Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold1046
Parameters: 2 7 7 80 10 50 1000
Length:  41583

Tables:   1   

This is table  1  of  1  ( 37 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1530--1611
28
2.9
28
80
7
96
26
17
31
24
1.97
1594--1763
51
3.3
51
79
4
196
32
11
26
29
1.91
1747--1820
26
2.8
28
84
12
93
21
20
33
24
1.97
4284--4309
13
2.0
13
100
0
52
38
15
15
30
1.88
4263--4329
33
2.0
33
88
0
98
43
16
14
25
1.86
4349--4416
19
3.9
18
76
23
83
38
14
11
35
1.83
4371--4395
13
1.9
13
100
0
50
32
16
16
36
1.90
4352--4414
32
2.0
32
96
0
117
36
15
12
34
1.86
4472--4528
21
2.7
21
97
0
105
36
19
10
33
1.86
4535--4568
17
2.0
17
100
0
68
11
5
0
82
0.83
5121--5637
55
9.3
56
91
4
741
21
20
30
28
1.98
5121--5637
113
4.7
110
90
5
751
21
20
30
28
1.98
6618--6667
1
50.0
1
79
0
55
0
4
6
90
0.57
19152--19322
51
3.3
51
79
4
198
32
11
26
29
1.92
19305--19380
27
2.8
28
88
6
102
21
21
34
23
1.97
21849--21874
13
2.0
13
100
0
52
38
15
15
30
1.88
21828--21894
33
2.0
33
88
0
98
43
16
14
25
1.86
21914--21981
19
3.9
18
76
23
83
38
14
11
35
1.83
21936--21960
13
1.9
13
100
0
50
32
16
16
36
1.90
21917--21979
32
2.0
32
96
0
117
36
15
12
34
1.86
22037--22093
21
2.7
21
97
0
105
36
19
10
33
1.86
25335--25364
15
2.0
15
93
0
51
26
3
0
70
1.03
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
25927--25980
21
2.6
22
80
11
69
38
0
0
61
0.96
26475--26513
15
2.7
15
92
4
62
25
0
2
71
0.98
26649--26706
21
2.8
21
78
2
64
37
8
0
53
1.32
32158--32328
51
3.3
51
79
4
198
32
11
26
29
1.92
32311--32386
27
2.8
28
88
6
102
21
21
34
23
1.97
34857--34882
13
2.0
13
100
0
52
38
15
15
30
1.88
34836--34902
33
2.0
33
88
0
98
43
16
14
25
1.86
34922--34989
19
3.9
18
76
23
83
38
14
11
35
1.83
34944--34968
13
1.9
13
100
0
50
32
16
16
36
1.90
34925--34987
32
2.0
32
96
0
117
36
15
12
34
1.86
35045--35101
21
2.7
21
97
0
105
36
19
10
33
1.86
35719--36286
55
10.3
55
92
3
864
20
20
29
28
1.98
37267--37320
1
54.0
1
77
0
54
0
5
5
88
0.61
37267--37320
27
2.0
27
89
3
83
0
5
5
88
0.61
37252--37320
37
1.9
35
85
11
95
0
10
4
85
0.72

Tables:   1

The End!