genome.fa.s1053.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold1053
Parameters: 2 7 7 80 10 50 1000
Length:  95805

Tables:   1   

This is table  1  of  1  ( 97 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2152--2193	21	2.1	19	86	13	57	59	0	0	40	0.97
3432--3457	12	2.2	12	100	0	52	76	0	0	23	0.78
7567--7596	12	2.6	12	94	5	53	13	13	0	73	1.10
12744--12924	52	3.5	52	96	0	335	28	18	17	34	1.94
12933--12957	13	1.9	13	100	0	50	36	16	16	32	1.90
12756--12980	104	2.2	102	84	7	285	30	16	17	35	1.92
12996--13060	32	2.0	32	93	0	112	38	16	10	33	1.84
12998--13081	19	4.7	19	77	18	99	38	17	10	33	1.85
13913--14437	43	11.1	49	79	11	540	30	18	26	24	1.98
13980--14442	92	5.0	92	90	1	701	29	17	26	25	1.98
13915--14442	184	2.8	185	86	4	707	30	17	26	24	1.97
14437--14567	32	4.0	33	90	4	221	17	18	35	28	1.93
14579--14825	31	7.8	31	71	11	133	31	14	32	21	1.94
14803--14848	23	2.0	23	95	0	83	17	21	32	28	1.96
17919--18039	52	2.3	52	97	0	224	28	18	18	34	1.94
18050--18685	101	6.3	98	96	1	1002	31	16	26	24	1.97
18052--18685	251	2.5	251	94	1	1121	31	17	26	24	1.97
18685--18755	33	2.2	33	89	2	117	21	16	35	26	1.95
18756--20177	66	21.5	66	94	3	2136	29	12	37	21	1.89
18739--20180	100	14.5	100	93	4	2202	29	11	37	21	1.89
18739--20177	166	8.7	164	96	2	2406	28	12	37	21	1.89
20092--20182	27	3.2	27	77	17	103	28	14	35	21	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20186--20305	31	3.9	31	83	6	163	26	19	30	24	1.98
20157--20310	62	2.4	63	86	6	197	28	17	30	23	1.97
25298--25340	21	2.0	21	100	0	86	27	20	23	27	1.99
28562--28682	52	2.3	52	97	0	224	28	18	18	34	1.94
28693--29227	101	5.3	98	95	1	827	31	17	26	24	1.97
28695--29227	150	3.5	147	93	3	832	31	17	27	24	1.97
28693--29227	251	2.1	251	96	0	1016	31	17	26	24	1.97
29227--29297	33	2.2	33	89	2	117	21	16	35	26	1.95
29298--30186	66	13.5	65	93	4	1203	30	12	36	21	1.90
29281--30153	232	3.8	230	92	4	1334	29	12	36	21	1.89
30068--30158	27	3.2	27	77	17	103	28	14	35	21	1.93
30162--30281	31	3.9	31	83	6	163	26	19	30	24	1.98
30133--30286	62	2.4	63	86	6	197	28	17	30	23	1.97
31050--31165	33	3.5	33	78	8	137	32	16	31	18	1.94
32107--32166	1	60.0	1	76	0	57	3	3	5	88	0.70
39226--39351	52	2.4	52	97	0	243	26	19	18	35	1.94
39363--39387	13	1.9	13	100	0	50	36	16	16	32	1.90
39428--39525	19	5.8	18	70	28	81	35	17	13	33	1.88
39447--39503	13	3.9	13	76	24	60	33	17	14	35	1.90
39426--39523	32	3.0	32	95	1	169	34	17	13	34	1.88
39836--39886	17	2.9	18	77	11	61	66	1	0	31	1.03
42760--42832	34	2.1	35	82	12	89	72	4	1	21	1.09
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42745--42832	34	2.5	33	78	12	79	72	5	1	20	1.11
42745--42842	43	2.3	43	82	5	108	73	5	2	19	1.12
42785--42834	18	2.9	18	75	13	52	72	4	0	24	1.02
43057--43111	26	2.1	26	93	0	92	40	16	36	7	1.76
43064--43126	26	2.4	26	86	0	90	39	19	31	9	1.83
46185--46211	10	2.7	10	100	0	54	62	11	7	18	1.50
46373--46401	10	2.7	11	94	5	51	51	0	13	34	1.42
47567--47620	16	3.2	18	75	20	53	1	18	0	79	0.82
47548--47622	11	6.6	11	76	15	57	2	17	1	78	0.93
47550--47622	22	3.3	22	84	1	83	2	17	1	78	0.95
49017--49656	114	5.6	115	80	7	425	24	17	28	29	1.97
49045--49642	258	2.3	256	80	5	668	24	16	28	29	1.97
48981--49659	28	23.5	28	80	7	590	23	16	29	29	1.97
51708--52658	55	17.3	55	95	1	1619	28	29	20	21	1.98
53482--53549	19	3.9	19	78	21	85	35	11	14	38	1.83
53503--53527	13	1.9	13	100	0	50	36	16	16	32	1.90
53484--53546	32	2.0	32	96	0	117	34	12	15	36	1.86
53589--53614	13	2.0	13	100	0	52	30	15	15	38	1.88
53569--53635	33	2.0	33	88	0	98	25	14	16	43	1.86
56090--56158	27	2.5	27	83	6	86	24	31	18	24	1.98
56143--56313	52	3.3	50	72	11	148	29	24	12	33	1.92
55975--56313	104	3.2	103	71	15	287	30	25	12	32	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
56301--56372	28	2.6	28	86	8	94	23	34	18	23	1.96
55973--56370	212	1.9	212	89	2	620	29	26	12	31	1.93
56406--56460	28	1.9	29	88	3	85	20	27	20	32	1.97
56328--56527	79	2.5	79	82	1	222	24	29	17	30	1.97
68725--68790	19	3.8	19	77	22	90	33	12	18	36	1.88
68726--68788	32	2.0	32	100	0	126	33	12	19	34	1.89
68745--68769	13	1.9	13	100	0	50	36	16	16	32	1.90
68865--68993	52	2.5	52	94	0	231	37	18	16	27	1.92
74748--74772	2	12.5	2	100	0	50	52	0	0	48	1.00
78186--78251	19	3.8	19	77	22	90	33	12	18	36	1.88
78206--78230	13	1.9	13	100	0	50	36	16	16	32	1.90
78187--78249	32	2.0	32	100	0	126	33	12	19	34	1.89
78293--78317	13	1.9	13	100	0	50	32	16	16	36	1.90
78326--78454	52	2.5	52	93	0	222	37	17	16	28	1.92
80803--80856	22	2.5	22	96	3	101	61	9	11	18	1.55
81695--81769	20	3.8	20	80	3	80	40	12	13	34	1.81
81692--81769	40	2.0	39	87	2	111	39	12	12	34	1.82
87677--87713	2	18.5	2	100	0	74	51	0	0	48	1.00
88471--88519	3	16.3	3	100	0	98	67	0	0	32	0.91
91710--91787	32	2.4	32	100	0	156	43	12	10	33	1.77
93285--93369	36	2.4	35	75	15	84	51	0	0	48	1.00
93301--93344	12	3.6	12	82	11	54	50	0	0	50	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
93293--93354	25	2.8	21	73	21	54	46	0	0	53	1.00
93814--93869	14	3.4	16	75	17	53	62	0	1	35	1.06
93841--93868	8	3.5	8	100	0	56	60	0	0	39	0.97
93815--93903	36	2.6	34	73	16	83	59	1	1	38	1.12
94052--94093	21	1.9	23	85	9	61	38	0	21	40	1.53
94196--94244	20	2.5	20	76	3	55	61	0	0	38	0.96
94443--94489	24	2.0	24	86	0	67	63	0	0	36	0.94
94536--94597	16	3.9	16	83	8	65	48	0	0	51	1.00
94569--94606	16	2.4	16	86	0	58	57	0	0	42	0.98

Tables:   1

The End!