genome.fa.s1057.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold1057
Parameters: 2 7 7 80 10 50 1000
Length:  84757

Tables:   1   

This is table  1  of  1  ( 69 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1723--1753	15	2.1	15	93	0	53	41	16	12	29	1.85
1925--2164	110	2.2	109	84	3	313	30	10	19	38	1.86
1921--2192	55	5.0	54	79	6	253	32	9	19	38	1.84
3153--3220	33	2.1	33	88	2	102	36	16	13	33	1.87
3462--3525	31	2.0	31	82	11	76	25	10	12	51	1.72
7438--7504	28	2.4	28	87	0	89	25	19	31	23	1.98
9767--10167	55	7.3	54	90	3	574	20	20	29	28	1.98
9812--9952	28	5.1	27	62	15	65	21	19	30	27	1.98
11151--11221	1	71.0	1	72	0	52	0	7	7	85	0.73
11151--11197	14	3.4	14	91	5	69	0	4	8	87	0.67
11137--11222	22	4.0	21	73	13	77	0	10	6	82	0.84
11137--11218	9	8.9	9	77	9	60	0	10	6	82	0.82
11134--11222	12	7.0	13	71	17	62	0	11	6	82	0.85
23696--23767	28	2.6	28	84	0	81	26	19	29	25	1.99
26176--26201	13	2.0	13	100	0	52	38	15	15	30	1.88
26155--26221	33	2.0	33	88	0	98	43	16	14	25	1.86
26241--26308	19	3.9	18	76	23	83	38	14	11	35	1.83
26263--26287	13	1.9	13	100	0	50	32	16	16	36	1.90
26244--26306	32	2.0	32	96	0	117	36	15	12	34	1.86
26364--26441	21	3.7	21	98	0	147	37	19	10	33	1.85
27214--27300	28	3.1	28	62	21	65	25	21	27	25	2.00
27196--27651	55	8.3	55	93	2	715	20	20	29	29	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
27406--27491	27	3.1	27	62	15	68	23	18	30	27	1.98
28635--28704	1	70.0	1	72	0	50	0	7	7	85	0.73
28635--28705	12	5.8	12	78	6	72	0	7	8	84	0.78
28620--28704	22	3.8	21	77	10	89	0	10	5	83	0.80
28620--28701	9	8.6	9	72	17	58	0	10	6	82	0.82
31869--31900	8	4.0	8	91	0	55	15	0	21	62	1.32
32104--32141	12	3.0	13	84	7	51	34	15	13	36	1.87
34676--34700	13	1.9	13	100	0	50	32	16	16	36	1.90
34656--34723	33	2.1	33	91	2	111	35	16	14	33	1.89
36911--36936	13	2.0	13	100	0	52	30	15	15	38	1.88
38439--38478	20	2.0	20	85	5	53	10	35	42	12	1.76
45850--45901	18	2.9	18	78	10	63	26	5	3	63	1.34
46409--46434	13	2.0	13	100	0	52	38	15	15	30	1.88
48828--48893	27	2.4	27	94	0	114	19	37	24	18	1.93
60917--61034	52	2.3	52	95	0	209	30	17	16	34	1.93
60910--61054	52	2.8	51	87	4	202	30	17	17	34	1.93
61043--61067	13	1.9	13	100	0	50	36	16	16	32	1.90
62107--62395	49	6.0	49	86	6	421	30	17	26	25	1.97
62107--63224	141	7.6	143	74	15	803	31	17	26	24	1.97
62461--63219	49	15.9	49	82	7	909	31	17	25	24	1.97
62461--63224	92	8.1	92	88	5	1069	31	17	26	24	1.97
62461--63224	190	4.0	190	91	1	1171	31	17	26	24	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
63212--63388	31	5.5	32	84	9	220	16	15	36	30	1.91
63219--63388	33	5.2	34	88	7	239	17	15	36	30	1.92
63219--63388	32	5.2	33	87	4	249	17	15	36	30	1.92
63370--64236	34	25.3	35	84	9	971	32	11	34	20	1.89
63370--64269	105	8.8	104	85	7	1037	33	12	34	20	1.90
63593--63652	27	2.2	27	87	0	84	28	15	38	18	1.91
65227--65258	16	2.0	16	93	0	55	0	6	9	84	0.78
65498--65537	7	5.9	7	88	5	64	0	0	12	87	0.54
65496--65544	23	2.1	23	88	7	73	0	0	14	85	0.59
65496--65538	13	3.2	13	90	3	68	0	0	11	88	0.52
65500--65551	23	2.2	24	80	10	63	1	1	15	80	0.88
72463--72580	52	2.3	52	95	0	209	30	17	16	34	1.93
72456--72600	52	2.8	51	87	4	202	30	17	17	34	1.93
72589--72613	13	1.9	13	100	0	50	36	16	16	32	1.90
75579--75727	39	3.8	40	73	11	128	21	14	16	48	1.81
75576--76064	79	6.3	78	74	8	323	26	16	14	42	1.86
75658--76028	39	9.5	41	70	11	151	26	17	13	42	1.87
75933--76040	39	2.8	39	82	2	128	30	16	12	40	1.85
75936--76080	39	3.7	38	74	14	116	30	17	12	39	1.87
75932--76095	78	2.1	77	79	5	177	29	18	12	39	1.87
78031--78100	23	3.2	22	77	15	74	32	22	0	44	1.53
78034--78091	23	2.6	23	86	10	84	39	18	0	41	1.51
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
78066--78103	19	2.0	19	90	10	60	31	18	0	50	1.47
81534--81559	13	2.0	13	100	0	52	38	15	15	30	1.88
81516--81579	33	2.0	33	90	3	103	42	17	14	26	1.87

Tables:   1

The End!