Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Scaffold1033
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 16766
ACGTcount: A:0.31, C:0.17, G:0.21, T:0.31
Found at i:3511 original size:22 final size:23
Alignment explanation
Indices: 3463--3512 Score: 59
Period size: 23 Copynumber: 2.3 Consensus size: 23
3453 TATTTTTTTT
* *
3463 ATTTTTTAAAACAAATAAAGATC
1 ATTTTTTAAAACAAATAAACATA
3486 ATTTTTTAAAA-AAA-AAACATA
1 ATTTTTTAAAACAAATAAACATA
*
3507 AATTTT
1 ATTTTT
3513 GAACTTTTCT
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
21 10 0.42
22 3 0.12
23 11 0.46
ACGTcount: A:0.54, C:0.06, G:0.02, T:0.38
Consensus pattern (23 bp):
ATTTTTTAAAACAAATAAACATA
Found at i:4060 original size:17 final size:17
Alignment explanation
Indices: 4038--4073 Score: 54
Period size: 17 Copynumber: 2.1 Consensus size: 17
4028 CGTTTCATAT
* *
4038 TTTTTCTTTTTTTTTTC
1 TTTTTCTTTCTTTCTTC
4055 TTTTTCTTTCTTTCTTC
1 TTTTTCTTTCTTTCTTC
4072 TT
1 TT
4074 CATCTTCCTT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.00, C:0.17, G:0.00, T:0.83
Consensus pattern (17 bp):
TTTTTCTTTCTTTCTTC
Found at i:9482 original size:20 final size:20
Alignment explanation
Indices: 9457--9581 Score: 97
Period size: 20 Copynumber: 5.7 Consensus size: 20
9447 TTTTAACTAT
9457 ATGTATCGATACATTGAAAA
1 ATGTATCGATACATTGAAAA
9477 ATGTATCGATACATCTGGGTAAAAAGATAGA
1 ATGTATCGATACAT-T--G-----A-A-A-A
*
9508 ATGTATCGATACATTGAAGA
1 ATGTATCGATACATTGAAAA
* * *
9528 ATGTATCGATACATTCATAC
1 ATGTATCGATACATTGAAAA
* *
9548 ATGTATCGATTCATTGAAGA
1 ATGTATCGATACATTGAAAA
9568 ATGTATCGATACAT
1 ATGTATCGATACAT
9582 CTGGGTACTT
Statistics
Matches: 83, Mismatches: 11, Indels: 22
0.72 0.09 0.19
Matches are distributed among these distances:
20 59 0.71
21 1 0.01
22 1 0.01
23 2 0.02
28 2 0.02
29 1 0.01
30 2 0.02
31 15 0.18
ACGTcount: A:0.39, C:0.12, G:0.18, T:0.31
Consensus pattern (20 bp):
ATGTATCGATACATTGAAAA
Found at i:10334 original size:49 final size:49
Alignment explanation
Indices: 10277--10407 Score: 226
Period size: 49 Copynumber: 2.7 Consensus size: 49
10267 GAGAAAAATG
* *
10277 CCAATGTGCTAATTCAAGGCTAGTGACATTGGGTTAAGGGAAAAGTGGA
1 CCAATGTGCTGATTCAAGGCCAGTGACATTGGGTTAAGGGAAAAGTGGA
10326 CCAATGTGCTGATTCAAGGCCAGTGACATTGGGTTAAGGGAAAAGTGGA
1 CCAATGTGCTGATTCAAGGCCAGTGACATTGGGTTAAGGGAAAAGTGGA
* *
10375 CAAATGTGGTGATTCAAGGCCAGTGACATTGGG
1 CCAATGTGCTGATTCAAGGCCAGTGACATTGGG
10408 CTAAAAAAGG
Statistics
Matches: 78, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
49 78 1.00
ACGTcount: A:0.31, C:0.14, G:0.32, T:0.24
Consensus pattern (49 bp):
CCAATGTGCTGATTCAAGGCCAGTGACATTGGGTTAAGGGAAAAGTGGA
Found at i:10556 original size:25 final size:25
Alignment explanation
Indices: 10522--10571 Score: 82
Period size: 25 Copynumber: 2.0 Consensus size: 25
10512 AAAAAAAGGT
* *
10522 GCCACTAACTTATGTGGGCTTTGAA
1 GCCACCAACTTATGTGGGCCTTGAA
10547 GCCACCAACTTATGTGGGCCTTGAA
1 GCCACCAACTTATGTGGGCCTTGAA
10572 AGGATGCCAA
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
25 23 1.00
ACGTcount: A:0.24, C:0.24, G:0.24, T:0.28
Consensus pattern (25 bp):
GCCACCAACTTATGTGGGCCTTGAA
Found at i:10598 original size:28 final size:28
Alignment explanation
Indices: 10559--11298 Score: 622
Period size: 28 Copynumber: 25.3 Consensus size: 28
10549 CACCAACTTA
* *
10559 TGTGGGCCTTGAAAGGATGCCAATGACT
1 TGTGGGCTTTGAAAGGATGCCACTGACT
*
10587 TATGGGCTTTGAAAGGATGCCACTGACT
1 TGTGGGCTTTGAAAGGATGCCACTGACT
*
10615 TGTGGGCTTTGAAAGGATGCCACTAACT
1 TGTGGGCTTTGAAAGGATGCCACTGACT
* * *
10643 TGTGGACTTTGAAAAGATGCCACTGATT
1 TGTGGGCTTTGAAAGGATGCCACTGACT
* * *
10671 TGTGGGCTTTAAAAAGATGCCACTGATTT
1 TGTGGGCTTTGAAAGGATGCCACTGA-CT
*
10700 GTGTGGGCTTTGAGAAGGATGCCACTAACT
1 -TGTGGGCTTTGA-AAGGATGCCACTGACT
* * * *
10730 TGT-GGCTTTAAGAAGCATGCAATTGACT
1 TGTGGGCTTTGA-AAGGATGCCACTGACT
10758 TGTGGGCTTTGAAAGGATGCCACTGACT
1 TGTGGGCTTTGAAAGGATGCCACTGACT
*
10786 TGTGGGCTTTGAAAAGATGCCACTGACT
1 TGTGGGCTTTGAAAGGATGCCACTGACT
* *
10814 TGTGGGCTTTGAAAAGATGCCACTGATTT
1 TGTGGGCTTTGAAAGGATGCCACTGA-CT
* *
10843 GTGTGGGTTTTGAGAAGGATGTCACTGACT
1 -TGTGGGCTTTGA-AAGGATGCCACTGACT
* *
10873 CGTGGGCTTTGAGAAGGATGCCACTAACT
1 TGTGGGCTTTGA-AAGGATGCCACTGACT
* * **
10902 TGTGGGTTTTAAGAAGGATGCCACTGTTT
1 TGTGGGCTTTGA-AAGGATGCCACTGACT
*
10931 TGTGGGTTTTGAAAGGATGCCACTGACT
1 TGTGGGCTTTGAAAGGATGCCACTGACT
* *
10959 TGTGGGCTTTGAAATGGGTTGTCA-TCGACTT
1 TGTGGGCTTTGAAA--GGATGCCACT-GAC-T
* *
10990 ATGTAGGCTTTGAAATAGGTTGCCACTGACT
1 -TGTGGGCTTTG-AA-AGGATGCCACTGACT
* * * *
11021 TGTGTAGGCTTTCAAATGAGTTGTCACCGACT
1 TGTG--GGCTTTGAAA-G-GATGCCACTGACT
* *
11053 TGCATGGGCTTTGAAATGATGCCATTGACTT
1 TG--TGGGCTTTGAAAGGATGCCACTGAC-T
* * **
11084 GTGTGGGCTTTCAAATGGGTTGCCACCAACTT
1 -TGTGGGCTTTGAAA--GGATGCCACTGAC-T
* * *
11116 GTGTGGGCTTTCAAATGAGTTGCCATTGACT
1 -TGTGGGCTTTGAAA-G-GATGCCACTGACT
*
11147 TGTGTAGGCTTTGAAATGATGCCACTGACT
1 TGTG--GGCTTTGAAAGGATGCCACTGACT
** * *
11177 TGTGGGCTTAAAAAGGGGTGCTACTGACT
1 TGTGGGCTTTGAAA-GGATGCCACTGACT
11206 TGTGGGCTTTGAAAGGATGCCACTGACT
1 TGTGGGCTTTGAAAGGATGCCACTGACT
* * * * *
11234 TATGGTCTTTAAAAAGG-TGCCACAGAGT
1 TGTGGGCTTT-GAAAGGATGCCACTGACT
* * * * *
11262 TGTGGACTTTAAAAGGGTGCCACAGAGT
1 TGTGGGCTTTGAAAGGATGCCACTGACT
11290 TGTGGGCTT
1 TGTGGGCTT
11299 AAAAGAGTGC
Statistics
Matches: 592, Mismatches: 89, Indels: 62
0.80 0.12 0.08
Matches are distributed among these distances:
27 6 0.01
28 279 0.47
29 101 0.17
30 75 0.13
31 32 0.05
32 93 0.16
33 3 0.01
34 3 0.01
ACGTcount: A:0.23, C:0.16, G:0.29, T:0.31
Consensus pattern (28 bp):
TGTGGGCTTTGAAAGGATGCCACTGACT
Found at i:10759 original size:115 final size:113
Alignment explanation
Indices: 10589--11298 Score: 499
Period size: 115 Copynumber: 6.1 Consensus size: 113
10579 CAATGACTTA
* * *
10589 TGGGCTTTGAAAGGATGCCACTGACTTGTGGGCTTTGA-AAGGATGCCACTAACTTGTGGACTTT
1 TGGGCTTTGAAAGGATGCCACTAACTTGTGGGCTTTGAGAAGGATG-CACTGACTTGTGGGCTTT
* *
10653 GAAAAGATGCCACTGATTTGTGGGCTTTAAAAAGATGCCACTGATTTGTG
65 GAAAGGATGCCACTGACTTGTGGGCTTTAAAAAGATGCCACTGATTT-TG
* * *
10703 TGGGCTTTGAGAAGGATGCCACTAACTTGT-GGCTTTAAGAAGCATGCAATTGACTTGTGGGCTT
1 TGGGCTTTGA-AAGGATGCCACTAACTTGTGGGCTTTGAGAAGGATGC-ACTGACTTGTGGGCTT
* *
10767 TGAAAGGATGCCACTGACTTGTGGGCTTTGAAAAGATGCCACTGA-CTTG
64 TGAAAGGATGCCACTGACTTGTGGGCTTTAAAAAGATGCCACTGATTTTG
* ** * *
10816 TGGGCTTTGAAAAGATGCCACTGATTTGTGTGGGTTTTGAGAAGGATGTCACTGACTCGTGGGCT
1 TGGGCTTTGAAAGGATGCCACT-AACT-TGTGGGCTTTGAGAAGGATG-CACTGACTTGTGGGCT
* * *
10881 TTGAGAAGGATGCCACTAACTTGTGGGTTTTAAGAAGGATGCCACTG-TTTTG
63 TTGA-AAGGATGCCACTGACTTGTGGGCTTTAA-AAAGATGCCACTGATTTTG
* * * *
10933 TGGGTTTTGAAAGGATGCCACTGACTTGTGGGCTTTGA-AATGGGTTGTCA-TCGACTTATGTAG
1 TGGGCTTTGAAAGGATGCCACTAACTTGTGGGCTTTGAGAA--GGATG-CACT-GAC-T-TGTGG
* * * * * *
10996 GCTTTGAAATAGGTTGCCACTGACTTGTGTAGGCTTTCAAATGAGTTGTCACCGA-CTTG
60 GCTTTG-AA-AGGATGCCACTGACTTGTG--GGCTTT-AAA-AAGATGCCACTGATTTTG
* * * * * **
11055 CATGGGCTTTGAAATGATGCCATTGACTTGTGTGGGCTTTCA-AATGGGTTGCCACCAACTTGTG
1 --TGGGCTTTGAAAGGATGCCACTAAC-T-TGTGGGCTTTGAGAA--GGATG-CACTGAC-T-TG
* * * * * *
11119 TGGGCTTTCAAATGAGTTGCCATTGACTTGTGTAGGCTTTGAAATGATGCCACTGA-CTTG
57 TGGGCTTTGAAA-G-GATGCCACTGACTTGTG--GGCTTTAAAAAGATGCCACTGATTTTG
** * * * * *
11179 TGGGCTTAAAAAGGGGTGCTACTGACTTGTGGGCTTTGA-AAGGATGCCACTGACTTATGGTCTT
1 TGGGCTTTGAAA-GGATGCCACTAACTTGTGGGCTTTGAGAAGGATG-CACTGACTTGTGGGCTT
* * * * * * * *
11243 TAAAAAGG-TGCCACAGAGTTGTGGACTTTAAAAGGGTGCCACAGA-GTTG
64 T-GAAAGGATGCCACTGACTTGTGGGCTTTAAAAAGATGCCACTGATTTTG
11292 TGGGCTT
1 TGGGCTT
11299 AAAAGAGTGC
Statistics
Matches: 485, Mismatches: 80, Indels: 63
0.77 0.13 0.10
Matches are distributed among these distances:
112 11 0.02
113 41 0.08
114 24 0.05
115 133 0.27
116 38 0.08
117 45 0.09
118 14 0.03
119 28 0.06
121 19 0.04
122 23 0.05
123 9 0.02
124 35 0.07
125 6 0.01
126 59 0.12
ACGTcount: A:0.23, C:0.16, G:0.29, T:0.32
Consensus pattern (113 bp):
TGGGCTTTGAAAGGATGCCACTAACTTGTGGGCTTTGAGAAGGATGCACTGACTTGTGGGCTTTG
AAAGGATGCCACTGACTTGTGGGCTTTAAAAAGATGCCACTGATTTTG
Found at i:10760 original size:143 final size:144
Alignment explanation
Indices: 10559--11293 Score: 674
Period size: 143 Copynumber: 5.0 Consensus size: 144
10549 CACCAACTTA
* * *
10559 TGTGGGCCTTGA-AAGGATGCCAATGACTTATGGGCTTTGA-AAGGATGCCACTGACTTGTGGGC
1 TGTGGGCTTTGAGAAGGATGCCACTGACTTGTGGGCTTTGAGAAGGATGCCACTGACTTGTGGGC
* * *
10622 TTTGAAAGGATGCCACTAACTTGTGGACTTTGAAAAGATGCCACTGATTTGTGGGCTTTAAAAAG
66 TTTGAAAGGATGCCACTGACTTGTGGGCTTTGAAAAGATGCCACTGACTTGTGGGCTTTAAAAAG
10687 ATGCCACTGATTTG
131 ATGCCACTGATTTG
* * * * *
10701 TGTGGGCTTTGAGAAGGATGCCACTAACTTGT-GGCTTTAAGAAGCATGCAATTGACTTGTGGGC
1 TGTGGGCTTTGAGAAGGATGCCACTGACTTGTGGGCTTTGAGAAGGATGCCACTGACTTGTGGGC
*
10765 TTTGAAAGGATGCCACTGACTTGTGGGCTTTGAAAAGATGCCACTGACTTGTGGGCTTTGAAAAG
66 TTTGAAAGGATGCCACTGACTTGTGGGCTTTGAAAAGATGCCACTGACTTGTGGGCTTTAAAAAG
10830 ATGCCACTGATTTG
131 ATGCCACTGATTTG
* * * * *
10844 TGTGGGTTTTGAGAAGGATGTCACTGACTCGTGGGCTTTGAGAAGGATGCCACTAACTTGTGGGT
1 TGTGGGCTTTGAGAAGGATGCCACTGACTTGTGGGCTTTGAGAAGGATGCCACTGACTTGTGGGC
* ** * *
10909 TTTAAGAAGGATGCCACTGTTTTGTGGGTTTTGAAAGGATGCCACTGACTTGTGGGCTTTGAAAT
66 TTTGA-AAGGATGCCACTGACTTGTGGGCTTTGAAAAGATGCCACTGACTTGTGGGCTTT-AAA-
** * * * *
10974 GGGTTGTCA-TCGACTTA
128 AAGATGCCACT-GATTTG
* * * * * * *
10991 TGTAGGCTTTGAAATAGGTTGCCACTGACTTGTGTAGGCTTTCA-AATGAGTTGTCACCGACTTG
1 TGTGGGCTTTGAGA-AGGATGCCACTGACTTGTG--GGCTTTGAGAA-G-GATGCCACTGACTTG
* * * * * **
11055 CATGGGCTTTGAAATGATGCCATTGACTTGTGTGGGCTTTCAAATGGGTTGCCACCAACTTGTGT
61 --TGGGCTTTGAAAGGATGCCACTGAC-T-TGTGGGCTTTGAAA--AGATGCCACTGAC-T-TGT
* * * *
11120 GGGCTTTCAAATGAGTTGCCATTGACTTG
118 GGGCTTT-AAA-AAGATGCCACTGATTTG
* * * * * *
11149 TGTAGGCTTTGA-AATGATGCCACTGACTTGTGGGC-TTAAAAAGGGGTGCTACTGACTTGTGGG
1 TGTGGGCTTTGAGAAGGATGCCACTGACTTGTGGGCTTTGAGAA-GGATGCCACTGACTTGTGGG
* * * * * * * *
11212 CTTTGAAAGGATGCCACTGACTTATGGTCTTTAAAAAGGTGCCACAGAGTTGTGGACTTTAAAAG
65 CTTTGAAAGGATGCCACTGACTTGTGGGCTTTGAAAAGATGCCACTGACTTGTGGGCTTTAAAAA
* * *
11277 GGTGCCACAGAGTTG
130 GATGCCACTGATTTG
11292 TG
1 TG
11294 GGCTTAAAAG
Statistics
Matches: 486, Mismatches: 85, Indels: 43
0.79 0.14 0.07
Matches are distributed among these distances:
142 18 0.04
143 152 0.31
144 33 0.07
145 59 0.12
146 4 0.01
147 28 0.06
148 16 0.03
149 13 0.03
150 9 0.02
151 34 0.07
152 11 0.02
153 23 0.05
154 18 0.04
156 27 0.06
157 2 0.00
158 38 0.08
159 1 0.00
ACGTcount: A:0.24, C:0.16, G:0.29, T:0.31
Consensus pattern (144 bp):
TGTGGGCTTTGAGAAGGATGCCACTGACTTGTGGGCTTTGAGAAGGATGCCACTGACTTGTGGGC
TTTGAAAGGATGCCACTGACTTGTGGGCTTTGAAAAGATGCCACTGACTTGTGGGCTTTAAAAAG
ATGCCACTGATTTG
Found at i:10999 original size:32 final size:32
Alignment explanation
Indices: 10955--11164 Score: 196
Period size: 32 Copynumber: 6.7 Consensus size: 32
10945 GGATGCCACT
*
10955 GACTTGTG--GGCTTTGAAATGGGTTGTCATC
1 GACTTGTGTAGGCTTTGAAATGGGTTGCCATC
* *
10985 GACTTATGTAGGCTTTGAAATAGGTTGCCA-C
1 GACTTGTGTAGGCTTTGAAATGGGTTGCCATC
* * * *
11016 TGACTTGTGTAGGCTTTCAAATGAGTTGTCACC
1 -GACTTGTGTAGGCTTTGAAATGGGTTGCCATC
** * * *
11049 GACTTGCATGGGCTTTGAAAT--GATGCCATT
1 GACTTGTGTAGGCTTTGAAATGGGTTGCCATC
* * *
11079 GACTTGTGTGGGCTTTCAAATGGGTTGCCACC
1 GACTTGTGTAGGCTTTGAAATGGGTTGCCATC
* * * * *
11111 AACTTGTGTGGGCTTTCAAATGAGTTGCCATT
1 GACTTGTGTAGGCTTTGAAATGGGTTGCCATC
11143 GACTTGTGTAGGCTTTGAAATG
1 GACTTGTGTAGGCTTTGAAATG
11165 ATGCCACTGA
Statistics
Matches: 145, Mismatches: 29, Indels: 10
0.79 0.16 0.05
Matches are distributed among these distances:
30 30 0.21
31 1 0.01
32 113 0.78
33 1 0.01
ACGTcount: A:0.21, C:0.16, G:0.28, T:0.35
Consensus pattern (32 bp):
GACTTGTGTAGGCTTTGAAATGGGTTGCCATC
Found at i:11018 original size:62 final size:61
Alignment explanation
Indices: 10938--11164 Score: 228
Period size: 62 Copynumber: 3.6 Consensus size: 61
10928 TTTTGTGGGT
* * *
10938 TTTGAAA-GGATGCCACTGACTTGTG-GGCTTTGAAATGGGTTGTCATCGACTTATGTAGGC
1 TTTGAAATGGTTGCCACTGACTTGTGAGGCTTTCAAATGGGTTGTCACCGACTTATGT-GGC
*
10998 TTTGAAATAGGTTGCCACTGACTTGTGTAGGCTTTCAAATGAGTTGTCACCGACTTGCATG-GGC
1 TTTGAAAT-GGTTGCCACTGACTTGTG-AGGCTTTCAAATGGGTTGTCACCGACTT--ATGTGGC
* * * * * *
11062 TTTGAAAT-GATGCCATTGACTTGTGTGGGCTTTCAAATGGGTTGCCACCAACTTGTGTGGGC
1 TTTGAAATGGTTGCCACTGACTTGTG-AGGCTTTCAAATGGGTTGTCACCGACTTATGT-GGC
* * *
11124 TTTCAAATGAGTTGCCATTGACTTGTGTAGGCTTTGAAATG
1 TTTGAAATG-GTTGCCACTGACTTGTG-AGGCTTTCAAATG
11165 ATGCCACTGA
Statistics
Matches: 142, Mismatches: 15, Indels: 16
0.82 0.09 0.09
Matches are distributed among these distances:
60 9 0.06
62 67 0.47
64 63 0.44
66 3 0.02
ACGTcount: A:0.22, C:0.16, G:0.28, T:0.34
Consensus pattern (61 bp):
TTTGAAATGGTTGCCACTGACTTGTGAGGCTTTCAAATGGGTTGTCACCGACTTATGTGGC
Found at i:11093 original size:94 final size:94
Alignment explanation
Indices: 10948--11180 Score: 272
Period size: 94 Copynumber: 2.5 Consensus size: 94
10938 TTTGAAAGGA
* * * * * *
10948 TGCCACTGACTTG--TGGGCTTTGAAATGGGTTGTCATCGACTTATGTAGGCTTTGAAATAGGTT
1 TGCCACCGACTTGCATGGGCTTTGAAAT--GATGCCATTGACTTGTGTAGGCTTTCAAATAGGTT
**
11011 GCCACTGACTTGTGTAGGCTTTCAAATGAGT
64 GCCACCAACTTGTGTAGGCTTTCAAATGAGT
* * *
11042 TGTCACCGACTTGCATGGGCTTTGAAATGATGCCATTGACTTGTGTGGGCTTTCAAATGGGTTGC
1 TGCCACCGACTTGCATGGGCTTTGAAATGATGCCATTGACTTGTGTAGGCTTTCAAATAGGTTGC
*
11107 CACCAACTTGTGTGGGCTTTCAAATGAGT
66 CACCAACTTGTGTAGGCTTTCAAATGAGT
** ** * *
11136 TGCCATTGACTTGTGTAGGCTTTGAAATGATGCCACTGACTTGTG
1 TGCCACCGACTTGCATGGGCTTTGAAATGATGCCATTGACTTGTG
11181 GGCTTAAAAA
Statistics
Matches: 118, Mismatches: 19, Indels: 4
0.84 0.13 0.03
Matches are distributed among these distances:
94 105 0.89
96 13 0.11
ACGTcount: A:0.21, C:0.18, G:0.27, T:0.34
Consensus pattern (94 bp):
TGCCACCGACTTGCATGGGCTTTGAAATGATGCCATTGACTTGTGTAGGCTTTCAAATAGGTTGC
CACCAACTTGTGTAGGCTTTCAAATGAGT
Found at i:11207 original size:29 final size:28
Alignment explanation
Indices: 11166--11341 Score: 158
Period size: 28 Copynumber: 6.2 Consensus size: 28
11156 TTTGAAATGA
11166 TGCCACTGACTTGTGGGCTTAAAAAGGGG
1 TGCCACTGACTTGTGGGCTTAAAAA-GGG
* ** *
11195 TGCTACTGACTTGTGGGCTTTGAAAGGA
1 TGCCACTGACTTGTGGGCTTAAAAAGGG
* *
11223 TGCCACTGACTTATGGTCTTTAAAAA-GG
1 TGCCACTGACTTGTGGGC-TTAAAAAGGG
* * * *
11251 TGCCACAGAGTTGTGGACTTTAAAAGGG
1 TGCCACTGACTTGTGGGCTTAAAAAGGG
* * *
11279 TGCCACAGAGTTGTGGGCTT-AAAAGAG
1 TGCCACTGACTTGTGGGCTTAAAAAGGG
* * * *
11306 TGCCACGGAGTTGTGGACTTAAAAAGTGC
1 TGCCACTGACTTGTGGGCTTAAAAAG-GG
11335 TGCCACT
1 TGCCACT
11342 AAATCGTGGA
Statistics
Matches: 121, Mismatches: 22, Indels: 8
0.80 0.15 0.05
Matches are distributed among these distances:
27 30 0.25
28 58 0.48
29 33 0.27
ACGTcount: A:0.26, C:0.17, G:0.30, T:0.27
Consensus pattern (28 bp):
TGCCACTGACTTGTGGGCTTAAAAAGGG
Done.