genome.fa.s1051.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold1051
Parameters: 2 7 7 80 10 50 1000
Length:  83277

Tables:   1   

This is table  1  of  1  ( 44 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1774--1833	28	2.2	27	82	8	77	48	5	0	46	1.24
10051--10093	19	2.3	19	80	8	52	41	0	2	55	1.12
12904--12957	27	2.0	26	89	10	83	25	12	9	51	1.70
18898--18923	2	13.0	2	100	0	52	50	0	0	50	1.00
20585--20641	12	3.7	16	72	25	59	43	0	1	54	1.10
20576--20633	30	1.9	30	89	6	91	46	1	1	50	1.22
20601--20642	18	2.3	18	91	0	66	42	0	2	54	1.13
27085--27122	14	2.6	15	83	4	51	10	5	2	81	0.94
28942--28995	13	4.1	13	83	9	65	16	1	3	77	1.00
28946--28995	22	2.2	22	86	10	66	18	2	2	78	0.95
28935--28993	27	2.1	28	87	9	86	13	3	3	79	0.98
31393--31474	39	2.1	39	95	0	146	34	6	13	46	1.68
32145--32182	19	1.9	19	89	5	58	21	5	2	71	1.19
32324--32412	30	3.0	30	98	0	169	29	21	20	29	1.98
32715--32873	79	2.0	79	100	0	318	31	11	16	40	1.84
33272--33319	24	2.0	24	100	0	96	20	12	37	29	1.90
34423--34448	12	2.2	12	100	0	52	57	0	7	34	1.27
39649--39676	13	2.2	13	100	0	56	42	0	28	28	1.56
41124--41292	92	1.8	93	88	1	259	39	21	18	20	1.92
47528--47553	13	2.0	13	100	0	52	38	15	15	30	1.88
47540--47577	20	1.9	20	100	0	76	31	15	13	39	1.86
48194--48257	27	2.3	27	77	15	69	12	6	3	78	1.06
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50669--50750	39	2.1	39	95	0	146	34	6	13	46	1.68
54874--54931	13	4.5	12	76	19	55	13	6	1	77	1.05
55456--55507	3	17.0	3	96	4	95	65	0	0	34	0.93
57432--57628	97	2.0	97	91	3	315	31	9	14	44	1.77
57830--57875	23	2.0	23	95	0	83	26	6	19	47	1.73
58154--58371	34	6.5	34	85	5	282	40	27	7	24	1.82
58152--58371	67	3.3	67	88	1	323	40	27	7	24	1.82
62437--62499	19	3.3	19	90	0	90	34	19	17	28	1.94
62804--63020	34	6.4	34	85	5	280	40	27	7	24	1.82
62802--63020	67	3.3	67	88	1	321	40	27	7	24	1.82
63470--63514	21	2.1	21	88	8	65	28	24	11	35	1.90
69010--69040	15	2.1	15	93	0	53	22	16	29	32	1.95
69883--69950	19	3.9	19	78	21	85	35	11	14	38	1.83
69885--69947	32	2.0	32	96	0	117	34	12	15	36	1.86
69904--69928	13	1.9	13	100	0	50	36	16	16	32	1.90
69990--70015	13	2.0	13	100	0	52	30	15	15	38	1.88
69970--70036	33	2.0	33	88	0	98	25	14	16	43	1.86
72546--72715	52	3.3	52	78	8	175	28	25	13	31	1.94
72729--72963	80	2.9	76	76	8	209	25	28	14	31	1.94
74231--74255	2	12.5	2	100	0	50	52	0	0	48	1.00
78160--78198	2	19.0	2	84	5	51	48	0	7	43	1.31
78696--78751	21	2.6	21	82	2	58	48	3	0	48	1.19

Tables:   1

The End!