genome.fa.s1039.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold1039
Parameters: 2 7 7 80 10 50 1000
Length:  112388

Tables:   1   

This is table  1  of  1  ( 65 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5533--5575	20	2.1	20	82	4	50	11	25	41	20	1.86
6014--6052	13	3.0	13	100	0	78	38	15	15	30	1.88
8122--8152	15	2.1	15	93	0	53	12	22	16	48	1.80
9955--9999	21	2.1	21	84	8	56	22	20	4	53	1.63
12219--12244	13	2.0	13	100	0	52	30	15	15	38	1.88
18996--19028	12	2.8	12	100	0	66	48	9	36	6	1.60
21625--22071	165	2.7	165	81	6	514	29	12	7	50	1.66
23419--23773	169	2.1	171	83	1	435	28	14	19	37	1.91
23994--24482	157	3.0	157	83	5	620	35	10	12	40	1.79
25888--25934	23	2.0	23	91	0	76	38	19	10	31	1.86
37290--37355	19	3.2	19	67	19	51	25	24	19	30	1.98
37124--37648	47	10.8	47	76	9	410	23	25	17	33	1.96
37131--37648	100	5.3	96	77	9	458	23	25	17	33	1.96
37124--37698	149	3.9	148	88	4	804	24	25	16	33	1.96
38456--38482	13	2.1	13	100	0	54	29	14	14	40	1.86
45637--46274	84	7.6	82	73	11	355	21	29	12	36	1.90
45779--45903	43	3.0	41	73	5	124	20	30	12	37	1.88
45637--46037	170	2.4	167	83	5	475	19	29	13	36	1.91
45736--46277	254	2.1	252	79	6	571	20	29	12	36	1.90
46245--46325	42	1.9	42	82	0	99	19	34	12	33	1.89
47686--47725	19	2.2	18	90	4	62	27	15	0	57	1.38
47600--48089	163	3.0	162	81	7	524	30	12	7	50	1.67
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47574--48090	164	3.1	164	80	8	473	29	12	7	50	1.68
48325--48365	18	2.3	18	87	8	57	21	0	2	75	0.92
49223--49585	170	2.1	172	81	3	412	30	12	18	38	1.88
49782--50254	165	3.0	156	78	11	477	35	10	13	41	1.78
52130--52205	38	2.0	38	100	0	152	44	13	7	34	1.72
55144--55239	20	4.8	20	81	6	115	31	14	13	40	1.85
69052--69128	5	16.0	5	76	15	58	83	14	2	0	0.76
69052--69128	8	8.0	10	77	18	58	83	14	2	0	0.76
69056--69123	11	6.3	11	79	14	70	83	13	2	0	0.75
69055--69130	23	3.5	20	81	16	80	84	13	2	0	0.73
69062--69130	33	2.1	33	83	5	86	84	13	2	0	0.74
70376--70828	28	15.7	28	80	9	437	29	28	16	25	1.97
70376--70727	113	3.1	110	82	7	427	29	28	16	25	1.97
70634--70824	62	3.2	61	81	7	214	28	27	16	27	1.97
70646--70886	32	7.8	32	74	9	146	29	26	17	26	1.98
70381--70886	56	8.6	60	78	7	297	29	28	16	25	1.97
70378--70882	28	17.2	32	78	9	147	29	28	16	25	1.97
73503--73673	51	3.4	51	82	4	184	29	13	28	28	1.94
76417--76517	40	2.5	40	79	7	107	43	10	26	18	1.83
76521--76709	42	4.4	43	77	10	190	37	13	27	21	1.91
76686--76951	61	4.4	61	83	8	316	26	20	27	25	1.99
76970--77105	55	2.5	55	90	3	204	21	21	29	27	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
76805--77207	149	2.6	149	86	7	533	26	19	29	24	1.98
78200--78258	15	3.8	15	80	12	66	5	1	10	83	0.88
78189--78260	34	2.2	32	85	9	92	4	2	9	83	0.88
88254--88284	4	7.8	4	100	0	62	77	0	0	22	0.77
90324--90490	51	3.3	51	81	1	174	31	10	28	29	1.91
90582--90655	28	2.6	28	87	10	107	25	21	31	21	1.98
90428--90703	107	2.6	105	77	6	311	31	13	26	28	1.94
90642--90809	51	3.3	51	77	1	158	31	12	26	29	1.93
93097--93150	20	2.7	20	94	0	99	40	12	18	27	1.87
93166--93195	13	2.3	13	100	0	60	40	13	16	30	1.87
96734--96785	27	2.0	25	81	7	59	42	17	17	23	1.89
97566--97608	20	2.1	20	82	4	50	51	6	11	30	1.65
99535--99569	15	2.3	15	85	0	52	54	2	11	31	1.51
105450--105492	21	2.0	22	95	4	79	41	0	27	30	1.56
106202--106226	13	1.9	13	100	0	50	36	16	16	32	1.90
106213--106266	19	2.8	19	77	8	56	37	9	20	33	1.84
108596--108623	13	2.2	13	100	0	56	39	14	14	32	1.86
108742--108780	20	1.9	21	89	5	62	23	15	17	43	1.87
109384--109448	21	3.1	21	76	10	53	26	24	0	49	1.51
109463--109514	22	2.3	23	83	9	63	28	25	0	46	1.53
109417--109563	67	2.2	67	90	3	226	29	23	2	45	1.64

Tables:   1

The End!