genome.fa.s1050.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold1050
Parameters: 2 7 7 80 10 50 1000
Length:  23443

Tables:   1   

This is table  1  of  1  ( 24 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2321--2441	53	2.3	53	92	2	201	29	19	17	33	1.94
2321--2460	51	2.7	51	86	6	185	31	18	17	32	1.94
2543--2567	13	1.9	13	100	0	50	32	16	16	36	1.90
2519--2587	33	2.1	32	86	2	93	40	14	11	33	1.82
3392--3654	27	9.2	27	77	12	210	20	18	30	31	1.96
3419--3654	112	2.1	116	87	3	336	20	17	29	31	1.96
3419--3654	86	2.8	84	85	10	318	20	17	29	31	1.96
3714--3852	29	4.8	29	78	8	131	24	19	30	25	1.98
3419--3860	27	15.4	29	74	13	301	24	17	29	28	1.97
5274--5456	1	183.0	1	75	0	87	2	3	10	83	0.88
5274--5456	14	13.3	13	71	17	113	2	3	10	83	0.88
5274--5456	17	10.2	17	73	18	115	2	3	10	83	0.88
5274--5458	31	6.0	28	78	17	163	2	3	11	82	0.91
5317--5456	30	4.5	30	84	15	178	2	3	10	83	0.85
19261--19379	51	2.3	51	94	2	204	29	18	17	34	1.94
19385--19412	13	2.2	13	100	0	56	39	17	14	28	1.89
19476--19500	13	1.9	13	100	0	50	32	16	16	36	1.90
19452--19520	33	2.1	32	86	2	93	40	14	11	33	1.82
21523--21647	48	2.5	52	90	5	195	29	20	16	34	1.94
21656--21701	12	4.1	12	74	25	55	32	13	17	36	1.88
21740--21795	13	3.9	13	79	20	67	33	17	14	33	1.90
21724--21810	31	2.8	32	92	3	149	35	18	13	32	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
22383--22731	112	3.0	111	81	10	348	25	20	27	26	1.99
22335--22761	58	7.3	59	78	11	296	26	19	26	27	1.99

Tables:   1

The End!