genome.fa.s1066.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold1066
Parameters: 2 7 7 80 10 50 1000
Length:  38040

Tables:   1   

This is table  1  of  1  ( 47 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1298--1355	20	2.7	23	82	12	61	60	0	1	37	1.07
1392--1450	9	7.0	9	76	18	56	55	0	10	33	1.33
1401--1474	23	3.4	23	75	17	95	56	0	9	33	1.31
1382--1476	32	3.2	30	78	11	106	56	0	8	34	1.29
1365--1494	41	3.2	41	89	8	178	56	0	9	34	1.31
1407--1510	13	8.1	13	73	13	81	57	0	10	31	1.33
1491--1540	20	2.3	22	80	20	68	54	4	6	36	1.44
1503--1542	20	2.0	20	100	0	80	55	5	5	35	1.44
1534--1566	14	2.4	14	94	0	57	60	0	3	36	1.12
5157--5183	10	2.7	10	100	0	54	18	11	0	70	1.16
5815--5846	11	2.9	11	100	0	64	56	0	0	43	0.99
5839--5907	13	5.2	13	80	13	68	57	1	8	31	1.38
5815--5886	22	3.0	22	74	23	65	55	1	5	37	1.32
5883--5911	13	2.2	13	100	0	58	62	0	6	31	1.22
5931--5960	13	2.2	14	94	5	53	66	0	10	23	1.21
9962--9997	18	2.0	18	88	0	54	0	52	2	44	1.15
9993--10036	18	2.4	18	100	0	88	13	13	0	72	1.12
9992--10039	22	2.2	22	85	14	64	12	14	0	72	1.11
10499--10536	9	4.2	9	83	10	51	55	2	0	42	1.14
10486--10535	18	2.7	18	82	14	50	58	4	2	36	1.29
10550--10602	24	2.2	23	83	10	70	39	5	3	50	1.44
10594--10620	12	2.2	12	100	0	54	44	0	14	40	1.46
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10630--10685	14	4.0	14	84	9	78	41	0	8	50	1.34
10626--10681	28	2.0	28	100	0	112	42	0	7	50	1.30
11135--11197	24	2.6	24	92	0	108	42	6	3	47	1.44
11178--11279	25	4.0	26	82	7	102	38	3	0	57	1.17
11196--11279	17	5.4	17	75	23	71	36	3	0	59	1.15
11189--11279	9	10.6	9	71	21	61	38	3	0	58	1.15
12552--12578	12	2.2	12	100	0	54	14	22	0	62	1.31
14553--14603	16	3.2	16	88	0	84	50	9	13	25	1.72
16195--16225	15	2.1	15	100	0	62	67	0	12	19	1.22
21919--21958	10	3.9	11	84	15	59	45	0	5	50	1.23
21919--21965	10	4.7	10	82	15	53	42	0	4	53	1.20
21909--21962	20	2.5	22	85	14	85	42	0	3	53	1.18
21998--22067	21	3.0	21	75	25	77	32	10	0	57	1.32
22008--22056	13	3.6	13	80	20	64	32	10	0	57	1.32
22000--22076	28	2.7	29	91	6	129	31	9	0	59	1.28
22061--22252	3	65.3	3	63	22	61	38	0	0	61	0.96
21998--22131	49	2.7	49	83	6	144	35	5	0	58	1.20
22038--22239	33	6.3	31	70	21	109	38	0	0	60	1.04
22069--22255	64	3.0	63	84	12	210	39	0	0	60	0.97
22060--22239	11	18.8	10	67	25	97	39	0	0	60	0.97
22091--22258	21	7.9	22	77	18	137	37	0	0	62	0.95
22111--22294	81	2.3	80	83	13	222	39	0	0	60	1.01
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
22247--22305	15	3.7	16	77	20	61	40	0	1	57	1.09
26531--26564	15	2.3	15	100	0	68	61	0	0	38	0.96
28589--28621	13	2.8	12	90	9	50	12	6	9	72	1.26

Tables:   1

The End!