genome.fa.s1043.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold1043
Parameters: 2 7 7 80 10 50 1000
Length:  71140

Tables:   1   

This is table  1  of  1  ( 66 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3162--3224	19	3.6	19	72	24	75	33	12	20	33	1.90
3162--3229	32	2.1	32	97	0	127	33	11	20	33	1.89
3276--3301	13	2.0	13	100	0	52	30	15	15	38	1.88
10473--10499	9	3.0	9	100	0	54	55	22	0	22	1.44
11425--11487	19	3.7	18	72	24	64	34	17	14	33	1.90
11417--11487	32	2.2	32	94	0	124	35	18	14	32	1.90
14521--14579	13	5.1	13	75	23	60	42	15	13	28	1.85
16006--16046	2	20.5	2	100	0	82	51	0	0	48	1.00
26131--26175	15	3.1	15	78	15	58	84	0	6	8	0.78
26131--26177	16	3.1	16	73	17	55	82	0	6	10	0.82
27763--28411	42	15.5	42	71	9	308	19	27	18	34	1.95
27764--28411	84	7.7	82	77	5	406	19	27	17	35	1.94
27975--28407	126	3.4	122	75	8	345	18	27	18	35	1.95
27915--28411	168	3.0	162	81	5	528	18	27	18	35	1.94
28986--29039	11	4.7	11	78	14	56	72	1	1	24	1.05
29005--29040	14	2.6	13	91	8	54	66	0	2	30	1.06
29458--29533	28	2.8	28	89	2	109	42	14	30	13	1.84
29684--29721	20	1.9	20	88	0	58	52	10	21	15	1.72
31310--31352	18	2.4	18	84	7	61	79	4	2	13	1.00
31435--31521	5	17.2	5	76	19	76	39	3	1	56	1.24
31446--31599	2	87.0	2	69	23	87	44	3	1	51	1.26
31446--31569	40	3.2	39	83	13	132	41	3	1	54	1.26
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31447--31599	32	4.9	31	71	18	104	44	3	1	50	1.26
31547--31600	7	7.0	7	78	17	54	55	1	0	42	1.10
31786--31844	12	5.0	12	71	19	52	54	3	0	42	1.17
31786--31844	24	2.5	25	86	8	79	54	3	0	42	1.17
31786--31855	23	3.0	22	80	12	77	54	4	0	41	1.20
32937--32986	14	3.5	14	83	8	57	62	4	2	32	1.25
33927--33964	19	2.0	19	85	10	51	39	0	7	52	1.31
34102--34169	22	2.9	23	78	12	68	48	0	0	51	1.00
36075--36099	13	1.9	13	100	0	50	32	16	16	36	1.90
36108--36233	52	2.4	52	93	0	225	36	18	18	26	1.94
43948--44011	32	2.0	32	93	0	110	42	4	15	37	1.68
50228--50294	34	2.0	34	91	8	111	32	0	5	61	1.20
50229--50302	34	2.2	34	88	9	107	33	0	6	59	1.24
51390--51422	14	2.3	15	94	5	59	30	0	6	63	1.18
51570--51605	9	4.0	9	85	0	54	61	0	0	38	0.96
51572--51609	18	2.2	17	95	4	67	68	0	0	31	0.90
52228--52260	15	2.3	15	89	5	50	27	0	9	63	1.24
49949--52357	829	2.9	840	86	4	3440	39	9	10	40	1.72
53431--53838	169	2.4	167	81	6	457	32	11	7	48	1.68
54504--54549	13	3.6	14	91	8	64	78	0	21	0	0.76
55757--55787	13	2.4	13	94	0	53	35	12	16	35	1.87
55737--55803	33	2.0	33	88	11	102	32	17	13	35	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55832--55887	19	2.8	20	86	5	78	35	17	17	28	1.93
55872--55898	13	2.1	13	100	0	54	40	14	14	29	1.86
55853--55917	33	2.0	32	90	3	103	40	16	18	24	1.91
56808--56855	19	2.5	20	82	6	62	66	4	4	25	1.27
57203--57260	28	2.1	28	93	6	100	24	20	20	34	1.97
57289--57856	155	3.7	153	81	8	596	25	14	19	40	1.89
57289--57856	311	1.8	311	82	5	727	25	14	19	40	1.89
59773--59849	21	3.7	21	85	3	102	36	11	16	35	1.86
59881--59970	19	5.1	18	71	22	75	35	12	15	36	1.85
59927--59951	13	1.9	13	100	0	50	36	16	16	32	1.90
59906--59978	32	2.3	32	97	0	137	34	12	17	35	1.88
60022--60047	13	2.0	13	100	0	52	30	15	15	38	1.88
60002--60068	34	2.0	33	91	2	107	26	14	13	44	1.83
62400--62534	53	2.5	53	78	13	161	30	25	13	31	1.93
62469--62692	79	2.8	79	81	6	263	27	27	14	30	1.95
62629--62787	51	3.1	51	81	5	162	29	25	11	33	1.92
62778--63009	103	2.2	106	82	9	280	24	28	17	29	1.97
62852--62928	27	2.8	27	90	5	111	23	33	19	23	1.97
62881--63060	79	2.3	80	96	0	326	26	27	16	30	1.96
62992--63111	51	2.4	51	87	2	161	29	26	13	30	1.94
62912--63169	130	2.0	131	87	6	380	28	25	13	32	1.93
65201--65230	4	7.5	4	92	0	51	20	0	3	76	0.92

Tables:   1

The End!