Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Scaffold107
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 2327068
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Warning! 25 characters in sequence are not A, C, G, or T
File 3 of 15
Found at i:278819 original size:20 final size:21
Alignment explanation
Indices: 278783--278839 Score: 57
Period size: 20 Copynumber: 2.8 Consensus size: 21
278773 CATCATTCTT
278783 ACAAAAAAAAAACAAAA-AAA
1 ACAAAAAAAAAACAAAACAAA
*
278803 ACAAAAAAAATTA-AAAACAAA
1 ACAAAAAAAA-AACAAAACAAA
* *
278824 A-AATAAACAAACAAAA
1 ACAAAAAAAAAACAAAA
278840 AAGGGGTCCA
Statistics
Matches: 30, Mismatches: 4, Indels: 6
0.75 0.10 0.15
Matches are distributed among these distances:
19 1 0.03
20 24 0.80
21 5 0.17
ACGTcount: A:0.84, C:0.11, G:0.00, T:0.05
Consensus pattern (21 bp):
ACAAAAAAAAAACAAAACAAA
Found at i:278841 original size:15 final size:15
Alignment explanation
Indices: 278792--278841 Score: 56
Period size: 15 Copynumber: 3.7 Consensus size: 15
278782 TACAAAAAAA
278792 AAAC-AAAAA-AAAC
1 AAACAAAAAATAAAC
*
278805 -AA-AAAAAATTAA-
1 AAACAAAAAATAAAC
278817 AAACAAAAAATAAAC
1 AAACAAAAAATAAAC
278832 AAACAAAAAA
1 AAACAAAAAA
278842 GGGGTCCAGA
Statistics
Matches: 30, Mismatches: 2, Indels: 8
0.75 0.05 0.20
Matches are distributed among these distances:
12 7 0.23
13 4 0.13
14 9 0.30
15 10 0.33
ACGTcount: A:0.84, C:0.10, G:0.00, T:0.06
Consensus pattern (15 bp):
AAACAAAAAATAAAC
Found at i:280123 original size:28 final size:28
Alignment explanation
Indices: 280091--280444 Score: 440
Period size: 28 Copynumber: 12.5 Consensus size: 28
280081 CGTTTATCTC
* **
280091 TTCAAAGTCCACTGGTCAGTGGCATCCT
1 TTCAAAGCCCACAAGTCAGTGGCATCCT
* * *
280119 TTCAAAGCTCACAAATCAGTGGCATCTT
1 TTCAAAGCCCACAAGTCAGTGGCATCCT
280147 TTCAAAGCCCACAAGTCAGTGGCATCCT
1 TTCAAAGCCCACAAGTCAGTGGCATCCT
* *
280175 TTCAAAGCCCACAAGTTAGTGGCACCCT
1 TTCAAAGCCCACAAGTCAGTGGCATCCT
*
280203 TTCAAAGCCCACAAGTTAGTGGCATCCT
1 TTCAAAGCCCACAAGTCAGTGGCATCCT
* * *
280231 TTCGAAGCCCACAAGTCAGTGGAAT-TT
1 TTCAAAGCCCACAAGTCAGTGGCATCCT
* * *
280258 CTTCAAAAGACCACAAGTTAGCGGCATCCT
1 -TTC-AAAGCCCACAAGTCAGTGGCATCCT
* *
280288 TTTAAAGCCCACAAGTCAGTGGCACCCT
1 TTCAAAGCCCACAAGTCAGTGGCATCCT
*
280316 TTCAAAGCGCACAAGTCAGTGGCATACCTT
1 TTCAAAGCCCACAAGTCAGTGGCAT-CC-T
* * *
280346 TTCAAAGCCCACAAGTTAGTGGTACCCT
1 TTCAAAGCCCACAAGTCAGTGGCATCCT
280374 TTCAAAGCCCACAAGTCAGTGGCATACCCT
1 TTCAAAGCCCACAAGTCAGTGGCAT--CCT
* *
280404 TTCAAAGCCCACAAGTCGGTGGCACCCT
1 TTCAAAGCCCACAAGTCAGTGGCATCCT
280432 TTCAAAGCCCACA
1 TTCAAAGCCCACA
280445 CAAGTTGGTG
Statistics
Matches: 280, Mismatches: 39, Indels: 14
0.84 0.12 0.04
Matches are distributed among these distances:
27 1 0.00
28 207 0.74
29 23 0.08
30 49 0.17
ACGTcount: A:0.29, C:0.30, G:0.18, T:0.23
Consensus pattern (28 bp):
TTCAAAGCCCACAAGTCAGTGGCATCCT
Found at i:281397 original size:20 final size:20
Alignment explanation
Indices: 281372--281431 Score: 66
Period size: 20 Copynumber: 3.0 Consensus size: 20
281362 TTTTACCCAG
*
281372 ATGTATAGATACATTTTTCA
1 ATGTATAGATACATTTATCA
* * *
281392 ATGTATCGATACATGTATGA
1 ATGTATAGATACATTTATCA
*
281412 ATGTATTGATACATTCTATC
1 ATGTATAGATACATT-TATC
281432 TTTTATACTC
Statistics
Matches: 32, Mismatches: 7, Indels: 1
0.80 0.17 0.03
Matches are distributed among these distances:
20 29 0.91
21 3 0.09
ACGTcount: A:0.33, C:0.12, G:0.13, T:0.42
Consensus pattern (20 bp):
ATGTATAGATACATTTATCA
Found at i:281486 original size:72 final size:71
Alignment explanation
Indices: 281361--281571 Score: 350
Period size: 72 Copynumber: 3.0 Consensus size: 71
281351 AAAAGTCACA
*
281361 TTTTTACCCAGATGTATAGATACATTTTTCAATGTATCGATACATGTATGAATGTATTGATACAT
1 TTTTTACCCAGATGTATCGATACATTTTTCAATGTATCGATACATGTATGAATGTATTGATACAT
281426 TCTATC
66 TCTATC
* * *
281432 TTTTATACTCAGATGTATCGATACTTTTTTCAATGTATCCATACATGTATGAATGTATTGATACA
1 TTTT-TACCCAGATGTATCGATACATTTTTCAATGTATCGATACATGTATGAATGTATTGATACA
*
281497 TTCTGTC
65 TTCTATC
* *
281504 TTTTTACCCCGATGTATCGATACATTTTTCAATGTATTGATACATGTATGAATGTATTGATACAT
1 TTTTTACCCAGATGTATCGATACATTTTTCAATGTATCGATACATGTATGAATGTATTGATACAT
281569 TCT
66 TCT
281572 TCAATGTATC
Statistics
Matches: 129, Mismatches: 10, Indels: 2
0.91 0.07 0.01
Matches are distributed among these distances:
71 63 0.49
72 66 0.51
ACGTcount: A:0.29, C:0.15, G:0.13, T:0.44
Consensus pattern (71 bp):
TTTTTACCCAGATGTATCGATACATTTTTCAATGTATCGATACATGTATGAATGTATTGATACAT
TCTATC
Found at i:281540 original size:20 final size:20
Alignment explanation
Indices: 281515--281591 Score: 100
Period size: 20 Copynumber: 3.9 Consensus size: 20
281505 TTTTACCCCG
281515 ATGTATCGATACATTTTTCA
1 ATGTATCGATACATTTTTCA
* * * *
281535 ATGTATTGATACATGTATGA
1 ATGTATCGATACATTTTTCA
* *
281555 ATGTATTGATACATTCTTCA
1 ATGTATCGATACATTTTTCA
281575 ATGTATCGATACATTTT
1 ATGTATCGATACATTTT
281592 GTCTTTTTAT
Statistics
Matches: 47, Mismatches: 10, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
20 47 1.00
ACGTcount: A:0.31, C:0.12, G:0.13, T:0.44
Consensus pattern (20 bp):
ATGTATCGATACATTTTTCA
Found at i:281567 original size:91 final size:91
Alignment explanation
Indices: 281463--281639 Score: 232
Period size: 91 Copynumber: 1.9 Consensus size: 91
281453 TACTTTTTTC
* * * *
281463 AATGTATCCATACATGT-ATGAATGTATTGATACATTCTGTCTTTTTACCCCGATGTATCGATAC
1 AATGTATCCATACAT-TCATCAATGTATCGATACATTCTGTCTTTTTACCCAGATGTATCAATAC
*
281527 ATT-TTTCAATGTATTGATACATGTATG
65 ATTATTT-AATGTATTGACACATGTATG
** * * *
281554 AATGTATTGATACATTCTTCAATGTATCGATACATTTTGTCTTTTTATCCAGATGTATCAATACA
1 AATGTATCCATACATTCATCAATGTATCGATACATTCTGTCTTTTTACCCAGATGTATCAATACA
281619 TTATTTAATGTATTGACACAT
66 TTATTTAATGTATTGACACAT
281640 CTAGTTAAAA
Statistics
Matches: 74, Mismatches: 10, Indels: 4
0.84 0.11 0.05
Matches are distributed among these distances:
90 1 0.01
91 70 0.95
92 3 0.04
ACGTcount: A:0.30, C:0.15, G:0.12, T:0.43
Consensus pattern (91 bp):
AATGTATCCATACATTCATCAATGTATCGATACATTCTGTCTTTTTACCCAGATGTATCAATACA
TTATTTAATGTATTGACACATGTATG
Found at i:285640 original size:51 final size:51
Alignment explanation
Indices: 285562--285708 Score: 249
Period size: 51 Copynumber: 2.9 Consensus size: 51
285552 AAAGGTCACA
* * *
285562 TTTTTACCTAGATGTATCGATATATTTTTCAATTTATCGATACATTTTATC
1 TTTTTACCTAGATGTATCGATACATTTTTCAATGTATCGATACATTCTATC
285613 TTTTTACCTAGATGTATCGATACATTTTTCAATGTATCGATACATTCTATC
1 TTTTTACCTAGATGTATCGATACATTTTTCAATGTATCGATACATTCTATC
* *
285664 TTTTTACCCAGATGTATCGATACATTTTGCAATGTATCGATACAT
1 TTTTTACCTAGATGTATCGATACATTTTTCAATGTATCGATACAT
285709 CTAATTAAAA
Statistics
Matches: 91, Mismatches: 5, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
51 91 1.00
ACGTcount: A:0.28, C:0.16, G:0.10, T:0.46
Consensus pattern (51 bp):
TTTTTACCTAGATGTATCGATACATTTTTCAATGTATCGATACATTCTATC
Found at i:287180 original size:20 final size:20
Alignment explanation
Indices: 287155--287208 Score: 83
Period size: 20 Copynumber: 2.7 Consensus size: 20
287145 GTTACAAGCA
*
287155 ATGTATCGATACAAT-TCATC
1 ATGTATCGATACAATGT-ACC
287175 ATGTATCGATACAATGTACC
1 ATGTATCGATACAATGTACC
287195 ATGTATCGATACAA
1 ATGTATCGATACAA
287209 AGAGTGGTAG
Statistics
Matches: 32, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
20 31 0.97
21 1 0.03
ACGTcount: A:0.37, C:0.19, G:0.13, T:0.31
Consensus pattern (20 bp):
ATGTATCGATACAATGTACC
Found at i:287282 original size:19 final size:19
Alignment explanation
Indices: 287236--287297 Score: 90
Period size: 19 Copynumber: 3.2 Consensus size: 19
287226 GCTGCCAGTT
287236 TCATGTATCGATACAATTG-
1 TCATGTATCGATACAA-TGA
287255 TCTATGTATCGATACAATGA
1 TC-ATGTATCGATACAATGA
287275 TCATGTATCGATACAATGTA
1 TCATGTATCGATACAATG-A
287295 TCA
1 TCA
287298 ATACAAAGCA
Statistics
Matches: 40, Mismatches: 0, Indels: 5
0.89 0.00 0.11
Matches are distributed among these distances:
19 20 0.50
20 20 0.50
ACGTcount: A:0.34, C:0.16, G:0.15, T:0.35
Consensus pattern (19 bp):
TCATGTATCGATACAATGA
Found at i:287319 original size:33 final size:32
Alignment explanation
Indices: 287258--287321 Score: 92
Period size: 32 Copynumber: 2.0 Consensus size: 32
287248 ACAATTGTCT
* * *
287258 ATGTATCGATACAATGATCATGTATCGATACA
1 ATGTATCAATACAAAGATAATGTATCGATACA
287290 ATGTATCAATACAAAGCATAATGTATCGATAC
1 ATGTATCAATACAAAG-ATAATGTATCGATAC
287322 TTCTGGGTGT
Statistics
Matches: 28, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
32 14 0.50
33 14 0.50
ACGTcount: A:0.41, C:0.16, G:0.14, T:0.30
Consensus pattern (32 bp):
ATGTATCAATACAAAGATAATGTATCGATACA
Found at i:296029 original size:13 final size:13
Alignment explanation
Indices: 295989--296041 Score: 55
Period size: 13 Copynumber: 4.5 Consensus size: 13
295979 TTGTTACAAG
295989 CAATGTATCGATA
1 CAATGTATCGATA
296002 CAA--T-TC-AT-
1 CAATGTATCGATA
296010 C-ATGTATCGATA
1 CAATGTATCGATA
*
296022 CAATGTATCCATA
1 CAATGTATCGATA
296035 CAATGTA
1 CAATGTA
296042 CCATGTATCG
Statistics
Matches: 33, Mismatches: 1, Indels: 12
0.72 0.02 0.26
Matches are distributed among these distances:
7 1 0.03
8 1 0.03
9 3 0.09
10 4 0.12
11 3 0.09
12 1 0.03
13 20 0.61
ACGTcount: A:0.38, C:0.19, G:0.11, T:0.32
Consensus pattern (13 bp):
CAATGTATCGATA
Found at i:296029 original size:33 final size:33
Alignment explanation
Indices: 295989--296057 Score: 104
Period size: 33 Copynumber: 2.1 Consensus size: 33
295979 TTGTTACAAG
* *
295989 CAATGTATCGATACAAT-TCATCATGTATCGATA
1 CAATGTATCCATACAATGT-ACCATGTATCGATA
296022 CAATGTATCCATACAATGTACCATGTATCGATA
1 CAATGTATCCATACAATGTACCATGTATCGATA
296055 CAA
1 CAA
296058 ATAGTGGTAG
Statistics
Matches: 33, Mismatches: 2, Indels: 2
0.89 0.05 0.05
Matches are distributed among these distances:
33 32 0.97
34 1 0.03
ACGTcount: A:0.38, C:0.20, G:0.12, T:0.30
Consensus pattern (33 bp):
CAATGTATCCATACAATGTACCATGTATCGATA
Found at i:296124 original size:13 final size:13
Alignment explanation
Indices: 296106--296137 Score: 55
Period size: 13 Copynumber: 2.5 Consensus size: 13
296096 ACAATTGTCC
296106 ATGTATCGATACA
1 ATGTATCGATACA
296119 ATGTATCGATACA
1 ATGTATCGATACA
*
296132 AAGTAT
1 ATGTAT
296138 AATGTATCGA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
13 18 1.00
ACGTcount: A:0.41, C:0.12, G:0.16, T:0.31
Consensus pattern (13 bp):
ATGTATCGATACA
Found at i:296659 original size:19 final size:20
Alignment explanation
Indices: 296619--296656 Score: 67
Period size: 20 Copynumber: 1.9 Consensus size: 20
296609 AGCCTTTGAT
*
296619 CATGCATTTTTACTATGTTC
1 CATGCATTTTTAATATGTTC
296639 CATGCATTTTTAATATGT
1 CATGCATTTTTAATATGT
296657 CCAGCATCTC
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.24, C:0.16, G:0.11, T:0.50
Consensus pattern (20 bp):
CATGCATTTTTAATATGTTC
Found at i:301096 original size:28 final size:29
Alignment explanation
Indices: 301052--301625 Score: 424
Period size: 28 Copynumber: 19.5 Consensus size: 29
301042 AATACGACTT
* *
301052 TTTTCAAATCCCACAAGTCAGTGACACCC
1 TTTTCAAAGCCCACAAGTCAGTGGCACCC
* * *
301081 TTTT-AAAGCCCACAAGTAAGTAGCA-TC
1 TTTTCAAAGCCCACAAGTCAGTGGCACCC
* * * * *
301108 TTTTCAATGCCCATAAGTTAGTAGCA-TC
1 TTTTCAAAGCCCACAAGTCAGTGGCACCC
* *
301136 TTTTCAAAGCCCACAAGTTAGTGGCAACTC
1 TTTTCAAAGCCCACAAGTCAGTGGC-ACCC
* * * *
301166 TTTTCAAAGCCCACAAATTAGTGACA-TC
1 TTTTCAAAGCCCACAAGTCAGTGGCACCC
*
301194 TTTTCAAAGCCCACAAGTCGGTGGCAACCC
1 TTTTCAAAGCCCACAAGTCAGTGGC-ACCC
*
301224 TTTTCAAAGGCCACAAGTCAGTGGCACCC
1 TTTTCAAAGCCCACAAGTCAGTGGCACCC
* *
301253 TTTT-AAAGCCTACAAGTCAGGGGCACCC
1 TTTTCAAAGCCCACAAGTCAGTGGCACCC
* *
301281 -TTTCAAAAGCCCATAAATCAGTGGCACCC
1 TTTTC-AAAGCCCACAAGTCAGTGGCACCC
* *
301310 TTTT-AAAGCCCACATGTTAGTGGCATCCTTTCAATCC
1 TTTTCAAAGCCCACAAGTCAGTGGCA------C---CC
* *
301347 TTTTGAAAGCCCACAAATCAGTGGCACCC
1 TTTTCAAAGCCCACAAGTCAGTGGCACCC
* * *
301376 -TTTCAAAAGCCCACAAATCAGTGACATCC
1 TTTTC-AAAGCCCACAAGTCAGTGGCACCC
* * * *
301405 -TTTCAAAGCCTACAAGTTAGTGGTATCC
1 TTTTCAAAGCCCACAAGTCAGTGGCACCC
*
301433 -TTTCAAAAGCCTACAAGTCCA-TGGCACCC
1 TTTTC-AAAGCCCACAAGT-CAGTGGCACCC
301462 TTTT-AAAGCCCACAAGTCAGTGGCACCC
1 TTTTCAAAGCCCACAAGTCAGTGGCACCC
* **
301490 -TTTCAAAGCCCATAAGTTGGTGGCATCCTTTC
1 TTTTCAAAGCCCACAAGTCAGTGGCA-CC---C
* * *
301522 AATTATTTCAAAAGCCTACAAGTCAATGGCATCC
1 ---T-TTTC-AAAGCCCACAAGTCAGTGGCACCC
301556 TTTT-AAAGCCCACAAGTCAGTGGCACCC
1 TTTTCAAAGCCCACAAGTCAGTGGCACCC
* * * *
301584 -TTTCAAAGCACACAAGTCAATGGTATCC
1 TTTTCAAAGCCCACAAGTCAGTGGCACCC
301612 -TTTCAAAGCCCACA
1 TTTTCAAAGCCCACA
301626 TAAGTTGATG
Statistics
Matches: 447, Mismatches: 63, Indels: 71
0.77 0.11 0.12
Matches are distributed among these distances:
27 16 0.04
28 238 0.53
29 84 0.19
30 59 0.13
31 1 0.00
32 2 0.00
34 2 0.00
37 11 0.02
38 34 0.08
ACGTcount: A:0.31, C:0.28, G:0.15, T:0.25
Consensus pattern (29 bp):
TTTTCAAAGCCCACAAGTCAGTGGCACCC
Found at i:301194 original size:86 final size:85
Alignment explanation
Indices: 301052--301625 Score: 331
Period size: 86 Copynumber: 6.5 Consensus size: 85
301042 AATACGACTT
* * *
301052 TTTTCAAATCCCACAAGTCAGTGACACCCTTTTAAAGCCCACAAGTAAGT-AGCATCTTTTCAAT
1 TTTTCAAAGCCCACAAGTCAGTGGCACCCTTTTAAAGCCCACAAGTAAGTGA-CATCTTTTCAAA
* * *
301116 GCCCATAAGTTAGTAGCA-TC
65 GCCCATAAGTCAGTGGCACCC
* * * *
301136 TTTTCAAAGCCCACAAGTTAGTGGCAACTCTTTTCAAAGCCCACAAATTAGTGACATCTTTTCAA
1 TTTTCAAAGCCCACAAGTCAGTGGC-ACCCTTTT-AAAGCCCACAAGTAAGTGACATCTTTTCAA
* *
301201 AGCCCACAAGTCGGTGGCAACCC
64 AGCCCATAAGTCAGTGGC-ACCC
* * * * * * *
301224 TTTTCAAAGGCCACAAGTCAGTGGCACCCTTTTAAAGCCTACAAGTCAGGGGCACCCTTTCAAAA
1 TTTTCAAAGCCCACAAGTCAGTGGCACCCTTTTAAAGCCCACAAGTAAGTGACATCTTTTC-AAA
*
301289 GCCCATAAATCAGTGGCACCC
65 GCCCATAAGTCAGTGGCACCC
* * * * * *
301310 TTTT-AAAGCCCACATGTTAGTGGCATCCTTTCAATCCTTTTGAAAGCCCACAAATCAGTGGCAC
1 TTTTCAAAGCCCACAAGTCAGTGGCA------C---CCTTTT-AAAGCCCACAAGTAAGTGACAT
* * * * *
301374 CCTTTCAAAAGCCCACAAATCAGTGACATCC
56 CTTTTC-AAAGCCCATAAGTCAGTGGCACCC
* * * * * * * * *
301405 -TTTCAAAGCCTACAAGTTAGTGGTATCCTTTCAAAAGCCTACAAGTCCA-TGGCACCCTTTT-A
1 TTTTCAAAGCCCACAAGTCAGTGGCACCCTTT-TAAAGCCCACAAGT-AAGTGACA-TCTTTTCA
*
301467 AAGCCCACAAGTCAGTGGCACCC
63 AAGCCCATAAGTCAGTGGCACCC
* ** * *
301490 -TTTCAAAGCCCATAAGTTGGTGGCATCCTTTCAATTATTTCAAAAGCCTACAAGTCAA-TGGCA
1 TTTTCAAAGCCCACAAGTCAGTGGCA-CC---C---T-TTT--AAAGCCCACAAGT-AAGTGACA
*
301553 TCCTTTT-AAAGCCCACAAGTCAGTGGCACCC
55 T-CTTTTCAAAGCCCATAAGTCAGTGGCACCC
* * * * *
301584 -TTTCAAAGCACACAAGTCAATGGTATCCTTTCAAAGCCCACA
1 TTTTCAAAGCCCACAAGTCAGTGGCACCCTTTTAAAGCCCACA
301626 TAAGTTGATG
Statistics
Matches: 397, Mismatches: 62, Indels: 62
0.76 0.12 0.12
Matches are distributed among these distances:
84 31 0.08
85 67 0.17
86 92 0.23
87 34 0.09
88 24 0.06
89 1 0.00
90 1 0.00
91 1 0.00
92 1 0.00
93 3 0.01
94 77 0.19
95 65 0.16
ACGTcount: A:0.31, C:0.28, G:0.15, T:0.25
Consensus pattern (85 bp):
TTTTCAAAGCCCACAAGTCAGTGGCACCCTTTTAAAGCCCACAAGTAAGTGACATCTTTTCAAAG
CCCATAAGTCAGTGGCACCC
Found at i:301303 original size:57 final size:56
Alignment explanation
Indices: 301053--301625 Score: 405
Period size: 57 Copynumber: 9.8 Consensus size: 56
301043 ATACGACTTT
* * * * * *
301053 TTTCAAATCCCACAAGTCAGTGACACCCTTTTAAAGCCCACAAGTAAGTAGCATCT
1 TTTCAAAGCCCACAAGTCAGTGGCACCCTTTTAAAGCCCACAAGTCAGTGGCACCC
* * * * * * *
301109 TTTCAATGCCCATAAGTTAGTAGCA-TCTTTTCAAAGCCCACAAGTTAGTGGCAACTCT
1 TTTCAAAGCCCACAAGTCAGTGGCACCCTTTT-AAAGCCCACAAGTCAGTGGC-AC-CC
* * * * *
301167 TTTCAAAGCCCACAAATTAGTGACA-TCTTTTCAAAGCCCACAAGTCGGTGGCAACCC
1 TTTCAAAGCCCACAAGTCAGTGGCACCCTTTT-AAAGCCCACAAGTCAGTGGC-ACCC
* * *
301224 TTTTCAAAGGCCACAAGTCAGTGGCACCCTTTTAAAGCCTACAAGTCAGGGGCACCC
1 -TTTCAAAGCCCACAAGTCAGTGGCACCCTTTTAAAGCCCACAAGTCAGTGGCACCC
* * * *
301281 TTTCAAAAGCCCATAAATCAGTGGCACCCTTTTAAAGCCCACATGTTAGTGGCATCCTTTCAATC
1 TTTC-AAAGCCCACAAGTCAGTGGCACCCTTTTAAAGCCCACAAGTCAGTGGCA------C---C
301346 C
56 C
* * * * * *
301347 TTTTGAAAGCCCACAAATCAGTGGCACCCTTTCAAAAGCCCACAAATCAGTGACATCC
1 -TTTCAAAGCCCACAAGTCAGTGGCACCCTTT-TAAAGCCCACAAGTCAGTGGCACCC
* * * * * *
301405 TTTCAAAGCCTACAAGTTAGTGGTATCCTTTCAAAAGCCTACAAGTCCA-TGGCACCC
1 TTTCAAAGCCCACAAGTCAGTGGCACCCTTT-TAAAGCCCACAAGT-CAGTGGCACCC
* * * **
301462 TTTTAAAGCCCACAAGTCAGTGGCACCCTTTCAAAGCCCATAAGTTGGTGGCATCCTTTC
1 TTTCAAAGCCCACAAGTCAGTGGCACCCTTTTAAAGCCCACAAGTCAGTGGCA-CC---C
* * *
301522 AATTATTTCAAAAGCCTACAAGTCAATGGCATCCTTTTAAAGCCCACAAGTCAGTGGCACCC
1 -----TTTC-AAAGCCCACAAGTCAGTGGCACCCTTTTAAAGCCCACAAGTCAGTGGCACCC
* * * * *
301584 TTTCAAAGCACACAAGTCAATGGTATCCTTTCAAAGCCCACA
1 TTTCAAAGCCCACAAGTCAGTGGCACCCTTTTAAAGCCCACA
301626 TAAGTTGATG
Statistics
Matches: 415, Mismatches: 73, Indels: 58
0.76 0.13 0.11
Matches are distributed among these distances:
55 5 0.01
56 91 0.22
57 124 0.30
58 92 0.22
59 5 0.01
60 1 0.00
62 1 0.00
63 1 0.00
65 5 0.01
66 70 0.17
67 20 0.05
ACGTcount: A:0.31, C:0.28, G:0.15, T:0.25
Consensus pattern (56 bp):
TTTCAAAGCCCACAAGTCAGTGGCACCCTTTTAAAGCCCACAAGTCAGTGGCACCC
Found at i:301358 original size:38 final size:37
Alignment explanation
Indices: 301308--301381 Score: 103
Period size: 38 Copynumber: 2.0 Consensus size: 37
301298 TCAGTGGCAC
** * *
301308 CCTTTTAAAGCCCACATGTTAGTGGCATCCTTTCAAT
1 CCTTTTAAAGCCCACAAATCAGTGGCACCCTTTCAAT
301345 CCTTTTGAAAGCCCACAAATCAGTGGCACCCTTTCAA
1 CCTTTT-AAAGCCCACAAATCAGTGGCACCCTTTCAA
301382 AAGCCCACAA
Statistics
Matches: 32, Mismatches: 4, Indels: 1
0.86 0.11 0.03
Matches are distributed among these distances:
37 6 0.19
38 26 0.81
ACGTcount: A:0.27, C:0.30, G:0.14, T:0.30
Consensus pattern (37 bp):
CCTTTTAAAGCCCACAAATCAGTGGCACCCTTTCAAT
Found at i:301413 original size:152 final size:153
Alignment explanation
Indices: 301193--301495 Score: 405
Period size: 152 Copynumber: 2.0 Consensus size: 153
301183 TTAGTGACAT
* * * * * *
301193 CTTTTCAAAGCCCACAAGTCGGTGGCAACCCTTTTCAAAGGCCACAAGTCAGTGGCACCCTTTTA
1 CTTTTCAAAGCCCACAAATCAGTGGCAACCCTTTTCAAAGCCCACAAATCAGTGACACCCTTTCA
*
301258 AAGCCTACAAGTCAGGGGCACCCTTTCAAAAGCCCATAAAT-CAGTGGCACCCTTTTAAAGCCCA
66 AAGCCTACAAGTCAGGGGCACCCTTTCAAAAGCCCACAAATCCA-TGGCACCCTTTTAAAGCCCA
* * *
301322 CATGTTAGTGGCATCCTTTCAATC
130 CAAGTCAGTGGCACCCTTTCAATC
* *
301346 CTTTTGAAAGCCCACAAATCAGTGGC-ACCC-TTTCAAAAGCCCACAAATCAGTGACATCCTTTC
1 CTTTTCAAAGCCCACAAATCAGTGGCAACCCTTTTC-AAAGCCCACAAATCAGTGACACCCTTTC
* * * * * *
301409 AAAGCCTACAAGTTAGTGGTATCCTTTCAAAAGCCTACAAGTCCATGGCACCCTTTTAAAGCCCA
65 AAAGCCTACAAGTCAGGGGCACCCTTTCAAAAGCCCACAAATCCATGGCACCCTTTTAAAGCCCA
301474 CAAGTCAGTGGCACCCTTTCAA
130 CAAGTCAGTGGCACCCTTTCAA
301496 AGCCCATAAG
Statistics
Matches: 130, Mismatches: 18, Indels: 5
0.85 0.12 0.03
Matches are distributed among these distances:
151 4 0.03
152 101 0.78
153 25 0.19
ACGTcount: A:0.30, C:0.30, G:0.16, T:0.24
Consensus pattern (153 bp):
CTTTTCAAAGCCCACAAATCAGTGGCAACCCTTTTCAAAGCCCACAAATCAGTGACACCCTTTCA
AAGCCTACAAGTCAGGGGCACCCTTTCAAAAGCCCACAAATCCATGGCACCCTTTTAAAGCCCAC
AAGTCAGTGGCACCCTTTCAATC
Found at i:301515 original size:180 final size:179
Alignment explanation
Indices: 301165--301618 Score: 554
Period size: 180 Copynumber: 2.5 Consensus size: 179
301155 AGTGGCAACT
* * * * *
301165 CTTTTCAAAGCCCACAAATTAGTGACATCTTTTCAAAGCCCACAAGTCGGTGGCAACCCTTTTCA
1 CTTTTAAAAGCCCACAAATCAGTGGCATCCTTTCAAAGCCCACAAGTCAGTGGC-ACCC-TTTCA
* * *
301230 AAGGCCACAAGTCAGTGGCACCCTTT-TAAAGCCTACAAGTCAGGGGCACCCTTTCAAAAGCCCA
64 AA-GCCACAAGTCAGTGGTATCCTTTCAAAAGCCTACAAGTCAGGGGCACCCTTTCAAAAGCCCA
* * *
301294 TAAATCAGTGGCACCCTTTTAAAGCCCACATGTTAGTGGCATCCTTTCAATC
128 CAAATCAGTGGCACCCTTTCAAAGCCCACAAGTTAGTGGCATCCTTTCAATC
* * * * *
301346 CTTTTGAAAGCCCACAAATCAGTGGCACCCTTTCAAAAGCCCACAAATCAGTGACATCCTTTCAA
1 CTTTTAAAAGCCCACAAATCAGTGGCATCCTTTC-AAAGCCCACAAGTCAGTGGCACCCTTTCAA
* * *
301411 AGCCTACAAGTTAGTGGTATCCTTTCAAAAGCCTACAAGTCCA-TGGCACCCTTT-TAAAGCCCA
65 AGCC-ACAAGTCAGTGGTATCCTTTCAAAAGCCTACAAGT-CAGGGGCACCCTTTCAAAAGCCCA
* * * *
301474 CAAGTCAGTGGCACCCTTTCAAAGCCCATAAGTTGGTGGCATCCTTTCAATT
128 CAAATCAGTGGCACCCTTTCAAAGCCCACAAGTTAGTGGCATCCTTTCAATC
* * * * * *
301526 ATTTCAAAAGCCTACAAGTCAATGGCATCCTTTTAAAGCCCACAAGTCAGTGGCACCCTTTCAAA
1 CTTTTAAAAGCCCACAAATCAGTGGCATCCTTTCAAAGCCCACAAGTCAGTGGCACCCTTTCAAA
*
301591 GCACACAAGTCAATGGTATCCTTTCAAA
66 GC-CACAAGTCAGTGGTATCCTTTCAAA
301619 GCCCACATAA
Statistics
Matches: 233, Mismatches: 35, Indels: 12
0.83 0.12 0.04
Matches are distributed among these distances:
179 55 0.24
180 104 0.45
181 55 0.24
182 19 0.08
ACGTcount: A:0.31, C:0.29, G:0.16, T:0.25
Consensus pattern (179 bp):
CTTTTAAAAGCCCACAAATCAGTGGCATCCTTTCAAAGCCCACAAGTCAGTGGCACCCTTTCAAA
GCCACAAGTCAGTGGTATCCTTTCAAAAGCCTACAAGTCAGGGGCACCCTTTCAAAAGCCCACAA
ATCAGTGGCACCCTTTCAAAGCCCACAAGTTAGTGGCATCCTTTCAATC
Found at i:301573 original size:122 final size:124
Alignment explanation
Indices: 301405--301632 Score: 320
Period size: 122 Copynumber: 1.9 Consensus size: 124
301395 AGTGACATCC
* * * * *
301405 TTTCAAAGCCTACAAGTTAGTGGTATCCTTTCAAAAGCCTACAAGTCCA-TGGCACCCTTTTAAA
1 TTTCAAAGCCTACAAGTCAATGGCATCCTTTCAAAAGCCCACAAGT-CAGTGGCACCCTTTCAAA
* *
301469 GCCCACAAGTCAGTGGCACCCTTTCAAAG-CC-CATAAGTTGGTGGCATCCTTTCAATTA
65 GCACACAAGTCAATGGCACCCTTTCAAAGCCCACATAAGTTGGTGGCATCCTTTCAATTA
*
301527 TTTCAAAAGCCTACAAGTCAATGGCATCCTTT-TAAAGCCCACAAGTCAGTGGCACCCTTTCAAA
1 TTTC-AAAGCCTACAAGTCAATGGCATCCTTTCAAAAGCCCACAAGTCAGTGGCACCCTTTCAAA
* *
301591 GCACACAAGTCAATGGTATCCTTTCAAAGCCCACATAAGTTG
65 GCACACAAGTCAATGGCACCCTTTCAAAGCCCACATAAGTTG
301633 ATGACAAACC
Statistics
Matches: 92, Mismatches: 10, Indels: 6
0.85 0.09 0.06
Matches are distributed among these distances:
121 2 0.02
122 55 0.60
123 26 0.28
124 9 0.10
ACGTcount: A:0.31, C:0.27, G:0.16, T:0.26
Consensus pattern (124 bp):
TTTCAAAGCCTACAAGTCAATGGCATCCTTTCAAAAGCCCACAAGTCAGTGGCACCCTTTCAAAG
CACACAAGTCAATGGCACCCTTTCAAAGCCCACATAAGTTGGTGGCATCCTTTCAATTA
Found at i:301579 original size:66 final size:66
Alignment explanation
Indices: 301466--301589 Score: 176
Period size: 66 Copynumber: 1.9 Consensus size: 66
301456 GCACCCTTTT
* * ** *
301466 AAAGCCCACAAGTCAGTGGCACCCTTTCAAAGCCCATAAGTTGGTGGCATCCTTTCAATTATTTC
1 AAAGCCCACAAGTCAATGGCACCCTTTCAAAGCCCACAAGTCAGTGGCACCCTTTCAATTATTTC
301531 A
66 A
* * *
301532 AAAGCCTACAAGTCAATGGCATCCTTTTAAAGCCCACAAGTCAGTGGCACCCTTTCAA
1 AAAGCCCACAAGTCAATGGCACCCTTTCAAAGCCCACAAGTCAGTGGCACCCTTTCAA
301590 AGCACACAAG
Statistics
Matches: 50, Mismatches: 8, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
66 50 1.00
ACGTcount: A:0.31, C:0.28, G:0.16, T:0.25
Consensus pattern (66 bp):
AAAGCCCACAAGTCAATGGCACCCTTTCAAAGCCCACAAGTCAGTGGCACCCTTTCAATTATTTC
A
Found at i:301612 original size:94 final size:94
Alignment explanation
Indices: 301433--301617 Score: 298
Period size: 94 Copynumber: 2.0 Consensus size: 94
301423 AGTGGTATCC
*
301433 TTTCAAAAGCCTACAAGTCCATGGCACCCTTTTAAAGCCCACAAGTCAGTGGCACCCTTTCAAAG
1 TTTCAAAAGCCTACAAGTCAATGGCACCCTTTTAAAGCCCACAAGTCAGTGGCACCCTTTCAAAG
* * ***
301498 CCCATAAGTTGGTGGCATCCTTTCAATTA
66 CACACAAGTCAATGGCATCCTTTCAATTA
*
301527 TTTCAAAAGCCTACAAGTCAATGGCATCCTTTTAAAGCCCACAAGTCAGTGGCACCCTTTCAAAG
1 TTTCAAAAGCCTACAAGTCAATGGCACCCTTTTAAAGCCCACAAGTCAGTGGCACCCTTTCAAAG
*
301592 CACACAAGTCAATGGTATCCTTTCAA
66 CACACAAGTCAATGGCATCCTTTCAA
301618 AGCCCACATA
Statistics
Matches: 83, Mismatches: 8, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
94 83 1.00
ACGTcount: A:0.31, C:0.28, G:0.15, T:0.26
Consensus pattern (94 bp):
TTTCAAAAGCCTACAAGTCAATGGCACCCTTTTAAAGCCCACAAGTCAGTGGCACCCTTTCAAAG
CACACAAGTCAATGGCATCCTTTCAATTA
Found at i:309011 original size:79 final size:79
Alignment explanation
Indices: 308919--309107 Score: 222
Period size: 79 Copynumber: 2.4 Consensus size: 79
308909 TCATTCATGT
* * * * ** * *
308919 TTTTATTTCCAAAACACTAATTTTTTACAATCGGGGATACTCCAACCCTGTTATTTTC-GAGGGG
1 TTTTATTTTCAAAACACCAATTTTTCACAATCGGAGATACTCCAACCCCATTA-TTGCAAAGGGG
*
308983 ATACTCTAACCCCA-G
65 ATACTCCAA-CCCAGG
*
308998 TTTTATTTTCAAAACACCAATTTTTCATAATCGGAGATACTCCAACCCCATTATTGCAAAGGGGA
1 TTTTATTTTCAAAACACCAATTTTTCACAATCGGAGATACTCCAACCCCATTATTGCAAAGGGGA
309063 TACTCCAACCCAGG
66 TACTCCAACCCAGG
* *
309077 TTTTATTTTTC-AAACATCAATTTTCCACAAT
1 TTTTA-TTTTCAAAACACCAATTTTTCACAAT
309108 TAGGGATACT
Statistics
Matches: 94, Mismatches: 13, Indels: 6
0.83 0.12 0.05
Matches are distributed among these distances:
78 7 0.07
79 82 0.87
80 5 0.05
ACGTcount: A:0.31, C:0.24, G:0.11, T:0.34
Consensus pattern (79 bp):
TTTTATTTTCAAAACACCAATTTTTCACAATCGGAGATACTCCAACCCCATTATTGCAAAGGGGA
TACTCCAACCCAGG
Found at i:309135 original size:51 final size:51
Alignment explanation
Indices: 309058--309224 Score: 232
Period size: 51 Copynumber: 3.3 Consensus size: 51
309048 TTATTGCAAA
* * * *
309058 GGGGATACTCCAA-CCCAGGTTTTATTTTTC-AAACATCAATTTTCCACAATT
1 GGGGATACTCTAACCCCA-GTTTTA-TTTCCAAAACATCAATTTTCCACCATC
* * *
309109 AGGGATACTCTACCCCCAGTTTTATTTCCAAAACATCGATTTTCCACCATC
1 GGGGATACTCTAACCCCAGTTTTATTTCCAAAACATCAATTTTCCACCATC
309160 GGGGATACTCTAACCCCAGTTTTATTTCCAAAACATCAA-TTTCCACCATC
1 GGGGATACTCTAACCCCAGTTTTATTTCCAAAACATCAATTTTCCACCATC
309210 GGGGATACTCTAACC
1 GGGGATACTCTAACC
309225 TCGTTATTTC
Statistics
Matches: 104, Mismatches: 10, Indels: 5
0.87 0.08 0.04
Matches are distributed among these distances:
50 30 0.29
51 70 0.67
52 4 0.04
ACGTcount: A:0.29, C:0.28, G:0.12, T:0.31
Consensus pattern (51 bp):
GGGGATACTCTAACCCCAGTTTTATTTCCAAAACATCAATTTTCCACCATC
Found at i:309273 original size:129 final size:130
Alignment explanation
Indices: 309110--309351 Score: 360
Period size: 129 Copynumber: 1.9 Consensus size: 130
309100 TCCACAATTA
* * * * * *
309110 GGGATACTCTACCCCCAGTTTTATTTCCAAAACATCGATTTTCCACCATCGGGGATACTCTAACC
1 GGGATACTCCAACCCCAGTTTTATTTCAAAAACATCAATTTTCCACAATCGCGGATACTCTAACC
* * *
309175 CCAGTTTTATTTCCAAAACATCAA-TTTCCACCATCGGGGATACTCTAACCTCGTTATTTCCAAG
66 CCAATTTTATTTCCAAAACATCAATTTTCCACAATCGCGGATACTCTAACCTCGTTATTTCCAAG
* * *
309239 GGGATACTCCAACCCCGGTTTTATTTCAAAAACATCAATTTTTCACAATCGCGGATACTCTAACT
1 GGGATACTCCAACCCCAGTTTTATTTCAAAAACATCAATTTTCCACAATCGCGGATACTCTAACC
*
309304 CCAATTTTATTTCCAAAACATCAATTTTTCACAATCGCGGATACTCTA
66 CCAATTTTATTTCCAAAACATCAATTTTCCACAATCGCGGATACTCTA
309352 GCTCCAATTT
Statistics
Matches: 99, Mismatches: 13, Indels: 1
0.88 0.12 0.01
Matches are distributed among these distances:
129 79 0.80
130 20 0.20
ACGTcount: A:0.29, C:0.28, G:0.11, T:0.32
Consensus pattern (130 bp):
GGGATACTCCAACCCCAGTTTTATTTCAAAAACATCAATTTTCCACAATCGCGGATACTCTAACC
CCAATTTTATTTCCAAAACATCAATTTTCCACAATCGCGGATACTCTAACCTCGTTATTTCCAAG
Found at i:309297 original size:180 final size:181
Alignment explanation
Indices: 308979--309433 Score: 601
Period size: 180 Copynumber: 2.5 Consensus size: 181
308969 TTATTTTCGA
* * *
308979 GGGGATACTCTAACCCCAGTTTTATTTTCAAAACACCAATTTTTCATAATCGGAGATACTCCAAC
1 GGGGATACTCTAACCCCAGTTTTATTTCCAAAACATCAATTTTTCATAATCGGGGATACTCCAAC
* * * ***
309044 CCCATTATTGCAAAGGGGATACTCCAACCCAGGTTTTATTTTTCAAACATCAATTTTCCACAATT
66 CCCGTTATTTCCAAGGGGATACTCCAACCCAGGTTTTATTTCAAAAACATCAATTTTCCACAATT
* * * *
309109 AGGGATACTCTACCCCCAGTTTTATTTCCAAAACATCGATTTTCCACCATC
131 AGGGATACTCTAACCCCAATTTTATTTCCAAAACATCAATTTTCCACAATC
* ** *
309160 GGGGATACTCTAACCCCAGTTTTATTTCCAAAACATCAA-TTTCCACCATCGGGGATACTCTAAC
1 GGGGATACTCTAACCCCAGTTTTATTTCCAAAACATCAATTTTTCATAATCGGGGATACTCCAAC
* * *
309224 CTCGTTATTTCCAAGGGGATACTCCAACCCCGGTTTTATTTCAAAAACATCAATTTTTCACAA-T
66 CCCGTTATTTCCAAGGGGATACTCCAACCCAGGTTTTATTTCAAAAACATCAATTTTCCACAATT
* * *
309288 CGCGGATACTCTAACTCCAATTTTATTTCCAAAACATCAATTTTTCACAATC
131 AG-GGATACTCTAACCCCAATTTTATTTCCAAAACATCAATTTTCCACAATC
* * * * *
309340 GCGGATACTCTAGCTCCAATTTTATTTCCAAAACATCAATTTTTCATAATCGAGGATACTCCAAC
1 GGGGATACTCTAACCCCAGTTTTATTTCCAAAACATCAATTTTTCATAATCGGGGATACTCCAAC
* *
309405 CCCGTTATTT-CATCGGGGATATTCCAACC
66 CCCGTTATTTCCA-AGGGGATACTCCAACC
309434 TTGTTATTTC
Statistics
Matches: 236, Mismatches: 35, Indels: 6
0.85 0.13 0.02
Matches are distributed among these distances:
179 2 0.01
180 154 0.65
181 80 0.34
ACGTcount: A:0.30, C:0.27, G:0.11, T:0.32
Consensus pattern (181 bp):
GGGGATACTCTAACCCCAGTTTTATTTCCAAAACATCAATTTTTCATAATCGGGGATACTCCAAC
CCCGTTATTTCCAAGGGGATACTCCAACCCAGGTTTTATTTCAAAAACATCAATTTTCCACAATT
AGGGATACTCTAACCCCAATTTTATTTCCAAAACATCAATTTTCCACAATC
Found at i:309316 original size:51 final size:51
Alignment explanation
Indices: 309257--309400 Score: 252
Period size: 51 Copynumber: 2.8 Consensus size: 51
309247 CCAACCCCGG
*
309257 TTTTATTTCAAAAACATCAATTTTTCACAATCGCGGATACTCTAACTCCAA
1 TTTTATTTCCAAAACATCAATTTTTCACAATCGCGGATACTCTAACTCCAA
*
309308 TTTTATTTCCAAAACATCAATTTTTCACAATCGCGGATACTCTAGCTCCAA
1 TTTTATTTCCAAAACATCAATTTTTCACAATCGCGGATACTCTAACTCCAA
* *
309359 TTTTATTTCCAAAACATCAATTTTTCATAATCGAGGATACTC
1 TTTTATTTCCAAAACATCAATTTTTCACAATCGCGGATACTC
309401 CAACCCCGTT
Statistics
Matches: 89, Mismatches: 4, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
51 89 1.00
ACGTcount: A:0.33, C:0.23, G:0.07, T:0.37
Consensus pattern (51 bp):
TTTTATTTCCAAAACATCAATTTTTCACAATCGCGGATACTCTAACTCCAA
Found at i:309424 original size:28 final size:28
Alignment explanation
Indices: 309388--309443 Score: 76
Period size: 28 Copynumber: 2.0 Consensus size: 28
309378 ATTTTTCATA
309388 ATCGAGGATACTCCAACCCCGTTATTTC
1 ATCGAGGATACTCCAACCCCGTTATTTC
* * **
309416 ATCGGGGATATTCCAACCTTGTTATTTC
1 ATCGAGGATACTCCAACCCCGTTATTTC
309444 TGAAGGGATA
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
28 24 1.00
ACGTcount: A:0.23, C:0.27, G:0.16, T:0.34
Consensus pattern (28 bp):
ATCGAGGATACTCCAACCCCGTTATTTC
Found at i:309552 original size:80 final size:80
Alignment explanation
Indices: 309416--309601 Score: 198
Period size: 80 Copynumber: 2.3 Consensus size: 80
309406 CCGTTATTTC
* * * *
309416 ATCGGGGATATTCCAACCTTGTTATTTCTGAAGGGATACTCCGACCCAAAACTTTATTTCTAAAA
1 ATCGGGGATACTCCAACCCTGTTATTTCCGAAGGGATACTCCAACCCAAAACTTTATTTCTAAAA
* *
309481 CATCGA-TTTTCAATA
66 CACCAATTTTTC-ATA
* ** *
309496 ATCGGGGATACTCCAACCCTGTTATTTCCG-AGGGAATACTCCAACCTC-GATTTTTATTTCTAG
1 ATCGGGGATACTCCAACCCTGTTATTTCCGAAGGG-ATACTCCAACC-CAAAACTTTATTTCTAA
*
309559 AACACCAATTTTTCGTA
64 AACACCAATTTTTCATA
* * *
309576 ATCAGGGATACTCCAGCCCCGTTATT
1 ATCGGGGATACTCCAACCCTGTTATT
309602 ATCTCTAAAA
Statistics
Matches: 89, Mismatches: 14, Indels: 6
0.82 0.13 0.06
Matches are distributed among these distances:
79 4 0.04
80 79 0.89
81 6 0.07
ACGTcount: A:0.28, C:0.24, G:0.15, T:0.33
Consensus pattern (80 bp):
ATCGGGGATACTCCAACCCTGTTATTTCCGAAGGGATACTCCAACCCAAAACTTTATTTCTAAAA
CACCAATTTTTCATA
Found at i:317683 original size:14 final size:14
Alignment explanation
Indices: 317664--317697 Score: 59
Period size: 14 Copynumber: 2.4 Consensus size: 14
317654 ACAAGGCATG
*
317664 GAGAATGAGATAAA
1 GAGAATAAGATAAA
317678 GAGAATAAGATAAA
1 GAGAATAAGATAAA
317692 GAGAAT
1 GAGAAT
317698 TCCCTCGCTT
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
14 19 1.00
ACGTcount: A:0.59, C:0.00, G:0.26, T:0.15
Consensus pattern (14 bp):
GAGAATAAGATAAA
Found at i:322749 original size:61 final size:61
Alignment explanation
Indices: 322633--323115 Score: 519
Period size: 61 Copynumber: 8.1 Consensus size: 61
322623 GAGTAGGATG
* * * * * *
322633 CCTTTCAAAGCCCACACAAGCTGGTGGCATTTTTCTAGACCTCAAAGAGCTGGACACCTTTT
1 CCTTTTAAAGCCCACACAAGTTGGTGGCA-TCTTCCAGTCCTCAAAGAGCAGGACACCTTTT
* *
322695 CCTTTTAAAGTCCACACAAGTTGGTAGCATCTTCCAGTCCTCAAAGAGCAGGACACCTTTT
1 CCTTTTAAAGCCCACACAAGTTGGTGGCATCTTCCAGTCCTCAAAGAGCAGGACACCTTTT
* * * * *
322756 CCTTTTAAAGCCCACACAAGTTAGTGTCAT-TTCCCAGTCCTCAAAGAGTA--AGA----TG
1 CCTTTTAAAGCCCACACAAGTTGGTGGCATCTT-CCAGTCCTCAAAGAGCAGGACACCTTTT
* * * * *
322811 CCTTTTAAAGCCCACACATGTTGGTGGCAATTTTCTAGTCCTCAAAGAGCAGGACGCTTTTT
1 CCTTTTAAAGCCCACACAAGTTGGTGGC-ATCTTCCAGTCCTCAAAGAGCAGGACACCTTTT
* * * * *
322873 CCTTTTAAAGCCCACACAAGTCGGTGGCACCTTCTAGTCCTCGAAGAGCAGGACGCCTTTT
1 CCTTTTAAAGCCCACACAAGTTGGTGGCATCTTCCAGTCCTCAAAGAGCAGGACACCTTTT
* * * * *
322934 CCTTTTAAAGCCCACACAAGTTGGTGGCATTTTCCCGTCCTCAAAGACCA--AGA----TG
1 CCTTTTAAAGCCCACACAAGTTGGTGGCATCTTCCAGTCCTCAAAGAGCAGGACACCTTTT
* * *
322989 CCTTTTAAAGCCCACAAAAGTTGGTGGCA-CTTTCCAGTCTTCAAAGAGCAGGACGCCTTTT
1 CCTTTTAAAGCCCACACAAGTTGGTGGCATC-TTCCAGTCCTCAAAGAGCAGGACACCTTTT
* * *
323050 CCTTTTAAAGCCCACACAAGCTGGTGGCACCTT-CAGTCCTCAAAGAGCAGGACGCCTTTT
1 CCTTTTAAAGCCCACACAAGTTGGTGGCATCTTCCAGTCCTCAAAGAGCAGGACACCTTTT
323110 CCTTTT
1 CCTTTT
323116 CTCCTTTGCC
Statistics
Matches: 354, Mismatches: 50, Indels: 36
0.80 0.11 0.08
Matches are distributed among these distances:
55 71 0.20
56 17 0.05
57 3 0.01
58 1 0.00
59 3 0.01
60 34 0.10
61 172 0.49
62 53 0.15
ACGTcount: A:0.26, C:0.28, G:0.18, T:0.28
Consensus pattern (61 bp):
CCTTTTAAAGCCCACACAAGTTGGTGGCATCTTCCAGTCCTCAAAGAGCAGGACACCTTTT
Found at i:322871 original size:116 final size:116
Alignment explanation
Indices: 322633--323115 Score: 451
Period size: 116 Copynumber: 4.1 Consensus size: 116
322623 GAGTAGGATG
* * * * * *
322633 CCTTTCAAAGCCCACACAAGCTGGTGGCATTTTTCTAGACCTCAAAGAGCTGGACACCTTTTCCT
1 CCTTTTAAAGCCCACACAAGTTGGTGGCA-CTTTCCAGTCCTCAAAGAGC---A-AGC-TTTCCT
* * *
322698 TTTAAAGTCCACACAAGTTGGTAGCATCTTCCAGTCCTCAAAGAGCAGGACACCTTTT
60 TTTAAAGCCCACACAAGTTGGTGGCATCTTCCAGTCCTCAAAGAGCAGGAC-GCTTTT
* * * * *
322756 CCTTTTAAAGCCCACACAAGTTAGTGTCA-TTTCCCAGTCCTCAAAGAGTAAG-ATGCCTTTTAA
1 CCTTTTAAAGCCCACACAAGTTGGTGGCACTTT-CCAGTCCTCAAAGAGCAAGCTTTCCTTTTAA
* * *
322819 AGCCCACACATGTTGGTGGCAATTTTCTAGTCCTCAAAGAGCAGGACGCTTTTT
65 AGCCCACACAAGTTGGTGGC-ATCTTCCAGTCCTCAAAGAGCAGGACGC-TTTT
* * * *
322873 CCTTTTAAAGCCCACACAAGTCGGTGGCACCTTCTAGTCCTCGAAGAGCAGGACGCCTTTTCCTT
1 CCTTTTAAAGCCCACACAAGTTGGTGGCACTTTCCAGTCCTCAAAGAGCA--A-G-C-TTTCCTT
* * * * *
322938 TTAAAGCCCACACAAGTTGGTGGCATTTTCCCGTCCTCAAAGACCA--A-G--ATG
61 TTAAAGCCCACACAAGTTGGTGGCATCTTCCAGTCCTCAAAGAGCAGGACGCTTTT
* *
322989 CCTTTTAAAGCCCACAAAAGTTGGTGGCACTTTCCAGTCTTCAAAGAGCAGGACGCCTTTTCCTT
1 CCTTTTAAAGCCCACACAAGTTGGTGGCACTTTCCAGTCCTCAAAGAGCA--A-G-C-TTTCCTT
* *
323054 TTAAAGCCCACACAAGCTGGTGGCACCTT-CAGTCCTCAAAGAGCAGGACGCCTTTT
61 TTAAAGCCCACACAAGTTGGTGGCATCTTCCAGTCCTCAAAGAGCAGGACG-CTTTT
323110 CCTTTT
1 CCTTTT
323116 CTCCTTTGCC
Statistics
Matches: 300, Mismatches: 44, Indels: 34
0.79 0.12 0.09
Matches are distributed among these distances:
115 14 0.05
116 113 0.38
117 69 0.23
118 4 0.01
119 3 0.01
120 2 0.01
121 10 0.03
122 32 0.11
123 53 0.18
ACGTcount: A:0.26, C:0.28, G:0.18, T:0.28
Consensus pattern (116 bp):
CCTTTTAAAGCCCACACAAGTTGGTGGCACTTTCCAGTCCTCAAAGAGCAAGCTTTCCTTTTAAA
GCCCACACAAGTTGGTGGCATCTTCCAGTCCTCAAAGAGCAGGACGCTTTT
Found at i:322914 original size:178 final size:178
Alignment explanation
Indices: 322613--323115 Score: 744
Period size: 178 Copynumber: 2.8 Consensus size: 178
322603 TTCACCCTTT
* * * * *
322613 AGTCCTCAAAGAGTAGGATGCCTTTCAAAGCCCACACAAGCTGGTGGCATTTTTCTAGACCTCAA
1 AGTCCTCAAAGAGTAAGATGCCTTTTAAAGCCCACACAAGTTGGTGGCAATTTTCTAGTCCTCAA
* * * * * *
322678 AGAGCTGGACACCTTTTCCTTTTAAAGTCCACACAAGTTGGTAGCATCTTCCAGTCCTCAAAGAG
66 AGAGCAGGACGCCTTTTCCTTTTAAAGCCCACACAAGTCGGTGGCACCTT-CAGTCCTCAAAGAG
* *
322743 CAGGACACCTTTTCCTTTTAAAGCCCACACAAGTTAGTGTCA-TTTCCC
130 CAGGACGCCTTTTCCTTTTAAAGCCCACACAAGTTAGTGGCATTTTCCC
*
322791 AGTCCTCAAAGAGTAAGATGCCTTTTAAAGCCCACACATGTTGGTGGCAATTTTCTAGTCCTCAA
1 AGTCCTCAAAGAGTAAGATGCCTTTTAAAGCCCACACAAGTTGGTGGCAATTTTCTAGTCCTCAA
* *
322856 AGAGCAGGACGCTTTTTCCTTTTAAAGCCCACACAAGTCGGTGGCACCTTCTAGTCCTCGAAGAG
66 AGAGCAGGACGCCTTTTCCTTTTAAAGCCCACACAAGTCGGTGGCACCTTC-AGTCCTCAAAGAG
*
322921 CAGGACGCCTTTTCCTTTTAAAGCCCACACAAGTTGGTGGCATTTTCCC
130 CAGGACGCCTTTTCCTTTTAAAGCCCACACAAGTTAGTGGCATTTTCCC
** * * * *
322970 -GTCCTCAAAGACCAAGATGCCTTTTAAAGCCCACAAAAGTTGGTGGC-ACTTTCCAGTCTTCAA
1 AGTCCTCAAAGAGTAAGATGCCTTTTAAAGCCCACACAAGTTGGTGGCAATTTTCTAGTCCTCAA
323033 AGAGCAGGACGCCTTTTCCTTTTAAAGCCCACACAAG-CTGGTGGCACCTTCAGTCCTCAAAGAG
66 AGAGCAGGACGCCTTTTCCTTTTAAAGCCCACACAAGTC-GGTGGCACCTTCAGTCCTCAAAGAG
323097 CAGGACGCCTTTTCCTTTT
130 CAGGACGCCTTTTCCTTTT
323116 CTCCTTTGCC
Statistics
Matches: 296, Mismatches: 26, Indels: 8
0.90 0.08 0.02
Matches are distributed among these distances:
176 32 0.11
177 62 0.21
178 196 0.66
179 6 0.02
ACGTcount: A:0.26, C:0.28, G:0.19, T:0.27
Consensus pattern (178 bp):
AGTCCTCAAAGAGTAAGATGCCTTTTAAAGCCCACACAAGTTGGTGGCAATTTTCTAGTCCTCAA
AGAGCAGGACGCCTTTTCCTTTTAAAGCCCACACAAGTCGGTGGCACCTTCAGTCCTCAAAGAGC
AGGACGCCTTTTCCTTTTAAAGCCCACACAAGTTAGTGGCATTTTCCC
Found at i:323195 original size:46 final size:43
Alignment explanation
Indices: 323143--323356 Score: 171
Period size: 46 Copynumber: 4.8 Consensus size: 43
323133 GCAAGACACC
*
323143 TTTTCTTTTTTTCTTTTGTCCTCAAAGAGCAGGACGTACTTCAT
1 TTTTC-TTTTTTCTTTTGTCCTCAAAGAGCAGGACGCACTTCAT
** * * * *
323187 TTCCTTCTTTTCCCTTCTAGTTCTCAAACAGTAGGACGCACTTCAT
1 TT--TTCTTTTTTCTT-TTGTCCTCAAAGAGCAGGACGCACTTCAT
** * * *
323233 TTCCTTCTTTTCCCTTCTAGTTCTCAAAGAGCAGGACGCACTTTA-
1 TT--TTCTTTTTTCTT-TTGTCCTCAAAGAGCAGGACGCACTTCAT
* * * *
323278 TTTTCTTTTTTCTTTTGTCCTCAAAGAGGAGGATGCATTTCGT
1 TTTTCTTTTTTCTTTTGTCCTCAAAGAGCAGGACGCACTTCAT
* *
323321 TTTCCTTTTTTTCCTTTGTCCTCGAAA-AGCAGGACG
1 TTTTC-TTTTTTCTTTTGTCCTC-AAAGAGCAGGACG
323357 TACTCTTTTT
Statistics
Matches: 141, Mismatches: 23, Indels: 12
0.80 0.13 0.07
Matches are distributed among these distances:
42 21 0.15
43 14 0.10
44 25 0.18
45 12 0.09
46 69 0.49
ACGTcount: A:0.18, C:0.24, G:0.14, T:0.43
Consensus pattern (43 bp):
TTTTCTTTTTTCTTTTGTCCTCAAAGAGCAGGACGCACTTCAT
Found at i:323324 original size:42 final size:44
Alignment explanation
Indices: 323274--323356 Score: 84
Period size: 44 Copynumber: 1.9 Consensus size: 44
323264 CAGGACGCAC
* * *
323274 TTTATTTT-C-TTTTTTCTTTTGTCCTCAAAGAGGAGGATGCA-
1 TTTATTTTCCTTTTTTTCCTTTGTCCTCAAAGAGCAGGACGCAC
*
323315 TTTCGTTTTCCTTTTTTTCCTTTGTCCTCGAAA-AGCAGGACG
1 TTT-ATTTTCCTTTTTTTCCTTTGTCCTC-AAAGAGCAGGACG
323357 TACTCTTTTT
Statistics
Matches: 34, Mismatches: 4, Indels: 5
0.79 0.09 0.12
Matches are distributed among these distances:
41 3 0.09
42 4 0.12
43 1 0.03
44 23 0.68
45 3 0.09
ACGTcount: A:0.17, C:0.19, G:0.17, T:0.47
Consensus pattern (44 bp):
TTTATTTTCCTTTTTTTCCTTTGTCCTCAAAGAGCAGGACGCAC
Found at i:326495 original size:79 final size:78
Alignment explanation
Indices: 326390--326599 Score: 271
Period size: 79 Copynumber: 2.6 Consensus size: 78
326380 TTTCATTCTT
* *
326390 GTTTTTATTTCCAAAACA-CTAATTTTTTACAATCGGGGATACTCCAACCCCGTTATTTTCGAA-
1 GTTTTT-TTT-CAAAACATC-AATTTTTCACAATCGGGGATACTCCAACCCCGTTA-TTTCCAAG
*
326453 CGGATACTCCAACCCTG
62 CGGATACTCCAACCCCG
* * *
326470 GTTTTGTTTTCAAAACATCAATTTTTCATAATCGGGGATACTCCAACCCCATTATTTCCAAGGGG
1 GTTTT-TTTTCAAAACATCAATTTTTCACAATCGGGGATACTCCAACCCCGTTATTTCCAAGCGG
326535 ATACTCCAACCCCG
65 ATACTCCAACCCCG
* * *
326549 GTTTTATTTCTAAAACATCAATTTTCCACAATCGGGGATACTCAAACCCCG
1 GTTTTTTTTC-AAAACATCAATTTTTCACAATCGGGGATACTCCAACCCCG
326600 ATTTTATTTC
Statistics
Matches: 115, Mismatches: 11, Indels: 9
0.85 0.08 0.07
Matches are distributed among these distances:
78 10 0.09
79 95 0.83
80 9 0.08
81 1 0.01
ACGTcount: A:0.29, C:0.26, G:0.13, T:0.32
Consensus pattern (78 bp):
GTTTTTTTTCAAAACATCAATTTTTCACAATCGGGGATACTCCAACCCCGTTATTTCCAAGCGGA
TACTCCAACCCCG
Found at i:326597 original size:51 final size:51
Alignment explanation
Indices: 326531--326647 Score: 180
Period size: 51 Copynumber: 2.3 Consensus size: 51
326521 TTATTTCCAA
* * *
326531 GGGGATACTCCAACCCCGGTTTTATTTCTAAAACATCAATTTTCCACAATC
1 GGGGATACTCAAACCCCGATTTTATTTCCAAAACATCAATTTTCCACAATC
* *
326582 GGGGATACTCAAACCCCGATTTTATTTCCAAAACATCGATTTTCCACCATC
1 GGGGATACTCAAACCCCGATTTTATTTCCAAAACATCAATTTTCCACAATC
*
326633 GGGGATACTCTAACC
1 GGGGATACTCAAACC
326648 ACGTTATTTC
Statistics
Matches: 60, Mismatches: 6, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
51 60 1.00
ACGTcount: A:0.29, C:0.28, G:0.14, T:0.29
Consensus pattern (51 bp):
GGGGATACTCAAACCCCGATTTTATTTCCAAAACATCAATTTTCCACAATC
Found at i:326717 original size:51 final size:52
Alignment explanation
Indices: 326661--326779 Score: 163
Period size: 51 Copynumber: 2.3 Consensus size: 52
326651 TTATTTCCAA
* *
326661 GGGGATACTTCAACCCCAG-TTTTATTTCTAAAACATC-AATTTTCCACAATC
1 GGGGATACTCCAACCCCAGATTTTATTTCCAAAACATCAAATTTT-CACAATC
* * *
326712 GGGGATACTCCAA-CTCTGATTTTATTTCCAAAGCATCAAATTTTCACAATC
1 GGGGATACTCCAACCCCAGATTTTATTTCCAAAACATCAAATTTTCACAATC
326763 GGGGATACTCCAACCCC
1 GGGGATACTCCAACCCC
326780 GTTATTTCAT
Statistics
Matches: 59, Mismatches: 6, Indels: 5
0.84 0.09 0.07
Matches are distributed among these distances:
50 3 0.05
51 48 0.81
52 8 0.14
ACGTcount: A:0.30, C:0.27, G:0.13, T:0.30
Consensus pattern (52 bp):
GGGGATACTCCAACCCCAGATTTTATTTCCAAAACATCAAATTTTCACAATC
Found at i:326797 original size:130 final size:130
Alignment explanation
Indices: 326454--326787 Score: 508
Period size: 130 Copynumber: 2.6 Consensus size: 130
326444 ATTTTCGAAC
* * * * *
326454 GGATACTCCAACCCTGGTTTTGTTTTCAAAACATCAATTTTTCATAATCGGGGATACTCCAACCC
1 GGATACTCCAACCCTGATTTTATTTCCAAAACATCAAATTTTCACAATCGGGGATACTCCAACCC
* * *
326519 CATTATTTCCAAGGGGATACTCCAACCCCGGTTTTATTTCTAAAACATCAATTTTCCACAATCGG
66 CGTTATTTCCAAGGGGATACTTCAACCCCAGTTTTATTTCTAAAACATCAATTTTCCACAATCGG
* * * * *
326584 GGATACTCAAACCCCGATTTTATTTCCAAAACATC-GATTTTCCACCATCGGGGATACTCTAACC
1 GGATACTCCAACCCTGATTTTATTTCCAAAACATCAAATTTT-CACAATCGGGGATACTCCAACC
*
326648 ACGTTATTTCCAAGGGGATACTTCAACCCCAGTTTTATTTCTAAAACATCAATTTTCCACAATCG
65 CCGTTATTTCCAAGGGGATACTTCAACCCCAGTTTTATTTCTAAAACATCAATTTTCCACAATCG
326713 G
130 G
* *
326714 GGATACTCCAACTCTGATTTTATTTCCAAAGCATCAAATTTTCACAATCGGGGATACTCCAACCC
1 GGATACTCCAACCCTGATTTTATTTCCAAAACATCAAATTTTCACAATCGGGGATACTCCAACCC
326779 CGTTATTTC
66 CGTTATTTC
326788 ATCGAGGATA
Statistics
Matches: 180, Mismatches: 22, Indels: 4
0.87 0.11 0.02
Matches are distributed among these distances:
129 4 0.02
130 171 0.95
131 5 0.03
ACGTcount: A:0.29, C:0.27, G:0.13, T:0.32
Consensus pattern (130 bp):
GGATACTCCAACCCTGATTTTATTTCCAAAACATCAAATTTTCACAATCGGGGATACTCCAACCC
CGTTATTTCCAAGGGGATACTTCAACCCCAGTTTTATTTCTAAAACATCAATTTTCCACAATCGG
Found at i:326823 original size:27 final size:29
Alignment explanation
Indices: 326763--326833 Score: 87
Period size: 27 Copynumber: 2.6 Consensus size: 29
326753 TTTCACAATC
326763 GGGGATACTCCAACCCCGTTATTTCATCGA
1 GGGGATACTCCAA-CCCGTTATTTCATCGA
*
326793 --GGATATTCCAACCCGTTATTTC-T-GA
1 GGGGATACTCCAACCCGTTATTTCATCGA
*
326818 GGGGATACTCTAACCC
1 GGGGATACTCCAACCC
326834 CGACTTTATT
Statistics
Matches: 36, Mismatches: 3, Indels: 7
0.78 0.07 0.15
Matches are distributed among these distances:
25 2 0.06
26 1 0.03
27 23 0.64
28 10 0.28
ACGTcount: A:0.24, C:0.28, G:0.20, T:0.28
Consensus pattern (29 bp):
GGGGATACTCCAACCCGTTATTTCATCGA
Found at i:326947 original size:80 final size:78
Alignment explanation
Indices: 326788--326960 Score: 197
Period size: 80 Copynumber: 2.2 Consensus size: 78
326778 CCGTTATTTC
* *
326788 ATCGAGGATATTCCAACCCGTTATTTCTGAGGGGATACTCTAACCCCGACTTTATTTCTAAAACA
1 ATCGGGGATATTCCAACCCGTTATTTCCGAGGGGATACTCTAACCCCGACTTTATTTCTAAAACA
*
326853 TCGATTTTCTATA
66 CCGATTTTCTATA
* * * * * * *
326866 ATTGGGGATATTCTAACCTTGTTATTTCCGAGGGTATACT-TCAACCTCGATTTTTATTTCTAGA
1 ATCGGGGATATTCCAACC-CGTTATTTCCGAGGGGATACTCT-AACCCCGA-CTTTATTTCTAAA
326930 ACACCGATTTT-TCATA
63 ACACCGATTTTCT-ATA
*
326946 ATCGGGGATACTCCA
1 ATCGGGGATATTCCA
326961 GCCCCGTTGT
Statistics
Matches: 78, Mismatches: 13, Indels: 6
0.80 0.13 0.06
Matches are distributed among these distances:
78 16 0.21
79 26 0.33
80 36 0.46
ACGTcount: A:0.27, C:0.21, G:0.16, T:0.36
Consensus pattern (78 bp):
ATCGGGGATATTCCAACCCGTTATTTCCGAGGGGATACTCTAACCCCGACTTTATTTCTAAAACA
CCGATTTTCTATA
Found at i:330252 original size:19 final size:19
Alignment explanation
Indices: 330228--330291 Score: 68
Period size: 19 Copynumber: 3.7 Consensus size: 19
330218 TTTCAGCGAT
*
330228 TTGTATCGATACATAAGTG
1 TTGTATCAATACATAAGTG
330247 TTGTATCAATAC--AA---
1 TTGTATCAATACATAAGTG
*
330261 -TGTATCGATACATAAGTG
1 TTGTATCAATACATAAGTG
330279 TTGTATCAATACA
1 TTGTATCAATACA
330292 ATGTATCGCT
Statistics
Matches: 36, Mismatches: 3, Indels: 12
0.71 0.06 0.24
Matches are distributed among these distances:
13 10 0.28
15 2 0.06
17 2 0.06
19 22 0.61
ACGTcount: A:0.36, C:0.12, G:0.16, T:0.36
Consensus pattern (19 bp):
TTGTATCAATACATAAGTG
Found at i:330270 original size:32 final size:32
Alignment explanation
Indices: 330229--330299 Score: 142
Period size: 32 Copynumber: 2.2 Consensus size: 32
330219 TTCAGCGATT
330229 TGTATCGATACATAAGTGTTGTATCAATACAA
1 TGTATCGATACATAAGTGTTGTATCAATACAA
330261 TGTATCGATACATAAGTGTTGTATCAATACAA
1 TGTATCGATACATAAGTGTTGTATCAATACAA
330293 TGTATCG
1 TGTATCG
330300 CTAAAGCTAC
Statistics
Matches: 39, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
32 39 1.00
ACGTcount: A:0.35, C:0.13, G:0.17, T:0.35
Consensus pattern (32 bp):
TGTATCGATACATAAGTGTTGTATCAATACAA
Found at i:332965 original size:52 final size:53
Alignment explanation
Indices: 332886--332985 Score: 139
Period size: 52 Copynumber: 1.9 Consensus size: 53
332876 GATTTCTCAC
* * * *
332886 AATCGGGGATACTCTAACCCCGGTTTTATTTTC-AAAACACCAATTTTCCTTT
1 AATCAGGGATACTCCAACCCCGATTTTATTTCCAAAAACACCAATTTTCCTTT
* *
332938 AATCAGGGATACTCCAGCTCCGATTTTATTTCCAAAAACACCAATTTT
1 AATCAGGGATACTCCAACCCCGATTTTATTTCCAAAAACACCAATTTT
332986 TTCACAATCG
Statistics
Matches: 41, Mismatches: 6, Indels: 1
0.85 0.12 0.02
Matches are distributed among these distances:
52 27 0.66
53 14 0.34
ACGTcount: A:0.30, C:0.25, G:0.11, T:0.34
Consensus pattern (53 bp):
AATCAGGGATACTCCAACCCCGATTTTATTTCCAAAAACACCAATTTTCCTTT
Found at i:333001 original size:53 final size:53
Alignment explanation
Indices: 332841--333009 Score: 143
Period size: 51 Copynumber: 3.2 Consensus size: 53
332831 ATTTCTGAAG
** * * *** *
332841 GGATACTCCAACCCCGGCTTCATTTCCAAAATATTGA-TTTC-TCACAATCGG
1 GGATACTCCAACCCCGATTTTATTTCCAAAACACCAATTTTCTTCACAATCGA
* * * *
332892 GGATACTCTAACCCCGGTTTTATTTTCAAAACACCAATTTTCCTT--TAATC-A
1 GGATACTCCAACCCCGATTTTATTTCCAAAACACCAATTTT-CTTCACAATCGA
* *
332943 GGGATACTCCAGCTCCGATTTTATTTCCAAAAACACCAATTTT-TTCACAATCGA
1 -GGATACTCCAACCCCGATTTTATTTCC-AAAACACCAATTTTCTTCACAATCGA
332997 GGATACTCCAACC
1 GGATACTCCAACC
333010 TCGTTATTTC
Statistics
Matches: 92, Mismatches: 18, Indels: 14
0.74 0.15 0.11
Matches are distributed among these distances:
51 31 0.34
52 29 0.32
53 30 0.33
54 2 0.02
ACGTcount: A:0.30, C:0.28, G:0.11, T:0.31
Consensus pattern (53 bp):
GGATACTCCAACCCCGATTTTATTTCCAAAACACCAATTTTCTTCACAATCGA
Found at i:338680 original size:184 final size:182
Alignment explanation
Indices: 338363--338699 Score: 435
Period size: 184 Copynumber: 1.8 Consensus size: 182
338353 CAATTCTCCG
* * * * * * * *
338363 CAATCGGGGATATTCCATCTCTGATTTTATTTTCAAAACACTAATTTTCTATACTCGGGGATACC
1 CAATCGGGGATACTCCAACCCCGATTTTATTTTCAAAACACCAATTTTCTATAATCAGAGATACC
* * *
338428 CCAACTTCGATTTTATTTCCAAAAAAACACCAATTTTTCACAATCGGGGATACTCCAACCCCGTT
66 CCAACTCCGATTTTATTTCC-AAAAAACACAAATTTTTCACAATCGAGGATACTCCAACCCCGTT
338493 ATTT-TCGAAGGGATACTCCAACCTCGGCTTCATTTCGAAAATATTGATTTCTCA
130 ATTTATCG-A-GGATACTCCAACCTCGGCTTCATTTCGAAAATATTGATTTCTCA
* * *
338547 CAATCGGGGATACTCCAACCCCGGTTTTATTTTCAAAGCACCAATTTTCCTTTAATCAGAGATAC
1 CAATCGGGGATACTCCAACCCCGATTTTATTTTCAAAACACCAATTTT-CTATAATCAGAGATAC
* * * **
338612 TCCAGCTCCGATTTTATTTCC-ATAAACACAAATTTTTTCACAATCGAGGATACTCCAACCTTGT
65 CCCAACTCCGATTTTATTTCCAAAAAACACAAA-TTTTTCACAATCGAGGATACTCCAACCCCGT
338676 TATTTCATCGAGGATACTCCAACC
129 TATTT-ATCGAGGATACTCCAACC
338700 CCATTACCTC
Statistics
Matches: 130, Mismatches: 19, Indels: 8
0.83 0.12 0.05
Matches are distributed among these distances:
183 9 0.07
184 87 0.67
185 31 0.24
186 3 0.02
ACGTcount: A:0.29, C:0.26, G:0.12, T:0.33
Consensus pattern (182 bp):
CAATCGGGGATACTCCAACCCCGATTTTATTTTCAAAACACCAATTTTCTATAATCAGAGATACC
CCAACTCCGATTTTATTTCCAAAAAACACAAATTTTTCACAATCGAGGATACTCCAACCCCGTTA
TTTATCGAGGATACTCCAACCTCGGCTTCATTTCGAAAATATTGATTTCTCA
Found at i:340676 original size:17 final size:17
Alignment explanation
Indices: 340654--340688 Score: 70
Period size: 17 Copynumber: 2.1 Consensus size: 17
340644 GTAGCGACAA
340654 GCTTAACATGGATGTTG
1 GCTTAACATGGATGTTG
340671 GCTTAACATGGATGTTG
1 GCTTAACATGGATGTTG
340688 G
1 G
340689 TGAACGTACG
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 18 1.00
ACGTcount: A:0.23, C:0.11, G:0.31, T:0.34
Consensus pattern (17 bp):
GCTTAACATGGATGTTG
Found at i:352767 original size:52 final size:51
Alignment explanation
Indices: 352689--352837 Score: 235
Period size: 52 Copynumber: 2.9 Consensus size: 51
352679 CGAAATATGA
352689 AAATTTGCCTGCATGTATCGATACATTGAATAGTGTATCGATACATCTGGGC
1 AAATTTGCCTGCATGTATCGATACATTG-ATAGTGTATCGATACATCTGGGC
* *
352741 AAATTTGCCTGCATGTATCGATACATTTTATAATGTATCGATACATCTGGGC
1 AAATTTGCCTGCATGTATCGATACA-TTGATAGTGTATCGATACATCTGGGC
**
352793 AAATTTGCCTGCATGTATCGATACAAAGATCAGTGTATCGATACA
1 AAATTTGCCTGCATGTATCGATACATTGAT-AGTGTATCGATACA
352838 ATGTATCGAT
Statistics
Matches: 89, Mismatches: 6, Indels: 4
0.90 0.06 0.04
Matches are distributed among these distances:
51 2 0.02
52 85 0.96
53 2 0.02
ACGTcount: A:0.31, C:0.17, G:0.19, T:0.33
Consensus pattern (51 bp):
AAATTTGCCTGCATGTATCGATACATTGATAGTGTATCGATACATCTGGGC
Found at i:352844 original size:13 final size:13
Alignment explanation
Indices: 352826--352850 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
352816 CAAAGATCAG
352826 TGTATCGATACAA
1 TGTATCGATACAA
352839 TGTATCGATACA
1 TGTATCGATACA
352851 TTTAAGTGAT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.36, C:0.16, G:0.16, T:0.32
Consensus pattern (13 bp):
TGTATCGATACAA
Found at i:352928 original size:33 final size:33
Alignment explanation
Indices: 352891--352957 Score: 98
Period size: 33 Copynumber: 2.0 Consensus size: 33
352881 AGTAGCTTAA
352891 ATTGTATCGATACAAAAAAATATGTATCGATAC
1 ATTGTATCGATACAAAAAAATATGTATCGATAC
* ***
352924 ATTGTATCGATACAACACTTTATGTATCGATAC
1 ATTGTATCGATACAAAAAAATATGTATCGATAC
352957 A
1 A
352958 AATCGTTGAA
Statistics
Matches: 30, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
33 30 1.00
ACGTcount: A:0.40, C:0.15, G:0.12, T:0.33
Consensus pattern (33 bp):
ATTGTATCGATACAAAAAAATATGTATCGATAC
Found at i:352931 original size:13 final size:13
Alignment explanation
Indices: 352913--352937 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
352903 CAAAAAAATA
352913 TGTATCGATACAT
1 TGTATCGATACAT
352926 TGTATCGATACA
1 TGTATCGATACA
352938 ACACTTTATG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.36
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:353938 original size:1 final size:1
Alignment explanation
Indices: 353932--353994 Score: 54
Period size: 1 Copynumber: 63.0 Consensus size: 1
353922 CCTTCTCTTC
* * * * * * * *
353932 AAAAAAAACAAAAAAAACAAAAAAACAAAAAAACAAAACAAAGAAAAAAGAAAAAAAGAAAAA
1 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
353995 TCTGCTTAAG
Statistics
Matches: 46, Mismatches: 16, Indels: 0
0.74 0.26 0.00
Matches are distributed among these distances:
1 46 1.00
ACGTcount: A:0.87, C:0.08, G:0.05, T:0.00
Consensus pattern (1 bp):
A
Found at i:353945 original size:9 final size:9
Alignment explanation
Indices: 353931--353980 Score: 68
Period size: 9 Copynumber: 5.8 Consensus size: 9
353921 ACCTTCTCTT
353931 CAAAAAAAA
1 CAAAAAAAA
353940 CAAAAAAAA
1 CAAAAAAAA
353949 C-AAAAAAA
1 CAAAAAAAA
353957 C-AAAAAAA
1 CAAAAAAAA
*
353965 CAAAACAAA
1 CAAAAAAAA
*
353974 GAAAAAA
1 CAAAAAA
353981 GAAAAAAAGA
Statistics
Matches: 37, Mismatches: 3, Indels: 2
0.88 0.07 0.05
Matches are distributed among these distances:
8 16 0.43
9 21 0.57
ACGTcount: A:0.86, C:0.12, G:0.02, T:0.00
Consensus pattern (9 bp):
CAAAAAAAA
Found at i:353946 original size:8 final size:8
Alignment explanation
Indices: 353933--353994 Score: 72
Period size: 8 Copynumber: 7.6 Consensus size: 8
353923 CTTCTCTTCA
353933 AAAAAAAC
1 AAAAAAAC
353941 AAAAAAAAC
1 -AAAAAAAC
353950 AAAAAAAC
1 AAAAAAAC
353958 AAAAAAAC
1 AAAAAAAC
353966 AAAACAAA-
1 AAAA-AAAC
* *
353974 GAAAAAAG
1 AAAAAAAC
*
353982 AAAAAAAG
1 AAAAAAAC
353990 AAAAA
1 AAAAA
353995 TCTGCTTAAG
Statistics
Matches: 49, Mismatches: 2, Indels: 5
0.88 0.04 0.09
Matches are distributed among these distances:
7 3 0.06
8 35 0.71
9 11 0.22
ACGTcount: A:0.87, C:0.08, G:0.05, T:0.00
Consensus pattern (8 bp):
AAAAAAAC
Found at i:354413 original size:20 final size:20
Alignment explanation
Indices: 354390--354463 Score: 103
Period size: 20 Copynumber: 3.6 Consensus size: 20
354380 ACAATTCAAA
354390 GTATCGATACATGTTGCAAT
1 GTATCGATACATGTTGCAAT
****
354410 GTATCGATACATGAAAAAGAT
1 GTATCGATACATGTTGCA-AT
354431 GTATCGATACATGTTGCAAT
1 GTATCGATACATGTTGCAAT
354451 GTATCGATACATG
1 GTATCGATACATG
354464 AAAAAGATGT
Statistics
Matches: 45, Mismatches: 8, Indels: 2
0.82 0.15 0.04
Matches are distributed among these distances:
20 29 0.64
21 16 0.36
ACGTcount: A:0.35, C:0.14, G:0.20, T:0.31
Consensus pattern (20 bp):
GTATCGATACATGTTGCAAT
Found at i:354434 original size:21 final size:21
Alignment explanation
Indices: 354408--354483 Score: 109
Period size: 21 Copynumber: 3.7 Consensus size: 21
354398 ACATGTTGCA
354408 ATGTATCGATACATGAAAAAG
1 ATGTATCGATACATGAAAAAG
****
354429 ATGTATCGATACATGTTGCA-
1 ATGTATCGATACATGAAAAAG
354449 ATGTATCGATACATGAAAAAG
1 ATGTATCGATACATGAAAAAG
354470 ATGTATCGATACAT
1 ATGTATCGATACAT
354484 TTCTTAGAAA
Statistics
Matches: 46, Mismatches: 8, Indels: 2
0.82 0.14 0.04
Matches are distributed among these distances:
20 16 0.35
21 30 0.65
ACGTcount: A:0.41, C:0.12, G:0.18, T:0.29
Consensus pattern (21 bp):
ATGTATCGATACATGAAAAAG
Found at i:354441 original size:41 final size:41
Alignment explanation
Indices: 354390--354483 Score: 188
Period size: 41 Copynumber: 2.3 Consensus size: 41
354380 ACAATTCAAA
354390 GTATCGATACATGTTGCAATGTATCGATACATGAAAAAGAT
1 GTATCGATACATGTTGCAATGTATCGATACATGAAAAAGAT
354431 GTATCGATACATGTTGCAATGTATCGATACATGAAAAAGAT
1 GTATCGATACATGTTGCAATGTATCGATACATGAAAAAGAT
354472 GTATCGATACAT
1 GTATCGATACAT
354484 TTCTTAGAAA
Statistics
Matches: 53, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
41 53 1.00
ACGTcount: A:0.38, C:0.13, G:0.19, T:0.30
Consensus pattern (41 bp):
GTATCGATACATGTTGCAATGTATCGATACATGAAAAAGAT
Found at i:356035 original size:21 final size:21
Alignment explanation
Indices: 356002--356046 Score: 56
Period size: 21 Copynumber: 2.1 Consensus size: 21
355992 TTGCAAGTTG
*
356002 AAATAAAGAAGTTGGCTAATGA
1 AAATAAAGAAGTTAGCTAA-GA
*
356024 AAATAATG-AGTTAGCTAAGA
1 AAATAAAGAAGTTAGCTAAGA
356044 AAA
1 AAA
356047 ATGAAAACTT
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
20 5 0.24
21 9 0.43
22 7 0.33
ACGTcount: A:0.53, C:0.04, G:0.20, T:0.22
Consensus pattern (21 bp):
AAATAAAGAAGTTAGCTAAGA
Found at i:359973 original size:20 final size:20
Alignment explanation
Indices: 359894--359973 Score: 79
Period size: 20 Copynumber: 3.8 Consensus size: 20
359884 AATGTCCAAA
*
359894 ATGTATCGATACATGTTTCT
1 ATGTATCGATACATTTTTCT
* *
359914 GTGTATCGATACATCTGGAAATTCT
1 ATGTATCGATACAT-T----TTTCT
359939 ATGTATCGATACATTTTTCT
1 ATGTATCGATACATTTTTCT
*
359959 TTGTATCGATACATT
1 ATGTATCGATACATT
359974 GTATCGATAC
Statistics
Matches: 49, Mismatches: 6, Indels: 10
0.75 0.09 0.15
Matches are distributed among these distances:
20 31 0.63
24 1 0.02
25 17 0.35
ACGTcount: A:0.26, C:0.15, G:0.15, T:0.44
Consensus pattern (20 bp):
ATGTATCGATACATTTTTCT
Found at i:359977 original size:13 final size:13
Alignment explanation
Indices: 359959--359997 Score: 69
Period size: 13 Copynumber: 3.0 Consensus size: 13
359949 ACATTTTTCT
359959 TTGTATCGATACA
1 TTGTATCGATACA
359972 TTGTATCGATACA
1 TTGTATCGATACA
*
359985 CTGTATCGATACA
1 TTGTATCGATACA
359998 GGGTGATTAT
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
13 25 1.00
ACGTcount: A:0.31, C:0.18, G:0.15, T:0.36
Consensus pattern (13 bp):
TTGTATCGATACA
Found at i:364259 original size:59 final size:59
Alignment explanation
Indices: 364167--364762 Score: 710
Period size: 59 Copynumber: 10.3 Consensus size: 59
364157 TCTGCTTTTT
* *
364167 AGTCCTCAAAGAGCAGGATGCCTTTTCTTTTAAAGCCCACATAAGTTGGTGGCACCTTC
1 AGTCCTCAAAGAGCAGGACGCCTTTTCTTTTAAAGCCCACACAAGTTGGTGGCACCTTC
*
364226 AGTCCTCAAAGAGCGGGACGCCTTTTCTTTTAAAGCCCACACAAGTTGGTGGCACCTTC
1 AGTCCTCAAAGAGCAGGACGCCTTTTCTTTTAAAGCCCACACAAGTTGGTGGCACCTTC
* *
364285 AGTCCTCAAAGAGCGGGATGCCTTTTCTTTTAAAGCCCACACAAGTTGGTGGCACCTTC
1 AGTCCTCAAAGAGCAGGACGCCTTTTCTTTTAAAGCCCACACAAGTTGGTGGCACCTTC
* * *
364344 AGTCCTCAAAGAGCGGGACGCCTTTTCTTTTAAAGCCTACCCAAGTTGGTGGCACCTTC
1 AGTCCTCAAAGAGCAGGACGCCTTTTCTTTTAAAGCCCACACAAGTTGGTGGCACCTTC
* * *
364403 AGTCCTCAAAGAGCAGGATGCTTTTTCTTTTCAAAGCCCACACAAATTGGTGGCACCTTTC
1 AGTCCTCAAAGAGCAGGACGCCTTTTCTTTT-AAAGCCCACACAAGTTGGTGGCACC-TTC
* * * **
364464 AGTCCCCAAAGAGTAGGAC-CC----CTTTCAAAGCCCACACAAGTTGGTGGCATTTTCC
1 AGTCCTCAAAGAGCAGGACGCCTTTTCTTTTAAAGCCCACACAAGTTGGTGGCACCTT-C
* **
364519 AGTCCTCAAAGAGCAGGACACC-TTTC----AAAGCCCACACAAGTTGGTGGCATTTTCC
1 AGTCCTCAAAGAGCAGGACGCCTTTTCTTTTAAAGCCCACACAAGTTGGTGGCACCTT-C
* *
364574 AGTCCTCAAAGAGTAGGACACC---TC--TTAAAGCCCACACAAGTTGGTGGCACCTTTC
1 AGTCCTCAAAGAGCAGGACGCCTTTTCTTTTAAAGCCCACACAAGTTGGTGGCACC-TTC
* * * *
364629 AGTCCTCAAAGAGCAGGATGCTTTTTCTTTTCAAAGCCCACATAAGTTGGTGGCACCTTTT
1 AGTCCTCAAAGAGCAGGACGCCTTTTCTTTT-AAAGCCCACACAAGTTGGTGGCACC-TTC
* * * * *
364690 AGTCCTCAAAGAGCAGGACACC-TTTC----GAAGCCCACACGAGTTGGTGGCACTTTTT
1 AGTCCTCAAAGAGCAGGACGCCTTTTCTTTTAAAGCCCACACAAGTTGGTGGCAC-CTTC
364745 AGTCCTCAAAGAGCAGGA
1 AGTCCTCAAAGAGCAGGA
364763 TACACTTTAT
Statistics
Matches: 481, Mismatches: 39, Indels: 38
0.86 0.07 0.07
Matches are distributed among these distances:
53 2 0.00
54 2 0.00
55 174 0.36
56 8 0.02
58 2 0.00
59 199 0.41
60 29 0.06
61 65 0.14
ACGTcount: A:0.26, C:0.27, G:0.21, T:0.26
Consensus pattern (59 bp):
AGTCCTCAAAGAGCAGGACGCCTTTTCTTTTAAAGCCCACACAAGTTGGTGGCACCTTC
Found at i:364500 original size:55 final size:55
Alignment explanation
Indices: 364193--364762 Score: 551
Period size: 55 Copynumber: 9.9 Consensus size: 55
364183 GATGCCTTTT
* * *
364193 CTTTTAAAGCCCACATAAGTTGGTGGCACC-TTCAGTCCTCAAAGAGCGGGACGCC
1 CTTTCAAAGCCCACACAAGTTGGTGGCACCTTTCAGTCCTCAAAGAGCAGGAC-CC
* * *
364248 TTTTCTTTTAAAGCCCACACAAGTTGGTGGCACC-TTCAGTCCTCAAAGAGCGGGATGCCTTTT
1 ----CTTTCAAAGCCCACACAAGTTGGTGGCACCTTTCAGTCCTCAAAGAGCAGGA--CC---C
* *
364311 CTTTTAAAGCCCACACAAGTTGGTGGCACC-TTCAGTCCTCAAAGAGCGGGACGCC
1 CTTTCAAAGCCCACACAAGTTGGTGGCACCTTTCAGTCCTCAAAGAGCAGGAC-CC
* * * *
364366 TTTTCTTTTAAAGCCTACCCAAGTTGGTGGCACC-TTCAGTCCTCAAAGAGCAGGATGCTTTTTC
1 ----CTTTCAAAGCCCACACAAGTTGGTGGCACCTTTCAGTCCTCAAAGAGCAGGA--C----CC
* * * *
364430 TTTTCAAAGCCCACACAAATTGGTGGCACCTTTCAGTCCCCAAAGAGTAGGACCC
1 CTTTCAAAGCCCACACAAGTTGGTGGCACCTTTCAGTCCTCAAAGAGCAGGACCC
* *
364485 CTTTCAAAGCCCACACAAGTTGGTGGCA-TTTTCCAGTCCTCAAAGAGCAGGACAC
1 CTTTCAAAGCCCACACAAGTTGGTGGCACCTTT-CAGTCCTCAAAGAGCAGGACCC
* * *
364540 CTTTCAAAGCCCACACAAGTTGGTGGCA-TTTTCCAGTCCTCAAAGAGTAGGACAC
1 CTTTCAAAGCCCACACAAGTTGGTGGCACCTTT-CAGTCCTCAAAGAGCAGGACCC
*
364595 CTCTT-AAAGCCCACACAAGTTGGTGGCACCTTTCAGTCCTCAAAGAGCAGGATGCTTTTTC
1 CT-TTCAAAGCCCACACAAGTTGGTGGCACCTTTCAGTCCTCAAAGAGCAGGA--C----CC
* * * *
364656 TTTTCAAAGCCCACATAAGTTGGTGGCACCTTTTAGTCCTCAAAGAGCAGGACAC
1 CTTTCAAAGCCCACACAAGTTGGTGGCACCTTTCAGTCCTCAAAGAGCAGGACCC
* * * *
364711 CTTTCGAAGCCCACACGAGTTGGTGGCACTTTTTAGTCCTCAAAGAGCAGGA
1 CTTTCAAAGCCCACACAAGTTGGTGGCACCTTTCAGTCCTCAAAGAGCAGGA
364763 TACACTTTAT
Statistics
Matches: 450, Mismatches: 35, Indels: 56
0.83 0.06 0.10
Matches are distributed among these distances:
54 3 0.01
55 191 0.42
56 5 0.01
57 2 0.00
58 1 0.00
59 151 0.34
60 28 0.06
61 68 0.15
64 1 0.00
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.26
Consensus pattern (55 bp):
CTTTCAAAGCCCACACAAGTTGGTGGCACCTTTCAGTCCTCAAAGAGCAGGACCC
Found at i:365550 original size:19 final size:19
Alignment explanation
Indices: 365526--365589 Score: 77
Period size: 19 Copynumber: 3.7 Consensus size: 19
365516 TTTCAGTGAT
*
365526 TTGTATCAATACATAAGTG
1 TTGTATCGATACATAAGTG
365545 TTGTATCGATAC--AA---
1 TTGTATCGATACATAAGTG
365559 -TGTATCGATACATAAGTG
1 TTGTATCGATACATAAGTG
365577 TTGTATCGATACA
1 TTGTATCGATACA
365590 ATGTATCGCT
Statistics
Matches: 38, Mismatches: 1, Indels: 12
0.75 0.02 0.24
Matches are distributed among these distances:
13 11 0.29
15 2 0.05
17 2 0.05
19 23 0.61
ACGTcount: A:0.34, C:0.12, G:0.17, T:0.36
Consensus pattern (19 bp):
TTGTATCGATACATAAGTG
Found at i:365564 original size:13 final size:13
Alignment explanation
Indices: 365546--365570 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
365536 ACATAAGTGT
365546 TGTATCGATACAA
1 TGTATCGATACAA
365559 TGTATCGATACA
1 TGTATCGATACA
365571 TAAGTGTTGT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.36, C:0.16, G:0.16, T:0.32
Consensus pattern (13 bp):
TGTATCGATACAA
Found at i:365570 original size:32 final size:32
Alignment explanation
Indices: 365527--365597 Score: 133
Period size: 32 Copynumber: 2.2 Consensus size: 32
365517 TTCAGTGATT
*
365527 TGTATCAATACATAAGTGTTGTATCGATACAA
1 TGTATCGATACATAAGTGTTGTATCGATACAA
365559 TGTATCGATACATAAGTGTTGTATCGATACAA
1 TGTATCGATACATAAGTGTTGTATCGATACAA
365591 TGTATCG
1 TGTATCG
365598 CTAAAGCTAC
Statistics
Matches: 38, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
32 38 1.00
ACGTcount: A:0.34, C:0.13, G:0.18, T:0.35
Consensus pattern (32 bp):
TGTATCGATACATAAGTGTTGTATCGATACAA
Found at i:365715 original size:51 final size:53
Alignment explanation
Indices: 365652--365751 Score: 134
Period size: 51 Copynumber: 1.9 Consensus size: 53
365642 ATCGATACAT
* *
365652 TGTATCGATACATGGAT-CTTTGTATCGATACATTTAGG-AA-TTTGACCCAGA
1 TGTATCGATACAT-GATACTATGTATCGATACATTCAGGCAATTTTGACCCAGA
**
365703 TGTATCGATACATTTTACTATGTATCGATACATTCAGGCAATTTTGACC
1 TGTATCGATACATGATACTATGTATCGATACATTCAGGCAATTTTGACC
365752 ATTTCGAGCC
Statistics
Matches: 42, Mismatches: 4, Indels: 4
0.84 0.08 0.08
Matches are distributed among these distances:
50 1 0.02
51 32 0.76
52 2 0.05
53 7 0.17
ACGTcount: A:0.29, C:0.17, G:0.17, T:0.37
Consensus pattern (53 bp):
TGTATCGATACATGATACTATGTATCGATACATTCAGGCAATTTTGACCCAGA
Found at i:366225 original size:9 final size:10
Alignment explanation
Indices: 366195--366228 Score: 50
Period size: 10 Copynumber: 3.4 Consensus size: 10
366185 ATCCTTTAGC
*
366195 AACAAAAAAA
1 AACAAAGAAA
*
366205 AACCAAGAAA
1 AACAAAGAAA
366215 AACAAAGAAA
1 AACAAAGAAA
366225 AACA
1 AACA
366229 CTATTCCATT
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
10 21 1.00
ACGTcount: A:0.79, C:0.15, G:0.06, T:0.00
Consensus pattern (10 bp):
AACAAAGAAA
Found at i:368314 original size:52 final size:53
Alignment explanation
Indices: 368235--368334 Score: 141
Period size: 52 Copynumber: 1.9 Consensus size: 53
368225 GATTTCTCAC
* *
368235 AATCGGGGATACTCCAACCCCAGTTTTATTTTC-AAAACACCAATTTTCCTTT
1 AATCAGGGATACTCCAACCCCAGTTTTATTTCCAAAAACACCAATTTTCCTTT
* *
368287 AATCAGGGATACTCCAGCTCC-GATTTTATTTCCAAAAACACCAATTTT
1 AATCAGGGATACTCCAACCCCAG-TTTTATTTCCAAAAACACCAATTTT
368335 TTCACAATCG
Statistics
Matches: 42, Mismatches: 4, Indels: 3
0.86 0.08 0.06
Matches are distributed among these distances:
51 1 0.02
52 27 0.64
53 14 0.33
ACGTcount: A:0.31, C:0.26, G:0.10, T:0.33
Consensus pattern (53 bp):
AATCAGGGATACTCCAACCCCAGTTTTATTTCCAAAAACACCAATTTTCCTTT
Found at i:368350 original size:53 final size:53
Alignment explanation
Indices: 368189--368358 Score: 147
Period size: 51 Copynumber: 3.3 Consensus size: 53
368179 TGTTTCCGAA
* * * * ***
368189 AGGATACTCCAACCCCGGCTTCATTTCCAAAATATTGA-TTTC-TCACAATCG
1 AGGATACTCCAACCCCAGTTTTATTTCCAAAACACCAATTTTCTTCACAATCG
* * *
368240 GGGATACTCCAACCCCAGTTTTATTTTCAAAACACCAATTTTCCTT--TAATC-
1 AGGATACTCCAACCCCAGTTTTATTTCCAAAACACCAATTTT-CTTCACAATCG
* *
368291 AGGGATACTCCAGCTCC-GATTTTATTTCCAAAAACACCAATTTT-TTCACAATCG
1 A-GGATACTCCAACCCCAG-TTTTATTTCC-AAAACACCAATTTTCTTCACAATCG
368345 AGGATACTCCAACC
1 AGGATACTCCAACC
368359 TTGTTATTTC
Statistics
Matches: 93, Mismatches: 17, Indels: 16
0.74 0.13 0.13
Matches are distributed among these distances:
51 32 0.34
52 29 0.31
53 30 0.32
54 2 0.02
ACGTcount: A:0.31, C:0.28, G:0.11, T:0.31
Consensus pattern (53 bp):
AGGATACTCCAACCCCAGTTTTATTTCCAAAACACCAATTTTCTTCACAATCG
Found at i:368392 original size:28 final size:28
Alignment explanation
Indices: 368341--368417 Score: 82
Period size: 28 Copynumber: 2.8 Consensus size: 28
368331 TTTTTTCACA
* ** **
368341 ATCGAGGATACTCCAACCTTGTTATTTC
1 ATCGGGGATACTCCAACCCCGTTACCTC
368369 ATCGGGGATACTCCAACCCCGTTACCTC
1 ATCGGGGATACTCCAACCCCGTTACCTC
***
368397 CGAGGGGATACTCCAACCCCG
1 ATCGGGGATACTCCAACCCCG
368418 GCTTTATTCC
Statistics
Matches: 41, Mismatches: 8, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
28 41 1.00
ACGTcount: A:0.23, C:0.34, G:0.19, T:0.23
Consensus pattern (28 bp):
ATCGGGGATACTCCAACCCCGTTACCTC
Found at i:368457 original size:212 final size:203
Alignment explanation
Indices: 368023--368467 Score: 570
Period size: 212 Copynumber: 2.1 Consensus size: 203
368013 AGTTTCCCAA
* * * * * *
368023 TTCTCCACAATCGGGGATATTCC-ATCTCTGATTTTATTTTCAAAACACTAATTTTCTATAATCG
1 TTCT-CACAATCGGGGATACTCCAACCCCAG-TTTTATTTTCAAAACACCAATTTTCTATAATCA
* *
368087 GGGATACCCCAACTTCGATTTTATTTCCAAAAAAACACCAATTTTTCACAATCGGGGATACTCCA
64 GGGATACCCCAACTCCGATTTTATTTCC-AAAAAACACCAATTTTTCACAATCGAGGATACTCCA
*** *
368152 ACCCTGTTAATCATACTCCAACCCCGTTGTTTCCGAAAGGATACTCCAACCCCGGCTTCATTTCC
128 ACCCTGTTAATCATACTCCAACCCCGTTACCTCCGAAAGGATACTCCAACCCCGGCTTCATTCCC
368217 AAAATATTGAT
193 AAAATATTGAT
*
368228 TTCTCACAATCGGGGATACTCCAACCCCAGTTTTATTTTCAAAACACCAATTTTCCTTTAATCAG
1 TTCTCACAATCGGGGATACTCCAACCCCAGTTTTATTTTCAAAACACCAATTTT-CTATAATCAG
* *
368293 GGATACTCCAGCTCCGATTTTATTTCC-AAAAACACCAATTTTTTCACAATCGAGGATACTCCAA
65 GGATACCCCAACTCCGATTTTATTTCCAAAAAACACCAA-TTTTTCACAATCGAGGATACTCCAA
* **
368357 CCTTGTTATTTCATCGGGGATACTCCAACCCCGTTACCTCCGAGGGGATACTCCAACCCCGGCTT
129 CCCTGTTA----ATC----ATACTCCAACCCCGTTACCTCCGAAAGGATACTCCAACCCCGGCTT
*
368422 TATTCCCAAAATATTGAT
186 CATTCCCAAAATATTGAT
* *
368440 TTCTCATAATTGGGGATACTCCAACCCC
1 TTCTCACAATCGGGGATACTCCAACCCC
368468 GTTATTTCCG
Statistics
Matches: 208, Mismatches: 21, Indels: 15
0.85 0.09 0.06
Matches are distributed among these distances:
203 11 0.05
204 71 0.34
205 40 0.19
208 3 0.01
212 83 0.40
ACGTcount: A:0.29, C:0.28, G:0.12, T:0.31
Consensus pattern (203 bp):
TTCTCACAATCGGGGATACTCCAACCCCAGTTTTATTTTCAAAACACCAATTTTCTATAATCAGG
GATACCCCAACTCCGATTTTATTTCCAAAAAACACCAATTTTTCACAATCGAGGATACTCCAACC
CTGTTAATCATACTCCAACCCCGTTACCTCCGAAAGGATACTCCAACCCCGGCTTCATTCCCAAA
ATATTGAT
Found at i:368520 original size:79 final size:79
Alignment explanation
Indices: 368371--368575 Score: 218
Period size: 79 Copynumber: 2.6 Consensus size: 79
368361 GTTATTTCAT
** *
368371 CGGGGATACTCCAACCCCGTTACCTCCGAGGGGATACTCCAACCCCGGCTTTATTCCCAAAATAT
1 CGGGGATACTCCAACCCCGTTATTTCCGAGGGGATACTCCAACCCCGGCTTTATTACCAAAATAT
* * *
368436 TGATTTCTCATAAT
66 CGATTTCTCACAAC
* * * * *
368450 TGGGGATACTCCAACCCCGTTATTTCCGAGGGGATACTCTAATCCCGATG-TTT-TTATC-TAAT
1 CGGGGATACTCCAACCCCGTTATTTCCGAGGGGATACTCCAACCCCG--GCTTTATTACCAAAAT
368512 CATCGATTTCTCACAAC
64 -ATCGATTTCTCACAAC
* * * * *
368529 CGGGGATACTCCAGCCCCGTCATTTTCAAGGGGACACTCCAACCCCG
1 CGGGGATACTCCAACCCCGTTATTTCCGAGGGGATACTCCAACCCCG
368576 TTATTATCTC
Statistics
Matches: 104, Mismatches: 19, Indels: 6
0.81 0.15 0.05
Matches are distributed among these distances:
78 3 0.03
79 97 0.93
80 3 0.03
81 1 0.01
ACGTcount: A:0.24, C:0.31, G:0.18, T:0.27
Consensus pattern (79 bp):
CGGGGATACTCCAACCCCGTTATTTCCGAGGGGATACTCCAACCCCGGCTTTATTACCAAAATAT
CGATTTCTCACAAC
Found at i:371705 original size:21 final size:21
Alignment explanation
Indices: 371679--371728 Score: 66
Period size: 21 Copynumber: 2.4 Consensus size: 21
371669 TAATTGATAT
371679 ATTACTGTA-AAGTATCAATAC
1 ATTACTGTACAA-TATCAATAC
*
371700 ATTACTGTACAATATCGATAC
1 ATTACTGTACAATATCAATAC
*
371721 ATCACTGT
1 ATTACTGT
371729 TCATGTATCG
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
21 24 0.92
22 2 0.08
ACGTcount: A:0.38, C:0.18, G:0.10, T:0.34
Consensus pattern (21 bp):
ATTACTGTACAATATCAATAC
Found at i:373241 original size:25 final size:27
Alignment explanation
Indices: 373210--373267 Score: 73
Period size: 28 Copynumber: 2.1 Consensus size: 27
373200 AATTTTTGTA
** *
373210 TATTTTTTTTAAA-AATTTCTTATTAC
1 TATTTTTTGAAAACAATTTCTTATCAC
373236 TATTTTTTGAAAATCAATTTCTTATCAC
1 TATTTTTTGAAAA-CAATTTCTTATCAC
373264 TATT
1 TATT
373268 GTTATTCCTT
Statistics
Matches: 27, Mismatches: 3, Indels: 2
0.84 0.09 0.06
Matches are distributed among these distances:
26 11 0.41
28 16 0.59
ACGTcount: A:0.31, C:0.10, G:0.02, T:0.57
Consensus pattern (27 bp):
TATTTTTTGAAAACAATTTCTTATCAC
Found at i:373862 original size:79 final size:76
Alignment explanation
Indices: 373728--373937 Score: 232
Period size: 76 Copynumber: 2.8 Consensus size: 76
373718 TAAAATGACC
* * * **
373728 AATAAGAAAATGCCAACATGA-TCC-TA-A-TCAGATTTATCATAAAAATTATCAAAATGACCCA
1 AATATGAAAATGCCAACATGAGTCCAAAGACTTAGATTTATCATGGAAATTATCAAAATGACCCA
373789 AATGACTATGTATT
66 AATG---ATGTATT
* * * *
373803 GATATGAAAATGCCAACAT-AGGTCTAAATACTTAGATTTATCATGGAAATTATCTAAATGACCC
1 AATATGAAAATGCCAACATGA-GTCCAAAGACTTAGATTTATCATGGAAATTATCAAAATGACCC
*
373867 TAATGATGTATT
65 AAATGATGTATT
* * *
373879 AATATGAAAATGCCAACATGATTCCAAAGACTTAAATTTATTATGGAAATTATCAAAAT
1 AATATGAAAATGCCAACATGAGTCCAAAGACTTAGATTTATCATGGAAATTATCAAAAT
373938 AATTTTAATG
Statistics
Matches: 113, Mismatches: 16, Indels: 11
0.81 0.11 0.08
Matches are distributed among these distances:
74 1 0.01
75 17 0.15
76 59 0.52
77 2 0.02
78 1 0.01
79 33 0.29
ACGTcount: A:0.44, C:0.14, G:0.11, T:0.30
Consensus pattern (76 bp):
AATATGAAAATGCCAACATGAGTCCAAAGACTTAGATTTATCATGGAAATTATCAAAATGACCCA
AATGATGTATT
Found at i:374180 original size:48 final size:48
Alignment explanation
Indices: 374099--374198 Score: 130
Period size: 48 Copynumber: 2.1 Consensus size: 48
374089 TAAGTAGCCT
*
374099 TAAAATGAGGGAAATTGCTAAAAAGATCCTAGATTATATTAAATTACC
1 TAAAATGAGGGAAATTGCTAAAAAGATCCTAGATTATATTAAATAACC
** * * *
374147 TAAAATGATTGAATTTGCTAAAATGA-CCTTAGATTATGTTAAATAACC
1 TAAAATGAGGGAAATTGCTAAAAAGATCC-TAGATTATATTAAATAACC
374195 TAAA
1 TAAA
374199 TGGTCTTAAA
Statistics
Matches: 45, Mismatches: 6, Indels: 2
0.85 0.11 0.04
Matches are distributed among these distances:
47 2 0.04
48 43 0.96
ACGTcount: A:0.45, C:0.10, G:0.13, T:0.32
Consensus pattern (48 bp):
TAAAATGAGGGAAATTGCTAAAAAGATCCTAGATTATATTAAATAACC
Found at i:374238 original size:58 final size:58
Alignment explanation
Indices: 374147--374609 Score: 366
Period size: 58 Copynumber: 8.0 Consensus size: 58
374137 TTAAATTACC
* * * *
374147 TAAAATGATTG-AATTTGCTAAAATGACCTTAGATTATGTTAAATAACCTAAATGGTCT
1 TAAAATGA-TGAAAATTGCTAAAATGACCCTAGATTATGTAAAATAACCTAAATGGCCT
* * * *
374205 TAAAATGATAAAAATTGCTAAAATGACCCTAGATTATTTGAAATAACCTAAATGGCCC
1 TAAAATGATGAAAATTGCTAAAATGACCCTAGATTATGTAAAATAACCTAAATGGCCT
* * * * * **
374263 TAAAATAATGGAAATTGCTAAGATGACTCTAGATTATATAAAATAACCTAAATGTTCT
1 TAAAATGATGAAAATTGCTAAAATGACCCTAGATTATGTAAAATAACCTAAATGGCCT
* ** * * ** * * *
374321 TAAAACGATG-GGATTCGCTCAAA-GAACCTAGATTACATAAAATAAACTAAATGACCA
1 TAAAATGATGAAAATT-GCTAAAATGACCCTAGATTATGTAAAATAACCTAAATGGCCT
* * * * * * * * *
374378 CAAGAA-GACATGTAACTTG--GAGATGACCTTAGATTATGTCAGAT-ACCTAAATGGCAT
1 TAA-AATG--ATGAAAATTGCTAAAATGACCCTAGATTATGTAAAATAACCTAAATGGCCT
* * * * *
374435 CAAAATGATGAAAATTGCTAAAATGACCCTAGGTTATGTGAAATAACCCAAATAGCCT
1 TAAAATGATGAAAATTGCTAAAATGACCCTAGATTATGTAAAATAACCTAAATGGCCT
* * *
374493 TAAAATGATGAAAATTGCTAAGATGACCCTAGATTATGTAAAATAACCTAAATGTCCC
1 TAAAATGATGAAAATTGCTAAAATGACCCTAGATTATGTAAAATAACCTAAATGGCCT
* * * * * * * * *
374551 TAAAATAATAAAAACTGCT-AGATAACCCTATATTATATAAAATAACCTAGATGACCT
1 TAAAATGATGAAAATTGCTAAAATGACCCTAGATTATGTAAAATAACCTAAATGGCCT
374608 TA
1 TA
374610 GGAATGCACA
Statistics
Matches: 320, Mismatches: 74, Indels: 23
0.77 0.18 0.06
Matches are distributed among these distances:
55 8 0.03
56 2 0.01
57 102 0.32
58 202 0.63
59 4 0.01
60 2 0.01
ACGTcount: A:0.44, C:0.15, G:0.14, T:0.28
Consensus pattern (58 bp):
TAAAATGATGAAAATTGCTAAAATGACCCTAGATTATGTAAAATAACCTAAATGGCCT
Found at i:374248 original size:29 final size:29
Alignment explanation
Indices: 374216--374299 Score: 71
Period size: 29 Copynumber: 2.9 Consensus size: 29
374206 AAAATGATAA
*
374216 AAATTGCTAAAATGACCCTAGATTATTTG
1 AAATTGCTAAAATGACCCTAGATTATTGG
** * * * *
374245 AAATAACCT-AAATGGCCCTAAAATAATGG
1 AAAT-TGCTAAAATGACCCTAGATTATTGG
* *
374274 AAATTGCTAAGATGACTCTAGATTAT
1 AAATTGCTAAAATGACCCTAGATTAT
374300 ATAAAATAAC
Statistics
Matches: 38, Mismatches: 15, Indels: 4
0.67 0.26 0.07
Matches are distributed among these distances:
28 2 0.05
29 34 0.89
30 2 0.05
ACGTcount: A:0.42, C:0.14, G:0.14, T:0.30
Consensus pattern (29 bp):
AAATTGCTAAAATGACCCTAGATTATTGG
Found at i:374466 original size:115 final size:114
Alignment explanation
Indices: 374169--374606 Score: 327
Period size: 115 Copynumber: 3.8 Consensus size: 114
374159 ATTTGCTAAA
* *
374169 ATGACCTTAGATTATGTTAAATAACCTAAATGGTCTTAAAATGATAAAAATTGCTAAAATGACCC
1 ATGACCTTAGATTATGTAAAATAACCTAAATGG-CTTAAAATGATGAAAATTGCTAAAATGACCC
** * * * *
374234 TAGATTATTTGAAATAACCTAAATGGCCCTAAAATAATGGAAATTGCTAAG
65 TAGATTACATAAAATAAACTAAATGACCCTAAAAGAATGGAAATTGC-AAG
* * * ** * *
374285 ATGA-CTCTAGATTATATAAAATAACCTAAATGTTCTTAAAACGATG-GGATTCGCTCAAA-GAA
1 ATGACCT-TAGATTATGTAAAATAACCTAAATG-GCTTAAAATGATGAAAATT-GCTAAAATGAC
* * *
374347 CCTAGATTACATAAAATAAACTAAATGACCAC-AAGAAGACATGTAACTTG-GAG
63 CCTAGATTACATAAAATAAACTAAATGACC-CTAA-AAGA-ATGGAAATTGCAAG
* * *
374400 ATGACCTTAGATTATGTCAGAT-ACCTAAATGGCATCAAAATGATGAAAATTGCTAAAATGACCC
1 ATGACCTTAGATTATGTAAAATAACCTAAATGGC-TTAAAATGATGAAAATTGCTAAAATGACCC
* ** * * * * *
374464 TAGGTTATGTGAAATAACCCAAAT-AGCCTTAAAATG-ATGAAAATTGCTAAG
65 TAGATTACATAAAATAAACTAAATGA-CCCTAAAA-GAATGGAAATTGC-AAG
* * * * * * * *
374515 ATGACCCTAGATTATGTAAAATAACCTAAATGTCCCTAAAATAATAAAAACTGCT-AGATAACCC
1 ATGACCTTAGATTATGTAAAATAACCTAAATG-GCTTAAAATGATGAAAATTGCTAAAATGACCC
* * * *
374579 TATATTATATAAAATAACCTAGATGACC
65 TAGATTACATAAAATAAACTAAATGACC
374607 TTAGGAATGC
Statistics
Matches: 249, Mismatches: 55, Indels: 37
0.73 0.16 0.11
Matches are distributed among these distances:
113 9 0.04
114 27 0.11
115 130 0.52
116 74 0.30
117 9 0.04
ACGTcount: A:0.44, C:0.15, G:0.14, T:0.27
Consensus pattern (114 bp):
ATGACCTTAGATTATGTAAAATAACCTAAATGGCTTAAAATGATGAAAATTGCTAAAATGACCCT
AGATTACATAAAATAAACTAAATGACCCTAAAAGAATGGAAATTGCAAG
Found at i:374595 original size:230 final size:231
Alignment explanation
Indices: 374169--374606 Score: 578
Period size: 230 Copynumber: 1.9 Consensus size: 231
374159 ATTTGCTAAA
* *
374169 ATGACCTTAGATTATGTTAAATAACCTAAATGGTCTTAAAATGATAAAAATTGCTAAAATGACCC
1 ATGACCTTAGATTATGTCAAATAACCTAAATGGTCTCAAAATGATAAAAATTGCTAAAATGACCC
* * * * *
374234 TAGATTATTTGAAATAACCTAAATGGCCCTAAAATAATGGAAATTGCTAAGATGACTCTAGATTA
66 TAGATTATGTGAAATAACCCAAATAGCCCTAAAATAATGAAAATTGCTAAGATGACCCTAGATTA
* * * *** *
374299 TATAAAATAACCTAAATGTTCTTAAAACGATGGGATTCGCTCAAAGAACCTAGATTACATAAAAT
131 TATAAAATAACCTAAATGTCCCTAAAACAATAAAACTCGCTCAAAGAACCTAGATTACATAAAAT
374364 AAACTAAATGACCACAAGAAGACATGTAACTTGGAG
196 AAACTAAATGACCACAAGAAGACATGTAACTTGGAG
* *
374400 ATGACCTTAGATTATGTCAGAT-ACCTAAATGG-CATCAAAATGATGAAAATTGCTAAAATGACC
1 ATGACCTTAGATTATGTCAAATAACCTAAATGGTC-TCAAAATGATAAAAATTGCTAAAATGACC
* * *
374463 CTAGGTTATGTGAAATAACCCAAATAGCCTTAAAATGATGAAAATTGCTAAGATGACCCTAGATT
65 CTAGATTATGTGAAATAACCCAAATAGCCCTAAAATAATGAAAATTGCTAAGATGACCCTAGATT
* * * * * *
374528 ATGTAAAATAACCTAAATGTCCCTAAAATAATAAAAACT-GCT-AGATAACCCTATATTATATAA
130 ATATAAAATAACCTAAATGTCCCTAAAACAAT-AAAACTCGCTCAAAGAA-CCTAGATTACATAA
* *
374591 AATAACCTAGATGACC
193 AATAAACTAAATGACC
374607 TTAGGAATGC
Statistics
Matches: 177, Mismatches: 27, Indels: 7
0.84 0.13 0.03
Matches are distributed among these distances:
229 5 0.03
230 150 0.85
231 22 0.12
ACGTcount: A:0.44, C:0.15, G:0.14, T:0.27
Consensus pattern (231 bp):
ATGACCTTAGATTATGTCAAATAACCTAAATGGTCTCAAAATGATAAAAATTGCTAAAATGACCC
TAGATTATGTGAAATAACCCAAATAGCCCTAAAATAATGAAAATTGCTAAGATGACCCTAGATTA
TATAAAATAACCTAAATGTCCCTAAAACAATAAAACTCGCTCAAAGAACCTAGATTACATAAAAT
AAACTAAATGACCACAAGAAGACATGTAACTTGGAG
Found at i:382409 original size:20 final size:19
Alignment explanation
Indices: 382382--382456 Score: 87
Period size: 20 Copynumber: 3.8 Consensus size: 19
382372 AAAAAGGTAG
382382 AATGTATCGATACATTGAA
1 AATGTATCGATACATTGAA
* * *
382401 GAGTGTATCGATACTTTCATA
1 -AATGTATCGATACATTGA-A
*
382422 CATGTATCGATACATTGAAA
1 AATGTATCGATACATTG-AA
382442 AATGTATCGATACAT
1 AATGTATCGATACAT
382457 CTAGGTACTT
Statistics
Matches: 45, Mismatches: 8, Indels: 4
0.79 0.14 0.07
Matches are distributed among these distances:
20 43 0.96
21 2 0.04
ACGTcount: A:0.37, C:0.13, G:0.16, T:0.33
Consensus pattern (19 bp):
AATGTATCGATACATTGAA
Found at i:383483 original size:28 final size:29
Alignment explanation
Indices: 383364--383712 Score: 458
Period size: 29 Copynumber: 12.1 Consensus size: 29
383354 CATTAACTTC
* *
383364 TGTGGGCTTTGAAAAGAGTTGCCATTAACT
1 TGTGGGCTTTGAAAAGAG-TGCCACTGACT
* *
383394 CGTGTGGGCTTTGAAAAGAGTTACTACT-AGCT
1 --TGTGGGCTTTGAAAAGAG-TGCCACTGA-CT
*
383426 TGTGGGCTTTGAAAAGAGTGCCACTAACT
1 TGTGGGCTTTGAAAAGAGTGCCACTGACT
*
383455 TATGGGCTTTGAAAAG-GTGCCACTGACT
1 TGTGGGCTTTGAAAAGAGTGCCACTGACT
*
383483 TGTGGGCTTTG-AAAGGGTGCCACTGACT
1 TGTGGGCTTTGAAAAGAGTGCCACTGACT
* *
383511 TGTGGGCTTTGAAAGGA-TGCCACTTACT
1 TGTGGGCTTTGAAAAGAGTGCCACTGACT
*
383539 TGTGGGCTTT-AAAAGGGTGCCACTGACT
1 TGTGGGCTTTGAAAAGAGTGCCACTGACT
* *
383567 TGTGGGCTTTGAAAAGGGTTCCACTGACT
1 TGTGGGCTTTGAAAAGAGTGCCACTGACT
* * *
383596 TATGGGCTTTGAAAGGA-TGCCACTAACT
1 TGTGGGCTTTGAAAAGAGTGCCACTGACT
383624 TGTGGGCTTTGAAAAGAGTGCCACTGACT
1 TGTGGGCTTTGAAAAGAGTGCCACTGACT
*
383653 TGTGGGCTTTGAAAGGAGTGCCACTGACT
1 TGTGGGCTTTGAAAAGAGTGCCACTGACT
*
383682 TGTGGGCTCTGAAAAGAGTGCCACTGACT
1 TGTGGGCTTTGAAAAGAGTGCCACTGACT
383711 TG
1 TG
383713 CGGCCTTTCA
Statistics
Matches: 284, Mismatches: 26, Indels: 17
0.87 0.08 0.05
Matches are distributed among these distances:
27 8 0.03
28 108 0.38
29 123 0.43
30 19 0.07
31 1 0.00
32 25 0.09
ACGTcount: A:0.23, C:0.17, G:0.30, T:0.29
Consensus pattern (29 bp):
TGTGGGCTTTGAAAAGAGTGCCACTGACT
Found at i:383611 original size:57 final size:57
Alignment explanation
Indices: 383364--383712 Score: 452
Period size: 57 Copynumber: 6.0 Consensus size: 57
383354 CATTAACTTC
* * * * *
383364 TGTGGGCTTTGAAAAGAGTTGCCATTAACTCGTGTGGGCTTTGAAAAGAGTTACTACT-AGCT
1 TGTGGGCTTTG-AAAG-GGTGCCACTGACT--TGTGGGCTTTGAAAAGAG-TGCCACTGA-CT
* * *
383426 TGTGGGCTTTGAAAAGAGTGCCACTAACTTATGGGCTTTGAAAAG-GTGCCACTGACT
1 TGTGGGCTTTG-AAAGGGTGCCACTGACTTGTGGGCTTTGAAAAGAGTGCCACTGACT
* *
383483 TGTGGGCTTTGAAAGGGTGCCACTGACTTGTGGGCTTTGAAAGGA-TGCCACTTACT
1 TGTGGGCTTTGAAAGGGTGCCACTGACTTGTGGGCTTTGAAAAGAGTGCCACTGACT
* * *
383539 TGTGGGCTTTAAAAGGGTGCCACTGACTTGTGGGCTTTGAAAAGGGTTCCACTGACT
1 TGTGGGCTTTGAAAGGGTGCCACTGACTTGTGGGCTTTGAAAAGAGTGCCACTGACT
* * *
383596 TATGGGCTTTGAAAGGATGCCACTAACTTGTGGGCTTTGAAAAGAGTGCCACTGACT
1 TGTGGGCTTTGAAAGGGTGCCACTGACTTGTGGGCTTTGAAAAGAGTGCCACTGACT
*
383653 TGTGGGCTTTGAAAGGAGTGCCACTGACTTGTGGGCTCTGAAAAGAGTGCCACTGACT
1 TGTGGGCTTTGAAAGG-GTGCCACTGACTTGTGGGCTTTGAAAAGAGTGCCACTGACT
383711 TG
1 TG
383713 CGGCCTTTCA
Statistics
Matches: 257, Mismatches: 26, Indels: 12
0.87 0.09 0.04
Matches are distributed among these distances:
56 81 0.32
57 93 0.36
58 42 0.16
59 15 0.06
61 10 0.04
62 16 0.06
ACGTcount: A:0.23, C:0.17, G:0.30, T:0.29
Consensus pattern (57 bp):
TGTGGGCTTTGAAAGGGTGCCACTGACTTGTGGGCTTTGAAAAGAGTGCCACTGACT
Found at i:383762 original size:28 final size:28
Alignment explanation
Indices: 383722--383933 Score: 316
Period size: 28 Copynumber: 7.5 Consensus size: 28
383712 GCGGCCTTTC
* *
383722 ACTTGTGGGCTTTGAAAAGGTGCCACTA
1 ACTTGTGGGCTTTGAAAGGGTGCCACTG
*
383750 ACTTGTAGGCTTTGAAAGGAGTGCCACTG
1 ACTTGTGGGCTTTGAAAGG-GTGCCACTG
383779 ACTTGTGGGCTTTGAAAGGGTGCCACTG
1 ACTTGTGGGCTTTGAAAGGGTGCCACTG
* *
383807 ACTTGTAGGCTTTGAATGGAGTGCCACTG
1 ACTTGTGGGCTTTGAAAGG-GTGCCACTG
* * *
383836 ACTTGTGGGCATTGAAAGGGTGTCATTG
1 ACTTGTGGGCTTTGAAAGGGTGCCACTG
383864 ACTTGTGGGCTTTGAAAGGGTGCCACTG
1 ACTTGTGGGCTTTGAAAGGGTGCCACTG
383892 ACTTGTGGGCTTTGAAAGGAGTGCCACTG
1 ACTTGTGGGCTTTGAAAGG-GTGCCACTG
*
383921 ACTTGTGGCCTTT
1 ACTTGTGGGCTTT
383934 CACTTGTGGG
Statistics
Matches: 166, Mismatches: 15, Indels: 5
0.89 0.08 0.03
Matches are distributed among these distances:
28 94 0.57
29 72 0.43
ACGTcount: A:0.20, C:0.17, G:0.33, T:0.30
Consensus pattern (28 bp):
ACTTGTGGGCTTTGAAAGGGTGCCACTG
Found at i:383795 original size:100 final size:100
Alignment explanation
Indices: 383621--385206 Score: 492
Period size: 100 Copynumber: 15.9 Consensus size: 100
383611 GATGCCACTA
* *
383621 ACTTGTGGGCTTTGAAAAGAGTGCCACTGACTTGTGGGCTTTGAAAGGAGTGCCACTGACTTGTG
1 ACTTGTGGGCTTTGAAAAGAGTGCCACTAACTTGTAGGCTTTGAAAGGAGTGCCACTGACTTGTG
383686 GGCTCTGAAAAGAGTGCCACTGACTTGCGGCCTTTC
66 GGCTCTG-AAAGAGTGCCACTGACTTGCGGCCTTTC
383722 ACTTGTGGGCTTTGAAAAG-GTGCCACTAACTTGTAGGCTTTGAAAGGAGTGCCACTGACTTGTG
1 ACTTGTGGGCTTTGAAAAGAGTGCCACTAACTTGTAGGCTTTGAAAGGAGTGCCACTGACTTGTG
* *
383786 GGCTTTGAAAGGGTGCCACTGACTT---G----T-
66 GGCTCTGAAAGAGTGCCACTGACTTGCGGCCTTTC
** * * * * *
383813 A------GGCTTTGAATGGAGTGCCACTGACTTGTGGGCATTGAAAGG-GTGTCATTGACTTGTG
1 ACTTGTGGGCTTTGAAAAGAGTGCCACTAACTTGTAGGCTTTGAAAGGAGTGCCACTGACTTGTG
* * * * *
383871 GGCTTTGAAAGGGTGCCACTGACTTGTGGGCTTTG
66 GGCTCTGAAAGAGTGCCACTGACTTGCGGCCTTTC
*** * * ** *** ** * * * * *
383906 AAAGGAGTGCCACTG--ACTTGTGGCCTTTCACTTGTGGGCTTTGAAAAGAGTGCCACTAATTTG
1 ACTTGTG-GGCTTTGAAAAGAGT-GCCACTAACTTGTAGGCTTTGAAAGGAGTGCCACTGACTTG
* * * *
383969 TGGGCTTTGAAAGGGTGCCACTGACTTGTGGGCTTTGAAAGGGTGCCAC
64 TGGGCTCTGAAAGAGTGCCACTGACTTG-CGGCCTT-------T----C
* * * * *
384018 TGACTTGTGGGCTTTGAAAGGAGTGCCACTGATTTGTGGGCTTTGAAAGG-GTGCCACAGACTTG
1 --ACTTGTGGGCTTTGAAAAGAGTGCCACTAACTTGTAGGCTTTGAAAGGAGTGCCACTGACTTG
* * * *
384082 TAGGCTTTGAAAGGAGTGCCACTGACTTGTGGGCTTTGAAAGGGTGCCAC
64 TGGGCTCTGAAA-GAGTGCCACTGACTTG-CGGCCTT-------T----C
* ** * * * *
384132 TGACTTGTAGGCTTTGAATGGAGTGCCACTGACTTGTGGGCATTCAAAGG-GTGCCACTGACTTG
1 --ACTTGTGGGCTTTGAAAAGAGTGCCACTAACTTGTAGGCTTTGAAAGGAGTGCCACTGACTTG
* *
384196 TGGGCTTTGAAAGGAGTGCCACTGACTTGTGGCCTTTC
64 TGGGCTCTGAAA-GAGTGCCACTGACTTGCGGCCTTTC
* * *
384234 ACTTATGGGCTTTGAAAAG-GTGCCACTGACTTGTAGGCTTTGAAAGGAGTGCCACTGATTTGTG
1 ACTTGTGGGCTTTGAAAAGAGTGCCACTAACTTGTAGGCTTTGAAAGGAGTGCCACTGACTTGTG
* *
384298 GGCTTTGAAAGGGTGCCACTGACTT---G----T-
66 GGCTCTGAAAGAGTGCCACTGACTTGCGGCCTTTC
** * *
384325 A------GGCTTTGAAAGCAGTGCCACTGACTTGTGGGCTTTGAAAGG-GTGCCACTGACTTGTG
1 ACTTGTGGGCTTTGAAAAGAGTGCCACTAACTTGTAGGCTTTGAAAGGAGTGCCACTGACTTGTG
* * * *
384383 GGCTTTGAAAG-GATGCCACTTACTTGTGGGCTTTAAAAGGGTGCCAC
66 GGCTCTGAAAGAG-TGCCACTGACTTG-CGGCCTT-------T----C
* * * * * * *
384430 TGACTTGTGGGCTTTGAAAAGGGTTCCACTGACTTATGGGCTTTAAAAGGA-TGCCACTAACTTG
1 --ACTTGTGGGCTTTGAAAAGAGTGCCACTAACTTGTAGGCTTTGAAAGGAGTGCCACTGACTTG
*
384494 TGGGCTTTGAAAAGAGTG-C-C--AC-T---G------
64 TGGGCTCTG-AAAGAGTGCCACTGACTTGCGGCCTTTC
* * * * * * *
384518 ACTTGTGGGCTTTCAAAGGAGTGCCACTGACTTGTGGGCTCTGAAAAGAGTGCCACTGACTTGCG
1 ACTTGTGGGCTTTGAAAAGAGTGCCACTAACTTGTAGGCTTTGAAAGGAGTGCCACTGACTTGTG
* ** *** * ** *** ** *
384583 GCCT-TTCACTTGTGGGCTTTGAAAAG-GTGCCACTA
66 GGCTCTGAAAGAGT-GCCACTGACTTGCG-GCCTTTC
* ** * * *
384618 ACTTGTAGGCTTTGAAAGCAGTGCCACTGACTTGTGGGCTTTGAAAGG-GTGCCACTGACTTGTA
1 ACTTGTGGGCTTTGAAAAGAGTGCCACTAACTTGTAGGCTTTGAAAGGAGTGCCACTGACTTGTG
* * * *
384682 GGCTTTGAATGGAGTGCCACTGACTTGTGGGCATTGAAAGGGTGCTAC
66 GGCTCTGAA-AGAGTGCCACTGACTTG-CGGC-CT-------T--T-C
* * * * *
384730 TGACTTGTGGGCTTTGAAATG-GTGCCACTGACTTGTGGGCTTTGAAAGGA-TGCCATTAACTTG
1 --ACTTGTGGGCTTTGAAAAGAGTGCCACTAACTTGTAGGCTTTGAAAGGAGTGCCACTGACTTG
*
384793 TGGGCTTTGAAAAGAGTG--AC--AC-T---G------
64 TGGGCTCTG-AAAGAGTGCCACTGACTTGCGGCCTTTC
* * *
384817 ACTTGTGGGCTTTGAAAAGAGTGCCACTAATTTGT-GAGCTTTGAAAGG-GTACAACTGACTTGC
1 ACTTGTGGGCTTTGAAAAGAGTGCCACTAACTTGTAG-GCTTTGAAAGGAGTGCCACTGACTTG-
* * *
384880 ATGGGCTTTGAAAAGAGTGCCACTGACTTGTGGGCTTTGAAAGGGTGCCGC
64 -TGGGCTCTG-AAAGAGTGCCACTGACTTG-CGGCCTT-------T----C
* * * * *
384931 TGACTTGTCGGCTTTGAAATG-GTGCCACTGACTTGTGGGCTTTGAAAGG-GTGCCATTGACTTG
1 --ACTTGTGGGCTTTGAAAAGAGTGCCACTAACTTGTAGGCTTTGAAAGGAGTGCCACTGACTTG
* * **
384994 TGGGCTTTGAAAGGAGTGCCACTAACTTTTGGCCTTTC
64 TGGGCTCTGAAA-GAGTGCCACTGACTTGCGGCCTTTC
* * *
385032 ACTTGTGGGCTTTGAAAAG-GTGCCACTGACTTGTAGGCTTTGAAAGGAGTGCCATTGATTTGTG
1 ACTTGTGGGCTTTGAAAAGAGTGCCACTAACTTGTAGGCTTTGAAAGGAGTGCCACTGACTTGTG
* *
385096 GGCTTTGAAAGGGTGCCACTGACTT---G----T-
66 GGCTCTGAAAGAGTGCCACTGACTTGCGGCCTTTC
* * * * *
385123 A------GGCTTTGAAAGGAGTGCCACTGACTTGTGGGCTTTTAAAGG-GTGCCACTAACTTGTG
1 ACTTGTGGGCTTTGAAAAGAGTGCCACTAACTTGTAGGCTTTGAAAGGAGTGCCACTGACTTGTG
* *
385181 GGCTTTGAAAGGGTGCCACTGACTTG
66 GGCTCTGAAAGAGTGCCACTGACTTG
385207 TGGGCTTTGA
Statistics
Matches: 1183, Mismatches: 160, Indels: 299
0.72 0.10 0.18
Matches are distributed among these distances:
84 1 0.00
85 167 0.14
86 154 0.13
87 17 0.01
88 19 0.02
89 1 0.00
90 3 0.00
91 3 0.00
92 6 0.01
93 2 0.00
94 1 0.00
96 3 0.00
97 1 0.00
98 2 0.00
99 151 0.13
100 208 0.18
101 28 0.02
102 2 0.00
104 1 0.00
105 2 0.00
106 1 0.00
107 1 0.00
108 2 0.00
109 3 0.00
110 2 0.00
111 3 0.00
112 9 0.01
113 163 0.14
114 170 0.14
115 39 0.03
116 18 0.02
ACGTcount: A:0.21, C:0.18, G:0.31, T:0.30
Consensus pattern (100 bp):
ACTTGTGGGCTTTGAAAAGAGTGCCACTAACTTGTAGGCTTTGAAAGGAGTGCCACTGACTTGTG
GGCTCTGAAAGAGTGCCACTGACTTGCGGCCTTTC
Found at i:383877 original size:85 final size:86
Alignment explanation
Indices: 383722--383928 Score: 328
Period size: 85 Copynumber: 2.4 Consensus size: 86
383712 GCGGCCTTTC
* * * *
383722 ACTTGTGGGCTTTGAAAAG-GTGCCACTAACTTGTAGGCTTTGAAAGGAGTGCCACTGACTTGTG
1 ACTTGTGGGCTTTGAAAGGAGTGCCACTGACTTGTGGGCATTGAAAGGAGTGCCACTGACTTGTG
383786 GGCTTTGAAAGGGTGCCACTG
66 GGCTTTGAAAGGGTGCCACTG
* * * *
383807 ACTTGTAGGCTTTGAATGGAGTGCCACTGACTTGTGGGCATTGAAAGG-GTGTCATTGACTTGTG
1 ACTTGTGGGCTTTGAAAGGAGTGCCACTGACTTGTGGGCATTGAAAGGAGTGCCACTGACTTGTG
383871 GGCTTTGAAAGGGTGCCACTG
66 GGCTTTGAAAGGGTGCCACTG
383892 ACTTGTGGGCTTTGAAAGGAGTGCCACTGACTTGTGG
1 ACTTGTGGGCTTTGAAAGGAGTGCCACTGACTTGTGG
383929 CCTTTCACTT
Statistics
Matches: 111, Mismatches: 10, Indels: 2
0.90 0.08 0.02
Matches are distributed among these distances:
85 86 0.77
86 25 0.23
ACGTcount: A:0.21, C:0.16, G:0.33, T:0.29
Consensus pattern (86 bp):
ACTTGTGGGCTTTGAAAGGAGTGCCACTGACTTGTGGGCATTGAAAGGAGTGCCACTGACTTGTG
GGCTTTGAAAGGGTGCCACTG
Found at i:383928 original size:57 final size:57
Alignment explanation
Indices: 383722--383926 Score: 331
Period size: 57 Copynumber: 3.6 Consensus size: 57
383712 GCGGCCTTTC
* *
383722 ACTTGTGGGCTTTGAAAAGGTGCCACTAACTTGTAGGCTTTGAAAGGAGTGCCACTG
1 ACTTGTGGGCTTTGAAAGGGTGCCACTGACTTGTAGGCTTTGAAAGGAGTGCCACTG
*
383779 ACTTGTGGGCTTTGAAAGGGTGCCACTGACTTGTAGGCTTTGAATGGAGTGCCACTG
1 ACTTGTGGGCTTTGAAAGGGTGCCACTGACTTGTAGGCTTTGAAAGGAGTGCCACTG
* * * *
383836 ACTTGTGGGCATTGAAAGGGTGTCATTGACTTGTGGGCTTTGAAAGG-GTGCCACTG
1 ACTTGTGGGCTTTGAAAGGGTGCCACTGACTTGTAGGCTTTGAAAGGAGTGCCACTG
383892 ACTTGTGGGCTTTGAAAGGAGTGCCACTGACTTGT
1 ACTTGTGGGCTTTGAAAGG-GTGCCACTGACTTGT
383927 GGCCTTTCAC
Statistics
Matches: 136, Mismatches: 11, Indels: 2
0.91 0.07 0.01
Matches are distributed among these distances:
56 27 0.20
57 109 0.80
ACGTcount: A:0.21, C:0.17, G:0.33, T:0.30
Consensus pattern (57 bp):
ACTTGTGGGCTTTGAAAGGGTGCCACTGACTTGTAGGCTTTGAAAGGAGTGCCACTG
Found at i:383957 original size:43 final size:43
Alignment explanation
Indices: 383892--383976 Score: 134
Period size: 43 Copynumber: 2.0 Consensus size: 43
383882 GGTGCCACTG
* *
383892 ACTTGTGGGCTTTGAAAGGAGTGCCACTGACTTGTGGCCTTTC
1 ACTTGTGGGCTTTGAAAAGAGTGCCACTAACTTGTGGCCTTTC
* *
383935 ACTTGTGGGCTTTGAAAAGAGTGCCACTAATTTGTGGGCTTT
1 ACTTGTGGGCTTTGAAAAGAGTGCCACTAACTTGTGGCCTTT
383977 GAAAGGGTGC
Statistics
Matches: 38, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
43 38 1.00
ACGTcount: A:0.19, C:0.18, G:0.29, T:0.34
Consensus pattern (43 bp):
ACTTGTGGGCTTTGAAAAGAGTGCCACTAACTTGTGGCCTTTC
Found at i:383989 original size:71 final size:71
Alignment explanation
Indices: 383650--384004 Score: 233
Period size: 71 Copynumber: 5.0 Consensus size: 71
383640 AGTGCCACTG
* * * *
383650 ACTTGTGGGCTTTGAAAGGAGTGCCACTGACTTGTGGGCTCTGAAAAGAGTGCCACTGACTTGCG
1 ACTTGTGGGCTTTGAAA-GAGTGCCACTAACTTGTGGGCTTTGAAAGGAGTGCCACTGACTTGTG
383715 GCCTTTC
65 GCCTTTC
*
383722 ACTTGTGGGCTTTGAAA-AGGTGCCACTAACTTGTAGGCTTTGAAAGGAGTGCCACTGACTTGTG
1 ACTTGTGGGCTTTGAAAGA-GTGCCACTAACTTGTGGGCTTTGAAAGGAGTGCCACTGACTTGTG
* *
383786 GGCTTTG
65 GCCTTTC
** ** ** ** * * * ** *** * * *
383793 A-AAG-GGTGCCACTGACTTGTAG-G-CTTTGAA-TGGAGTGCCACTGACTTGTG-GGCATTGA-
1 ACTTGTGG-G-CTTTGA-AAG-AGTGCCACT-AACTTGTG-GGCTTTGAAAGGAGTGCCACTGAC
** * * * *
383851 AAGGGTGTCATTG
60 TTGTG-GCCTTTC
* *
383864 ACTTGTGGGCTTTGAAAGGGTGCCACTGACTTGTGGGCTTTGAAAGGAGTGCCACTGACTTGTGG
1 ACTTGTGGGCTTTGAAAGAGTGCCACTAACTTGTGGGCTTTGAAAGGAGTGCCACTGACTTGTGG
383929 CCTTTC
66 CCTTTC
*
383935 ACTTGTGGGCTTTGAAAAGAGTGCCACTAATTTGTGGGCTTTGAAAGG-GTGCCACTGACTTGTG
1 ACTTGTGGGCTTTG-AAAGAGTGCCACTAACTTGTGGGCTTTGAAAGGAGTGCCACTGACTTGTG
*
383999 GGCTTT
65 GCCTTT
384005 GAAAGGGTGC
Statistics
Matches: 203, Mismatches: 63, Indels: 35
0.67 0.21 0.12
Matches are distributed among these distances:
69 3 0.01
70 15 0.07
71 120 0.59
72 61 0.30
73 3 0.01
74 1 0.00
ACGTcount: A:0.20, C:0.18, G:0.32, T:0.30
Consensus pattern (71 bp):
ACTTGTGGGCTTTGAAAGAGTGCCACTAACTTGTGGGCTTTGAAAGGAGTGCCACTGACTTGTGG
CCTTTC
Found at i:383990 original size:28 final size:28
Alignment explanation
Indices: 383935--384232 Score: 452
Period size: 28 Copynumber: 10.5 Consensus size: 28
383925 GTGGCCTTTC
* *
383935 ACTTGTGGGCTTTGAAAAGAGTGCCACTA
1 ACTTGTGGGCTTTG-AAAGGGTGCCACTG
*
383964 ATTTGTGGGCTTTGAAAGGGTGCCACTG
1 ACTTGTGGGCTTTGAAAGGGTGCCACTG
383992 ACTTGTGGGCTTTGAAAGGGTGCCACTG
1 ACTTGTGGGCTTTGAAAGGGTGCCACTG
384020 ACTTGTGGGCTTTGAAAGGAGTGCCACTG
1 ACTTGTGGGCTTTGAAAGG-GTGCCACTG
* *
384049 ATTTGTGGGCTTTGAAAGGGTGCCACAG
1 ACTTGTGGGCTTTGAAAGGGTGCCACTG
*
384077 ACTTGTAGGCTTTGAAAGGAGTGCCACTG
1 ACTTGTGGGCTTTGAAAGG-GTGCCACTG
384106 ACTTGTGGGCTTTGAAAGGGTGCCACTG
1 ACTTGTGGGCTTTGAAAGGGTGCCACTG
* *
384134 ACTTGTAGGCTTTGAATGGAGTGCCACTG
1 ACTTGTGGGCTTTGAAAGG-GTGCCACTG
* *
384163 ACTTGTGGGCATTCAAAGGGTGCCACTG
1 ACTTGTGGGCTTTGAAAGGGTGCCACTG
384191 ACTTGTGGGCTTTGAAAGGAGTGCCACTG
1 ACTTGTGGGCTTTGAAAGG-GTGCCACTG
*
384220 ACTTGTGGCCTTT
1 ACTTGTGGGCTTT
384233 CACTTATGGG
Statistics
Matches: 246, Mismatches: 19, Indels: 8
0.90 0.07 0.03
Matches are distributed among these distances:
28 135 0.55
29 111 0.45
ACGTcount: A:0.20, C:0.17, G:0.33, T:0.29
Consensus pattern (28 bp):
ACTTGTGGGCTTTGAAAGGGTGCCACTG
Found at i:384044 original size:57 final size:57
Alignment explanation
Indices: 383935--384232 Score: 481
Period size: 57 Copynumber: 5.2 Consensus size: 57
383925 GTGGCCTTTC
* * *
383935 ACTTGTGGGCTTTGAAAAGAGTGCCACTAATTTGTGGGCTTTGAAAGG-GTGCCACTG
1 ACTTGTGGGCTTTG-AAAGGGTGCCACTGACTTGTGGGCTTTGAAAGGAGTGCCACTG
383992 ACTTGTGGGCTTTGAAAGGGTGCCACTGACTTGTGGGCTTTGAAAGGAGTGCCACTG
1 ACTTGTGGGCTTTGAAAGGGTGCCACTGACTTGTGGGCTTTGAAAGGAGTGCCACTG
* * *
384049 ATTTGTGGGCTTTGAAAGGGTGCCACAGACTTGTAGGCTTTGAAAGGAGTGCCACTG
1 ACTTGTGGGCTTTGAAAGGGTGCCACTGACTTGTGGGCTTTGAAAGGAGTGCCACTG
* *
384106 ACTTGTGGGCTTTGAAAGGGTGCCACTGACTTGTAGGCTTTGAATGGAGTGCCACTG
1 ACTTGTGGGCTTTGAAAGGGTGCCACTGACTTGTGGGCTTTGAAAGGAGTGCCACTG
* *
384163 ACTTGTGGGCATTCAAAGGGTGCCACTGACTTGTGGGCTTTGAAAGGAGTGCCACTG
1 ACTTGTGGGCTTTGAAAGGGTGCCACTGACTTGTGGGCTTTGAAAGGAGTGCCACTG
*
384220 ACTTGTGGCCTTT
1 ACTTGTGGGCTTT
384233 CACTTATGGG
Statistics
Matches: 225, Mismatches: 15, Indels: 2
0.93 0.06 0.01
Matches are distributed among these distances:
56 30 0.13
57 195 0.87
ACGTcount: A:0.20, C:0.17, G:0.33, T:0.29
Consensus pattern (57 bp):
ACTTGTGGGCTTTGAAAGGGTGCCACTGACTTGTGGGCTTTGAAAGGAGTGCCACTG
Found at i:384274 original size:28 final size:28
Alignment explanation
Indices: 384234--384580 Score: 450
Period size: 29 Copynumber: 12.2 Consensus size: 28
384224 GTGGCCTTTC
*
384234 ACTTATGGGCTTTGAAAAGGTGCCACTG
1 ACTTGTGGGCTTTGAAAAGGTGCCACTG
* *
384262 ACTTGTAGGCTTTGAAAGGAGTGCCACTG
1 ACTTGTGGGCTTTGAAAAG-GTGCCACTG
* *
384291 ATTTGTGGGCTTTGAAAGGGTGCCACTG
1 ACTTGTGGGCTTTGAAAAGGTGCCACTG
*
384319 ACTTGTAGGCTTTG-AAAGCAGTGCCACTG
1 ACTTGTGGGCTTTGAAAAG--GTGCCACTG
*
384348 ACTTGTGGGCTTTGAAAGGGTGCCACTG
1 ACTTGTGGGCTTTGAAAAGGTGCCACTG
*
384376 ACTTGTGGGCTTTG-AAAGGATGCCACTT
1 ACTTGTGGGCTTTGAAAAGG-TGCCACTG
384404 ACTTGTGGGCTTT-AAAAGGGTGCCACTG
1 ACTTGTGGGCTTTGAAAA-GGTGCCACTG
*
384432 ACTTGTGGGCTTTGAAAAGGGTTCCACTG
1 ACTTGTGGGCTTTGAAAA-GGTGCCACTG
* *
384461 ACTTATGGGCTTT-AAAAGGATGCCACTA
1 ACTTGTGGGCTTTGAAAAGG-TGCCACTG
384489 ACTTGTGGGCTTTGAAAAGAGTGCCACTG
1 ACTTGTGGGCTTTGAAAAG-GTGCCACTG
* *
384518 ACTTGTGGGCTTTCAAAGGAGTGCCACTG
1 ACTTGTGGGCTTTGAAAAG-GTGCCACTG
*
384547 ACTTGTGGGCTCTGAAAAGAGTGCCACTG
1 ACTTGTGGGCTTTGAAAAG-GTGCCACTG
384576 ACTTG
1 ACTTG
384581 CGGCCTTTCA
Statistics
Matches: 284, Mismatches: 24, Indels: 21
0.86 0.07 0.06
Matches are distributed among these distances:
27 9 0.03
28 125 0.44
29 146 0.51
30 4 0.01
ACGTcount: A:0.23, C:0.18, G:0.30, T:0.29
Consensus pattern (28 bp):
ACTTGTGGGCTTTGAAAAGGTGCCACTG
Found at i:384284 original size:71 final size:71
Alignment explanation
Indices: 384163--384303 Score: 219
Period size: 71 Copynumber: 2.0 Consensus size: 71
384153 AGTGCCACTG
* * *
384163 ACTTGTGGGCATTCAAAGGGTGCCACTGACTTGTGGGCTTTGAAAGGAGTGCCACTGACTTGTGG
1 ACTTATGGGCATTCAAAAGGTGCCACTGACTTGTAGGCTTTGAAAGGAGTGCCACTGACTTGTGG
384228 CCTTTC
66 CCTTTC
* * *
384234 ACTTATGGGCTTTGAAAAGGTGCCACTGACTTGTAGGCTTTGAAAGGAGTGCCACTGATTTGTGG
1 ACTTATGGGCATTCAAAAGGTGCCACTGACTTGTAGGCTTTGAAAGGAGTGCCACTGACTTGTGG
*
384299 GCTTT
66 CCTTT
384304 GAAAGGGTGC
Statistics
Matches: 63, Mismatches: 7, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
71 63 1.00
ACGTcount: A:0.20, C:0.18, G:0.30, T:0.31
Consensus pattern (71 bp):
ACTTATGGGCATTCAAAAGGTGCCACTGACTTGTAGGCTTTGAAAGGAGTGCCACTGACTTGTGG
CCTTTC
Found at i:384296 original size:29 final size:29
Alignment explanation
Indices: 384234--384580 Score: 492
Period size: 28 Copynumber: 12.2 Consensus size: 29
384224 GTGGCCTTTC
* *
384234 ACTTATGGGCTTTGAAAAG-GTGCCACTG
1 ACTTGTGGGCTTTGAAAGGAGTGCCACTG
*
384262 ACTTGTAGGCTTTGAAAGGAGTGCCACTG
1 ACTTGTGGGCTTTGAAAGGAGTGCCACTG
*
384291 ATTTGTGGGCTTTGAAAGG-GTGCCACTG
1 ACTTGTGGGCTTTGAAAGGAGTGCCACTG
* *
384319 ACTTGTAGGCTTTGAAAGCAGTGCCACTG
1 ACTTGTGGGCTTTGAAAGGAGTGCCACTG
384348 ACTTGTGGGCTTTGAAAGG-GTGCCACTG
1 ACTTGTGGGCTTTGAAAGGAGTGCCACTG
*
384376 ACTTGTGGGCTTTGAAAGGA-TGCCACTT
1 ACTTGTGGGCTTTGAAAGGAGTGCCACTG
*
384404 ACTTGTGGGCTTTAAAAGG-GTGCCACTG
1 ACTTGTGGGCTTTGAAAGGAGTGCCACTG
*
384432 ACTTGTGGGCTTTGAAAAGG-GTTCCACTG
1 ACTTGTGGGCTTTG-AAAGGAGTGCCACTG
* * *
384461 ACTTATGGGCTTTAAAAGGA-TGCCACTA
1 ACTTGTGGGCTTTGAAAGGAGTGCCACTG
*
384489 ACTTGTGGGCTTTGAAAAGAGTGCCACTG
1 ACTTGTGGGCTTTGAAAGGAGTGCCACTG
*
384518 ACTTGTGGGCTTTCAAAGGAGTGCCACTG
1 ACTTGTGGGCTTTGAAAGGAGTGCCACTG
* *
384547 ACTTGTGGGCTCTGAAAAGAGTGCCACTG
1 ACTTGTGGGCTTTGAAAGGAGTGCCACTG
384576 ACTTG
1 ACTTG
384581 CGGCCTTTCA
Statistics
Matches: 284, Mismatches: 28, Indels: 13
0.87 0.09 0.04
Matches are distributed among these distances:
28 142 0.50
29 142 0.50
ACGTcount: A:0.23, C:0.18, G:0.30, T:0.29
Consensus pattern (29 bp):
ACTTGTGGGCTTTGAAAGGAGTGCCACTG
Found at i:384327 original size:57 final size:57
Alignment explanation
Indices: 384234--384580 Score: 509
Period size: 57 Copynumber: 6.1 Consensus size: 57
384224 GTGGCCTTTC
* * *
384234 ACTTATGGGCTTTGAAAAGGTGCCACTGACTTGTAGGCTTTGAAAGGAGTGCCACTG
1 ACTTGTGGGCTTTGAAAGGGTGCCACTGACTTGTGGGCTTTGAAAGGAGTGCCACTG
* * *
384291 ATTTGTGGGCTTTGAAAGGGTGCCACTGACTTGTAGGCTTTGAAAGCAGTGCCACTG
1 ACTTGTGGGCTTTGAAAGGGTGCCACTGACTTGTGGGCTTTGAAAGGAGTGCCACTG
*
384348 ACTTGTGGGCTTTGAAAGGGTGCCACTGACTTGTGGGCTTTGAAAGGA-TGCCACTT
1 ACTTGTGGGCTTTGAAAGGGTGCCACTGACTTGTGGGCTTTGAAAGGAGTGCCACTG
* *
384404 ACTTGTGGGCTTTAAAAGGGTGCCACTGACTTGTGGGCTTTGAAAAGG-GTTCCACTG
1 ACTTGTGGGCTTTGAAAGGGTGCCACTGACTTGTGGGCTTTG-AAAGGAGTGCCACTG
* * * * *
384461 ACTTATGGGCTTTAAAAGGATGCCACTAACTTGTGGGCTTTGAAAAGAGTGCCACTG
1 ACTTGTGGGCTTTGAAAGGGTGCCACTGACTTGTGGGCTTTGAAAGGAGTGCCACTG
* * *
384518 ACTTGTGGGCTTTCAAAGGAGTGCCACTGACTTGTGGGCTCTGAAAAGAGTGCCACTG
1 ACTTGTGGGCTTTGAAAGG-GTGCCACTGACTTGTGGGCTTTGAAAGGAGTGCCACTG
384576 ACTTG
1 ACTTG
384581 CGGCCTTTCA
Statistics
Matches: 265, Mismatches: 21, Indels: 7
0.90 0.07 0.02
Matches are distributed among these distances:
56 52 0.20
57 173 0.65
58 40 0.15
ACGTcount: A:0.23, C:0.18, G:0.30, T:0.29
Consensus pattern (57 bp):
ACTTGTGGGCTTTGAAAGGGTGCCACTGACTTGTGGGCTTTGAAAGGAGTGCCACTG
Found at i:384630 original size:28 final size:28
Alignment explanation
Indices: 384590--385030 Score: 558
Period size: 28 Copynumber: 15.5 Consensus size: 28
384580 GCGGCCTTTC
* *
384590 ACTTGTGGGCTTTGAAAAGGTGCCACTA
1 ACTTGTGGGCTTTGAAAGGGTGCCACTG
* *
384618 ACTTGTAGGCTTTGAAAGCAGTGCCACTG
1 ACTTGTGGGCTTTGAAAG-GGTGCCACTG
384647 ACTTGTGGGCTTTGAAAGGGTGCCACTG
1 ACTTGTGGGCTTTGAAAGGGTGCCACTG
* *
384675 ACTTGTAGGCTTTGAATGGAGTGCCACTG
1 ACTTGTGGGCTTTGAAAGG-GTGCCACTG
* *
384704 ACTTGTGGGCATTGAAAGGGTGCTACTG
1 ACTTGTGGGCTTTGAAAGGGTGCCACTG
*
384732 ACTTGTGGGCTTTGAAATGGTGCCACTG
1 ACTTGTGGGCTTTGAAAGGGTGCCACTG
* * *
384760 ACTTGTGGGCTTTGAAAGGATGCCATTA
1 ACTTGTGGGCTTTGAAAGGGTGCCACTG
* *
384788 ACTTGTGGGCTTTGAAAAGAGTGACACTG
1 ACTTGTGGGCTTTG-AAAGGGTGCCACTG
* *
384817 ACTTGTGGGCTTTGAAAAGAGTGCCACTA
1 ACTTGTGGGCTTTG-AAAGGGTGCCACTG
* * * *
384846 ATTTGTGAGCTTTGAAAGGGTACAACTG
1 ACTTGTGGGCTTTGAAAGGGTGCCACTG
*
384874 ACTTGCATGGGCTTTGAAAAGAGTGCCACTG
1 ACTTG--TGGGCTTTG-AAAGGGTGCCACTG
*
384905 ACTTGTGGGCTTTGAAAGGGTGCCGCTG
1 ACTTGTGGGCTTTGAAAGGGTGCCACTG
* *
384933 ACTTGTCGGCTTTGAAATGGTGCCACTG
1 ACTTGTGGGCTTTGAAAGGGTGCCACTG
*
384961 ACTTGTGGGCTTTGAAAGGGTGCCATTG
1 ACTTGTGGGCTTTGAAAGGGTGCCACTG
*
384989 ACTTGTGGGCTTTGAAAGGAGTGCCACTA
1 ACTTGTGGGCTTTGAAAGG-GTGCCACTG
* *
385018 ACTTTTGGCCTTT
1 ACTTGTGGGCTTT
385031 CACTTGTGGG
Statistics
Matches: 357, Mismatches: 49, Indels: 13
0.85 0.12 0.03
Matches are distributed among these distances:
28 208 0.58
29 125 0.35
30 8 0.02
31 16 0.04
ACGTcount: A:0.22, C:0.17, G:0.31, T:0.30
Consensus pattern (28 bp):
ACTTGTGGGCTTTGAAAGGGTGCCACTG
Found at i:384641 original size:71 final size:72
Alignment explanation
Indices: 384518--384651 Score: 200
Period size: 71 Copynumber: 1.9 Consensus size: 72
384508 AGTGCCACTG
* * *
384518 ACTTGTGGGCTTTCAAAGGAGTGCCACTGACTTGTGGGCTCTGAAAAGAGTGCCACTGACTTGCG
1 ACTTGTGGGCTTTCAAAAGAGTGCCACTAACTTGTAGGCTCTGAAAAGAGTGCCACTGACTTGCG
384583 GCCTTTC
66 GCCTTTC
* *
384590 ACTTGTGGGCTTTGAAAAG-GTGCCACTAACTTGTAGGCTTTG-AAAGCAGTGCCACTGACTTG
1 ACTTGTGGGCTTTCAAAAGAGTGCCACTAACTTGTAGGCTCTGAAAAG-AGTGCCACTGACTTG
384652 TGGGCTTTGA
Statistics
Matches: 56, Mismatches: 5, Indels: 3
0.88 0.08 0.05
Matches are distributed among these distances:
70 4 0.07
71 35 0.62
72 17 0.30
ACGTcount: A:0.22, C:0.22, G:0.28, T:0.28
Consensus pattern (72 bp):
ACTTGTGGGCTTTCAAAAGAGTGCCACTAACTTGTAGGCTCTGAAAAGAGTGCCACTGACTTGCG
GCCTTTC
Found at i:384679 original size:57 final size:56
Alignment explanation
Indices: 384590--385786 Score: 967
Period size: 57 Copynumber: 21.3 Consensus size: 56
384580 GCGGCCTTTC
* *
384590 ACTTGTGGGCTTTGAAAAGGTGCCACTAACTTGTAGGCTTTGAAAGCAGTGCCACTG
1 ACTTGTGGGCTTTGAAAGGGTGCCACTAACTTGTGGGCTTTGAAAG-AGTGCCACTG
* * *
384647 ACTTGTGGGCTTTGAAAGGGTGCCACTGACTTGTAGGCTTTGAATGGAGTGCCACTG
1 ACTTGTGGGCTTTGAAAGGGTGCCACTAACTTGTGGGCTTTGAA-AGAGTGCCACTG
* * *
384704 ACTTGTGGGCATTGAAAGGGTGCTACTGACTTGTGGGCTTTGAAATG-GTGCCACTG
1 ACTTGTGGGCTTTGAAAGGGTGCCACTAACTTGTGGGCTTTGAAA-GAGTGCCACTG
* * *
384760 ACTTGTGGGCTTTGAAAGGATGCCATTAACTTGTGGGCTTTGAAAAGAGTGACACTG
1 ACTTGTGGGCTTTGAAAGGGTGCCACTAACTTGTGGGCTTTG-AAAGAGTGCCACTG
* * * * * *
384817 ACTTGTGGGCTTTGAAAAGAGTGCCACTAATTTGTGAGCTTTGAAAGGGTACAACTG
1 ACTTGTGGGCTTTG-AAAGGGTGCCACTAACTTGTGGGCTTTGAAAGAGTGCCACTG
* * * *
384874 ACTTGCATGGGCTTTGAAAAGAGTGCCACTGACTTGTGGGCTTTGAAAGGGTGCCGCTG
1 ACTTG--TGGGCTTTG-AAAGGGTGCCACTAACTTGTGGGCTTTGAAAGAGTGCCACTG
* * * * *
384933 ACTTGTCGGCTTTGAAATGGTGCCACTGACTTGTGGGCTTTGAAAGGGTGCCATTG
1 ACTTGTGGGCTTTGAAAGGGTGCCACTAACTTGTGGGCTTTGAAAGAGTGCCACTG
* * * *** * **
384989 ACTTGTGGGCTTTGAAAGGAGTGCCACTAACTTTTGGCCTTT-CACTTGTGGGCTTTG
1 ACTTGTGGGCTTTGAAAGG-GTGCCACTAACTTGTGGGCTTTGAAAGAGT-GCCACTG
*** ** * * *** *** * * *** **
385046 AAAAGGTGCCACTGACTTG-TAGGCTTTGA--AAGGAGT-GCCATTG-ATTTGTG-GGCT-
1 -ACTTGTG-GGCT---TTGAAAGGGTGCCACTAACTTGTGGGCTTTGAAAGAGTGCCACTG
* ** * * ** ** *
385100 --TTGAAAGGG---TGCCA--CTG--ACT---TGT-AGGCTTTGAAAGGAGTGCCACTG
1 ACTTG--TGGGCTTTGAAAGGGTGCCACTAACT-TGTGGGCTTTGAAAGAGTGCCACTG
* *
385146 ACTTGTGGGCTTTTAAAGGGTGCCACTAACTTGTGGGCTTTGAAAGGGTGCCACTG
1 ACTTGTGGGCTTTGAAAGGGTGCCACTAACTTGTGGGCTTTGAAAGAGTGCCACTG
* *
385202 ACTTGTGGGCTTTGAAATGGTGCCACTGACTTGTGGGCTTTGAAATG-GTGCCACTG
1 ACTTGTGGGCTTTGAAAGGGTGCCACTAACTTGTGGGCTTTGAAA-GAGTGCCACTG
* * *
385258 ACTTGTGGGCTTTGAAAGGATGCCATTAACTTGTGGGCTTTGAAAAGAGTGCCACTA
1 ACTTGTGGGCTTTGAAAGGGTGCCACTAACTTGTGGGCTTTG-AAAGAGTGCCACTG
*
385315 ACTTGTGGGCTTTGAAAGGGTGCCACTAACTTATGGGCTTTGAAAAGAGTGCCACTG
1 ACTTGTGGGCTTTGAAAGGGTGCCACTAACTTGTGGGCTTTG-AAAGAGTGCCACTG
* * * * *
385372 ATTTGTGAGCTTTGAAAGGGTGCTACTGACTTGCATGGGCTTTGAAAAGAGTGCCCCTG
1 ACTTGTGGGCTTTGAAAGGGTGCCACTAACTTG--TGGGCTTTG-AAAGAGTGCCACTG
** *
385431 ACTTGTGGGCTTTGAAAGGGTGCTGCTGACTTGTGGGCTTTGAAATG-GTGCCACTG
1 ACTTGTGGGCTTTGAAAGGGTGCCACTAACTTGTGGGCTTTGAAA-GAGTGCCACTG
* * * *
385487 ACTTGTGGGCTTTGAAA--GTGCCACTGACTTATGGGCTTTGAAAGGGTGCCACTA
1 ACTTGTGGGCTTTGAAAGGGTGCCACTAACTTGTGGGCTTTGAAAGAGTGCCACTG
* * * * *
385541 ACTTGTGGGCTTTGAAAAGAGTGCCAC-GATTTGTGAGCTTTGAAAGGGTGCCACTG
1 ACTTGTGGGCTTTG-AAAGGGTGCCACTAACTTGTGGGCTTTGAAAGAGTGCCACTG
* * * *
385597 ACTTGCATGGGCTTTGAAAAGAGTGCCACTGACTTGTGGGCTTTGAAAGGGTGCCGCTG
1 ACTTG--TGGGCTTTG-AAAGGGTGCCACTAACTTGTGGGCTTTGAAAGAGTGCCACTG
* * * *
385656 ACTCGTGGGCTTTGAAAGGAGTGCCACTGACTTGTGGGCTTTGAAAGGGTGCCATTG
1 ACTTGTGGGCTTTGAAAGG-GTGCCACTAACTTGTGGGCTTTGAAAGAGTGCCACTG
* * *
385713 AGTTGTGGGCTTTGAAAAGAGTTGCCACTGACTCT-TGGGCTTTGAAAG-GATGCCACTG
1 ACTTGTGGGCTTTG-AAAG-GGTGCCACTAACT-TGTGGGCTTTGAAAGAG-TGCCACTG
*
385771 ACTTATGGGCTTTGAA
1 ACTTGTGGGCTTTGAA
385787 GAGATGAACA
Statistics
Matches: 947, Mismatches: 137, Indels: 112
0.79 0.11 0.09
Matches are distributed among these distances:
43 4 0.00
44 4 0.00
45 4 0.00
46 5 0.01
47 1 0.00
48 3 0.00
49 2 0.00
51 3 0.00
53 5 0.01
54 45 0.05
55 5 0.01
56 275 0.29
57 345 0.36
58 100 0.11
59 138 0.15
60 2 0.00
61 3 0.00
62 3 0.00
ACGTcount: A:0.22, C:0.17, G:0.31, T:0.30
Consensus pattern (56 bp):
ACTTGTGGGCTTTGAAAGGGTGCCACTAACTTGTGGGCTTTGAAAGAGTGCCACTG
Found at i:385792 original size:28 final size:28
Alignment explanation
Indices: 385032--385786 Score: 1005
Period size: 28 Copynumber: 26.6 Consensus size: 28
385022 TTGGCCTTTC
*
385032 ACTTGTGGGCTTTGAAAAGGTGCCACTG
1 ACTTGTGGGCTTTGAAAGGGTGCCACTG
* *
385060 ACTTGTAGGCTTTGAAAGGAGTGCCATTG
1 ACTTGTGGGCTTTGAAAGG-GTGCCACTG
*
385089 ATTTGTGGGCTTTGAAAGGGTGCCACTG
1 ACTTGTGGGCTTTGAAAGGGTGCCACTG
*
385117 ACTTGTAGGCTTTGAAAGGAGTGCCACTG
1 ACTTGTGGGCTTTGAAAGG-GTGCCACTG
* *
385146 ACTTGTGGGCTTTTAAAGGGTGCCACTA
1 ACTTGTGGGCTTTGAAAGGGTGCCACTG
385174 ACTTGTGGGCTTTGAAAGGGTGCCACTG
1 ACTTGTGGGCTTTGAAAGGGTGCCACTG
*
385202 ACTTGTGGGCTTTGAAATGGTGCCACTG
1 ACTTGTGGGCTTTGAAAGGGTGCCACTG
*
385230 ACTTGTGGGCTTTGAAATGGTGCCACTG
1 ACTTGTGGGCTTTGAAAGGGTGCCACTG
* * *
385258 ACTTGTGGGCTTTGAAAGGATGCCATTA
1 ACTTGTGGGCTTTGAAAGGGTGCCACTG
* *
385286 ACTTGTGGGCTTTGAAAAGAGTGCCACTA
1 ACTTGTGGGCTTTG-AAAGGGTGCCACTG
*
385315 ACTTGTGGGCTTTGAAAGGGTGCCACTA
1 ACTTGTGGGCTTTGAAAGGGTGCCACTG
* *
385343 ACTTATGGGCTTTGAAAAGAGTGCCACTG
1 ACTTGTGGGCTTTG-AAAGGGTGCCACTG
* * *
385372 ATTTGTGAGCTTTGAAAGGGTGCTACTG
1 ACTTGTGGGCTTTGAAAGGGTGCCACTG
* *
385400 ACTTGCATGGGCTTTGAAAAGAGTGCCCCTG
1 ACTTG--TGGGCTTTG-AAAGGGTGCCACTG
**
385431 ACTTGTGGGCTTTGAAAGGGTGCTGCTG
1 ACTTGTGGGCTTTGAAAGGGTGCCACTG
*
385459 ACTTGTGGGCTTTGAAATGGTGCCACTG
1 ACTTGTGGGCTTTGAAAGGGTGCCACTG
385487 ACTTGTGGGCTTTGAAA--GTGCCACTG
1 ACTTGTGGGCTTTGAAAGGGTGCCACTG
* *
385513 ACTTATGGGCTTTGAAAGGGTGCCACTA
1 ACTTGTGGGCTTTGAAAGGGTGCCACTG
*
385541 ACTTGTGGGCTTTGAAAAGAGTGCCAC-G
1 ACTTGTGGGCTTTG-AAAGGGTGCCACTG
* *
385569 ATTTGTGAGCTTTGAAAGGGTGCCACTG
1 ACTTGTGGGCTTTGAAAGGGTGCCACTG
*
385597 ACTTGCATGGGCTTTGAAAAGAGTGCCACTG
1 ACTTG--TGGGCTTTG-AAAGGGTGCCACTG
*
385628 ACTTGTGGGCTTTGAAAGGGTGCCGCTG
1 ACTTGTGGGCTTTGAAAGGGTGCCACTG
*
385656 ACTCGTGGGCTTTGAAAGGAGTGCCACTG
1 ACTTGTGGGCTTTGAAAGG-GTGCCACTG
*
385685 ACTTGTGGGCTTTGAAAGGGTGCCATTG
1 ACTTGTGGGCTTTGAAAGGGTGCCACTG
* *
385713 AGTTGTGGGCTTTGAAAAGAGTTGCCACTG
1 ACTTGTGGGCTTTG-AAAG-GGTGCCACTG
*
385743 ACTCT-TGGGCTTTGAAAGGATGCCACTG
1 ACT-TGTGGGCTTTGAAAGGGTGCCACTG
*
385771 ACTTATGGGCTTTGAA
1 ACTTGTGGGCTTTGAA
385787 GAGATGAACA
Statistics
Matches: 645, Mismatches: 63, Indels: 38
0.86 0.08 0.05
Matches are distributed among these distances:
26 25 0.04
27 12 0.02
28 376 0.58
29 162 0.25
30 35 0.05
31 35 0.05
ACGTcount: A:0.21, C:0.17, G:0.32, T:0.30
Consensus pattern (28 bp):
ACTTGTGGGCTTTGAAAGGGTGCCACTG
Found at i:387034 original size:8 final size:8
Alignment explanation
Indices: 386997--387060 Score: 58
Period size: 8 Copynumber: 7.9 Consensus size: 8
386987 CCCTTTTCTA
386997 TTTTTTTG
1 TTTTTTTG
*
387005 TTATTTT-
1 TTTTTTTG
* *
387012 TTTCTTGG
1 TTTTTTTG
387020 CTTTTTTTG
1 -TTTTTTTG
387029 TTTTTTTTG
1 -TTTTTTTG
*
387038 TTTTTTTA
1 TTTTTTTG
*
387046 TTTTTTTA
1 TTTTTTTG
387054 TTTTTTT
1 TTTTTTT
387061 TGTGCAAAGG
Statistics
Matches: 46, Mismatches: 8, Indels: 4
0.79 0.14 0.07
Matches are distributed among these distances:
7 4 0.09
8 28 0.61
9 14 0.30
ACGTcount: A:0.05, C:0.03, G:0.08, T:0.84
Consensus pattern (8 bp):
TTTTTTTG
Found at i:387035 original size:9 final size:9
Alignment explanation
Indices: 387021--387063 Score: 54
Period size: 9 Copynumber: 5.0 Consensus size: 9
387011 TTTTCTTGGC
387021 TTTTTTTGT
1 TTTTTTTGT
387030 TTTTTTTG-
1 TTTTTTTGT
*
387038 TTTTTTT-A
1 TTTTTTTGT
*
387046 TTTTTTTAT
1 TTTTTTTGT
387055 TTTTTTTGT
1 TTTTTTTGT
387064 GCAAAGGACG
Statistics
Matches: 30, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
8 14 0.47
9 16 0.53
ACGTcount: A:0.05, C:0.00, G:0.07, T:0.88
Consensus pattern (9 bp):
TTTTTTTGT
Found at i:397944 original size:15 final size:15
Alignment explanation
Indices: 397924--397954 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
397914 TAAAAATGTC
*
397924 CAAAATGAGGAAGCT
1 CAAAATGAAGAAGCT
397939 CAAAATGAAGAAGCT
1 CAAAATGAAGAAGCT
397954 C
1 C
397955 CAAACGAAAT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.48, C:0.16, G:0.23, T:0.13
Consensus pattern (15 bp):
CAAAATGAAGAAGCT
Found at i:400037 original size:13 final size:13
Alignment explanation
Indices: 400019--400056 Score: 58
Period size: 13 Copynumber: 2.9 Consensus size: 13
400009 CATTTTTCTT
400019 TGTATCGATACAA
1 TGTATCGATACAA
*
400032 TGTATCGATACAC
1 TGTATCGATACAA
*
400045 TATATCGATACA
1 TGTATCGATACA
400057 GGGTGATTAT
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
13 23 1.00
ACGTcount: A:0.37, C:0.18, G:0.13, T:0.32
Consensus pattern (13 bp):
TGTATCGATACAA
Found at i:402627 original size:13 final size:13
Alignment explanation
Indices: 402609--402634 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
402599 TACACCAAGT
402609 ATGTATCGATACA
1 ATGTATCGATACA
402622 ATGTATCGATACA
1 ATGTATCGATACA
402635 CAAAAAATTG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.38, C:0.15, G:0.15, T:0.31
Consensus pattern (13 bp):
ATGTATCGATACA
Found at i:402632 original size:32 final size:33
Alignment explanation
Indices: 402591--402654 Score: 94
Period size: 32 Copynumber: 2.0 Consensus size: 33
402581 TAGCCAAACT
* **
402591 TGTATCGATACACCAAGTA-TGTATCGATACAA
1 TGTATCGATACACAAAAAATTGTATCGATACAA
402623 TGTATCGATACACAAAAAATTGTATCGATACA
1 TGTATCGATACACAAAAAATTGTATCGATACA
402655 TTGGCTTGTA
Statistics
Matches: 28, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
32 16 0.57
33 12 0.43
ACGTcount: A:0.41, C:0.17, G:0.14, T:0.28
Consensus pattern (33 bp):
TGTATCGATACACAAAAAATTGTATCGATACAA
Found at i:408612 original size:20 final size:19
Alignment explanation
Indices: 408587--408660 Score: 103
Period size: 20 Copynumber: 3.7 Consensus size: 19
408577 TTTGCCCAGA
408587 TGTATCGATACATTTTGCAT
1 TGTATCGATACATTTT-CAT
*
408607 TGTATCGATACATTGCTCAT
1 TGTATCGATACATT-TTCAT
*
408627 TGTATCGATACATTTTACAA
1 TGTATCGATACATTTT-CAT
408647 TGTATCGATACATT
1 TGTATCGATACATT
408661 CAGGCATTTT
Statistics
Matches: 49, Mismatches: 3, Indels: 4
0.88 0.05 0.07
Matches are distributed among these distances:
19 1 0.02
20 47 0.96
21 1 0.02
ACGTcount: A:0.28, C:0.16, G:0.14, T:0.42
Consensus pattern (19 bp):
TGTATCGATACATTTTCAT
Found at i:409509 original size:17 final size:17
Alignment explanation
Indices: 409487--409527 Score: 73
Period size: 17 Copynumber: 2.4 Consensus size: 17
409477 ATGCATTCTT
409487 GTGGTTTTTGTTTTGTG
1 GTGGTTTTTGTTTTGTG
409504 GTGGTTTTTGTTTTGTG
1 GTGGTTTTTGTTTTGTG
*
409521 GTAGTTT
1 GTGGTTT
409528 AGGACTTTTT
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
17 23 1.00
ACGTcount: A:0.02, C:0.00, G:0.34, T:0.63
Consensus pattern (17 bp):
GTGGTTTTTGTTTTGTG
Found at i:411046 original size:51 final size:51
Alignment explanation
Indices: 410964--411142 Score: 209
Period size: 51 Copynumber: 3.5 Consensus size: 51
410954 AAATTTGTAG
* * * *
410964 ATTTTTCAT-CTCGGGGATACTCGAA-TCCCGATTTCATTTCCAAAAAATCA
1 ATTTTTCATAATCGGGGATACTCCAACT-CCGATTTTATTTCCAAAACATCA
* * * *
411014 ATTTTTCTTAATCGGGGATACTCCAACTCCGATTTTATTTCTAAAACACCC
1 ATTTTTCATAATCGGGGATACTCCAACTCCGATTTTATTTCCAAAACATCA
* *** * *
411065 ATTTTCCATAATCGAAAATACTCCAACTCTGATTTTATTTTCAAAACATCA
1 ATTTTTCATAATCGGGGATACTCCAACTCCGATTTTATTTCCAAAACATCA
411116 ATTTTTCATAATCGGGGATACTCCAAC
1 ATTTTTCATAATCGGGGATACTCCAAC
411143 CCTGTTATTT
Statistics
Matches: 105, Mismatches: 22, Indels: 3
0.81 0.17 0.02
Matches are distributed among these distances:
50 8 0.08
51 96 0.91
52 1 0.01
ACGTcount: A:0.31, C:0.23, G:0.09, T:0.36
Consensus pattern (51 bp):
ATTTTTCATAATCGGGGATACTCCAACTCCGATTTTATTTCCAAAACATCA
Found at i:411241 original size:51 final size:51
Alignment explanation
Indices: 411160--411272 Score: 138
Period size: 51 Copynumber: 2.2 Consensus size: 51
411150 TTTTCGAGGG
* **
411160 GATACTCCAACGCCGGTTTTATTTCTAAAACACCAATTCTCCACAATCGGA
1 GATACTCCAACTCCACTTTTATTTCTAAAACACCAATTCTCCACAATCGGA
* * * * *
411211 GATATTCCAACTCCACTTTTATTT-TCAAAACACTAATTTTTCACAATCGGG
1 GATACTCCAACTCCACTTTTATTTCT-AAAACACCAATTCTCCACAATCGGA
411262 GATACTCCAAC
1 GATACTCCAAC
411273 CCCGTTATTT
Statistics
Matches: 52, Mismatches: 9, Indels: 2
0.83 0.14 0.03
Matches are distributed among these distances:
50 1 0.02
51 51 0.98
ACGTcount: A:0.32, C:0.27, G:0.10, T:0.31
Consensus pattern (51 bp):
GATACTCCAACTCCACTTTTATTTCTAAAACACCAATTCTCCACAATCGGA
Found at i:411260 original size:130 final size:130
Alignment explanation
Indices: 411027--411300 Score: 385
Period size: 130 Copynumber: 2.1 Consensus size: 130
411017 TTTCTTAATC
* * * *
411027 GGGGATACTCCAACTCCGATTTTATTTCTAAAACACCCATTTTCCATAATCGAAAATACTCCAAC
1 GGGGATACTCCAACGCCGATTTTATTTCTAAAACACCAATTCTCCACAATCGAAAATACTCCAAC
* * *
411092 TCTGATTTTATTTTCAAAACATCAATTTTTCATAATCGGGGATACTCCAACCCTGTTATTT-TCG
66 TCTCATTTTATTTTCAAAACATCAATTTTTCACAATCGGGGATACTCCAACCCCGTTATTTATC-
411156 A
130 A
* * * *
411157 GGGGATACTCCAACGCCGGTTTTATTTCTAAAACACCAATTCTCCACAATCGGAGATATTCCAAC
1 GGGGATACTCCAACGCCGATTTTATTTCTAAAACACCAATTCTCCACAATCGAAAATACTCCAAC
411222 TC-CACTTTTATTTTCAAAACA-CTAATTTTTCACAATCGGGGATACTCCAACCCCGTTATTTCA
66 TCTCA-TTTTATTTTCAAAACATC-AATTTTTCACAATCGGGGATACTCCAACCCCGTTATTT-A
411285 TCA
128 TCA
411288 -GGGATACTCCAAC
1 GGGGATACTCCAAC
411301 CCAGTTATTT
Statistics
Matches: 129, Mismatches: 11, Indels: 8
0.87 0.07 0.05
Matches are distributed among these distances:
129 2 0.02
130 124 0.96
131 1 0.01
132 2 0.02
ACGTcount: A:0.30, C:0.26, G:0.11, T:0.32
Consensus pattern (130 bp):
GGGGATACTCCAACGCCGATTTTATTTCTAAAACACCAATTCTCCACAATCGAAAATACTCCAAC
TCTCATTTTATTTTCAAAACATCAATTTTTCACAATCGGGGATACTCCAACCCCGTTATTTATCA
Found at i:411319 original size:28 final size:28
Alignment explanation
Indices: 411259--411324 Score: 91
Period size: 28 Copynumber: 2.4 Consensus size: 28
411249 TTTCACAATC
*
411259 GGGGATACTCCAACCCCGTTATTTCATCA
1 GGGGATACTCCAACCCAGTTATTTCA-CA
411288 -GGGATACTCCAACCCAGTTATTTC-CAA
1 GGGGATACTCCAACCCAGTTATTTCAC-A
411315 GGGGATACTC
1 GGGGATACTC
411325 AAACACTAGC
Statistics
Matches: 34, Mismatches: 1, Indels: 5
0.85 0.03 0.12
Matches are distributed among these distances:
26 1 0.03
27 1 0.03
28 32 0.94
ACGTcount: A:0.26, C:0.29, G:0.20, T:0.26
Consensus pattern (28 bp):
GGGGATACTCCAACCCAGTTATTTCACA
Found at i:414700 original size:20 final size:20
Alignment explanation
Indices: 414674--414728 Score: 74
Period size: 20 Copynumber: 2.8 Consensus size: 20
414664 AAAAAGATAG
*
414674 AATGTATCGATACATTCATA
1 AATGTATCGATACATTCAAA
* *
414694 CATGTATCGATACATTGAAA
1 AATGTATCGATACATTCAAA
*
414714 AATGTATTGATACAT
1 AATGTATCGATACAT
414729 CTGGGTACTT
Statistics
Matches: 30, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
20 30 1.00
ACGTcount: A:0.40, C:0.13, G:0.13, T:0.35
Consensus pattern (20 bp):
AATGTATCGATACATTCAAA
Found at i:418608 original size:15 final size:15
Alignment explanation
Indices: 418588--418628 Score: 64
Period size: 15 Copynumber: 2.7 Consensus size: 15
418578 TATTTGCTTG
418588 ACTAATGTTTGGTCA
1 ACTAATGTTTGGTCA
* *
418603 ATTAATGTTTGTTCA
1 ACTAATGTTTGGTCA
418618 ACTAATGTTTG
1 ACTAATGTTTG
418629 ATATCTGGTT
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
15 23 1.00
ACGTcount: A:0.27, C:0.10, G:0.17, T:0.46
Consensus pattern (15 bp):
ACTAATGTTTGGTCA
Found at i:418693 original size:22 final size:21
Alignment explanation
Indices: 418668--418711 Score: 61
Period size: 22 Copynumber: 2.0 Consensus size: 21
418658 GATATTTGGT
418668 TGTTTGATGTTTGATTGACTAA
1 TGTTTGATGTTTG-TTGACTAA
* *
418690 TGTTTGGTGTTTGTTGATTAA
1 TGTTTGATGTTTGTTGACTAA
418711 T
1 T
418712 ATCTAGTTGA
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
21 8 0.40
22 12 0.60
ACGTcount: A:0.18, C:0.02, G:0.25, T:0.55
Consensus pattern (21 bp):
TGTTTGATGTTTGTTGACTAA
Found at i:418730 original size:51 final size:51
Alignment explanation
Indices: 418666--418811 Score: 159
Period size: 51 Copynumber: 2.8 Consensus size: 51
418656 CTGATATTTG
* * *
418666 GTTGTTTGATGTTTGATTGACTAATGTTTGGTGTTTGTTGATTAATATCTA
1 GTTGATTGATGTTTGATTAACTAATGTTTGATGTTTGTTGATTAATATCTA
* * * * * **
418717 GTTGATTGATGTTTAATCAACTAATGTCTGATGCTTGGTTGACTGTTATCTA
1 GTTGATTGATGTTTGATTAACTAATGTTTGATG-TTTGTTGATTAATATCTA
* *
418769 GTAGA-TGATGTTTGATTAACTGATGTTTGATGTTTGGTTGATT
1 GTTGATTGATGTTTGATTAACTAATGTTTGATGTTT-GTTGATT
418812 GATGTCGATG
Statistics
Matches: 76, Mismatches: 17, Indels: 4
0.78 0.18 0.04
Matches are distributed among these distances:
50 2 0.03
51 56 0.74
52 18 0.24
ACGTcount: A:0.21, C:0.06, G:0.24, T:0.49
Consensus pattern (51 bp):
GTTGATTGATGTTTGATTAACTAATGTTTGATGTTTGTTGATTAATATCTA
Found at i:418814 original size:22 final size:22
Alignment explanation
Indices: 418774--418837 Score: 76
Period size: 21 Copynumber: 3.0 Consensus size: 22
418764 ATCTAGTAGA
* * *
418774 TGATGTTTGATTAACTGATGTT
1 TGATGTTTGGTTGATTGATGTT
418796 TGATGTTTGGTTGATTGATG-T
1 TGATGTTTGGTTGATTGATGTT
* *
418817 CGATGTCTGGTTGATTGATGT
1 TGATGTTTGGTTGATTGATGT
418838 ATGGTCAATT
Statistics
Matches: 36, Mismatches: 5, Indels: 2
0.84 0.12 0.05
Matches are distributed among these distances:
21 19 0.53
22 17 0.47
ACGTcount: A:0.17, C:0.05, G:0.30, T:0.48
Consensus pattern (22 bp):
TGATGTTTGGTTGATTGATGTT
Found at i:418842 original size:15 final size:15
Alignment explanation
Indices: 418818--418860 Score: 59
Period size: 15 Copynumber: 2.9 Consensus size: 15
418808 GATTGATGTC
**
418818 GATGTCTGGTTGATT
1 GATGTCTGGTCAATT
*
418833 GATGTATGGTCAATT
1 GATGTCTGGTCAATT
418848 GATGTCTGGTCAA
1 GATGTCTGGTCAA
418861 CTTATTTTTT
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
15 24 1.00
ACGTcount: A:0.21, C:0.09, G:0.30, T:0.40
Consensus pattern (15 bp):
GATGTCTGGTCAATT
Found at i:419762 original size:3 final size:3
Alignment explanation
Indices: 419747--419780 Score: 50
Period size: 3 Copynumber: 11.3 Consensus size: 3
419737 AACCATCAAA
* *
419747 GAT GAT GAA GAT GAT GGT GAT GAT GAT GAT GAT G
1 GAT GAT GAT GAT GAT GAT GAT GAT GAT GAT GAT G
419781 TTGACTCGGA
Statistics
Matches: 27, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
3 27 1.00
ACGTcount: A:0.32, C:0.00, G:0.38, T:0.29
Consensus pattern (3 bp):
GAT
Done.