genome.fa.s1070.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold1070
Parameters: 2 7 7 80 10 50 1000
Length:  100647

Tables:   1   

This is table  1  of  1  ( 71 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3780--3859	15	5.5	14	72	12	63	82	6	11	0	0.83
4825--5650	55	14.2	60	83	10	917	25	29	20	23	1.99
4848--5650	116	7.0	114	85	8	937	25	29	20	23	1.99
5515--5604	26	3.3	26	66	14	74	27	32	18	21	1.97
8087--8159	20	3.6	20	77	3	92	36	13	17	31	1.89
8105--8180	21	3.7	21	78	3	100	43	11	15	28	1.83
8087--8180	41	2.3	41	100	0	188	40	12	17	29	1.86
8219--8244	13	2.0	13	100	0	52	38	15	15	30	1.88
12306--12344	15	2.6	15	91	0	60	51	15	20	12	1.76
14350--14428	20	3.7	21	75	15	72	26	13	15	44	1.84
14415--14453	13	3.0	13	96	0	69	30	17	15	35	1.91
16890--16962	20	3.6	20	77	3	92	36	13	17	31	1.89
16908--16983	21	3.7	21	78	3	100	43	11	15	28	1.83
16890--16983	41	2.3	41	100	0	188	40	12	17	29	1.86
17022--17047	13	2.0	13	100	0	52	38	15	15	30	1.88
29949--29973	9	2.8	9	100	0	50	92	8	0	0	0.40
31174--31246	26	2.8	26	70	15	69	39	13	10	35	1.80
31254--31810	28	19.7	28	86	4	634	27	29	19	23	1.98
31254--31810	85	6.6	84	85	4	652	27	29	19	23	1.98
32756--32793	20	1.9	20	100	0	76	31	18	5	44	1.72
32745--32891	51	2.9	50	88	2	204	27	17	10	44	1.80
32745--32891	50	2.9	51	87	2	206	27	17	10	44	1.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33331--33369	21	1.9	21	84	5	53	25	12	10	51	1.71
33651--33682	12	2.7	12	95	0	55	0	18	25	56	1.42
35983--36012	13	2.3	13	94	0	51	80	3	16	0	0.85
39196--39889	312	2.2	311	82	4	812	39	21	15	23	1.92
39196--39895	156	4.5	156	78	4	682	39	21	16	23	1.92
41304--41348	21	2.2	21	88	11	67	6	4	15	73	1.21
41842--42403	165	3.4	165	74	9	408	50	8	9	31	1.65
42135--42444	166	1.9	164	84	5	419	51	4	10	32	1.57
44554--44755	79	2.6	79	80	3	219	31	16	28	23	1.96
44710--44785	28	2.7	28	89	0	107	23	21	34	21	1.97
44770--44940	51	3.3	50	79	12	175	32	13	24	29	1.93
44771--45112	105	3.2	103	70	15	304	32	12	25	29	1.93
44770--44940	52	3.3	49	77	14	166	32	13	24	29	1.93
44927--44997	27	2.6	27	88	2	97	22	21	32	23	1.98
44703--45109	212	1.9	213	92	2	685	31	13	26	28	1.94
44774--45098	51	6.2	53	68	16	156	32	12	25	29	1.93
47456--47481	13	2.0	13	100	0	52	38	15	15	30	1.88
47435--47501	33	2.0	33	88	0	98	43	16	14	25	1.86
47521--47575	19	2.9	19	97	0	101	40	14	10	34	1.81
48912--48954	21	2.0	23	86	9	63	81	9	9	0	0.88
49915--50036	50	2.5	50	95	1	219	31	20	22	25	1.98
50121--50579	51	9.0	51	75	6	286	35	20	18	25	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50130--50579	103	4.4	103	74	3	291	34	20	19	25	1.96
54666--54875	115	1.8	114	88	4	323	42	6	7	43	1.58
54588--54927	114	3.0	115	78	5	348	40	9	8	42	1.68
54682--54927	115	2.1	116	84	2	316	41	6	6	44	1.58
59618--59643	13	2.0	13	100	0	52	38	15	15	30	1.88
59543--59751	86	2.4	85	96	2	375	37	16	17	28	1.92
59704--59729	13	2.0	13	100	0	52	38	15	15	30	1.88
61945--61989	21	2.1	21	84	8	56	53	4	20	22	1.63
63793--63823	15	2.1	15	93	0	53	48	16	22	12	1.80
65903--65928	13	2.0	13	100	0	52	30	15	15	38	1.88
66049--66094	21	2.2	20	81	11	58	32	19	4	43	1.71
68382--68527	41	3.3	41	66	25	107	36	15	18	29	1.92
68382--68578	93	2.1	93	97	0	367	35	16	18	29	1.93
68566--68591	13	2.0	13	100	0	52	38	15	15	30	1.88
70593--70619	11	2.5	11	100	0	54	14	0	14	70	1.17
71725--71767	12	3.5	12	78	6	50	72	6	11	9	1.29
73124--73466	156	2.2	155	79	6	354	25	16	20	37	1.93
75779--75813	17	2.1	16	89	5	52	28	0	2	68	1.04
78041--78068	2	14.0	2	100	0	56	50	0	0	50	1.00
79260--79315	23	2.5	24	82	8	66	42	14	5	37	1.68
79272--79315	23	2.0	22	90	4	70	40	13	4	40	1.65
79260--79318	22	2.7	21	82	10	73	45	13	5	35	1.66
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
85098--85215	29	4.1	29	86	5	150	64	13	5	16	1.47
88648--88704	21	2.8	20	76	12	62	71	5	3	19	1.19
94777--94817	2	21.0	2	95	5	75	48	0	51	0	1.00
97281--97311	3	10.7	3	93	6	55	67	0	0	32	0.91
98485--98527	3	14.3	3	100	0	86	32	0	0	67	0.91

Tables:   1

The End!