genome.fa.s1054.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold1054
Parameters: 2 7 7 80 10 50 1000
Length:  77301

Tables:   1   

This is table  1  of  1  ( 102 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
688--712	13	1.9	13	100	0	50	36	16	16	32	1.90
667--733	33	2.0	33	88	8	100	32	11	16	38	1.85
783--870	13	5.8	13	67	27	50	35	18	15	30	1.92
756--889	32	4.2	32	96	0	234	34	17	14	32	1.91
828--941	51	2.2	51	95	0	201	33	18	14	33	1.92
877--940	32	2.0	32	96	0	119	31	17	15	35	1.91
897--921	13	1.9	13	100	0	50	32	16	16	36	1.90
1855--2649	43	16.8	48	80	11	823	32	18	25	24	1.97
2047--2114	21	3.2	21	62	25	52	26	17	30	25	1.97
1855--2649	92	8.4	92	87	7	948	32	18	25	24	1.97
2655--2775	33	3.7	33	88	2	181	17	19	33	29	1.95
2789--3043	34	7.7	33	81	4	289	34	13	32	20	1.91
2766--3043	100	2.8	100	85	4	353	34	12	32	20	1.90
2999--3141	30	4.7	30	85	7	173	29	16	31	22	1.96
11371--11501	52	2.5	52	91	0	226	29	16	18	35	1.93
11510--11534	13	1.9	13	100	0	50	36	16	16	32	1.90
11521--11579	21	2.8	21	86	0	82	28	8	22	40	1.83
11599--11681	13	5.5	13	72	27	67	33	18	14	33	1.91
11606--11701	19	5.8	17	71	28	75	33	16	13	36	1.88
11599--11700	32	3.2	32	94	1	170	33	17	13	35	1.89
13829--13893	19	3.8	18	75	24	77	32	12	16	38	1.86
13831--13906	32	2.4	32	95	0	134	32	14	17	35	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13850--13907	13	4.0	13	74	23	53	34	15	15	34	1.89
13946--13970	13	1.9	13	100	0	50	32	16	16	36	1.90
13979--14107	52	2.5	52	94	0	231	36	18	17	27	1.93
21067--21092	9	2.9	9	100	0	52	92	7	0	0	0.39
21040--21091	17	3.0	18	83	8	63	78	13	3	3	1.02
21055--21105	13	3.8	13	79	12	50	84	11	1	1	0.79
21053--21106	20	2.5	21	82	11	65	81	12	3	1	0.91
21065--21105	11	3.6	11	86	3	55	87	12	0	0	0.53
21346--21388	20	2.1	21	86	4	61	81	11	6	0	0.87
21431--21463	10	3.3	10	88	12	50	90	9	0	0	0.44
21431--21463	14	2.5	13	90	9	57	90	9	0	0	0.44
22412--22495	30	2.8	30	89	1	125	26	27	19	27	1.99
22528--22955	34	12.9	34	77	9	318	21	30	13	35	1.91
22572--22821	135	1.9	133	84	6	335	20	30	13	35	1.91
22571--22940	101	3.7	99	84	8	398	20	31	12	35	1.90
22764--22827	32	2.2	27	72	25	67	20	34	12	32	1.90
22864--22917	27	2.0	27	100	0	108	22	37	14	25	1.93
22984--23554	49	11.7	49	77	11	541	22	25	18	32	1.97
23266--23554	52	5.7	52	84	5	392	22	25	19	33	1.97
22976--23562	101	6.1	99	88	7	791	22	25	18	32	1.97
26099--26412	156	2.0	155	90	3	493	33	14	12	40	1.82
27474--27543	16	4.5	16	72	24	53	42	0	1	55	1.08
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
27547--27601	18	3.2	17	72	27	53	40	0	0	60	0.97
27555--27600	25	1.9	25	91	8	78	41	0	0	58	0.98
34174--34285	40	2.8	40	73	2	109	18	16	12	52	1.74
34169--34297	40	3.2	40	69	4	100	18	16	10	54	1.70
34307--34345	20	1.9	21	89	5	62	23	25	12	38	1.90
36060--36128	20	3.5	20	84	5	77	50	8	1	39	1.42
36423--36447	13	1.9	13	100	0	50	60	8	0	32	1.26
36436--36477	16	2.6	16	96	0	75	50	7	0	42	1.30
36436--36486	16	3.1	16	86	8	68	47	5	0	47	1.26
39750--39787	20	1.9	20	94	0	67	42	10	15	31	1.81
40157--40363	45	4.5	46	80	7	197	34	17	25	21	1.96
40157--40333	47	3.8	47	81	6	207	35	17	26	20	1.95
40167--40365	92	2.1	94	87	5	280	34	17	26	21	1.95
40458--41253	56	13.6	56	82	7	648	21	18	29	29	1.97
40626--41235	32	20.4	32	86	5	502	21	18	29	30	1.97
40453--41252	84	9.1	90	82	7	640	21	18	29	29	1.97
40440--41253	28	27.8	27	82	9	554	22	18	29	29	1.97
41206--41671	27	17.1	27	85	2	515	30	14	31	23	1.94
41206--41670	82	5.7	80	85	4	529	30	14	31	23	1.94
41236--41670	55	8.0	54	86	2	525	30	14	31	23	1.94
43839--43912	20	3.7	20	76	3	51	36	13	10	39	1.80
43839--43916	40	2.0	39	84	2	102	35	12	11	39	1.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47673--47706	17	2.1	17	88	5	52	35	0	2	61	1.11
48400--48430	2	15.5	2	100	0	62	51	0	0	48	1.00
48840--48914	38	2.0	38	89	5	116	37	0	0	62	0.95
48885--48931	16	2.8	17	87	6	78	46	0	0	53	1.00
49067--49106	15	2.7	15	88	3	55	37	0	0	62	0.95
49135--49202	21	3.6	18	73	24	59	48	1	1	48	1.19
49145--49206	21	3.0	21	82	13	67	48	1	1	48	1.21
49084--49206	18	6.9	18	68	21	57	44	1	0	52	1.16
51272--51330	30	2.0	30	83	6	75	47	3	6	42	1.46
52330--52388	22	2.6	23	79	12	61	47	6	3	42	1.46
53253--53287	2	17.5	2	100	0	70	48	0	0	51	1.00
53744--53771	14	2.0	14	100	0	56	71	7	7	14	1.29
53982--54009	8	3.5	8	100	0	56	25	0	0	75	0.81
54240--54279	14	2.9	14	89	10	64	57	0	0	42	0.98
54359--54411	21	2.5	21	87	0	70	67	0	0	32	0.91
54536--54600	28	2.3	29	82	10	73	35	3	6	55	1.40
60660--60704	21	2.1	21	100	0	90	20	26	4	48	1.68
64239--64327	14	5.9	16	67	20	50	44	1	1	52	1.15
64685--64727	20	2.0	22	83	16	56	23	0	2	74	0.93
65882--65906	13	1.9	13	100	0	50	40	0	0	60	0.97
66614--66646	3	11.0	3	100	0	66	66	0	0	33	0.92
66727--66870	77	1.9	78	92	1	245	40	25	9	25	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
67095--67143	19	2.5	20	90	6	82	46	0	0	53	1.00
67403--67469	29	2.2	30	82	10	84	65	0	1	32	1.02
67889--67927	14	2.8	14	80	0	51	46	0	0	53	1.00
67945--67984	20	2.0	21	85	5	55	30	0	2	67	1.04
68160--68215	24	2.4	23	82	5	69	46	0	0	53	1.00
68208--68243	18	2.0	18	88	0	54	55	0	0	44	0.99
71804--71861	18	3.2	19	80	11	68	65	0	0	34	0.93
71809--71855	10	4.6	10	80	15	51	68	0	0	31	0.90
71820--71883	26	2.5	25	75	20	62	65	0	0	34	0.93
71821--71863	15	2.8	16	82	7	61	67	0	0	32	0.91
71821--71906	8	10.5	8	69	22	54	62	1	0	36	1.03
74711--74746	18	2.1	16	90	10	54	38	0	0	61	0.96
76798--76842	16	3.0	15	78	21	58	40	0	0	60	0.97
76804--76842	13	2.7	14	81	18	53	38	0	0	61	0.96

Tables:   1

The End!