Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold1067
Parameters: 2 7 7 80 10 50 1000
Length:  39872

Tables:   1   

This is table  1  of  1  ( 42 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1710--1764
2
27.5
2
100
0
110
49
0
0
50
1.00
2349--2455
39
2.7
39
95
0
196
43
35
1
18
1.61
2683--2741
21
2.8
21
72
7
57
37
1
0
61
1.07
2670--2740
32
2.2
32
82
2
81
36
1
2
59
1.21
2676--2754
41
1.9
41
82
10
99
36
1
2
59
1.19
2691--2770
31
2.5
31
81
6
79
38
1
1
58
1.14
4022--4127
54
2.0
53
88
7
160
22
21
15
40
1.90
5377--5425
14
3.4
14
76
13
55
0
10
8
81
0.87
5706--5762
29
1.9
30
82
10
73
63
1
1
33
1.15
7809--7842
2
17.0
2
93
0
59
52
0
47
0
1.00
8109--8148
21
2.0
20
85
9
55
45
0
5
50
1.23
8176--8240
29
2.3
29
78
7
71
41
0
3
55
1.15
9133--9218
20
4.1
21
71
18
54
58
0
1
40
1.06
9140--9192
23
2.4
22
84
6
63
52
0
1
45
1.11
9140--9235
41
2.4
39
79
8
102
54
1
1
43
1.14
9438--9470
2
16.5
2
100
0
66
51
0
0
48
1.00
9470--9498
2
14.5
2
100
0
58
51
0
48
0
1.00
9951--9988
16
2.4
16
86
4
51
55
2
0
42
1.14
10043--10074
16
2.1
15
94
5
55
21
6
0
71
1.07
10046--10086
7
5.2
8
85
8
50
19
2
2
75
1.03
11492--11530
18
2.2
18
95
0
69
51
10
17
20
1.74
14401--14461
27
2.3
26
81
16
63
34
26
9
29
1.88
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
16722--16764
22
2.0
20
86
8
59
55
0
0
44
0.99
18713--18748
18
1.9
19
88
5
56
30
8
2
58
1.42
23339--23391
16
3.3
16
74
10
54
7
15
30
47
1.73
23340--23413
32
2.3
32
85
0
94
8
13
29
48
1.71
23347--23406
16
3.7
16
71
10
50
6
13
28
51
1.66
23340--23426
32
2.7
32
83
0
84
10
12
29
47
1.75
24807--24904
16
6.1
16
81
7
92
3
19
36
40
1.67
24814--24917
16
6.5
16
77
4
84
4
19
34
41
1.72
25820--25859
18
2.2
18
86
8
55
12
2
2
82
0.87
27401--27427
13
2.1
13
100
0
54
37
14
14
33
1.88
27472--27522
20
2.6
20
90
3
77
41
13
15
29
1.86
30179--30203
13
1.9
13
100
0
50
48
16
8
28
1.74
30164--30255
33
2.8
33
88
0
130
45
16
15
22
1.84
30444--30489
19
2.4
19
96
0
83
65
17
0
17
1.28
32825--32891
33
2.0
33
88
0
98
34
11
13
40
1.81
32845--32869
13
1.9
13
100
0
50
36
16
16
32
1.90
32935--32959
13
1.9
13
100
0
50
32
16
16
36
1.90
32968--33088
52
2.3
52
97
0
224
34
18
18
28
1.94
38164--38221
19
3.0
19
84
2
80
34
13
15
36
1.87
38250--38303
20
2.7
20
85
5
74
31
11
18
38
1.86

Tables:   1

The End!