Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold1074
Parameters: 2 7 7 80 10 50 1000
Length:  55219

Tables:   1   

This is table  1  of  1  ( 40 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1295--1319
9
2.8
9
100
0
50
60
0
0
40
0.97
4553--4681
52
2.5
52
98
0
249
27
18
18
34
1.95
4690--4714
13
1.9
13
100
0
50
36
16
16
32
1.90
4757--4886
19
7.8
18
70
29
110
36
17
12
33
1.87
4776--4864
13
5.9
13
72
27
70
33
17
13
34
1.89
4755--4884
32
4.0
32
97
1
242
35
17
12
34
1.87
9558--9633
20
3.8
20
86
10
111
42
9
15
32
1.79
16888--17115
114
2.0
114
88
1
343
61
12
11
14
1.57
19469--19591
53
2.3
53
87
1
174
39
18
13
28
1.88
19925--20003
7
10.0
8
71
17
58
69
1
0
29
0.96
19949--19998
9
5.8
9
79
11
52
72
0
0
28
0.86
24256--24296
2
20.5
2
100
0
82
48
0
0
51
1.00
24718--24761
6
7.3
6
80
10
54
68
0
0
31
0.90
24719--24772
18
3.0
18
83
5
65
68
1
0
29
1.00
26153--26186
16
2.1
16
100
0
68
52
0
0
47
1.00
26165--26213
23
2.1
23
88
0
80
55
0
2
42
1.11
30184--30258
28
2.7
28
82
0
96
28
22
26
22
1.99
30105--30336
107
2.2
107
82
3
281
31
15
25
28
1.95
30212--30733
79
6.6
79
91
0
814
31
16
26
25
1.96
30687--30756
27
2.5
28
86
6
90
22
18
32
25
1.97
33180--33205
13
2.0
13
100
0
52
38
15
15
30
1.88
36328--36456
52
2.5
52
92
0
222
27
16
19
36
1.93
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
36328--36476
52
2.9
52
88
2
183
29
15
19
35
1.93
36561--36585
13
1.9
13
100
0
50
32
16
16
36
1.90
36886--36937
21
2.6
21
90
6
81
32
15
13
38
1.86
49856--49971
52
2.3
51
95
1
205
30
17
18
34
1.93
49856--49991
52
2.6
52
87
5
188
31
16
18
33
1.94
49980--50004
13
1.9
13
100
0
50
36
16
16
32
1.90
50045--50111
33
2.0
33
85
0
89
38
13
13
34
1.84
50992--51220
49
4.7
49
85
8
308
31
17
24
27
1.97
51213--51301
30
3.0
30
74
19
96
16
16
35
30
1.92
51241--51691
30
15.3
29
77
9
353
25
16
29
29
1.97
51225--51480
88
2.9
88
84
6
331
21
18
29
30
1.97
51309--51686
209
1.8
206
86
1
549
26
16
28
28
1.97
51222--51691
59
7.9
57
75
10
324
24
17
29
28
1.97
53116--53238
1
123.0
1
75
0
102
1
2
8
86
0.71
53116--53214
21
4.6
21
80
10
119
1
1
10
87
0.63
53116--53226
43
2.5
44
88
4
152
1
1
9
87
0.69
53116--53238
19
6.2
19
80
11
131
1
2
8
86
0.71
53116--53216
12
8.2
12
81
13
116
0
0
9
88
0.62

Tables:   1

The End!