Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold1056
Parameters: 2 7 7 80 10 50 1000
Length:  43567

Tables:   1   

This is table  1  of  1  ( 28 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
932--1129
75
2.6
74
80
5
200
27
17
15
39
1.90
1573--1625
20
2.7
19
80
5
70
30
13
15
41
1.85
3232--3741
165
3.1
160
80
9
532
30
11
9
48
1.72
4292--4336
21
2.1
21
83
4
54
80
0
20
0
0.72
4292--4336
11
4.2
11
82
2
56
80
0
20
0
0.72
4295--4338
13
3.3
13
78
15
54
81
0
18
0
0.68
4389--4425
12
3.2
12
92
3
58
2
18
8
70
1.25
11848--11873
13
2.0
13
100
0
52
38
15
15
30
1.88
11829--11893
33
2.0
33
87
6
96
41
16
13
27
1.87
22811--22927
52
2.3
51
93
1
198
30
17
17
34
1.93
22936--22960
13
1.9
13
100
0
50
36
16
16
32
1.90
23001--23067
33
2.0
33
91
0
107
38
13
11
35
1.82
23023--23047
13
1.9
13
100
0
50
32
16
16
36
1.90
25273--25341
28
2.5
28
83
6
86
26
18
31
23
1.97
25334--25461
51
2.4
51
78
11
132
34
9
24
32
1.87
27822--27847
13
2.0
13
100
0
52
38
15
15
30
1.88
27801--27867
33
2.0
33
88
0
98
43
16
14
25
1.86
27887--27954
19
3.9
18
73
23
74
38
13
11
36
1.81
27890--27952
32
2.0
32
93
0
108
36
14
12
36
1.84
28424--28462
20
1.9
21
89
5
62
43
7
10
38
1.67
28528--28822
59
5.1
59
90
3
456
24
29
21
25
1.99
29442--29466
13
1.9
13
100
0
50
84
0
0
16
0.63
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
29471--29569
21
4.7
21
97
0
189
31
10
21
37
1.86
29471--29589
42
2.8
42
91
2
141
32
12
19
35
1.89
29471--29589
63
1.9
63
91
3
195
32
12
19
35
1.89
29700--29725
13
2.0
13
100
0
52
30
15
15
38
1.88
29680--29746
33
2.0
33
88
0
98
25
14
16
43
1.86
32146--32222
28
2.8
28
86
7
95
23
33
19
23
1.97

Tables:   1

The End!