Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Scaffold1030
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 40554
ACGTcount: A:0.33, C:0.15, G:0.17, T:0.35
Found at i:1244 original size:34 final size:31
Alignment explanation
Indices: 1162--1244 Score: 85
Period size: 36 Copynumber: 2.5 Consensus size: 31
1152 TTTTTTTAAA
*
1162 TTTAATATTTTAAGTATTATTAACATATATAAT
1 TTTAATATTTT--TTATTATTAACATATATAAT
*
1195 TTTAATATATATTTTATTATTTAACATAAATATGAT
1 TTTAATAT-T-TTTTATTA-TTAACAT--ATATAAT
1231 TTTAATATTTTTTA
1 TTTAATATTTTTTA
1245 ATAATTTATT
Statistics
Matches: 43, Mismatches: 2, Indels: 9
0.80 0.04 0.17
Matches are distributed among these distances:
33 13 0.30
34 13 0.30
35 3 0.07
36 14 0.33
ACGTcount: A:0.40, C:0.02, G:0.02, T:0.55
Consensus pattern (31 bp):
TTTAATATTTTTTATTATTAACATATATAAT
Found at i:5226 original size:21 final size:21
Alignment explanation
Indices: 5200--5252 Score: 70
Period size: 22 Copynumber: 2.5 Consensus size: 21
5190 GAGAGGCATC
*
5200 GATACTTTAATATAAGGTATT
1 GATACTTTAATATAAAGTATT
* *
5221 GATACTTTTTATGTAAAGTATT
1 GATAC-TTTAATATAAAGTATT
5243 GATACTTTAA
1 GATACTTTAA
5253 AGTGATGTAT
Statistics
Matches: 27, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
21 9 0.33
22 18 0.67
ACGTcount: A:0.36, C:0.06, G:0.13, T:0.45
Consensus pattern (21 bp):
GATACTTTAATATAAAGTATT
Found at i:12019 original size:24 final size:24
Alignment explanation
Indices: 11992--12041 Score: 100
Period size: 24 Copynumber: 2.1 Consensus size: 24
11982 TGTTATTGGA
11992 TTCTTTAATTTTGTTTTAGAGTTT
1 TTCTTTAATTTTGTTTTAGAGTTT
12016 TTCTTTAATTTTGTTTTAGAGTTT
1 TTCTTTAATTTTGTTTTAGAGTTT
12040 TT
1 TT
12042 TTGTTGGCTT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 26 1.00
ACGTcount: A:0.16, C:0.04, G:0.12, T:0.68
Consensus pattern (24 bp):
TTCTTTAATTTTGTTTTAGAGTTT
Found at i:14051 original size:12 final size:12
Alignment explanation
Indices: 14034--14058 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
14024 GAAAGATGAG
14034 AGTGAAAACAAA
1 AGTGAAAACAAA
14046 AGTGAAAACAAA
1 AGTGAAAACAAA
14058 A
1 A
14059 ATTAGTGTAA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.68, C:0.08, G:0.16, T:0.08
Consensus pattern (12 bp):
AGTGAAAACAAA
Found at i:15153 original size:13 final size:13
Alignment explanation
Indices: 15135--15159 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
15125 AGATTGCACA
15135 GTATCGATACATT
1 GTATCGATACATT
15148 GTATCGATACAT
1 GTATCGATACAT
15160 GACTAAATGT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.36
Consensus pattern (13 bp):
GTATCGATACATT
Found at i:15172 original size:20 final size:21
Alignment explanation
Indices: 15147--15199 Score: 72
Period size: 21 Copynumber: 2.6 Consensus size: 21
15137 ATCGATACAT
**
15147 TGTATCGATACATG-ACTAAA
1 TGTATCGATACATGAAAAAAA
*
15167 TGTATCGATACTTGAAAAAAA
1 TGTATCGATACATGAAAAAAA
15188 TGTATCGATACA
1 TGTATCGATACA
15200 GGTCATTGGC
Statistics
Matches: 28, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
20 13 0.46
21 15 0.54
ACGTcount: A:0.42, C:0.13, G:0.15, T:0.30
Consensus pattern (21 bp):
TGTATCGATACATGAAAAAAA
Found at i:15269 original size:13 final size:13
Alignment explanation
Indices: 15251--15276 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
15241 ACACACAGTA
15251 TGTATCGATACAT
1 TGTATCGATACAT
15264 TGTATCGATACAT
1 TGTATCGATACAT
15277 CCCAAAATGT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.15, G:0.15, T:0.38
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:15292 original size:33 final size:32
Alignment explanation
Indices: 15231--15298 Score: 100
Period size: 33 Copynumber: 2.1 Consensus size: 32
15221 GTAGCCAAAT
**
15231 TTGTATCGATACACACAGTATGTATCGATACA
1 TTGTATCGATACACACAAAATGTATCGATACA
*
15263 TTGTATCGATACATCCCAAAATGTATCGATACA
1 TTGTATCGATACA-CACAAAATGTATCGATACA
15296 TTG
1 TTG
15299 GCTTGTAACG
Statistics
Matches: 32, Mismatches: 3, Indels: 1
0.89 0.08 0.03
Matches are distributed among these distances:
32 13 0.41
33 19 0.59
ACGTcount: A:0.34, C:0.19, G:0.15, T:0.32
Consensus pattern (32 bp):
TTGTATCGATACACACAAAATGTATCGATACA
Found at i:19131 original size:80 final size:80
Alignment explanation
Indices: 18986--19211 Score: 240
Period size: 80 Copynumber: 2.8 Consensus size: 80
18976 TTGGCAATAA
** * * * * *
18986 CATGAAAGTGCTAACGCGACCTTAAAGATTTGGTTTTGGTGGGAAAAGTCTAAAAGGATCTTAAA
1 CATGAAAGTGCTAATACGACCTTAAAGGTTTGGTTTTGGTGGAAAAAGTCTAAAATGACCCTAAA
* *
19051 AAAGTTCAGTTTATG
66 AAAGTTCAATTTAGG
* * *
19066 CATGAAAGTGCTAATACGACCTTGAAGGTTTGGTTTTAGTGGAAAAAGTCTAAAATAACCCT-AA
1 CATGAAAGTGCTAATACGACCTTAAAGGTTTGGTTTTGGTGGAAAAAGTCTAAAATGACCCTAAA
*
19130 AAGGTTCAATTTAGG
66 AAAGTTCAATTTAGG
* * * * * * *
19145 CGT-AAAATCACTAATACAACCTTAAAAGTTTGATTTTGGTGGAAAAAAATCTAAAATGACCCTA
1 CATGAAAGT-GCTAATACGACCTTAAAGGTTTGGTTTTGGTGG-AAAAAGTCTAAAATGACCCTA
19209 AAA
64 AAA
19212 GGTCCGGTTT
Statistics
Matches: 120, Mismatches: 23, Indels: 5
0.81 0.16 0.03
Matches are distributed among these distances:
78 4 0.03
79 43 0.36
80 70 0.58
81 3 0.03
ACGTcount: A:0.39, C:0.13, G:0.19, T:0.29
Consensus pattern (80 bp):
CATGAAAGTGCTAATACGACCTTAAAGGTTTGGTTTTGGTGGAAAAAGTCTAAAATGACCCTAAA
AAAGTTCAATTTAGG
Found at i:19176 original size:79 final size:80
Alignment explanation
Indices: 19076--19264 Score: 238
Period size: 80 Copynumber: 2.4 Consensus size: 80
19066 CATGAAAGTG
* * * * *
19076 CTAATACGACCTTGAAGGTTTGGTTTTAGTGG-AAAAAGTCTAAAATAACCCTAAAAGGTTCAAT
1 CTAATACGACCTTAAAAGTTTGATTTTAGTGGAAAAAAATCTAAAATAACCCTAAAAGGTCCAAT
*
19140 TTAGGCGTAAAATCA
66 TTAGGCATAAAATCA
* * * **
19155 CTAATACAACCTTAAAAGTTTGATTTTGGTGGAAAAAAATCTAAAATGACCCTAAAAGGTCCGGT
1 CTAATACGACCTTAAAAGTTTGATTTTAGTGGAAAAAAATCTAAAATAACCCTAAAAGGTCCAAT
*
19220 TTAGGCATGAAATCA
66 TTAGGCATAAAATCA
*
19235 CTAATATGA-CTCTAAAAGTTTGATTTTAGT
1 CTAATACGACCT-TAAAAGTTTGATTTTAGT
19265 TAAGCTAACT
Statistics
Matches: 93, Mismatches: 15, Indels: 3
0.84 0.14 0.03
Matches are distributed among these distances:
79 29 0.31
80 64 0.69
ACGTcount: A:0.38, C:0.14, G:0.17, T:0.31
Consensus pattern (80 bp):
CTAATACGACCTTAAAAGTTTGATTTTAGTGGAAAAAAATCTAAAATAACCCTAAAAGGTCCAAT
TTAGGCATAAAATCA
Found at i:21120 original size:15 final size:15
Alignment explanation
Indices: 21100--21130 Score: 62
Period size: 15 Copynumber: 2.1 Consensus size: 15
21090 TTGCACCATT
21100 ATCAGTCTCAGATAA
1 ATCAGTCTCAGATAA
21115 ATCAGTCTCAGATAA
1 ATCAGTCTCAGATAA
21130 A
1 A
21131 GTTATTAGAG
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.42, C:0.19, G:0.13, T:0.26
Consensus pattern (15 bp):
ATCAGTCTCAGATAA
Found at i:22441 original size:14 final size:15
Alignment explanation
Indices: 22422--22450 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
22412 TAAAATTTTT
22422 AAATT-ATTTTAAAA
1 AAATTAATTTTAAAA
22436 AAATTAATTTTAAAA
1 AAATTAATTTTAAAA
22451 CTTGCATTAA
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 5 0.36
15 9 0.64
ACGTcount: A:0.59, C:0.00, G:0.00, T:0.41
Consensus pattern (15 bp):
AAATTAATTTTAAAA
Found at i:22595 original size:16 final size:16
Alignment explanation
Indices: 22562--22595 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
22552 TTTATTTTAA
**
22562 TTTTAATTTTTATGAT
1 TTTTAATTTTTAAAAT
22578 TTTTAATTTTTAAAAT
1 TTTTAATTTTTAAAAT
22594 TT
1 TT
22596 AAACACAATC
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.29, C:0.00, G:0.03, T:0.68
Consensus pattern (16 bp):
TTTTAATTTTTAAAAT
Found at i:22720 original size:22 final size:24
Alignment explanation
Indices: 22682--22725 Score: 74
Period size: 22 Copynumber: 1.9 Consensus size: 24
22672 CTTAAAATTA
22682 TAATTATTTATATAAAATATTTTT
1 TAATTATTTATATAAAATATTTTT
22706 TAATT-TTTAT-TAAAATATTT
1 TAATTATTTATATAAAATATTT
22726 AATTTTATAA
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
22 10 0.50
23 5 0.25
24 5 0.25
ACGTcount: A:0.41, C:0.00, G:0.00, T:0.59
Consensus pattern (24 bp):
TAATTATTTATATAAAATATTTTT
Found at i:22733 original size:18 final size:18
Alignment explanation
Indices: 22704--22738 Score: 54
Period size: 17 Copynumber: 1.9 Consensus size: 18
22694 TAAAATATTT
22704 TTTAATTTTTATTAAAATA
1 TTTAATTTTTA-TAAAATA
22723 TTTAA-TTTTATAAAAT
1 TTTAATTTTTATAAAAT
22739 TAAAAATATT
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
17 6 0.38
18 5 0.31
19 5 0.31
ACGTcount: A:0.43, C:0.00, G:0.00, T:0.57
Consensus pattern (18 bp):
TTTAATTTTTATAAAATA
Found at i:22763 original size:24 final size:24
Alignment explanation
Indices: 22695--22770 Score: 77
Period size: 24 Copynumber: 3.2 Consensus size: 24
22685 TTATTTATAT
*
22695 AAAATATTT--TTTAATTTTTATT-
1 AAAATATTTAATTTAA-TTTAATTA
* **
22717 AAAATATTTAATTTTATAAAATTA
1 AAAATATTTAATTTAATTTAATTA
22741 AAAATATTTAATTTAATTTAATTA
1 AAAATATTTAATTTAATTTAATTA
*
22765 TAAATA
1 AAAATA
22771 AATAAACATA
Statistics
Matches: 43, Mismatches: 8, Indels: 4
0.78 0.15 0.07
Matches are distributed among these distances:
22 9 0.21
23 4 0.09
24 30 0.70
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (24 bp):
AAAATATTTAATTTAATTTAATTA
Found at i:22811 original size:16 final size:16
Alignment explanation
Indices: 22788--22833 Score: 51
Period size: 16 Copynumber: 2.9 Consensus size: 16
22778 ATAACACATC
22788 AATT-AAATA-AATAAT
1 AATTAAAATATAA-AAT
22803 AATTAAAATATAAAAT
1 AATTAAAATATAAAAT
*
22819 AATAAAAATCATAAA
1 AATTAAAAT-ATAAA
22834 TCAAATATCG
Statistics
Matches: 27, Mismatches: 1, Indels: 4
0.84 0.03 0.12
Matches are distributed among these distances:
15 4 0.15
16 16 0.59
17 7 0.26
ACGTcount: A:0.70, C:0.02, G:0.00, T:0.28
Consensus pattern (16 bp):
AATTAAAATATAAAAT
Found at i:23448 original size:8 final size:8
Alignment explanation
Indices: 23437--23461 Score: 50
Period size: 8 Copynumber: 3.1 Consensus size: 8
23427 GTTTTTTTAC
23437 TTATTATT
1 TTATTATT
23445 TTATTATT
1 TTATTATT
23453 TTATTATT
1 TTATTATT
23461 T
1 T
23462 ACTTTATTCG
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 17 1.00
ACGTcount: A:0.24, C:0.00, G:0.00, T:0.76
Consensus pattern (8 bp):
TTATTATT
Found at i:23467 original size:20 final size:20
Alignment explanation
Indices: 23431--23469 Score: 53
Period size: 20 Copynumber: 1.9 Consensus size: 20
23421 TTTTTTGTTT
*
23431 TTTTACTTATTATTTTATTA
1 TTTTACTTATTACTTTATTA
23451 TTTTA-TTATTTACTTTATT
1 TTTTACTTA-TTACTTTATT
23470 CGTTTTCTGC
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
19 3 0.18
20 14 0.82
ACGTcount: A:0.23, C:0.05, G:0.00, T:0.72
Consensus pattern (20 bp):
TTTTACTTATTACTTTATTA
Found at i:25385 original size:19 final size:19
Alignment explanation
Indices: 25328--25387 Score: 59
Period size: 19 Copynumber: 3.2 Consensus size: 19
25318 AGATTATTCT
* **
25328 TTATTATATATAATGCATA
1 TTATTATATTTAATATATA
* *
25347 TAAGTATATTT-ATATAATA
1 TTATTATATTTAATAT-ATA
25366 TTATTATATTTAATATATA
1 TTATTATATTTAATATATA
25385 TTA
1 TTA
25388 AAAATAAAAA
Statistics
Matches: 32, Mismatches: 7, Indels: 4
0.74 0.16 0.09
Matches are distributed among these distances:
18 2 0.06
19 26 0.81
20 4 0.12
ACGTcount: A:0.43, C:0.02, G:0.03, T:0.52
Consensus pattern (19 bp):
TTATTATATTTAATATATA
Found at i:25840 original size:15 final size:14
Alignment explanation
Indices: 25806--25835 Score: 53
Period size: 13 Copynumber: 2.2 Consensus size: 14
25796 AATTTTAAAA
25806 ATAATTTTTATATT
1 ATAATTTTTATATT
25820 ATAA-TTTTATATT
1 ATAATTTTTATATT
25833 ATA
1 ATA
25836 TAATTAAATT
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 12 0.75
14 4 0.25
ACGTcount: A:0.40, C:0.00, G:0.00, T:0.60
Consensus pattern (14 bp):
ATAATTTTTATATT
Found at i:25897 original size:5 final size:5
Alignment explanation
Indices: 25887--25956 Score: 58
Period size: 5 Copynumber: 14.6 Consensus size: 5
25877 AAATATTATT
* * * *
25887 TTAAA TTAAA TTAAT TTAAA TTAAA --AAA TTTAAT TTAAT TTAAT TTAAA
1 TTAAA TTAAA TTAAA TTAAA TTAAA TTAAA -TTAAA TTAAA TTAAA TTAAA
*
25936 TT-TA TTAAA TTAAA -TAAA TTA
1 TTAAA TTAAA TTAAA TTAAA TTA
25957 TCCTATGGTT
Statistics
Matches: 54, Mismatches: 6, Indels: 10
0.77 0.09 0.14
Matches are distributed among these distances:
3 3 0.06
4 7 0.13
5 42 0.78
6 2 0.04
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (5 bp):
TTAAA
Found at i:25955 original size:29 final size:29
Alignment explanation
Indices: 25886--25955 Score: 72
Period size: 29 Copynumber: 2.4 Consensus size: 29
25876 TAAATATTAT
25886 TTTAAATTAAA-TTAATTTAAATTAAAAAA
1 TTTAAA-TAAATTTAATTTAAATTAAAAAA
* * **
25915 TTTAATTTAATTTAATTTAAATTTATTAAA
1 TTTAAATAAATTTAATTTAAA-TTAAAAAA
25945 -TTAAATAAATT
1 TTTAAATAAATT
25956 ATCCTATGGT
Statistics
Matches: 33, Mismatches: 6, Indels: 4
0.77 0.14 0.09
Matches are distributed among these distances:
28 3 0.09
29 24 0.73
30 6 0.18
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (29 bp):
TTTAAATAAATTTAATTTAAATTAAAAAA
Found at i:29217 original size:21 final size:22
Alignment explanation
Indices: 29179--29224 Score: 58
Period size: 21 Copynumber: 2.1 Consensus size: 22
29169 ATCTGTTGAA
* **
29179 ACTCCACCTGTTTTGGAGTA-T
1 ACTCCACCTGCTGCGGAGTACT
29200 ACTCCACCTGCTGCGGAGTACT
1 ACTCCACCTGCTGCGGAGTACT
29222 ACT
1 ACT
29225 TGTCTGAACA
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
21 17 0.81
22 4 0.19
ACGTcount: A:0.20, C:0.30, G:0.20, T:0.30
Consensus pattern (22 bp):
ACTCCACCTGCTGCGGAGTACT
Found at i:37306 original size:2 final size:2
Alignment explanation
Indices: 37299--37339 Score: 82
Period size: 2 Copynumber: 20.5 Consensus size: 2
37289 TATCAGCTGG
37299 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
37340 CACACACGTA
Statistics
Matches: 39, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 39 1.00
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (2 bp):
AT
Found at i:37567 original size:20 final size:20
Alignment explanation
Indices: 37530--37570 Score: 55
Period size: 20 Copynumber: 2.0 Consensus size: 20
37520 GATATTTATA
* **
37530 TTTAATATATATTTAAATTT
1 TTTAAAATATATAAAAATTT
37550 TTTAAAATATATAAAAATTT
1 TTTAAAATATATAAAAATTT
37570 T
1 T
37571 AAAAAATTAA
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (20 bp):
TTTAAAATATATAAAAATTT
Found at i:37622 original size:17 final size:17
Alignment explanation
Indices: 37581--37616 Score: 54
Period size: 17 Copynumber: 2.1 Consensus size: 17
37571 AAAAAATTAA
*
37581 ATATAATTATATTAGAT
1 ATATATTTATATTAGAT
*
37598 ATATATTTATATTTGAT
1 ATATATTTATATTAGAT
37615 AT
1 AT
37617 TCATTTCAAA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.42, C:0.00, G:0.06, T:0.53
Consensus pattern (17 bp):
ATATATTTATATTAGAT
Found at i:38528 original size:15 final size:15
Alignment explanation
Indices: 38508--38536 Score: 58
Period size: 15 Copynumber: 1.9 Consensus size: 15
38498 CTTTTTTATT
38508 TATTAATATTAATTA
1 TATTAATATTAATTA
38523 TATTAATATTAATT
1 TATTAATATTAATT
38537 TAATATTAAA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.45, C:0.00, G:0.00, T:0.55
Consensus pattern (15 bp):
TATTAATATTAATTA
Found at i:40269 original size:14 final size:15
Alignment explanation
Indices: 40236--40273 Score: 51
Period size: 14 Copynumber: 2.5 Consensus size: 15
40226 AATTTTAAAC
40236 AAACATAAATTAAATA
1 AAACA-AAATTAAATA
*
40252 AAACAAAA-TAAATG
1 AAACAAAATTAAATA
40266 AAACAAAA
1 AAACAAAA
40274 ATTGGTCCAT
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
14 13 0.62
15 3 0.14
16 5 0.24
ACGTcount: A:0.74, C:0.08, G:0.03, T:0.16
Consensus pattern (15 bp):
AAACAAAATTAAATA
Done.