 ATAATAATAA
Statistics
Matches: 24, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
22 24 1.00
ACGTcount: A:0.57, C:0.08, G:0.00, T:0.35
Consensus pattern (22 bp):
AAAAATATTACAACTTCAAAAT
Found at i:904612 original size:29 final size:32
Alignment explanation
Indices: 904549--904612 Score: 80
Period size: 32 Copynumber: 2.1 Consensus size: 32
904539 ATAATAATAA
* * *
904549 TAATAATAATTATTATTATTATTTTGATTTCT
1 TAATAATAAATACTATTATTATTTTAATTTCT
904581 TAATAATAAATACTATTA-T-TTTTAATTT-T
1 TAATAATAAATACTATTATTATTTTAATTTCT
904610 TAA
1 TAA
904613 ATTTTAATAG
Statistics
Matches: 29, Mismatches: 3, Indels: 3
0.83 0.09 0.09
Matches are distributed among these distances:
29 4 0.14
30 8 0.28
31 1 0.03
32 16 0.55
ACGTcount: A:0.39, C:0.03, G:0.02, T:0.56
Consensus pattern (32 bp):
TAATAATAAATACTATTATTATTTTAATTTCT
Found at i:906313 original size:3 final size:3
Alignment explanation
Indices: 906305--906367 Score: 126
Period size: 3 Copynumber: 21.0 Consensus size: 3
906295 AACTAGATCC
906305 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
906353 ATA ATA ATA ATA ATA
1 ATA ATA ATA ATA ATA
906368 TCAACAACAA
Statistics
Matches: 60, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 60 1.00
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (3 bp):
ATA
Found at i:906428 original size:19 final size:18
Alignment explanation
Indices: 906404--906464 Score: 50
Period size: 19 Copynumber: 3.2 Consensus size: 18
906394 TTTTAGAGTA
906404 AAATTTATTAGTGATTTAT
1 AAATTTATTA-TGATTTAT
* * *
906423 AAATTTTTTATTTATGTTTT
1 AAATTTATTA-TGAT-TTAT
*
906443 AATTTTATTCATGATTTAT
1 AAATTTATT-ATGATTTAT
906462 AAA
1 AAA
906465 AGTTATATTG
Statistics
Matches: 31, Mismatches: 9, Indels: 4
0.70 0.20 0.09
Matches are distributed among these distances:
19 17 0.55
20 13 0.42
21 1 0.03
ACGTcount: A:0.34, C:0.02, G:0.07, T:0.57
Consensus pattern (18 bp):
AAATTTATTATGATTTAT
Found at i:906903 original size:16 final size:16
Alignment explanation
Indices: 906877--906914 Score: 58
Period size: 16 Copynumber: 2.2 Consensus size: 16
906867 AATTATATAA
906877 TTTTAAGAAAATAATATT
1 TTTTAA-AAAA-AATATT
906895 TTTTAAAAAAAATATT
1 TTTTAAAAAAAATATT
906911 TTTT
1 TTTT
906915 TGAAAGATTA
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
16 10 0.50
17 4 0.20
18 6 0.30
ACGTcount: A:0.47, C:0.00, G:0.03, T:0.50
Consensus pattern (16 bp):
TTTTAAAAAAAATATT
Found at i:907695 original size:16 final size:17
Alignment explanation
Indices: 907658--907708 Score: 54
Period size: 16 Copynumber: 3.1 Consensus size: 17
907648 AAAATCAATC
907658 AATTTAAATCTGAAAAT
1 AATTTAAATCTGAAAAT
*
907675 GATTTAAA-CTCG-AAAT
1 AATTTAAATCT-GAAAAT
*
907691 AATTTAAATAT-AAAAT
1 AATTTAAATCTGAAAAT
907707 AA
1 AA
907709 CTCAAATTTA
Statistics
Matches: 28, Mismatches: 3, Indels: 7
0.74 0.08 0.18
Matches are distributed among these distances:
16 19 0.68
17 9 0.32
ACGTcount: A:0.55, C:0.06, G:0.06, T:0.33
Consensus pattern (17 bp):
AATTTAAATCTGAAAAT
Found at i:907854 original size:15 final size:16
Alignment explanation
Indices: 907808--907854 Score: 62
Period size: 15 Copynumber: 3.0 Consensus size: 16
907798 AAACTTTAAA
907808 TTAAAATAATCTAAAAT
1 TTAAAATAAT-TAAAAT
*
907825 TT-AAATAATTTAAAT
1 TTAAAATAATTAAAAT
907840 TTAAAAT-ATTAAAAT
1 TTAAAATAATTAAAAT
907855 AATTAAATTA
Statistics
Matches: 27, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
15 14 0.52
16 11 0.41
17 2 0.07
ACGTcount: A:0.57, C:0.02, G:0.00, T:0.40
Consensus pattern (16 bp):
TTAAAATAATTAAAAT
Found at i:907860 original size:23 final size:22
Alignment explanation
Indices: 907819--907863 Score: 65
Period size: 23 Copynumber: 2.0 Consensus size: 22
907809 TAAAATAATC
907819 TAAAATTTAAATAATTTAAATT
1 TAAAATTTAAATAATTTAAATT
907841 TAAAATATTAAAATAA-TTAAATT
1 TAAAAT-TT-AAATAATTTAAATT
907864 AAATTAATTT
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
22 6 0.29
23 9 0.43
24 6 0.29
ACGTcount: A:0.58, C:0.00, G:0.00, T:0.42
Consensus pattern (22 bp):
TAAAATTTAAATAATTTAAATT
Found at i:907862 original size:16 final size:15
Alignment explanation
Indices: 907805--907854 Score: 57
Period size: 16 Copynumber: 3.3 Consensus size: 15
907795 AAAAAACTTT
907805 AAATTAAAATAATCTA
1 AAATTAAAATAAT-TA
*
907821 AAATTTAAATAATTTA
1 AAATTAAAATAA-TTA
*
907837 AATTTAAAAT-ATTA
1 AAATTAAAATAATTA
907851 AAAT
1 AAAT
907855 AATTAAATTA
Statistics
Matches: 29, Mismatches: 4, Indels: 4
0.78 0.11 0.11
Matches are distributed among these distances:
14 6 0.21
15 1 0.03
16 21 0.72
17 1 0.03
ACGTcount: A:0.60, C:0.02, G:0.00, T:0.38
Consensus pattern (15 bp):
AAATTAAAATAATTA
Found at i:907862 original size:32 final size:32
Alignment explanation
Indices: 907793--907854 Score: 85
Period size: 32 Copynumber: 2.0 Consensus size: 32
907783 CTTAAATGAC
*
907793 TTAAAAAACTTTAAA-TTAAAATAATCTAAAAT
1 TTAAATAA-TTTAAATTTAAAATAATCTAAAAT
907825 TTAAATAATTTAAATTTAAAAT-AT-TAAAAT
1 TTAAATAATTTAAATTTAAAATAATCTAAAAT
907855 AATTAAATTA
Statistics
Matches: 28, Mismatches: 1, Indels: 4
0.85 0.03 0.12
Matches are distributed among these distances:
30 6 0.21
31 8 0.29
32 14 0.50
ACGTcount: A:0.58, C:0.03, G:0.00, T:0.39
Consensus pattern (32 bp):
TTAAATAATTTAAATTTAAAATAATCTAAAAT
Found at i:907873 original size:32 final size:31
Alignment explanation
Indices: 907803--907875 Score: 78
Period size: 32 Copynumber: 2.3 Consensus size: 31
907793 TTAAAAAACT
* *
907803 TTAAATTAAAATAATCTAAAATTTAAATAAT
1 TTAATTTAAAATAATCTAAAATTTAAATAAA
907834 TTAAATTTAAAAT-AT-TAAAATAATTAAATTAAA
1 TT-AATTTAAAATAATCTAAAAT--TTAAA-TAAA
907867 TTAATTTAA
1 TTAATTTAA
907876 TTTAAAAGAT
Statistics
Matches: 36, Mismatches: 2, Indels: 7
0.80 0.04 0.16
Matches are distributed among these distances:
30 6 0.17
31 4 0.11
32 21 0.58
33 5 0.14
ACGTcount: A:0.58, C:0.01, G:0.00, T:0.41
Consensus pattern (31 bp):
TTAATTTAAAATAATCTAAAATTTAAATAAA
Found at i:908268 original size:10 final size:11
Alignment explanation
Indices: 908253--908322 Score: 58
Period size: 10 Copynumber: 6.4 Consensus size: 11
908243 TATTAAACTT
908253 TTTAATTAT-A
1 TTTAATTATAA
908263 TTTAA-TATAA
1 TTTAATTATAA
908273 TTTAATT-TAAA
1 TTTAATTAT-AA
* *
908284 TTTAAATAAAAAA
1 TTT-AAT-TATAA
908297 TTTAAATTATAA
1 TTT-AATTATAA
908309 TTTAATT-TAA
1 TTTAATTATAA
908319 TTTA
1 TTTA
908323 TAGATATTTT
Statistics
Matches: 50, Mismatches: 4, Indels: 12
0.76 0.06 0.18
Matches are distributed among these distances:
9 3 0.06
10 19 0.38
11 10 0.20
12 9 0.18
13 9 0.18
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (11 bp):
TTTAATTATAA
Found at i:908571 original size:2 final size:2
Alignment explanation
Indices: 908564--908592 Score: 58
Period size: 2 Copynumber: 14.5 Consensus size: 2
908554 TTAATCCATG
908564 TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
908593 GCATTAGTGA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:909001 original size:32 final size:33
Alignment explanation
Indices: 908943--909006 Score: 85
Period size: 32 Copynumber: 2.0 Consensus size: 33
908933 TCATATTTAA
* * * *
908943 AATATTTTATATTTATTTTAATTTTAATATATT
1 AATAATTTATATTTATCTAAATTTTAAAATATT
908976 AATAATTTATA-TTATCTAAATTTTAAAATAT
1 AATAATTTATATTTATCTAAATTTTAAAATAT
909007 ATATTTATAA
Statistics
Matches: 27, Mismatches: 4, Indels: 1
0.84 0.12 0.03
Matches are distributed among these distances:
32 17 0.63
33 10 0.37
ACGTcount: A:0.42, C:0.02, G:0.00, T:0.56
Consensus pattern (33 bp):
AATAATTTATATTTATCTAAATTTTAAAATATT
Found at i:914921 original size:2 final size:2
Alignment explanation
Indices: 914914--914943 Score: 60
Period size: 2 Copynumber: 15.0 Consensus size: 2
914904 TGTTGAAATA
914914 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
914944 CCTTTTACAA
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 28 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:915298 original size:2 final size:2
Alignment explanation
Indices: 915291--915319 Score: 58
Period size: 2 Copynumber: 14.5 Consensus size: 2
915281 GCTATCGAGT
915291 TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
915320 TGCTTGCCTT
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:915983 original size:17 final size:18
Alignment explanation
Indices: 915956--916001 Score: 60
Period size: 19 Copynumber: 2.6 Consensus size: 18
915946 GAGTTTTACA
915956 AAATT-TATATTT-TAAT
1 AAATTATATATTTGTAAT
*
915972 AAATTATATATTTGTATT
1 AAATTATATATTTGTAAT
915990 ATAATTATATAT
1 A-AATTATATAT
916002 AATTATTTTA
Statistics
Matches: 26, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
16 5 0.19
17 7 0.27
18 4 0.15
19 10 0.38
ACGTcount: A:0.43, C:0.00, G:0.02, T:0.54
Consensus pattern (18 bp):
AAATTATATATTTGTAAT
Found at i:916046 original size:39 final size:42
Alignment explanation
Indices: 915963--916071 Score: 100
Period size: 39 Copynumber: 2.6 Consensus size: 42
915953 ACAAAATTTA
* * * *
915963 TATTTTAATAAATTATATATTTGTATTATAATTATATATAAT
1 TATTTTAATAAATTATATATTTATATCATAATTAAAAATAAT
916005 TATTTT-A-AAATT-TATATTTATATCATATATTAAAAAT-AT
1 TATTTTAATAAATTATATATTTATATCATA-ATTAAAAATAAT
* * *
916044 TATATATAATATATTCATATAATTATAT
1 TAT-TTTAATAAATT-ATATATTTATAT
916072 TTAAAATTAT
Statistics
Matches: 54, Mismatches: 7, Indels: 10
0.76 0.10 0.14
Matches are distributed among these distances:
39 18 0.33
40 14 0.26
41 2 0.04
42 10 0.19
44 10 0.19
ACGTcount: A:0.45, C:0.02, G:0.01, T:0.52
Consensus pattern (42 bp):
TATTTTAATAAATTATATATTTATATCATAATTAAAAATAAT
Found at i:916072 original size:28 final size:26
Alignment explanation
Indices: 915987--916072 Score: 74
Period size: 23 Copynumber: 3.3 Consensus size: 26
915977 ATATATTTGT
*
915987 ATTATAATTATATATAAT-TATTTTAAA
1 ATTAT-ATTATATATAATATATTAT-AA
*
916014 ATTTATATT-TATATCATATATTA-AA
1 A-TTATATTATATATAATATATTATAA
916039 A--ATATTATATATAATATATTCATATA
1 ATTATATTATATATAATATATT-ATA-A
916065 ATTATATT
1 ATTATATT
916073 TAAAATTATT
Statistics
Matches: 48, Mismatches: 3, Indels: 15
0.73 0.05 0.23
Matches are distributed among these distances:
22 5 0.10
23 12 0.25
24 1 0.02
25 4 0.08
26 9 0.19
27 8 0.17
28 9 0.19
ACGTcount: A:0.47, C:0.02, G:0.00, T:0.51
Consensus pattern (26 bp):
ATTATATTATATATAATATATTATAA
Found at i:916494 original size:2 final size:2
Alignment explanation
Indices: 916489--916517 Score: 58
Period size: 2 Copynumber: 14.5 Consensus size: 2
916479 ATACATGGTG
916489 AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
916518 ACCATATTTT
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:917308 original size:15 final size:16
Alignment explanation
Indices: 917288--917322 Score: 54
Period size: 15 Copynumber: 2.2 Consensus size: 16
917278 ATTATGTCTG
*
917288 ATTTTGGGTTCGA-TC
1 ATTTTGAGTTCGAGTC
917303 ATTTTGAGTTCGAGTC
1 ATTTTGAGTTCGAGTC
917319 ATTT
1 ATTT
917323 CAAATTTAAA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
15 12 0.67
16 6 0.33
ACGTcount: A:0.17, C:0.11, G:0.23, T:0.49
Consensus pattern (16 bp):
ATTTTGAGTTCGAGTC
Found at i:918023 original size:17 final size:18
Alignment explanation
Indices: 918003--918038 Score: 56
Period size: 18 Copynumber: 2.1 Consensus size: 18
917993 TTTTCTTACT
*
918003 CAAAATT-TTTTTAATTA
1 CAAAATTATCTTTAATTA
918020 CAAAATTATCTTTAATTA
1 CAAAATTATCTTTAATTA
918038 C
1 C
918039 TATTAAATTA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
17 7 0.41
18 10 0.59
ACGTcount: A:0.42, C:0.11, G:0.00, T:0.47
Consensus pattern (18 bp):
CAAAATTATCTTTAATTA
Found at i:918083 original size:16 final size:16
Alignment explanation
Indices: 918040--918074 Score: 54
Period size: 16 Copynumber: 2.2 Consensus size: 16
918030 TTTAATTACT
918040 ATTAAATTAA-ATTATA
1 ATTAAA-TAATATTATA
918056 ATTAAATAATATTATA
1 ATTAAATAATATTATA
918072 ATT
1 ATT
918075 TAGATATATA
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
15 3 0.17
16 15 0.83
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (16 bp):
ATTAAATAATATTATA
Found at i:919646 original size:19 final size:18
Alignment explanation
Indices: 919592--919646 Score: 56
Period size: 19 Copynumber: 2.9 Consensus size: 18
919582 CGTATCATAT
* *
919592 ATTATTTTAATTATTTTA
1 ATTATATTAATTATTATA
* *
919610 TTTATATTATATTTTTATA
1 ATTATATTA-ATTATTATA
919629 ATTATATCTAATTATTAT
1 ATTATAT-TAATTATTAT
919647 CAAGTTTATT
Statistics
Matches: 29, Mismatches: 6, Indels: 3
0.76 0.16 0.08
Matches are distributed among these distances:
18 7 0.24
19 20 0.69
20 2 0.07
ACGTcount: A:0.35, C:0.02, G:0.00, T:0.64
Consensus pattern (18 bp):
ATTATATTAATTATTATA
Found at i:920568 original size:14 final size:15
Alignment explanation
Indices: 920539--920578 Score: 55
Period size: 14 Copynumber: 2.7 Consensus size: 15
920529 TTTAAAAAGT
*
920539 TTTTAAAATATTATA
1 TTTTAATATATTATA
920554 TTTTAATAT-TTATA
1 TTTTAATATATTATA
*
920568 TTTAAATATAT
1 TTTTAATATAT
920579 ATCGAATTAT
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
14 13 0.59
15 9 0.41
ACGTcount: A:0.42, C:0.00, G:0.00, T:0.57
Consensus pattern (15 bp):
TTTTAATATATTATA
Found at i:922164 original size:17 final size:18
Alignment explanation
Indices: 922144--922193 Score: 50
Period size: 17 Copynumber: 2.9 Consensus size: 18
922134 TTATTTTAAT
*
922144 TTTAAAAATT-ATTTATA
1 TTTAAAAATTAATATATA
* *
922161 TTT-ATATTTAATATATA
1 TTTAAAAATTAATATATA
*
922178 TTTAAAAATAAATATA
1 TTTAAAAATTAATATA
922194 AAATATAATC
Statistics
Matches: 25, Mismatches: 6, Indels: 3
0.74 0.18 0.09
Matches are distributed among these distances:
16 4 0.16
17 12 0.48
18 9 0.36
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (18 bp):
TTTAAAAATTAATATATA
Found at i:922246 original size:17 final size:17
Alignment explanation
Indices: 922225--922261 Score: 51
Period size: 17 Copynumber: 2.3 Consensus size: 17
922215 AAAAGAACTT
922225 AATATA-ATT-ATATTA
1 AATATATATTCATATTA
*
922240 AATATATATTCATATTT
1 AATATATATTCATATTA
922257 AATAT
1 AATAT
922262 TTTTTTAATA
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
15 6 0.32
16 3 0.16
17 10 0.53
ACGTcount: A:0.49, C:0.03, G:0.00, T:0.49
Consensus pattern (17 bp):
AATATATATTCATATTA
Found at i:922303 original size:2 final size:2
Alignment explanation
Indices: 922285--922346 Score: 106
Period size: 2 Copynumber: 31.0 Consensus size: 2
922275 TTATTCTTCA
* *
922285 AT AT AT AG AT AT TT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
922327 AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT
922347 TTGGAGCTTC
Statistics
Matches: 56, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
2 56 1.00
ACGTcount: A:0.48, C:0.00, G:0.02, T:0.50
Consensus pattern (2 bp):
AT
Found at i:926520 original size:10 final size:10
Alignment explanation
Indices: 926491--926536 Score: 56
Period size: 10 Copynumber: 4.5 Consensus size: 10
926481 TTGTATATAA
*
926491 ATAAAATATC
1 ATAAAATATT
926501 ATAAAATATT
1 ATAAAATATT
*
926511 ATAAACTATTT
1 ATAAAATA-TT
*
926522 AAAAAATATT
1 ATAAAATATT
926532 ATAAA
1 ATAAA
926537 TTATATAATT
Statistics
Matches: 30, Mismatches: 5, Indels: 2
0.81 0.14 0.05
Matches are distributed among these distances:
10 22 0.73
11 8 0.27
ACGTcount: A:0.61, C:0.04, G:0.00, T:0.35
Consensus pattern (10 bp):
ATAAAATATT
Found at i:927132 original size:18 final size:18
Alignment explanation
Indices: 927109--927161 Score: 56
Period size: 18 Copynumber: 2.9 Consensus size: 18
927099 AATTTAATAA
927109 TAATATTTATATTATTTT
1 TAATATTTATATTATTTT
*
927127 TAATA-TTATAATTATATT
1 TAATATTTAT-ATTATTTT
*
927145 TAAAATATTATA-TATTT
1 TAATAT-TTATATTATTT
927162 ATATAAATTT
Statistics
Matches: 29, Mismatches: 3, Indels: 6
0.76 0.08 0.16
Matches are distributed among these distances:
17 4 0.14
18 20 0.69
19 1 0.03
20 4 0.14
ACGTcount: A:0.42, C:0.00, G:0.00, T:0.58
Consensus pattern (18 bp):
TAATATTTATATTATTTT
Found at i:927168 original size:20 final size:20
Alignment explanation
Indices: 927128--927168 Score: 57
Period size: 20 Copynumber: 2.0 Consensus size: 20
927118 TATTATTTTT
*
927128 AATATTATAATTATATTTAA
1 AATATTATAATTATATATAA
927148 AATATTATATATT-TATATAA
1 AATATTATA-ATTATATATAA
927168 A
1 A
927169 TTTTGATATA
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
20 16 0.84
21 3 0.16
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (20 bp):
AATATTATAATTATATATAA
Found at i:927197 original size:20 final size:19
Alignment explanation
Indices: 927147--927197 Score: 57
Period size: 20 Copynumber: 2.6 Consensus size: 19
927137 ATTATATTTA
* *
927147 AAATATTATATATTTATAT
1 AAATTTTATATATTAATAT
927166 AAATTTTGATATATTAATAAT
1 AAATTTT-ATATATTAAT-AT
*
927187 TAATTTTATAT
1 AAATTTTATAT
927198 TTATTTTGAT
Statistics
Matches: 27, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
19 6 0.22
20 13 0.48
21 8 0.30
ACGTcount: A:0.45, C:0.00, G:0.02, T:0.53
Consensus pattern (19 bp):
AAATTTTATATATTAATAT
Found at i:927322 original size:29 final size:29
Alignment explanation
Indices: 927260--927322 Score: 74
Period size: 29 Copynumber: 2.2 Consensus size: 29
927250 ACTTAAGTTG
927260 TTTTTAAAATTAATTATCAAAATAATATT
1 TTTTTAAAATTAATTATCAAAATAATATT
* * * *
927289 ATTTTAAAA-TATATTATTAAAATATTTTT
1 TTTTTAAAATTA-ATTATCAAAATAATATT
927318 TTTTT
1 TTTTT
927323 CACGCTGATA
Statistics
Matches: 28, Mismatches: 5, Indels: 2
0.80 0.14 0.06
Matches are distributed among these distances:
28 2 0.07
29 26 0.93
ACGTcount: A:0.43, C:0.02, G:0.00, T:0.56
Consensus pattern (29 bp):
TTTTTAAAATTAATTATCAAAATAATATT
Found at i:927524 original size:29 final size:28
Alignment explanation
Indices: 927474--927541 Score: 84
Period size: 29 Copynumber: 2.4 Consensus size: 28
927464 AAAAATGACA
** *
927474 AAAATAATAATATTTTCGTAATATACTTT
1 AAAATAATAATATTTTAATAATA-AATTT
927503 AAAATAATAATATTTTAATAATAAATTT
1 AAAATAATAATATTTTAATAATAAATTT
*
927531 -AAATATTAATA
1 AAAATAATAATA
927542 GTAAAATAAT
Statistics
Matches: 35, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
27 10 0.29
28 4 0.11
29 21 0.60
ACGTcount: A:0.53, C:0.03, G:0.01, T:0.43
Consensus pattern (28 bp):
AAAATAATAATATTTTAATAATAAATTT
Found at i:927573 original size:8 final size:9
Alignment explanation
Indices: 927554--927610 Score: 62
Period size: 9 Copynumber: 6.2 Consensus size: 9
927544 AAAATAATTA
927554 ATATATTTT
1 ATATATTTT
927563 ATATATTTAT
1 ATATATTT-T
927573 ATTATATTTT
1 A-TATATTTT
*
927583 CTATATTTT
1 ATATATTTT
*
927592 A-ATTTTTT
1 ATATATTTT
*
927600 ATATATATT
1 ATATATTTT
927609 AT
1 AT
927611 TGAATCATGT
Statistics
Matches: 40, Mismatches: 5, Indels: 6
0.78 0.10 0.12
Matches are distributed among these distances:
8 7 0.17
9 23 0.57
10 3 0.08
11 7 0.17
ACGTcount: A:0.33, C:0.02, G:0.00, T:0.65
Consensus pattern (9 bp):
ATATATTTT
Found at i:928695 original size:31 final size:31
Alignment explanation
Indices: 928645--928704 Score: 77
Period size: 31 Copynumber: 1.9 Consensus size: 31
928635 CGGGATACTC
* *
928645 AAAAAATTATTTTATTATTTATTATATTATT
1 AAAAAAATATTTTATTATTTATTAAATTATT
*
928676 AAAAAAATATTTT-TATATTTTTTAAATTA
1 AAAAAAATATTTTAT-TATTTATTAAATTA
928705 AATTATTTTT
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
30 1 0.04
31 24 0.96
ACGTcount: A:0.45, C:0.00, G:0.00, T:0.55
Consensus pattern (31 bp):
AAAAAAATATTTTATTATTTATTAAATTATT
Found at i:928711 original size:25 final size:22
Alignment explanation
Indices: 928658--928715 Score: 62
Period size: 23 Copynumber: 2.5 Consensus size: 22
928648 AAATTATTTT
928658 ATTATTTATTATATTATTAAAAA
1 ATTATTT-TTATATTATTAAAAA
* *
928681 AATATTTTTATATTTTTTAAATTAA
1 ATTATTTTTATA-TTATTAAA--AA
928706 ATTATTTTTA
1 ATTATTTTTA
928716 ATACCAAATA
Statistics
Matches: 29, Mismatches: 3, Indels: 4
0.81 0.08 0.11
Matches are distributed among these distances:
22 5 0.17
23 13 0.45
25 11 0.38
ACGTcount: A:0.41, C:0.00, G:0.00, T:0.59
Consensus pattern (22 bp):
ATTATTTTTATATTATTAAAAA
Found at i:929353 original size:4 final size:4
Alignment explanation
Indices: 929344--929368 Score: 50
Period size: 4 Copynumber: 6.2 Consensus size: 4
929334 TTTTCACTGA
929344 TATT TATT TATT TATT TATT TATT T
1 TATT TATT TATT TATT TATT TATT T
929369 GCAATTGGTT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 21 1.00
ACGTcount: A:0.24, C:0.00, G:0.00, T:0.76
Consensus pattern (4 bp):
TATT
Found at i:929802 original size:20 final size:20
Alignment explanation
Indices: 929760--929802 Score: 59
Period size: 20 Copynumber: 2.1 Consensus size: 20
929750 AATTCATCAG
*
929760 AATTAACAGCATCAAAATTA
1 AATTAACAGCATCAAAATAA
* *
929780 AATTAACTGCATCAGAATAA
1 AATTAACAGCATCAAAATAA
929800 AAT
1 AAT
929803 GAGGAAGTTT
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.53, C:0.14, G:0.07, T:0.26
Consensus pattern (20 bp):
AATTAACAGCATCAAAATAA
Found at i:933056 original size:2 final size:2
Alignment explanation
Indices: 933049--933083 Score: 70
Period size: 2 Copynumber: 17.5 Consensus size: 2
933039 AAAAGAATGA
933049 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
933084 CTGCCTTTTT
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 33 1.00
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (2 bp):
AT
Found at i:933184 original size:12 final size:12
Alignment explanation
Indices: 933169--933205 Score: 56
Period size: 12 Copynumber: 3.1 Consensus size: 12
933159 TAATTATAAG
*
933169 AATAAATAATAT
1 AATAAAAAATAT
933181 AATAAAAAATAT
1 AATAAAAAATAT
*
933193 AATAAAAATTAT
1 AATAAAAAATAT
933205 A
1 A
933206 TATATATATA
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
12 23 1.00
ACGTcount: A:0.70, C:0.00, G:0.00, T:0.30
Consensus pattern (12 bp):
AATAAAAAATAT
Found at i:933207 original size:2 final size:2
Alignment explanation
Indices: 933202--933227 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
933192 TAATAAAAAT
933202 TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA
933228 AAGATTAAAA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:934175 original size:17 final size:18
Alignment explanation
Indices: 934153--934221 Score: 65
Period size: 17 Copynumber: 4.1 Consensus size: 18
934143 AAATGTTATA
*
934153 TATTTATA-TATATTAAT
1 TATTTATATTATATAAAT
934170 TATTTATATTATATAAAT
1 TATTTATATTATATAAAT
* * **
934188 T-TTAATA-TAT-TTACG
1 TATTTATATTATATAAAT
934203 TATTTATATTATATAAAT
1 TATTTATATTATATAAAT
934221 T
1 T
934222 TTAAAATTAT
Statistics
Matches: 39, Mismatches: 9, Indels: 7
0.71 0.16 0.13
Matches are distributed among these distances:
15 3 0.08
16 8 0.21
17 16 0.41
18 12 0.31
ACGTcount: A:0.41, C:0.01, G:0.01, T:0.57
Consensus pattern (18 bp):
TATTTATATTATATAAAT
Found at i:934224 original size:16 final size:16
Alignment explanation
Indices: 934172--934224 Score: 54
Period size: 16 Copynumber: 3.2 Consensus size: 16
934162 ATATTAATTA
934172 TTTATATTATATAAAT
1 TTTATATTATATAAAT
* **
934188 TTTA-ATATATTTACGT
1 TTTATAT-TATATAAAT
934204 ATTTATATTATATAAAT
1 -TTTATATTATATAAAT
934221 TTTA
1 TTTA
934225 AAATTATATT
Statistics
Matches: 28, Mismatches: 6, Indels: 6
0.70 0.15 0.15
Matches are distributed among these distances:
15 2 0.07
16 14 0.50
17 10 0.36
18 2 0.07
ACGTcount: A:0.40, C:0.02, G:0.02, T:0.57
Consensus pattern (16 bp):
TTTATATTATATAAAT
Found at i:934232 original size:17 final size:18
Alignment explanation
Indices: 934210--934243 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
934200 ACGTATTTAT
934210 ATTATA-TAAATTTTAAA
1 ATTATATTAAATTTTAAA
*
934227 ATTATATTATATTTTAA
1 ATTATATTAAATTTTAA
934244 TTTTTTATAT
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 6 0.40
18 9 0.60
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (18 bp):
ATTATATTAAATTTTAAA
Found at i:934240 original size:33 final size:33
Alignment explanation
Indices: 934160--934240 Score: 103
Period size: 33 Copynumber: 2.4 Consensus size: 33
934150 ATATATTTAT
* *
934160 ATATATTAATTATTTATATTATATAAATTTTAAT
1 ATATATT-ACTATTTATATTATATAAATTTTAAA
934194 ATAT-TTACGTATTTATATTATATAAATTTTAAA
1 ATATATTAC-TATTTATATTATATAAATTTTAAA
934227 ATTATATTA-TATTT
1 A-TATATTACTATTT
934241 TAATTTTTTA
Statistics
Matches: 42, Mismatches: 2, Indels: 7
0.82 0.04 0.14
Matches are distributed among these distances:
32 1 0.02
33 31 0.74
34 7 0.17
35 3 0.07
ACGTcount: A:0.42, C:0.01, G:0.01, T:0.56
Consensus pattern (33 bp):
ATATATTACTATTTATATTATATAAATTTTAAA
Found at i:934526 original size:19 final size:18
Alignment explanation
Indices: 934497--934541 Score: 56
Period size: 19 Copynumber: 2.4 Consensus size: 18
934487 AGAGTAAATC
*
934497 TATAAATTTATATA-TTT
1 TATATATTTATATACTTT
934514 GTATTATATTTATATACTTT
1 -TA-TATATTTATATACTTT
934534 TATATATT
1 TATATATT
934542 ATAATTATAT
Statistics
Matches: 24, Mismatches: 1, Indels: 4
0.83 0.03 0.14
Matches are distributed among these distances:
18 8 0.33
19 13 0.54
20 3 0.12
ACGTcount: A:0.36, C:0.02, G:0.02, T:0.60
Consensus pattern (18 bp):
TATATATTTATATACTTT
Found at i:934897 original size:6 final size:6
Alignment explanation
Indices: 934865--934910 Score: 60
Period size: 6 Copynumber: 7.7 Consensus size: 6
934855 TTTTAATAAT
934865 AATTTA AATCATTA AA-TTA AA-TTA AATTTA AATTTA AATTTA AATT
1 AATTTA AAT--TTA AATTTA AATTTA AATTTA AATTTA AATTTA AATT
934911 GAAAATTTGT
Statistics
Matches: 37, Mismatches: 0, Indels: 6
0.86 0.00 0.14
Matches are distributed among these distances:
5 10 0.27
6 22 0.59
8 5 0.14
ACGTcount: A:0.52, C:0.02, G:0.00, T:0.46
Consensus pattern (6 bp):
AATTTA
Found at i:934918 original size:13 final size:12
Alignment explanation
Indices: 934881--934918 Score: 51
Period size: 12 Copynumber: 3.2 Consensus size: 12
934871 AATCATTAAA
934881 TTAAATT-AAAT
1 TTAAATTAAAAT
*
934892 TTAAATTTAAAT
1 TTAAATTAAAAT
934904 TTAAATTGAAAAT
1 TTAAATT-AAAAT
934917 TT
1 TT
934919 GTTTTGTCAT
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
11 7 0.29
12 11 0.46
13 6 0.25
ACGTcount: A:0.50, C:0.00, G:0.03, T:0.47
Consensus pattern (12 bp):
TTAAATTAAAAT
Found at i:935581 original size:16 final size:17
Alignment explanation
Indices: 935550--935583 Score: 52
Period size: 17 Copynumber: 2.1 Consensus size: 17
935540 TAAAATTTTA
935550 ATTTTAATTTATAAAAT
1 ATTTTAATTTATAAAAT
*
935567 ATTTTATTTTA-AAAAT
1 ATTTTAATTTATAAAAT
935583 A
1 A
935584 AATTTATAAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
16 6 0.38
17 10 0.62
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (17 bp):
ATTTTAATTTATAAAAT
Found at i:936047 original size:17 final size:17
Alignment explanation
Indices: 936027--936076 Score: 55
Period size: 20 Copynumber: 2.8 Consensus size: 17
936017 TATACTTTTA
936027 TATTAATTTTATAATAT
1 TATTAATTTTATAATAT
*
936044 TATTATATTTATTAAAATAT
1 TATTA-A-TT-TTATAATAT
*
936064 TATTAAATTTATA
1 TATTAATTTTATA
936077 TTTACAATAA
Statistics
Matches: 27, Mismatches: 3, Indels: 6
0.75 0.08 0.17
Matches are distributed among these distances:
17 9 0.33
18 2 0.07
19 3 0.11
20 13 0.48
ACGTcount: A:0.44, C:0.00, G:0.00, T:0.56
Consensus pattern (17 bp):
TATTAATTTTATAATAT
Found at i:936334 original size:23 final size:24
Alignment explanation
Indices: 936301--936365 Score: 105
Period size: 23 Copynumber: 2.8 Consensus size: 24
936291 ATTAAAAGAA
936301 AACTATTTTAACTAAAATACGTAT
1 AACTATTTTAACTAAAATACGTAT
* *
936325 AATTA-TTTAACCAAAATACGTAT
1 AACTATTTTAACTAAAATACGTAT
936348 AACTATTTTAACTAAAAT
1 AACTATTTTAACTAAAAT
936366 TTTAATTATT
Statistics
Matches: 36, Mismatches: 4, Indels: 2
0.86 0.10 0.05
Matches are distributed among these distances:
23 21 0.58
24 15 0.42
ACGTcount: A:0.48, C:0.12, G:0.03, T:0.37
Consensus pattern (24 bp):
AACTATTTTAACTAAAATACGTAT
Found at i:936387 original size:23 final size:22
Alignment explanation
Indices: 936360--936405 Score: 58
Period size: 23 Copynumber: 2.0 Consensus size: 22
936350 CTATTTTAAC
*
936360 TAAAAT-TTTAATTATTTATATTT
1 TAAAATCTTAAATT-TTTA-ATTT
936383 TAAAATCTTAAATTTTTAATTT
1 TAAAATCTTAAATTTTTAATTT
936405 T
1 T
936406 TATAATTTAA
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
22 5 0.24
23 10 0.48
24 6 0.29
ACGTcount: A:0.39, C:0.02, G:0.00, T:0.59
Consensus pattern (22 bp):
TAAAATCTTAAATTTTTAATTT
Found at i:937317 original size:5 final size:5
Alignment explanation
Indices: 937282--937329 Score: 53
Period size: 5 Copynumber: 9.4 Consensus size: 5
937272 AATATCATAA
* *
937282 ATTAT TTTAT GATTAT AATTAT AAT-T ATTAT ATTAT ATTAT ATTAT AT
1 ATTAT ATTAT -ATTAT -ATTAT ATTAT ATTAT ATTAT ATTAT ATTAT AT
937330 AATAAGTCGG
Statistics
Matches: 36, Mismatches: 5, Indels: 4
0.80 0.11 0.09
Matches are distributed among these distances:
4 3 0.08
5 24 0.67
6 9 0.25
ACGTcount: A:0.40, C:0.00, G:0.02, T:0.58
Consensus pattern (5 bp):
ATTAT
Found at i:937514 original size:7 final size:7
Alignment explanation
Indices: 937504--937568 Score: 58
Period size: 7 Copynumber: 8.9 Consensus size: 7
937494 AATATTTAAT
937504 AATTTTA
1 AATTTTA
937511 AATTTTA
1 AATTTTA
937518 AATTTTA
1 AATTTTA
937525 ATATTTATA
1 A-ATTT-TA
* *
937534 ATTTTTT
1 AATTTTA
*
937541 TATATTTA
1 AAT-TTTA
*
937549 ATTTTTA
1 AATTTTA
*
937556 AATTATA
1 AATTTTA
937563 AATTTT
1 AATTTT
937569 TTTGATAAAA
Statistics
Matches: 45, Mismatches: 10, Indels: 6
0.74 0.16 0.10
Matches are distributed among these distances:
7 31 0.69
8 11 0.24
9 3 0.07
ACGTcount: A:0.38, C:0.00, G:0.00, T:0.62
Consensus pattern (7 bp):
AATTTTA
Found at i:937552 original size:30 final size:31
Alignment explanation
Indices: 937493--937571 Score: 78
Period size: 30 Copynumber: 2.6 Consensus size: 31
937483 TTTTAAAATA
**
937493 TAATATTTAATAA-TTTTAAATTTTAAA-TTT
1 TAATATTT-ATAATTTTTTTATTTTAAATTTT
937523 TAATATTTATAATTTTTTTATATTT-AATTTT
1 TAATATTTATAATTTTTTTAT-TTTAAATTTT
937554 TAA-A-TTATAAATTTTTTT
1 TAATATTTAT-AATTTTTTT
937572 GATAAAAATA
Statistics
Matches: 43, Mismatches: 2, Indels: 8
0.81 0.04 0.15
Matches are distributed among these distances:
29 8 0.19
30 26 0.60
31 9 0.21
ACGTcount: A:0.38, C:0.00, G:0.00, T:0.62
Consensus pattern (31 bp):
TAATATTTATAATTTTTTTATTTTAAATTTT
Found at i:937569 original size:15 final size:15
Alignment explanation
Indices: 937506--937569 Score: 53
Period size: 13 Copynumber: 4.3 Consensus size: 15
937496 TATTTAATAA
*
937506 TTTTAAATTTTAAA-
1 TTTTAAATTATAAAT
*
937520 TTTTAATATTTATAATTT
1 TTTTAA-A-TTATAA-AT
*
937538 TTTTATATT-T-AAT
1 TTTTAAATTATAAAT
937551 TTTTAAATTATAAAT
1 TTTTAAATTATAAAT
937566 TTTT
1 TTTT
937570 TTGATAAAAA
Statistics
Matches: 39, Mismatches: 5, Indels: 11
0.71 0.09 0.20
Matches are distributed among these distances:
13 9 0.23
14 8 0.21
15 9 0.23
16 7 0.18
17 1 0.03
18 5 0.13
ACGTcount: A:0.36, C:0.00, G:0.00, T:0.64
Consensus pattern (15 bp):
TTTTAAATTATAAAT
Found at i:940711 original size:15 final size:15
Alignment explanation
Indices: 940658--940717 Score: 54
Period size: 15 Copynumber: 4.1 Consensus size: 15
940648 GATGATGGAT
940658 AATTAT-TTTTTTAA
1 AATTATATTTTTTAA
*
940672 AA-AATA-TTTTTAA
1 AATTATATTTTTTAA
*
940685 TAATTATTTTTTTTAA
1 -AATTATATTTTTTAA
* *
940701 AATTGTATTTTTGAA
1 AATTATATTTTTTAA
940716 AA
1 AA
940718 GTATTAAAGA
Statistics
Matches: 36, Mismatches: 6, Indels: 7
0.73 0.12 0.14
Matches are distributed among these distances:
13 9 0.25
14 4 0.11
15 16 0.44
16 7 0.19
ACGTcount: A:0.40, C:0.00, G:0.03, T:0.57
Consensus pattern (15 bp):
AATTATATTTTTTAA
Found at i:941377 original size:12 final size:12
Alignment explanation
Indices: 941360--941386 Score: 54
Period size: 12 Copynumber: 2.2 Consensus size: 12
941350 AATATTTATC
941360 AAATATAAAAAT
1 AAATATAAAAAT
941372 AAATATAAAAAT
1 AAATATAAAAAT
941384 AAA
1 AAA
941387 AAATTCGAAT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 15 1.00
ACGTcount: A:0.78, C:0.00, G:0.00, T:0.22
Consensus pattern (12 bp):
AAATATAAAAAT
Found at i:942761 original size:36 final size:35
Alignment explanation
Indices: 942706--942796 Score: 92
Period size: 36 Copynumber: 2.5 Consensus size: 35
942696 AACTACGTAG
* **
942706 TATTTATTTCTAAAAATTTCACTACTCTTTATTTTT
1 TATTTCTTTCTAATTATTTCA-TACTCTTTATTTTT
* * *
942742 TCTTTCTTTCTAATTATTTCATATTTTTTATTTTT
1 TATTTCTTTCTAATTATTTCATACTCTTTATTTTT
* *
942777 TATTTTTTATTTAATTATTT
1 TATTTCTT-TCTAATTATTT
942797 ATTAGTTTCA
Statistics
Matches: 45, Mismatches: 9, Indels: 2
0.80 0.16 0.04
Matches are distributed among these distances:
35 18 0.40
36 27 0.60
ACGTcount: A:0.23, C:0.10, G:0.00, T:0.67
Consensus pattern (35 bp):
TATTTCTTTCTAATTATTTCATACTCTTTATTTTT
Found at i:942772 original size:14 final size:14
Alignment explanation
Indices: 942755--942788 Score: 50
Period size: 14 Copynumber: 2.4 Consensus size: 14
942745 TTCTTTCTAA
942755 TTATTTCATATTTT
1 TTATTTCATATTTT
**
942769 TTATTTTTTATTTT
1 TTATTTCATATTTT
942783 TTATTT
1 TTATTT
942789 AATTATTTAT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
14 18 1.00
ACGTcount: A:0.18, C:0.03, G:0.00, T:0.79
Consensus pattern (14 bp):
TTATTTCATATTTT
Found at i:942782 original size:6 final size:7
Alignment explanation
Indices: 942763--942788 Score: 52
Period size: 7 Copynumber: 3.7 Consensus size: 7
942753 AATTATTTCA
942763 TATTTTT
1 TATTTTT
942770 TATTTTT
1 TATTTTT
942777 TATTTTT
1 TATTTTT
942784 TATTT
1 TATTT
942789 AATTATTTAT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 19 1.00
ACGTcount: A:0.15, C:0.00, G:0.00, T:0.85
Consensus pattern (7 bp):
TATTTTT
Found at i:943029 original size:2 final size:2
Alignment explanation
Indices: 943022--943092 Score: 142
Period size: 2 Copynumber: 35.5 Consensus size: 2
943012 TAATTAGATC
943022 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
943064 TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
943093 GAATTCTTGT
Statistics
Matches: 69, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 69 1.00
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (2 bp):
TA
Found at i:950248 original size:16 final size:16
Alignment explanation
Indices: 950195--950276 Score: 55
Period size: 16 Copynumber: 4.9 Consensus size: 16
950185 ATTATATTAT
950195 TTTAATTTAAATTAAATAA
1 TTTAATTT--ATTAAA-AA
*
950214 TATT-ATTTATTAAATA
1 T-TTAATTTATTAAAAA
950230 TTTGAATTT-TTAAAAA
1 TTT-AATTTATTAAAAA
*
950246 TTTAAATTTAATAAATAA
1 TTT-AATTTATTAAA-AA
950264 -TTAATTT-TTAAAA
1 TTTAATTTATTAAAA
950277 TTAATGTTCG
Statistics
Matches: 53, Mismatches: 5, Indels: 15
0.73 0.07 0.21
Matches are distributed among these distances:
14 1 0.02
15 6 0.11
16 21 0.40
17 16 0.30
18 2 0.04
19 5 0.09
20 2 0.04
ACGTcount: A:0.49, C:0.00, G:0.01, T:0.50
Consensus pattern (16 bp):
TTTAATTTATTAAAAA
Found at i:950393 original size:47 final size:49
Alignment explanation
Indices: 950329--950431 Score: 131
Period size: 47 Copynumber: 2.1 Consensus size: 49
950319 TAAATAATTG
* * *
950329 AATAATAATTTACATATTCAAA-TTTA-TTACTCAAAAAA-ATAAATTTA
1 AATAATAATCTAAATATTCAAACTTTATTTA-TAAAAAAATATAAATTTA
*
950376 AATAATAATCTAAATATTTAAACTTTTATTTATAAAAAAATATAAATTTA
1 AATAATAATCTAAATATTCAAAC-TTTATTTATAAAAAAATATAAATTTA
950426 AATAAT
1 AATAAT
950432 TAATATATGA
Statistics
Matches: 48, Mismatches: 4, Indels: 5
0.84 0.07 0.09
Matches are distributed among these distances:
47 19 0.40
49 11 0.23
50 18 0.38
ACGTcount: A:0.54, C:0.06, G:0.00, T:0.40
Consensus pattern (49 bp):
AATAATAATCTAAATATTCAAACTTTATTTATAAAAAAATATAAATTTA
Found at i:950496 original size:15 final size:15
Alignment explanation
Indices: 950476--950509 Score: 52
Period size: 15 Copynumber: 2.3 Consensus size: 15
950466 AATAATTACT
950476 ATAATAT-TATAATTA
1 ATAATATCTA-AATTA
950491 ATAATATCTAAATTA
1 ATAATATCTAAATTA
950506 ATAA
1 ATAA
950510 AAAAACGAAT
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
15 16 0.89
16 2 0.11
ACGTcount: A:0.56, C:0.03, G:0.00, T:0.41
Consensus pattern (15 bp):
ATAATATCTAAATTA
Found at i:951253 original size:25 final size:21
Alignment explanation
Indices: 951224--951268 Score: 54
Period size: 25 Copynumber: 2.0 Consensus size: 21
951214 TTTTATAAAA
951224 AATTTAGATTAAATTATTATTTAAT
1 AATTTA-A-TAAA-TATT-TTTAAT
951249 AATTTAATAAATATTTTTAA
1 AATTTAATAAATATTTTTAA
951269 AAAAATTTAT
Statistics
Matches: 20, Mismatches: 0, Indels: 4
0.83 0.00 0.17
Matches are distributed among these distances:
21 5 0.25
22 4 0.20
23 4 0.20
24 1 0.05
25 6 0.30
ACGTcount: A:0.47, C:0.00, G:0.02, T:0.51
Consensus pattern (21 bp):
AATTTAATAAATATTTTTAAT
Found at i:951714 original size:13 final size:13
Alignment explanation
Indices: 951696--951761 Score: 51
Period size: 14 Copynumber: 4.6 Consensus size: 13
951686 TTAAAAAAAT
951696 TTTAAATTTTTTA
1 TTTAAATTTTTTA
951709 TTTAAATTTATTTTTTA
1 TTT-AA---ATTTTTTA
*
951726 TTTAAATTAATTTA
1 TTTAAATT-TTTTA
* *
951740 TTTATATTTATTA
1 TTTAAATTTTTTA
951753 TTTATAATT
1 TTTA-AATT
951762 AATAATTAAT
Statistics
Matches: 42, Mismatches: 5, Indels: 11
0.72 0.09 0.19
Matches are distributed among these distances:
13 13 0.31
14 16 0.38
16 2 0.05
17 11 0.26
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (13 bp):
TTTAAATTTTTTA
Found at i:951723 original size:17 final size:17
Alignment explanation
Indices: 951700--951744 Score: 72
Period size: 17 Copynumber: 2.6 Consensus size: 17
951690 AAAAATTTTA
951700 AATTTTTTATTTAAATT
1 AATTTTTTATTTAAATT
*
951717 TATTTTTTATTTAAATT
1 AATTTTTTATTTAAATT
951734 AATTTATTTAT
1 AATTT-TTTAT
951745 ATTTATTATT
Statistics
Matches: 25, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
17 20 0.80
18 5 0.20
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (17 bp):
AATTTTTTATTTAAATT
Found at i:951741 original size:14 final size:14
Alignment explanation
Indices: 951722--951764 Score: 52
Period size: 14 Copynumber: 3.1 Consensus size: 14
951712 AAATTTATTT
951722 TTTATTTAAATTAA
1 TTTATTTAAATTAA
* *
951736 TTTATTTATATTTA
1 TTTATTTAAATTAA
951750 -TTATTTATAATTAA
1 TTTATTTA-AATTAA
951764 T
1 T
951765 AATTAATAAA
Statistics
Matches: 23, Mismatches: 4, Indels: 3
0.77 0.13 0.10
Matches are distributed among these distances:
13 7 0.30
14 16 0.70
ACGTcount: A:0.37, C:0.00, G:0.00, T:0.63
Consensus pattern (14 bp):
TTTATTTAAATTAA
Found at i:951743 original size:31 final size:30
Alignment explanation
Indices: 951696--951757 Score: 88
Period size: 31 Copynumber: 2.0 Consensus size: 30
951686 TTAAAAAAAT
* *
951696 TTTAAATTTTTTATTTAAATTTATTTTTTA
1 TTTAAATTATTTATTTAAATTTATTATTTA
*
951726 TTTAAATTAATTTATTTATATTTATTATTTA
1 TTTAAATT-ATTTATTTAAATTTATTATTTA
951757 T
1 T
951758 AATTAATAAT
Statistics
Matches: 28, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
30 8 0.29
31 20 0.71
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (30 bp):
TTTAAATTATTTATTTAAATTTATTATTTA
Found at i:951755 original size:17 final size:16
Alignment explanation
Indices: 951705--951757 Score: 56
Period size: 17 Copynumber: 3.3 Consensus size: 16
951695 TTTTAAATTT
*
951705 TTTATTTAAATTTATTT
1 TTTATTT-AATTTATTA
*
951722 TTTATTTAAATTA--A
1 TTTATTTAATTTATTA
951736 TTTATTTATATTTATTA
1 TTTATTTA-ATTTATTA
951753 TTTAT
1 TTTAT
951758 AATTAATAAT
Statistics
Matches: 30, Mismatches: 3, Indels: 6
0.77 0.08 0.15
Matches are distributed among these distances:
14 8 0.27
15 4 0.13
16 5 0.17
17 13 0.43
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (16 bp):
TTTATTTAATTTATTA
Found at i:951856 original size:29 final size:28
Alignment explanation
Indices: 951753--951862 Score: 73
Period size: 29 Copynumber: 3.9 Consensus size: 28
951743 ATATTTATTA
* *
951753 TTTATAATTAATAATTAATAAAAATTAAAA
1 TTTATAATTAATAATTAAT-AAAATT-TAT
* * * ** *
951783 TTTAT-TTTTAT-TTTAATACTATATAT
1 TTTATAATTAATAATTAATAAAATTTAT
951809 TTTATAATTAATAATTAATAAAATTTAT
1 TTTATAATTAATAATTAATAAAATTTAT
* *
951837 TTTAATTATTAA-ATATTAATTAAATT
1 TTT-ATAATTAATA-ATTAATAAAATT
951863 AATCGATTTA
Statistics
Matches: 60, Mismatches: 16, Indels: 9
0.71 0.19 0.11
Matches are distributed among these distances:
26 6 0.10
27 7 0.12
28 20 0.33
29 22 0.37
30 5 0.08
ACGTcount: A:0.47, C:0.01, G:0.00, T:0.52
Consensus pattern (28 bp):
TTTATAATTAATAATTAATAAAATTTAT
Found at i:951953 original size:17 final size:18
Alignment explanation
Indices: 951892--951956 Score: 73
Period size: 17 Copynumber: 3.6 Consensus size: 18
951882 AAAATTTATT
951892 TAAATTATAATTTAAATAAA
1 TAAATT-TAA-TTAAATAAA
951912 TTAAATTT-ATTAAATAAA
1 -TAAATTTAATTAAATAAA
*
951930 T-AATTTAATT-CATAAA
1 TAAATTTAATTAAATAAA
951946 TAAATTTAATT
1 TAAATTTAATT
951957 TAAAATTTTT
Statistics
Matches: 41, Mismatches: 1, Indels: 8
0.82 0.02 0.16
Matches are distributed among these distances:
16 11 0.27
17 13 0.32
18 9 0.22
19 1 0.02
20 1 0.02
21 6 0.15
ACGTcount: A:0.54, C:0.02, G:0.00, T:0.45
Consensus pattern (18 bp):
TAAATTTAATTAAATAAA
Found at i:951962 original size:16 final size:16
Alignment explanation
Indices: 951868--951962 Score: 54
Period size: 16 Copynumber: 5.9 Consensus size: 16
951858 AAATTAATCG
* *
951868 ATTTAAATTAATAAAAA
1 ATTTAATTTAA-AATAA
*
951885 ATTT-ATTTAAATTATA
1 ATTTAATTTAAAATA-A
* *
951901 ATTTAA-ATAAATTAA
1 ATTTAATTTAAAATAA
*
951916 ATTT-A-TTAAATAAATA
1 ATTTAATTTAAA-ATA-A
*
951932 ATTTAATTCATAAATAA
1 ATTTAATTTA-AAATAA
951949 ATTTAATTTAAAAT
1 ATTTAATTTAAAAT
951963 TTTTTGATAT
Statistics
Matches: 61, Mismatches: 10, Indels: 15
0.71 0.12 0.17
Matches are distributed among these distances:
14 5 0.08
15 8 0.13
16 26 0.43
17 16 0.26
18 4 0.07
19 2 0.03
ACGTcount: A:0.55, C:0.01, G:0.00, T:0.44
Consensus pattern (16 bp):
ATTTAATTTAAAATAA
Found at i:952320 original size:16 final size:16
Alignment explanation
Indices: 952299--952334 Score: 56
Period size: 16 Copynumber: 2.2 Consensus size: 16
952289 ATATCACATA
952299 TAAATATA-AAAATTAT
1 TAAATATATAAAATT-T
952315 TAAATATATAAAATTT
1 TAAATATATAAAATTT
952331 TAAA
1 TAAA
952335 AAAATTAAAT
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
16 13 0.68
17 6 0.32
ACGTcount: A:0.61, C:0.00, G:0.00, T:0.39
Consensus pattern (16 bp):
TAAATATATAAAATTT
Found at i:952328 original size:25 final size:24
Alignment explanation
Indices: 952296--952348 Score: 63
Period size: 25 Copynumber: 2.2 Consensus size: 24
952286 TATATATCAC
*
952296 ATATAAA-TATAAAAATTATTAAAT
1 ATATAAATTATAAAAA-AATTAAAT
*
952320 ATATAAAATTTTAAAAAAATTAAAT
1 ATAT-AAATTATAAAAAAATTAAAT
952345 ATAT
1 ATAT
952349 TATATCATAC
Statistics
Matches: 25, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
24 4 0.16
25 14 0.56
26 7 0.28
ACGTcount: A:0.62, C:0.00, G:0.00, T:0.38
Consensus pattern (24 bp):
ATATAAATTATAAAAAAATTAAAT
Found at i:952377 original size:13 final size:14
Alignment explanation
Indices: 952342--952382 Score: 57
Period size: 13 Copynumber: 2.9 Consensus size: 14
952332 AAAAAAATTA
952342 AATATATTATATCAT
1 AATAT-TTATATCAT
952357 ACATATTTATAT-AT
1 A-ATATTTATATCAT
952371 AATATTTATATC
1 AATATTTATATC
952383 TATATTCATG
Statistics
Matches: 24, Mismatches: 0, Indels: 5
0.83 0.00 0.17
Matches are distributed among these distances:
13 10 0.42
14 3 0.12
15 7 0.29
16 4 0.17
ACGTcount: A:0.44, C:0.07, G:0.00, T:0.49
Consensus pattern (14 bp):
AATATTTATATCAT
Found at i:955618 original size:22 final size:22
Alignment explanation
Indices: 955593--955645 Score: 63
Period size: 22 Copynumber: 2.4 Consensus size: 22
955583 TAAATATTTT
* *
955593 TATTATATAA-AAATATATATAA
1 TATTATAAAATAAATAT-TAAAA
955615 TATTATAAAATAAATATTAAAA
1 TATTATAAAATAAATATTAAAA
*
955637 TATAATAAA
1 TATTATAAA
955646 TTATTTAAAT
Statistics
Matches: 27, Mismatches: 3, Indels: 2
0.84 0.09 0.06
Matches are distributed among these distances:
22 21 0.78
23 6 0.22
ACGTcount: A:0.62, C:0.00, G:0.00, T:0.38
Consensus pattern (22 bp):
TATTATAAAATAAATATTAAAA
Found at i:955670 original size:29 final size:28
Alignment explanation
Indices: 955625--955696 Score: 80
Period size: 26 Copynumber: 2.7 Consensus size: 28
955615 TATTATAAAA
**
955625 TAAA-TATT-AAAATATAATAAATTA-TT
1 TAAATTATTAAAAAT-TAATAAAAAATTT
*
955651 TAAATT-TTAAAATTTAATAAAAAATTT
1 TAAATTATTAAAAATTAATAAAAAATTT
955678 TAAATTATTAAAAATTAAT
1 TAAATTATTAAAAATTAAT
955697 TTTTTAAAAA
Statistics
Matches: 38, Mismatches: 4, Indels: 6
0.79 0.08 0.12
Matches are distributed among these distances:
26 14 0.37
27 13 0.34
28 11 0.29
ACGTcount: A:0.57, C:0.00, G:0.00, T:0.43
Consensus pattern (28 bp):
TAAATTATTAAAAATTAATAAAAAATTT
Found at i:955716 original size:16 final size:16
Alignment explanation
Indices: 955685--955728 Score: 58
Period size: 16 Copynumber: 2.9 Consensus size: 16
955675 TTTTAAATTA
955685 TTAAAAAT-TAATTTT
1 TTAAAAATATAATTTT
955700 TTAAAAATAT-ATATTT
1 TTAAAAATATAAT-TTT
955716 TTAAAAATA-AATT
1 TTAAAAATATAATT
955729 AAAAATATAA
Statistics
Matches: 26, Mismatches: 0, Indels: 6
0.81 0.00 0.19
Matches are distributed among these distances:
15 11 0.42
16 15 0.58
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (16 bp):
TTAAAAATATAATTTT
Found at i:961306 original size:20 final size:20
Alignment explanation
Indices: 961278--961315 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
961268 AAAAAAATTA
961278 TTAAAATTAAT-TAAAATAT
1 TTAAAATTAATATAAAATAT
961297 TTAAATATTAATATAAAAT
1 TTAAA-ATTAATATAAAAT
961316 TAATATTTTT
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
19 5 0.29
20 6 0.35
21 6 0.35
ACGTcount: A:0.58, C:0.00, G:0.00, T:0.42
Consensus pattern (20 bp):
TTAAAATTAATATAAAATAT
Found at i:961799 original size:23 final size:24
Alignment explanation
Indices: 961770--961823 Score: 65
Period size: 25 Copynumber: 2.2 Consensus size: 24
961760 AATTTTTATG
*
961770 AAATATATATT-TTATAGATATAC
1 AAATATATATTATTATAAATATAC
* *
961793 AAATATATTTTCATTATAAATATAT
1 AAATATATATT-ATTATAAATATAC
961818 AAATAT
1 AAATAT
961824 GTAATATTCA
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
23 10 0.38
25 16 0.62
ACGTcount: A:0.50, C:0.04, G:0.02, T:0.44
Consensus pattern (24 bp):
AAATATATATTATTATAAATATAC
Found at i:964957 original size:2 final size:2
Alignment explanation
Indices: 964950--964977 Score: 56
Period size: 2 Copynumber: 14.0 Consensus size: 2
964940 AATATCTGTT
964950 TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA
964978 AGTTTTTTAA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:965631 original size:2 final size:2
Alignment explanation
Indices: 965618--965661 Score: 70
Period size: 2 Copynumber: 22.0 Consensus size: 2
965608 AAGGAGGGAA
* *
965618 AG AG AG AC AG AG AG AG AG AA AG AG AG AG AG AG AG AG AG AG AG
1 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG
965660 AG
1 AG
965662 TTAAAAGGAG
Statistics
Matches: 38, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
2 38 1.00
ACGTcount: A:0.52, C:0.02, G:0.45, T:0.00
Consensus pattern (2 bp):
AG
Found at i:968688 original size:2 final size:2
Alignment explanation
Indices: 968683--968737 Score: 110
Period size: 2 Copynumber: 27.5 Consensus size: 2
968673 CTCCCTCTTT
968683 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
968725 TA TA TA TA TA TA T
1 TA TA TA TA TA TA T
968738 GTATTTGAGA
Statistics
Matches: 53, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 53 1.00
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (2 bp):
TA
Found at i:969803 original size:34 final size:33
Alignment explanation
Indices: 969755--969975 Score: 257
Period size: 34 Copynumber: 6.5 Consensus size: 33
969745 TGGTAAAAAC
*
969755 CACCATTTAATCAACAATGGCAACCTACCAAAT
1 CACCATTTAATCAACAATGGTAACCTACCAAAT
*
969788 CTACCATTTAGTCAACAATGGTAAGCC-ACCAAAT
1 C-ACCATTTAATCAACAATGGTAA-CCTACCAAAT
* *
969822 CACCCATTTAATCAATAATGGTAAGCTACCAAAT
1 CA-CCATTTAATCAACAATGGTAACCTACCAAAT
** *
969856 TTCTCATTTAATCAACAATGGTAAGCTACCAAAT
1 CAC-CATTTAATCAACAATGGTAACCTACCAAAT
* * **
969890 CTCCCATTTAGTCAACAATGACAAACC-ACCAAAT
1 C-ACCATTTAATCAACAATG-GTAACCTACCAAAT
*
969924 CACCCATTTAATCAACAATGGTAAACTACCAAAT
1 CA-CCATTTAATCAACAATGGTAACCTACCAAAT
969958 CACCATTTAATCAACAAT
1 CACCATTTAATCAACAAT
969976 TCTCCCACTT
Statistics
Matches: 160, Mismatches: 19, Indels: 18
0.81 0.10 0.09
Matches are distributed among these distances:
33 23 0.14
34 131 0.82
35 6 0.04
ACGTcount: A:0.41, C:0.27, G:0.07, T:0.25
Consensus pattern (33 bp):
CACCATTTAATCAACAATGGTAACCTACCAAAT
Found at i:969871 original size:68 final size:67
Alignment explanation
Indices: 969757--969975 Score: 287
Period size: 68 Copynumber: 3.2 Consensus size: 67
969747 GTAAAAACCA
* * *
969757 CCATTTAATCAACAATGGCAACCTACCAAATCTACCATTTAGTCAACAATGGTAAGCCACCAAAT
1 CCATTTAATCAACAATGGCAAACTACCAAAT-TACCATTTAATCAACAATGGTAAGCTACCAAAT
969822 CAC
65 CAC
* * * *
969825 CCATTTAATCAATAATGGTAAGCTACCAAATTTCTCATTTAATCAACAATGGTAAGCTACCAAAT
1 CCATTTAATCAACAATGGCAAACTACCAAATTAC-CATTTAATCAACAATGGTAAGCTACCAAAT
*
969890 CTC
65 CAC
* * * * *
969893 CCATTTAGTCAACAATGACAAACCACCAAATCACCCATTTAATCAACAATGGTAAACTACCAAAT
1 CCATTTAATCAACAATGGCAAACTACCAAATTA-CCATTTAATCAACAATGGTAAGCTACCAAAT
969958 CA-
65 CAC
969960 CCATTTAATCAACAAT
1 CCATTTAATCAACAAT
969976 TCTCCCACTT
Statistics
Matches: 131, Mismatches: 18, Indels: 5
0.85 0.12 0.03
Matches are distributed among these distances:
67 17 0.13
68 113 0.86
69 1 0.01
ACGTcount: A:0.41, C:0.26, G:0.07, T:0.25
Consensus pattern (67 bp):
CCATTTAATCAACAATGGCAAACTACCAAATTACCATTTAATCAACAATGGTAAGCTACCAAATC
AC
Found at i:969899 original size:102 final size:101
Alignment explanation
Indices: 969755--969975 Score: 343
Period size: 102 Copynumber: 2.2 Consensus size: 101
969745 TGGTAAAAAC
** *
969755 CACCATTTAATCAACAATGGCAACCTACCAAATCTACCATTTAGTCAACAATGGTAAGCCACCAA
1 CACCATTTAATCAACAATGGCAACCTACCAAATCTACCATTTAGTCAACAATGACAAACCACCAA
* *
969820 ATCACCCATTTAATCAATAATGGTAAGCTACCAAAT
66 ATCACCCATTTAATCAACAATGGTAAACTACCAAAT
** * * *
969856 TTCTCATTTAATCAACAATGGTAAGCTACCAAATCTCCCATTTAGTCAACAATGACAAACCACCA
1 CAC-CATTTAATCAACAATGGCAACCTACCAAATCTACCATTTAGTCAACAATGACAAACCACCA
969921 AATCACCCATTTAATCAACAATGGTAAACTACCAAAT
65 AATCACCCATTTAATCAACAATGGTAAACTACCAAAT
969958 CACCATTTAATCAACAAT
1 CACCATTTAATCAACAAT
969976 TCTCCCACTT
Statistics
Matches: 107, Mismatches: 12, Indels: 2
0.88 0.10 0.02
Matches are distributed among these distances:
101 16 0.15
102 91 0.85
ACGTcount: A:0.41, C:0.27, G:0.07, T:0.25
Consensus pattern (101 bp):
CACCATTTAATCAACAATGGCAACCTACCAAATCTACCATTTAGTCAACAATGACAAACCACCAA
ATCACCCATTTAATCAACAATGGTAAACTACCAAAT
Found at i:974499 original size:68 final size:68
Alignment explanation
Indices: 974386--974552 Score: 185
Period size: 68 Copynumber: 2.5 Consensus size: 68
974376 TAAAAACCAT
* * *
974386 CATTTAATCAACAATGGCAACCTATCAAATCTACCATTTAGTCAACAATGGTAAGTCACCAAATC
1 CATTTAATCAACAATGGCAACCTACCAAATCTACCATTTAATCAACAATGATAAGTCACCAAATC
974451 ACC
66 ACC
* * * * *
974454 CATTTAATCAATAATGGTAAGCTACCAAAT-TTCTCATTTAATCAACAATGATAAGTTACCAAAT
1 CATTTAATCAACAATGGCAACCTACCAAATCTAC-CATTTAATCAACAATGATAAGTCACCAAAT
** *
974518 TTCT
65 CACC
* *
974522 CATTTAGTCAACAATGACAAACC-ACCAAATC
1 CATTTAATCAACAATGGC-AACCTACCAAATC
974553 ACTCATCAGA
Statistics
Matches: 80, Mismatches: 16, Indels: 5
0.79 0.16 0.05
Matches are distributed among these distances:
67 2 0.03
68 75 0.94
69 3 0.04
ACGTcount: A:0.41, C:0.23, G:0.08, T:0.28
Consensus pattern (68 bp):
CATTTAATCAACAATGGCAACCTACCAAATCTACCATTTAATCAACAATGATAAGTCACCAAATC
ACC
Found at i:974558 original size:34 final size:34
Alignment explanation
Indices: 974385--974558 Score: 154
Period size: 34 Copynumber: 5.1 Consensus size: 34
974375 GTAAAAACCA
* *
974385 TCATTTAATCAACAATGGCAA-CCTATCAAATCTAC
1 TCATTTAATCAACAATGGTAAGCC-ACCAAATC-AC
* *
974420 -CATTTAGTCAACAATGGTAAGTCACCAAATCAC
1 TCATTTAATCAACAATGGTAAGCCACCAAATCAC
* * * **
974453 CCATTTAATCAATAATGGTAAGCTACCAAATTTC
1 TCATTTAATCAACAATGGTAAGCCACCAAATCAC
* ** **
974487 TCATTTAATCAACAATGATAAGTTACCAAATTTC
1 TCATTTAATCAACAATGGTAAGCCACCAAATCAC
* ** *
974521 TCATTTAGTCAACAATGACAAACCACCAAATCAC
1 TCATTTAATCAACAATGGTAAGCCACCAAATCAC
974555 TCAT
1 TCAT
974559 CAGAGTATTC
Statistics
Matches: 116, Mismatches: 21, Indels: 5
0.82 0.15 0.04
Matches are distributed among these distances:
33 2 0.02
34 113 0.97
35 1 0.01
ACGTcount: A:0.40, C:0.24, G:0.07, T:0.29
Consensus pattern (34 bp):
TCATTTAATCAACAATGGTAAGCCACCAAATCAC
Found at i:975326 original size:4 final size:4
Alignment explanation
Indices: 975317--975345 Score: 51
Period size: 4 Copynumber: 7.5 Consensus size: 4
975307 TCTACCCCCA
975317 TCCT TCCT TCCT TCCT TCCT T-CT TCCT TC
1 TCCT TCCT TCCT TCCT TCCT TCCT TCCT TC
975346 TTCACTTGCC
Statistics
Matches: 24, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
3 3 0.12
4 21 0.88
ACGTcount: A:0.00, C:0.48, G:0.00, T:0.52
Consensus pattern (4 bp):
TCCT
Found at i:976423 original size:2 final size:2
Alignment explanation
Indices: 976416--976446 Score: 55
Period size: 2 Copynumber: 16.0 Consensus size: 2
976406 TTTAGTAATG
976416 AT AT AT AT AT AT AT AT AT AT AT AT AT A- AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
976447 TTAAATTTCT
Statistics
Matches: 28, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
1 1 0.04
2 27 0.96
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:976988 original size:129 final size:129
Alignment explanation
Indices: 976835--977070 Score: 357
Period size: 129 Copynumber: 1.8 Consensus size: 129
976825 TAAATTTAGT
* *
976835 ATAATATGTAATTTAAAAAGAAAAAAATGTAAAATGAAAATTACATAATTTT-TTATCTCCTATT
1 ATAATATGTAATTCAAAAAG-AAAAAATGTAAAATGAAAATTACATAATTTTCTTATCACCTATT
* *
976899 CAAAATGTAAATGGAATTACAAGATATATTATCAAAATATTTATAAACTTTAATAATTTAAAAGA
65 CAAAACGTAAATGAAATTACAAGATATATTATCAAAATATTTATAAACTTTAATAATTTAAAAGA
* * *
976964 ATAATGTGTAATTCATAAATAAAAAATGTAAAATGAAAATTACATAATTTTCTTATCACCTATTC
1 ATAATATGTAATTCAAAAAGAAAAAATGTAAAATGAAAATTACATAATTTTCTTATCACCTATTC
* * * *
977029 GAAACGTAAATTAAATTACAAGATATATTATTAAATTATTTA
66 AAAACGTAAATGAAATTACAAGATATATTATCAAAATATTTA
977071 AAAAATTACT
Statistics
Matches: 95, Mismatches: 11, Indels: 2
0.88 0.10 0.02
Matches are distributed among these distances:
128 31 0.33
129 64 0.67
ACGTcount: A:0.50, C:0.07, G:0.07, T:0.36
Consensus pattern (129 bp):
ATAATATGTAATTCAAAAAGAAAAAATGTAAAATGAAAATTACATAATTTTCTTATCACCTATTC
AAAACGTAAATGAAATTACAAGATATATTATCAAAATATTTATAAACTTTAATAATTTAAAAGA
Found at i:978046 original size:76 final size:75
Alignment explanation
Indices: 977917--978177 Score: 258
Period size: 76 Copynumber: 3.4 Consensus size: 75
977907 TGAGTAATTC
* * * *
977917 AATAAAATGCAATAATATTACTTTTTATTAGAATATGTAAGGAATTAAGTAATTTGATAACTAAT
1 AATAAAATGCAGTAATATTACTTTTTATTAAAAAATG-AA-AAATTAAGTAATTTGATAACTAAT
*
977982 AGATGTAAATAT
64 AGATGTAAAAAT
* * *
977994 AATAAAATGCAGTAATATTA-TTTTTATTACAAAGAGTGAAAAATTAAATAATTTGATAACTCAT
1 AATAAAATGCAGTAATATTACTTTTTATTA-AAA-AATGAAAAATTAAGTAATTTGATAACTAAT
** *
978058 AGACATAAAGAT
64 AGATGTAAAAAT
* *
978070 AATACAATTGCAGCAATATTACTTTTTATTAAAAAA--AATGAAATTAAGTAATTTGATAACTAA
1 AATA-AAATGCAGTAATATTACTTTTTATTAAAAAATGAA--AAATTAAGTAATTTGATAACTAA
*
978133 TATATGTAAAAAT
63 TAGATGTAAAAAT
* * * * * *
978146 AACATAATACAATAATATCACTTTTAATTAAA
1 AATAAAATGCAGTAATATTACTTTTTATTAAA
978178 GTAAGAAAAA
Statistics
Matches: 151, Mismatches: 27, Indels: 14
0.79 0.14 0.07
Matches are distributed among these distances:
74 2 0.01
75 21 0.14
76 77 0.51
77 40 0.26
78 11 0.07
ACGTcount: A:0.49, C:0.07, G:0.09, T:0.35
Consensus pattern (75 bp):
AATAAAATGCAGTAATATTACTTTTTATTAAAAAATGAAAAATTAAGTAATTTGATAACTAATAG
ATGTAAAAAT
Found at i:979096 original size:20 final size:21
Alignment explanation
Indices: 979071--979112 Score: 59
Period size: 21 Copynumber: 2.0 Consensus size: 21
979061 AATTAAAAAC
* *
979071 ATATAC-AATTTAATAATTTT
1 ATATACGAAATTAAAAATTTT
979091 ATATACGAAATTAAAAATTTT
1 ATATACGAAATTAAAAATTTT
979112 A
1 A
979113 CGTCAATATA
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
20 6 0.32
21 13 0.68
ACGTcount: A:0.50, C:0.05, G:0.02, T:0.43
Consensus pattern (21 bp):
ATATACGAAATTAAAAATTTT
Found at i:981359 original size:4 final size:4
Alignment explanation
Indices: 981350--981391 Score: 75
Period size: 4 Copynumber: 10.2 Consensus size: 4
981340 CATTGTCTCG
981350 TAAA TAAA TAAA TAAA TAAA TAAA TAAA TAAA TAAA TCAAA T
1 TAAA TAAA TAAA TAAA TAAA TAAA TAAA TAAA TAAA T-AAA T
981392 TTCGGTGTTG
Statistics
Matches: 37, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
4 33 0.89
5 4 0.11
ACGTcount: A:0.71, C:0.02, G:0.00, T:0.26
Consensus pattern (4 bp):
TAAA
Found at i:981633 original size:22 final size:23
Alignment explanation
Indices: 981619--981660 Score: 61
Period size: 21 Copynumber: 1.9 Consensus size: 23
981609 ATTATTAAAG
*
981619 ATATTAAATTAAATTATATATAA
1 ATATAAAATTAAATTATATATAA
981642 ATATAAAATT--ATTATATAT
1 ATATAAAATTAAATTATATAT
981661 TTACATAAAT
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
21 9 0.50
23 9 0.50
ACGTcount: A:0.55, C:0.00, G:0.00, T:0.45
Consensus pattern (23 bp):
ATATAAAATTAAATTATATATAA
Found at i:981639 original size:17 final size:20
Alignment explanation
Indices: 981619--981658 Score: 52
Period size: 18 Copynumber: 2.2 Consensus size: 20
981609 ATTATTAAAG
981619 ATATTAAAT-T-AAATTA-T
1 ATATTAAATATAAAATTATT
981636 ATA-TAAATATAAAATTATT
1 ATATTAAATATAAAATTATT
981655 ATAT
1 ATAT
981659 ATTTACATAA
Statistics
Matches: 19, Mismatches: 0, Indels: 5
0.79 0.00 0.21
Matches are distributed among these distances:
16 5 0.26
17 4 0.21
18 6 0.32
19 4 0.21
ACGTcount: A:0.55, C:0.00, G:0.00, T:0.45
Consensus pattern (20 bp):
ATATTAAATATAAAATTATT
Found at i:982157 original size:22 final size:24
Alignment explanation
Indices: 982114--982165 Score: 72
Period size: 22 Copynumber: 2.2 Consensus size: 24
982104 TCAAATATAT
982114 TTTTAATTAATTAATATTTTATAAA
1 TTTTAATT-ATTAATATTTTATAAA
*
982139 TTTTAATT-TTAA-ATTTTATAAT
1 TTTTAATTATTAATATTTTATAAA
982161 TTTTA
1 TTTTA
982166 TAATTTTATT
Statistics
Matches: 26, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
22 14 0.54
23 4 0.15
25 8 0.31
ACGTcount: A:0.38, C:0.00, G:0.00, T:0.62
Consensus pattern (24 bp):
TTTTAATTATTAATATTTTATAAA
Found at i:982171 original size:30 final size:32
Alignment explanation
Indices: 982125--982183 Score: 95
Period size: 30 Copynumber: 1.9 Consensus size: 32
982115 TTTAATTAAT
982125 TAATATTTTATAAATTTTAATTTTAAATTTTA
1 TAATATTTTATAAATTTTAATTTTAAATTTTA
*
982157 TAAT-TTTTAT-AATTTTATTTTTAAATT
1 TAATATTTTATAAATTTTAATTTTAAATT
982184 AAAATTAAAA
Statistics
Matches: 26, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
30 16 0.62
31 6 0.23
32 4 0.15
ACGTcount: A:0.37, C:0.00, G:0.00, T:0.63
Consensus pattern (32 bp):
TAATATTTTATAAATTTTAATTTTAAATTTTA
Found at i:982176 original size:22 final size:20
Alignment explanation
Indices: 982128--982183 Score: 60
Period size: 22 Copynumber: 2.6 Consensus size: 20
982118 AATTAATTAA
982128 TATTTTATAAATTTTAATTT
1 TATTTTATAAATTTTAATTT
*
982148 TAAATTTTATAATTTTTATAATTT
1 T--ATTTTATAA-ATTT-TAATTT
982172 TATTTT-TAAATT
1 TATTTTATAAATT
982184 AAAATTAAAA
Statistics
Matches: 30, Mismatches: 2, Indels: 8
0.75 0.05 0.20
Matches are distributed among these distances:
20 3 0.10
21 3 0.10
22 14 0.47
23 3 0.10
24 7 0.23
ACGTcount: A:0.36, C:0.00, G:0.00, T:0.64
Consensus pattern (20 bp):
TATTTTATAAATTTTAATTT
Found at i:982197 original size:19 final size:18
Alignment explanation
Indices: 982175--982215 Score: 55
Period size: 19 Copynumber: 2.2 Consensus size: 18
982165 ATAATTTTAT
982175 TTTTAAATTAAAATTAAAA
1 TTTTAAATTAAAATT-AAA
* *
982194 TTTTTATTTAAAATTAAA
1 TTTTAAATTAAAATTAAA
982212 TTTT
1 TTTT
982216 TTCATCTGAA
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
18 7 0.35
19 13 0.65
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (18 bp):
TTTTAAATTAAAATTAAA
Found at i:982320 original size:11 final size:11
Alignment explanation
Indices: 982304--982335 Score: 55
Period size: 11 Copynumber: 2.9 Consensus size: 11
982294 AAAAATATTA
*
982304 AAATATTATAT
1 AAATATAATAT
982315 AAATATAATAT
1 AAATATAATAT
982326 AAATATAATA
1 AAATATAATA
982336 CAATGAAAAA
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
11 20 1.00
ACGTcount: A:0.62, C:0.00, G:0.00, T:0.38
Consensus pattern (11 bp):
AAATATAATAT
Found at i:982395 original size:19 final size:20
Alignment explanation
Indices: 982344--982396 Score: 58
Period size: 19 Copynumber: 2.8 Consensus size: 20
982334 TACAATGAAA
982344 AAATA-ATATAAATATGTTAT
1 AAATATATAT-AATATGTTAT
*
982364 AAATATATA-AATATTTTA-
1 AAATATATATAATATGTTAT
*
982382 AAATTTATATAATAT
1 AAATATATATAATAT
982397 AAATTATTAA
Statistics
Matches: 29, Mismatches: 2, Indels: 5
0.81 0.06 0.14
Matches are distributed among these distances:
18 8 0.28
19 13 0.45
20 5 0.17
21 3 0.10
ACGTcount: A:0.55, C:0.00, G:0.02, T:0.43
Consensus pattern (20 bp):
AAATATATATAATATGTTAT
Found at i:984545 original size:6 final size:6
Alignment explanation
Indices: 984534--984585 Score: 51
Period size: 6 Copynumber: 9.5 Consensus size: 6
984524 GATTTGAAAG
* *
984534 AAATTT AAATTT AAA-AT -AATTT -AATTT -AATTT AAAATT -AATTT
1 AAATTT AAATTT AAATTT AAATTT AAATTT AAATTT AAATTT AAATTT
984577 AAATTT AAA
1 AAATTT AAA
984586 ATGGTGAAGA
Statistics
Matches: 39, Mismatches: 4, Indels: 6
0.80 0.08 0.12
Matches are distributed among these distances:
4 2 0.05
5 16 0.41
6 21 0.54
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (6 bp):
AAATTT
Found at i:984556 original size:16 final size:16
Alignment explanation
Indices: 984535--984587 Score: 61
Period size: 17 Copynumber: 3.0 Consensus size: 16
984525 ATTTGAAAGA
984535 AATTTAAATTTAAAAT
1 AATTTAAATTTAAAAT
984551 AATTTAATTTAATTTAAAATT
1 AATTT-A---AATTTAAAA-T
984572 AATTTAAATTTAAAAT
1 AATTTAAATTTAAAAT
984588 GGTGAAGATT
Statistics
Matches: 32, Mismatches: 0, Indels: 10
0.76 0.00 0.24
Matches are distributed among these distances:
16 6 0.19
17 10 0.31
20 10 0.31
21 6 0.19
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (16 bp):
AATTTAAATTTAAAAT
Found at i:984561 original size:21 final size:23
Alignment explanation
Indices: 984534--984585 Score: 83
Period size: 21 Copynumber: 2.4 Consensus size: 23
984524 GATTTGAAAG
984534 AAATTTAAATTTAAAA-TAATTT
1 AAATTTAAATTTAAAATTAATTT
984556 -AATTT-AATTTAAAATTAATTT
1 AAATTTAAATTTAAAATTAATTT
984577 AAATTTAAA
1 AAATTTAAA
984586 ATGGTGAAGA
Statistics
Matches: 27, Mismatches: 0, Indels: 5
0.84 0.00 0.16
Matches are distributed among these distances:
20 9 0.33
21 11 0.41
22 5 0.19
23 2 0.07
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (23 bp):
AAATTTAAATTTAAAATTAATTT
Found at i:984575 original size:11 final size:11
Alignment explanation
Indices: 984541--984584 Score: 56
Period size: 11 Copynumber: 4.2 Consensus size: 11
984531 AAGAAATTTA
984541 AATTTAAAA-T
1 AATTTAAAATT
*
984551 AATTT-AATTT
1 AATTTAAAATT
984561 AATTTAAAATT
1 AATTTAAAATT
*
984572 AATTTAAATTT
1 AATTTAAAATT
984583 AA
1 AA
984585 AATGGTGAAG
Statistics
Matches: 29, Mismatches: 3, Indels: 3
0.83 0.09 0.09
Matches are distributed among these distances:
9 2 0.07
10 11 0.38
11 16 0.55
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (11 bp):
AATTTAAAATT
Found at i:984580 original size:10 final size:10
Alignment explanation
Indices: 984541--984581 Score: 55
Period size: 10 Copynumber: 4.0 Consensus size: 10
984531 AAGAAATTTA
*
984541 AATTTAAAAT
1 AATTTAAATT
*
984551 AATTTAATTT
1 AATTTAAATT
984561 AATTTAAAATT
1 AATTT-AAATT
984572 AATTTAAATT
1 AATTTAAATT
984582 TAAAATGGTG
Statistics
Matches: 27, Mismatches: 3, Indels: 2
0.84 0.09 0.06
Matches are distributed among these distances:
10 18 0.67
11 9 0.33
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (10 bp):
AATTTAAATT
Found at i:984689 original size:14 final size:13
Alignment explanation
Indices: 984648--984690 Score: 50
Period size: 14 Copynumber: 3.2 Consensus size: 13
984638 AAACGATTTA
*
984648 AATTTAAATTAAT
1 AATTTAATTTAAT
*
984661 AATTTGATTTAAAT
1 AATTTAATTT-AAT
984675 AATATTAATTTAAT
1 AAT-TTAATTTAAT
984689 AA
1 AA
984691 AATAAAAATA
Statistics
Matches: 25, Mismatches: 3, Indels: 3
0.81 0.10 0.10
Matches are distributed among these distances:
13 8 0.32
14 11 0.44
15 6 0.24
ACGTcount: A:0.51, C:0.00, G:0.02, T:0.47
Consensus pattern (13 bp):
AATTTAATTTAAT
Found at i:984728 original size:22 final size:21
Alignment explanation
Indices: 984703--984766 Score: 56
Period size: 22 Copynumber: 2.8 Consensus size: 21
984693 TAAAAATATA
984703 ATTTTAAATTATATTTTAAAGT
1 ATTTTAAATTATATTTTAAA-T
** *
984725 ATTTTATTTTATAATTTTATAT
1 ATTTTAAATTAT-ATTTTAAAT
984747 ATTTTTAAATATTATATTTT
1 A-TTTT-AA-ATTATATTTT
984767 TAATTAAGAT
Statistics
Matches: 33, Mismatches: 5, Indels: 6
0.75 0.11 0.14
Matches are distributed among these distances:
22 12 0.36
23 11 0.33
24 6 0.18
25 4 0.12
ACGTcount: A:0.36, C:0.00, G:0.02, T:0.62
Consensus pattern (21 bp):
ATTTTAAATTATATTTTAAAT
Found at i:984749 original size:17 final size:18
Alignment explanation
Indices: 984712--984768 Score: 54
Period size: 17 Copynumber: 3.5 Consensus size: 18
984702 AATTTTAAAT
*
984712 TATATTTTA-AAGTATT-
1 TATATTTTATAAATATTA
*
984728 T-TATTTTAT-AATTTTA
1 TATATTTTATAAATATTA
984744 TATATTTT-TAAATATTA
1 TATATTTTATAAATATTA
984761 TAT-TTTTA
1 TATATTTTA
984769 ATTAAGATTA
Statistics
Matches: 33, Mismatches: 3, Indels: 9
0.73 0.07 0.20
Matches are distributed among these distances:
15 11 0.33
16 7 0.21
17 15 0.45
ACGTcount: A:0.35, C:0.00, G:0.02, T:0.63
Consensus pattern (18 bp):
TATATTTTATAAATATTA
Found at i:984764 original size:15 final size:15
Alignment explanation
Indices: 984710--984769 Score: 59
Period size: 15 Copynumber: 3.9 Consensus size: 15
984700 ATAATTTTAA
984710 ATTATA-TTTTAAAGT
1 ATTATATTTTTAAA-T
* *
984725 ATTTTATTTTATAATT
1 ATTATATTTT-TAAAT
*
984741 TTATATATTTTTAAAT
1 AT-TATATTTTTAAAT
984757 ATTATATTTTTAA
1 ATTATATTTTTAA
984770 TTAAGATTAA
Statistics
Matches: 36, Mismatches: 6, Indels: 6
0.75 0.12 0.12
Matches are distributed among these distances:
15 16 0.44
16 10 0.28
17 10 0.28
ACGTcount: A:0.37, C:0.00, G:0.02, T:0.62
Consensus pattern (15 bp):
ATTATATTTTTAAAT
Found at i:985167 original size:22 final size:22
Alignment explanation
Indices: 985132--985174 Score: 61
Period size: 22 Copynumber: 2.0 Consensus size: 22
985122 AAATTTTATC
985132 TAAATTTAATTATAAAAATATA
1 TAAATTTAATTATAAAAATATA
*
985154 TAAATATTAA-TATAAATATAT
1 TAAAT-TTAATTATAAAAATAT
985175 TTTTATTTTT
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
22 15 0.79
23 4 0.21
ACGTcount: A:0.58, C:0.00, G:0.00, T:0.42
Consensus pattern (22 bp):
TAAATTTAATTATAAAAATATA
Found at i:985517 original size:19 final size:19
Alignment explanation
Indices: 985493--985534 Score: 59
Period size: 19 Copynumber: 2.2 Consensus size: 19
985483 AATATAAATA
985493 TATATCTAT-AATTATAGTC
1 TATATCTATCAATTATA-TC
*
985512 TATATCTATCATTTATATC
1 TATATCTATCAATTATATC
985531 TATA
1 TATA
985535 ACATAATATA
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
19 15 0.71
20 6 0.29
ACGTcount: A:0.36, C:0.12, G:0.02, T:0.50
Consensus pattern (19 bp):
TATATCTATCAATTATATC
Found at i:985715 original size:24 final size:22
Alignment explanation
Indices: 985688--985731 Score: 52
Period size: 22 Copynumber: 1.9 Consensus size: 22
985678 TAATATAAAA
985688 AGTAAATATATGAATATAAAAATG
1 AGTAAA-ATATGAA-ATAAAAATG
* *
985712 AGTATAATGTGAAATAAAAA
1 AGTAAAATATGAAATAAAAA
985732 AGAATTAACT
Statistics
Matches: 18, Mismatches: 2, Indels: 2
0.82 0.09 0.09
Matches are distributed among these distances:
22 7 0.39
23 6 0.33
24 5 0.28
ACGTcount: A:0.59, C:0.00, G:0.14, T:0.27
Consensus pattern (22 bp):
AGTAAAATATGAAATAAAAATG
Done.