genome.fa.s1035.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold1035
Parameters: 2 7 7 80 10 50 1000
Length:  92543

Tables:   1   2   

This is table  1  of  2  ( 132 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
345--402	19	2.9	20	82	14	59	50	0	0	50	1.00
370--416	22	2.2	21	88	3	67	57	0	0	42	0.98
367--420	17	3.2	17	80	12	51	59	0	0	40	0.98
571--605	17	2.1	17	88	0	52	57	0	0	42	0.99
571--631	26	2.4	25	76	13	61	54	0	0	45	1.00
933--967	3	11.7	3	93	0	61	31	34	2	31	1.73
1871--1895	12	2.1	12	100	0	50	60	0	0	40	0.97
2565--2605	15	2.9	14	85	7	55	51	0	0	48	1.00
2573--2605	15	2.3	14	94	5	57	45	0	0	54	0.99
3435--3492	20	2.8	21	80	15	59	60	1	1	36	1.17
3457--3526	22	3.2	23	70	11	67	61	1	4	32	1.24
3575--3635	6	10.8	6	76	16	60	65	1	1	31	1.12
3575--3631	22	2.6	21	84	13	71	66	1	1	29	1.12
3575--3633	16	3.9	16	69	22	56	66	1	1	30	1.12
3787--3835	24	2.0	24	92	0	80	40	0	0	59	0.98
3802--3863	17	3.5	18	79	16	60	48	0	0	51	1.00
3802--3864	18	3.5	17	76	21	58	49	0	0	50	1.00
3829--3868	20	2.0	20	85	9	55	55	0	0	45	0.99
4312--4376	31	2.1	32	85	2	87	49	0	0	50	1.00
4353--4392	19	2.0	20	85	4	55	45	0	0	55	0.99
4235--4420	94	2.0	94	79	5	205	44	0	1	53	1.14
4709--4768	30	2.0	30	96	0	111	36	1	3	58	1.25
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
8270--8320	4	12.5	4	76	12	50	70	0	5	23	1.09
9361--9403	16	2.6	17	81	7	61	72	0	0	27	0.85
9369--9436	18	3.7	18	72	16	59	66	0	2	30	1.07
10081--10114	17	2.0	17	88	0	50	29	2	20	47	1.65
12575--12623	18	2.9	18	85	8	59	61	2	0	36	1.08
12592--12625	17	1.9	18	94	5	61	55	0	0	44	0.99
12590--12656	31	2.2	31	84	12	93	55	0	0	44	0.99
12598--12648	15	3.2	17	71	18	56	52	0	0	47	1.00
12605--12668	14	4.4	14	73	21	51	46	0	0	53	1.00
12590--12661	30	2.4	30	84	13	87	52	0	0	47	1.00
12648--12717	34	2.2	32	85	12	90	30	0	4	65	1.11
12658--12706	20	2.3	23	86	13	70	28	0	4	67	1.09
12866--12952	31	2.6	34	78	14	99	48	0	0	51	1.00
13358--13448	42	2.2	41	86	5	121	46	4	6	42	1.50
15048--15082	2	17.5	2	100	0	70	48	0	0	51	1.00
15251--15290	12	3.3	12	92	0	62	50	7	0	42	1.30
15256--15290	8	4.4	8	96	0	52	51	5	0	42	1.25
15260--15293	2	17.0	2	93	0	59	50	2	0	47	1.16
15552--15590	20	1.9	21	89	5	62	56	5	5	33	1.43
18504--18544	2	20.5	2	100	0	82	51	0	0	48	1.00
19745--19796	14	3.3	16	76	13	54	50	0	0	50	1.00
21330--21423	31	2.9	34	81	13	103	43	0	1	55	1.06
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
21846--21894	21	2.4	20	80	12	55	42	0	0	57	0.99
21857--21898	21	2.0	21	90	9	68	40	0	0	59	0.97
23215--23278	21	2.8	21	76	11	56	39	0	0	60	0.97
23242--23297	16	3.4	17	75	24	66	42	0	0	57	0.99
23251--23300	14	3.3	14	75	20	55	44	0	0	56	0.99
23219--23299	33	2.8	27	72	24	67	40	0	0	59	0.98
23231--23307	17	4.6	16	72	19	59	38	1	0	59	1.06
23671--23716	23	2.0	23	91	0	74	30	2	19	47	1.61
23768--23804	18	2.0	19	89	5	58	16	0	5	78	0.93
24863--24916	24	2.3	24	78	9	67	40	9	0	50	1.35
29461--29587	48	2.6	48	81	4	159	17	12	41	28	1.86
30120--30187	29	2.6	27	78	19	72	30	0	4	64	1.13
30120--30185	28	2.4	29	80	16	86	30	0	4	65	1.13
30114--30162	18	2.7	18	78	9	64	32	0	4	63	1.13
30354--30449	47	2.1	46	81	13	108	57	2	0	40	1.10
30384--30449	24	2.8	24	77	20	77	56	0	0	43	0.99
30738--30828	32	2.7	33	81	10	96	47	0	1	51	1.07
30787--30832	21	2.4	18	82	13	56	41	0	0	58	0.98
30800--30854	27	2.0	27	83	13	69	38	0	1	60	1.08
32065--32117	13	3.9	14	80	9	58	9	13	0	77	0.99
32597--32651	23	2.4	23	75	6	58	72	3	1	21	1.09
32592--32648	22	2.6	23	76	15	66	71	3	1	22	1.10
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33512--33606	29	3.0	29	72	19	82	64	1	2	32	1.12
33511--33684	65	2.6	67	81	6	192	60	0	1	37	1.09
33590--33684	32	2.8	34	84	11	131	58	0	0	41	0.98
33578--33680	16	6.6	16	69	20	58	60	0	0	39	0.97
33513--33727	97	2.2	99	80	11	237	60	0	0	38	1.07
33591--33734	62	2.3	63	82	10	170	58	0	0	40	1.03
33890--34049	5	34.0	5	64	18	60	40	0	0	59	0.97
33901--34043	8	17.1	8	69	25	52	40	0	0	59	0.97
33901--34000	30	3.7	27	75	20	86	46	0	0	54	1.00
33889--34027	50	2.7	50	77	15	142	43	0	0	56	0.99
33991--34051	25	2.4	26	83	8	90	31	0	0	68	0.89
37323--37366	23	1.9	23	100	0	88	36	15	9	38	1.80
37478--37520	14	2.9	15	80	13	54	53	0	0	46	1.00
37471--37519	16	3.3	16	78	18	61	46	0	0	53	1.00
38742--38771	6	4.8	6	95	4	51	63	0	0	36	0.95
38742--38774	12	2.6	13	90	9	59	60	0	0	39	0.97
38728--38785	25	2.2	26	72	6	55	50	0	0	50	1.00
38824--38880	28	2.2	26	81	15	64	54	0	5	40	1.23
38880--38927	22	2.3	22	92	7	82	52	0	2	45	1.12
38880--38954	22	3.4	21	79	17	71	52	0	1	46	1.09
39730--39763	15	2.4	14	90	5	50	70	0	0	29	0.87
45701--45745	22	2.1	22	95	4	83	33	8	26	31	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45844--45872	15	1.9	15	100	0	58	62	0	0	37	0.96
45852--45893	21	2.0	22	85	4	59	71	0	2	26	0.98
51477--51532	23	2.4	23	73	5	60	35	0	1	62	1.06
51548--51653	38	2.8	40	81	9	116	40	2	0	56	1.14
51587--51624	11	3.5	11	85	0	58	36	0	0	63	0.95
51866--51930	28	2.3	29	81	7	80	55	3	0	41	1.15
55214--55244	16	1.9	16	93	0	53	61	0	0	38	0.96
55522--55570	8	6.1	8	87	0	62	51	10	0	38	1.36
55531--55565	2	17.5	2	87	0	52	51	5	0	42	1.25
55651--55698	22	2.2	23	78	17	57	31	0	0	68	0.90
62389--62765	59	6.4	59	85	4	478	37	31	14	16	1.88
62434--62523	26	3.2	26	65	24	65	38	35	12	13	1.82
62392--62764	177	2.1	176	87	2	543	38	31	14	16	1.88
66858--66887	2	15.0	2	100	0	60	50	0	0	50	1.00
67276--67330	6	9.7	6	77	15	55	32	0	0	67	0.91
67341--67383	19	2.3	18	88	4	59	48	6	0	44	1.29
67341--67374	17	1.9	18	88	5	52	47	2	0	50	1.16
67309--67375	26	2.4	28	73	9	75	47	1	0	50	1.10
70902--71027	16	8.5	15	73	20	95	40	0	0	58	1.03
70913--71025	28	3.9	28	74	13	86	41	0	0	57	1.05
70906--71025	59	2.0	60	85	6	163	41	0	0	57	1.04
72833--72876	15	2.9	15	86	0	61	75	2	0	22	0.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
72907--73035	8	14.7	9	69	17	67	41	0	0	58	1.04
72893--73064	59	3.2	54	74	20	157	41	0	0	57	1.03
72940--73052	33	3.2	33	81	14	113	41	0	0	57	1.05
72940--73064	32	3.6	33	81	12	135	41	0	0	57	1.04
74205--74261	22	2.6	22	97	0	105	17	19	8	54	1.68
76454--76496	14	2.9	14	81	18	52	55	0	0	44	0.99
76458--76496	16	2.6	14	84	11	51	58	0	0	41	0.98
76915--76961	20	2.3	20	79	13	53	46	0	0	53	1.00
76917--76972	18	3.3	18	72	27	59	50	0	0	50	1.00
76950--77050	43	2.4	45	75	11	113	35	1	1	60	1.19

Tables:   1   2