genome.fa.s1040.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold1040
Parameters: 2 7 7 80 10 50 1000
Length:  39901

Tables:   1   

This is table  1  of  1  ( 48 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
138--326	51	3.7	51	88	4	267	41	13	15	28	1.86
138--326	103	1.9	103	86	6	269	41	13	15	28	1.86
383--436	20	2.6	21	88	2	83	29	14	12	42	1.83
1051--1438	104	3.7	104	75	10	322	36	13	23	26	1.92
1060--1471	52	7.8	53	69	12	208	35	13	23	27	1.93
1163--1528	109	3.4	106	73	12	305	35	12	23	28	1.91
1061--1528	213	2.2	214	86	3	645	34	13	23	27	1.93
1537--1728	31	6.1	32	76	10	191	20	17	29	32	1.95
1554--1719	60	2.7	61	81	6	183	21	16	29	33	1.95
3471--3508	20	1.9	20	89	10	60	0	13	5	81	0.85
3501--3544	12	3.6	12	78	3	52	18	4	0	77	0.94
3501--3551	25	2.1	25	89	10	79	17	5	1	74	1.11
3470--3530	11	5.8	10	75	11	50	6	11	3	78	1.05
3537--3581	20	2.3	19	84	3	63	11	4	8	75	1.17
7814--7871	21	2.8	21	81	5	73	36	15	15	32	1.89
7913--7975	19	3.7	18	76	24	73	33	12	17	36	1.88
7932--7956	13	1.9	13	100	0	50	36	16	16	32	1.90
7912--7983	32	2.2	32	97	0	135	33	12	18	36	1.88
8007--8063	21	2.8	21	91	2	89	24	17	12	45	1.83
10491--10561	28	2.5	28	86	0	88	23	36	16	22	1.94
10545--10765	51	4.3	51	83	4	248	30	28	12	28	1.93
10379--10765	52	7.4	52	71	10	254	30	28	11	29	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10748--10824	28	2.8	28	86	7	95	24	35	18	22	1.96
10381--10875	262	1.9	262	93	0	846	29	28	12	29	1.93
10781--10982	79	2.6	79	85	1	253	25	30	15	28	1.96
16058--16130	20	3.7	20	96	0	128	31	20	12	35	1.90
16162--16211	19	2.5	20	90	3	75	38	14	18	30	1.89
16200--16224	13	1.9	13	100	0	50	32	16	16	36	1.90
16181--16245	33	2.0	32	87	3	94	36	15	16	30	1.90
24368--24393	13	2.0	13	100	0	52	38	15	15	30	1.88
24370--24447	33	2.4	33	93	0	129	34	23	15	26	1.94
24476--24531	19	2.9	19	89	2	76	35	16	16	32	1.90
24516--24542	13	2.1	13	100	0	54	40	7	14	37	1.74
25136--25177	22	1.9	22	95	0	75	21	35	4	38	1.75
26680--26704	13	1.9	13	100	0	50	36	16	16	32	1.90
32918--32946	13	2.2	13	100	0	58	27	13	17	41	1.87
34807--34862	17	3.1	17	71	14	58	32	3	30	33	1.75
35465--35502	20	1.9	20	94	0	67	31	10	18	39	1.85
35485--35543	13	5.0	13	76	19	67	35	13	16	33	1.88
35464--35563	33	3.0	32	94	5	157	37	12	18	33	1.87
35498--35563	20	3.7	20	73	26	83	39	12	18	30	1.87
36658--36828	51	3.3	51	79	4	198	32	11	26	29	1.92
36811--36886	27	2.8	28	88	6	102	21	21	34	23	1.97
39196--39250	1	55.0	1	94	0	83	94	0	1	3	0.36
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
39193--39246	27	2.0	27	100	0	108	88	0	3	7	0.61
39254--39307	19	2.7	21	88	8	85	31	11	20	37	1.88
39364--39423	29	2.0	32	87	9	90	33	13	16	36	1.88
39446--39509	33	1.9	33	87	0	92	23	17	17	42	1.89

Tables:   1

The End!