genome.fa.s1061.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold1061
Parameters: 2 7 7 80 10 50 1000
Length:  63327

Tables:   1   

This is table  1  of  1  ( 26 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4482--4522	21	2.0	21	100	0	82	58	7	14	19	1.59
5233--5307	20	3.8	20	78	0	78	41	18	13	26	1.87
5774--5806	16	2.0	17	94	5	59	72	0	0	27	0.85
5886--5928	12	3.6	12	83	0	59	39	2	0	58	1.11
5889--5951	24	2.4	27	84	12	87	42	3	3	50	1.34
10574--10806	97	2.4	97	82	5	274	25	23	15	36	1.93
11665--11720	19	2.9	19	83	2	67	35	12	17	33	1.88
15220--15348	52	2.5	52	97	0	240	28	17	19	34	1.95
15220--15368	52	2.9	51	90	4	235	30	16	19	33	1.94
15422--15488	33	2.0	33	88	0	98	40	14	11	32	1.83
15444--15468	13	1.9	13	100	0	50	32	16	16	36	1.90
16966--17020	20	2.8	20	82	0	74	45	16	14	23	1.84
17040--17107	19	3.9	18	76	23	83	38	14	11	35	1.83
17062--17086	13	1.9	13	100	0	50	32	16	16	36	1.90
17043--17105	32	2.0	32	96	0	117	36	15	12	34	1.86
19292--19331	13	3.1	13	77	0	53	42	12	12	32	1.80
23864--23898	15	2.3	15	90	0	52	25	28	2	42	1.69
25495--25559	33	2.0	33	87	0	94	29	16	16	36	1.92
26763--27215	158	2.9	156	80	5	457	27	13	18	39	1.89
26785--27215	157	2.7	157	79	5	422	27	13	18	39	1.89
31005--31057	22	2.3	23	74	3	54	67	1	1	28	1.11
32147--32194	24	2.0	24	100	0	96	58	12	4	25	1.52
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33058--33105	25	1.9	24	83	8	60	20	14	14	50	1.78
37009--37062	20	2.7	21	85	8	76	35	18	12	33	1.89
59316--59390	20	3.8	20	78	0	87	34	13	12	40	1.81
59316--59393	40	2.0	39	87	2	111	34	12	12	39	1.82

Tables:   1

The End!