Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Scaffold1076
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 197709
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
File 1 of 2
Found at i:356 original size:21 final size:20
Alignment explanation
Indices: 312--357 Score: 58
Period size: 21 Copynumber: 2.3 Consensus size: 20
302 AAAGGATCCC
*
312 TAAA-ATGTTAAAAATGCCT
1 TAAATATGTTAAAAATGCAT
*
331 AAAATATGTTTAAAAATGCAT
1 TAAATATG-TTAAAAATGCAT
352 TAAATA
1 TAAATA
358 CTCCTTACAT
Statistics
Matches: 22, Mismatches: 3, Indels: 2
0.81 0.11 0.07
Matches are distributed among these distances:
19 3 0.14
20 3 0.14
21 16 0.73
ACGTcount: A:0.52, C:0.07, G:0.09, T:0.33
Consensus pattern (20 bp):
TAAATATGTTAAAAATGCAT
Found at i:1318 original size:22 final size:22
Alignment explanation
Indices: 1291--1335 Score: 65
Period size: 22 Copynumber: 2.1 Consensus size: 22
1281 GTGTTTTTGT
*
1291 TCTTTTTGGCCA-AAACCATCC
1 TCTTTTTTGCCACAAACCATCC
*
1312 TCTTTTTTTCCACAAACCATCC
1 TCTTTTTTGCCACAAACCATCC
1334 TC
1 TC
1336 CCCATTTAAA
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
21 10 0.48
22 11 0.52
ACGTcount: A:0.22, C:0.36, G:0.04, T:0.38
Consensus pattern (22 bp):
TCTTTTTTGCCACAAACCATCC
Found at i:3028 original size:18 final size:19
Alignment explanation
Indices: 3005--3046 Score: 68
Period size: 19 Copynumber: 2.3 Consensus size: 19
2995 TTTTATGCTA
*
3005 AACTAGCT-AAGTTATTTT
1 AACTAGCTAAACTTATTTT
3023 AACTAGCTAAACTTATTTT
1 AACTAGCTAAACTTATTTT
3042 AACTA
1 AACTA
3047 CCTACGTTGG
Statistics
Matches: 22, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
18 8 0.36
19 14 0.64
ACGTcount: A:0.38, C:0.14, G:0.07, T:0.40
Consensus pattern (19 bp):
AACTAGCTAAACTTATTTT
Found at i:3369 original size:56 final size:56
Alignment explanation
Indices: 3304--3438 Score: 137
Period size: 56 Copynumber: 2.4 Consensus size: 56
3294 ACTTACTAGC
* * * * ** *
3304 TACTCTTGGGTTTTCTCATTTTGGCATTGATTTTAATTGGAGCTGTATCTACTTGT
1 TACTATTGGGTTTTCTCATTTTGGCATTAATTTCAATTAGAGCTACATCTACTCGT
* * *
3360 TACTATTGGGCTTTT-TCATTTGGGTATTAATTTCAATTAGAGCTACATTTACTCGT
1 TACTATTGGG-TTTTCTCATTTTGGCATTAATTTCAATTAGAGCTACATCTACTCGT
* * *
3416 TACTTTTGAGCTTTCTCATTTTG
1 TACTATTGGGTTTTCTCATTTTG
3439 ATGCTAATTT
Statistics
Matches: 63, Mismatches: 14, Indels: 4
0.78 0.17 0.05
Matches are distributed among these distances:
55 3 0.05
56 56 0.89
57 4 0.06
ACGTcount: A:0.19, C:0.15, G:0.17, T:0.50
Consensus pattern (56 bp):
TACTATTGGGTTTTCTCATTTTGGCATTAATTTCAATTAGAGCTACATCTACTCGT
Found at i:3673 original size:56 final size:56
Alignment explanation
Indices: 3424--4081 Score: 214
Period size: 56 Copynumber: 11.8 Consensus size: 56
3414 GTTACTTTTG
* * * * *
3424 AGCTTTCTCATTTTGATGCTAATTTTAGCTAAAGCTATACCTTCTAACTACTC-TC
1 AGCTTTCTCATTTTGGTGCTAATTTCAACTGAAGCTATACCTACTAACTACTCTTC
* * * ** *
3479 AAGGTTTCTCATTTTGGTGCTAATTTCAACT-AGAGTTATACCTAGTGGCTACT-TTT
1 -AGCTTTCTCATTTTGGTGCTAATTTCAACTGA-AGCTATACCTACTAACTACTCTTC
* * * * * * * * * *
3535 AGGCTCTATCATCTTAGTGCCAATTTTAATTGGAGCTATATCTA-TGAACTACTCTTG
1 A-GCTTTCTCATTTTGGTGCTAATTTCAACTGAAGCTATACCTACT-AACTACTCTTC
* * * * * * * * * *
3592 GGCTTTCTGATCTTGCTGTTGATTTCAATTGAAGTTGTACCTACCAACTACTCTTC
1 AGCTTTCTCATTTTGGTGCTAATTTCAACTGAAGCTATACCTACTAACTACTCTTC
* * *
3648 AGCTTTCTCATTTTGGTGCTAATTTCAACT-AGAGCTATACCTGGC-AGCTACTCTTA
1 AGCTTTCTCATTTTGGTGCTAATTTCAACTGA-AGCTATACCT-ACTAACTACTCTTC
* * * * * * * * * * *
3704 AGCTTTTTTATTTTGATGTTAATTTCAGCTGGAA-TTGTACTTACTAGCTA-TTTTT
1 AGCTTTCTCATTTTGGTGCTAATTTCAACT-GAAGCTATACCTACTAACTACTCTTC
* * * * * * * * * * * * *
3759 TGTTTATATCATCTTGGAGTTAATTTCAAGT-AGAGTTATACATACTAA-AATTTTTGG
1 AGCTT-TCTCATTTTGGTGCTAATTTCAACTGA-AGCTATACCTACTAACTACTCTT-C
* * * * * * *
3816 GGCTTTCTTATTTTGGTGTTGATTTCAACTAAAGCTATACCTACCAACTAATCTT-
1 AGCTTTCTCATTTTGGTGCTAATTTCAACTGAAGCTATACCTACTAACTACTCTTC
* * * * * * * * * * * *
3871 AGGTTTTCTCATTTTGGAGTTAATTTTAATTGGAGCTATACTTGCTAGCTATTTTTG
1 A-GCTTTCTCATTTTGGTGCTAATTTCAACTGAAGCTATACCTACTAACTACTCTTC
* * * ** * * *
3928 AGTTTTCTTATTTTGGTG-TAGATTTTAACT-AGAGCTATAAATACTAGCTA-TTTTG
1 AGCTTTCTCATTTTGGTGCTA-ATTTCAACTGA-AGCTATACCTACTAACTACTCTTC
* * * * *
3983 GGCTTTCTCATTTTGGTGCCAATTTCAACTGGAGCTATACCTACTAGCTAC-CTTG
1 AGCTTTCTCATTTTGGTGCTAATTTCAACTGAAGCTATACCTACTAACTACTCTTC
* * * * * *
4038 AACTTTATCATCTTCGTGCTAATTT-AAATTAGAGCTATACCTAC
1 AGCTTTCTCATTTTGGTGCTAATTTCAACTGA-AGCTATACCTAC
4082 AAGTTACTTT
Statistics
Matches: 444, Mismatches: 131, Indels: 55
0.70 0.21 0.09
Matches are distributed among these distances:
54 4 0.01
55 93 0.21
56 333 0.75
57 13 0.03
58 1 0.00
ACGTcount: A:0.25, C:0.17, G:0.15, T:0.43
Consensus pattern (56 bp):
AGCTTTCTCATTTTGGTGCTAATTTCAACTGAAGCTATACCTACTAACTACTCTTC
Found at i:3823 original size:168 final size:167
Alignment explanation
Indices: 3649--4026 Score: 397
Period size: 168 Copynumber: 2.3 Consensus size: 167
3639 CTACTCTTCA
** * * *
3649 GCTTTCTCATTTTGGTGCTAATTTCAACTAGAGCTATACCTGGCAGCTACTCTTAAGCTTTT-TT
1 GCTTTCTCATTTTGGTGCTAATTTCAACTAGAGCTATACCTACCAACTAATCTT-AGCTTTTCTC
* * * *
3713 ATTTT-GATGTTAATTTCAGCTGGAATTGTACTTACTAGCTATTTTT-TGTTTATATCATCTTGG
65 ATTTTGGA-GTTAATTTCAACTGGAACTATACTTACTAGCTATTTTTGAGTTT-TATCATCTTGG
* * *
3776 AGTTA-ATTTCAAGTAGAGTTATACATACTAAA-ATTTTTGGG
128 AG-TAGATTTCAACTAGAGCTATAAATACTAAATA-TTTT-GG
* * * * *
3817 GCTTTCTTATTTTGGTGTTGATTTCAACTAAAGCTATACCTACCAACTAATCTTAGGTTTTCTCA
1 GCTTTCTCATTTTGGTGCTAATTTCAACTAGAGCTATACCTACCAACTAATCTTAGCTTTTCTCA
* * * * * * * *
3882 TTTTGGAGTTAATTTTAATTGGAGCTATACTTGCTAGCTATTTTTGAGTTTTCTTATTTTGGTGT
66 TTTTGGAGTTAATTTCAACTGGAACTATACTTACTAGCTATTTTTGAGTTTTATCATCTTGGAGT
* **
3947 AGATTTTAACTAGAGCTATAAATACTAGCTATTTTGG
131 AGATTTCAACTAGAGCTATAAATACTAAATATTTTGG
* *
3984 GCTTTCTCATTTTGGTGCCAATTTCAACTGGAGCTATACCTAC
1 GCTTTCTCATTTTGGTGCTAATTTCAACTAGAGCTATACCTAC
4027 TAGCTACCTT
Statistics
Matches: 171, Mismatches: 34, Indels: 11
0.79 0.16 0.05
Matches are distributed among these distances:
167 47 0.27
168 117 0.68
169 7 0.04
ACGTcount: A:0.24, C:0.15, G:0.16, T:0.44
Consensus pattern (167 bp):
GCTTTCTCATTTTGGTGCTAATTTCAACTAGAGCTATACCTACCAACTAATCTTAGCTTTTCTCA
TTTTGGAGTTAATTTCAACTGGAACTATACTTACTAGCTATTTTTGAGTTTTATCATCTTGGAGT
AGATTTCAACTAGAGCTATAAATACTAAATATTTTGG
Found at i:4030 original size:111 final size:112
Alignment explanation
Indices: 3819--4032 Score: 268
Period size: 111 Copynumber: 1.9 Consensus size: 112
3809 TTTTTGGGGC
* ** *
3819 TTTCTTATTTTGGTGTTGATTTCAACTAAAGCTATACCTACCAACTAATCTTAGGTTTTCTCATT
1 TTTCTTATTTTGGTGTAGATTTCAACTAAAGCTATAAATACCAACTAATCTTAGGCTTTCTCATT
** * * * *
3884 TTGGAGTTAATTTTAATTGGAGCTATACTTGCTAGCTATTTTTGAGT
66 TTGGAGCCAATTTCAACTGGAGCTATACCTACTAGCTATTTTTGAGT
* * * * * *
3931 TTTCTTATTTTGGTGTAGATTTTAACTAGAGCTATAAATACTAGCT-ATTTTGGGCTTTCTCATT
1 TTTCTTATTTTGGTGTAGATTTCAACTAAAGCTATAAATACCAACTAATCTTAGGCTTTCTCATT
*
3995 TTGGTGCCAATTTCAACTGGAGCTATACCTACTAGCTA
66 TTGGAGCCAATTTCAACTGGAGCTATACCTACTAGCTA
4033 CCTTGAACTT
Statistics
Matches: 85, Mismatches: 17, Indels: 1
0.83 0.17 0.01
Matches are distributed among these distances:
111 46 0.54
112 39 0.46
ACGTcount: A:0.24, C:0.15, G:0.16, T:0.44
Consensus pattern (112 bp):
TTTCTTATTTTGGTGTAGATTTCAACTAAAGCTATAAATACCAACTAATCTTAGGCTTTCTCATT
TTGGAGCCAATTTCAACTGGAGCTATACCTACTAGCTATTTTTGAGT
Found at i:4212 original size:56 final size:56
Alignment explanation
Indices: 4152--4371 Score: 196
Period size: 56 Copynumber: 3.9 Consensus size: 56
4142 TCTTAGTGGC
* * *
4152 AATTTTAACTAGAGCTACACCTACTAGCTGTTCTTGGGCTTTCTCATTTTGGTACT
1 AATTTCAACTAGAGCTATACCTACTAGCTATTCTTGGGCTTTCTCATTTTGGTACT
* * * * ** * * *
4208 AATTTCAATTAAAGCTATACTTACCATTTATTCTT-GACTTTCTCATTTTAGTGCT
1 AATTTCAACTAGAGCTATACCTACTAGCTATTCTTGGGCTTTCTCATTTTGGTACT
* * *
4263 AATTTCAACTAGACCTATACCTACTAGCTACTT-TTGTGCTTTCTTATTTTGGTACT
1 AATTTCAACTAGAGCTATACCTACTAGCTA-TTCTTGGGCTTTCTCATTTTGGTACT
* * * * * *
4319 AATTTTAACCAGAG-TAATAACTACCAGTTACTT-TTAGGCTTTCTCATTTTGGT
1 AATTTCAACTAGAGCT-ATACCTACTAGCTA-TTCTTGGGCTTTCTCATTTTGGT
4372 GCCAATTTTA
Statistics
Matches: 128, Mismatches: 33, Indels: 6
0.77 0.20 0.04
Matches are distributed among these distances:
55 43 0.34
56 85 0.66
ACGTcount: A:0.25, C:0.20, G:0.12, T:0.44
Consensus pattern (56 bp):
AATTTCAACTAGAGCTATACCTACTAGCTATTCTTGGGCTTTCTCATTTTGGTACT
Found at i:4344 original size:111 final size:111
Alignment explanation
Indices: 4124--4379 Score: 270
Period size: 111 Copynumber: 2.3 Consensus size: 111
4114 GTTTACTAAC
* * * * * *
4124 TATTCTTAGTCTTTATCATCTTAGTGGCAATTTTAACTAGAGCTACACCTACTAGCTGTTCTTGG
1 TATTCTTAGACTTTCTCATTTTAGT-GCAATTTCAACTAGACCTACACCTACTAGCTCTTCTTGG
** *
4189 GCTTTCTCATTTTGGTACTAATTTCAATTAAAGCTATACTTACCATT
65 GCTTTCTCATTTTGGTACTAATTTCAACCAAAGCTATACTTACCAGT
*
4236 TATTCTT-GACTTTCTCATTTTAGTGCTAATTTCAACTAGACCTATACCTACTAGCTACTT-TTG
1 TATTCTTAGACTTTCTCATTTTAGTGC-AATTTCAACTAGACCTACACCTACTAGCT-CTTCTTG
* * * *
4299 TGCTTTCTTATTTTGGTACTAATTTTAACCAGAG-TAATAAC-TACCAGT
64 GGCTTTCTCATTTTGGTACTAATTTCAACCAAAGCT-AT-ACTTACCAGT
* *
4347 TACTT-TTAGGCTTTCTCATTTTGGTGCCAATTT
1 TA-TTCTTAGACTTTCTCATTTTAGTG-CAATTT
4380 TACTAGGAAC
Statistics
Matches: 121, Mismatches: 16, Indels: 14
0.80 0.11 0.09
Matches are distributed among these distances:
110 3 0.02
111 83 0.69
112 34 0.28
113 1 0.01
ACGTcount: A:0.24, C:0.20, G:0.12, T:0.44
Consensus pattern (111 bp):
TATTCTTAGACTTTCTCATTTTAGTGCAATTTCAACTAGACCTACACCTACTAGCTCTTCTTGGG
CTTTCTCATTTTGGTACTAATTTCAACCAAAGCTATACTTACCAGT
Found at i:6488 original size:19 final size:20
Alignment explanation
Indices: 6449--6497 Score: 64
Period size: 19 Copynumber: 2.5 Consensus size: 20
6439 AGTTTTATGC
**
6449 ATCGATACAATTGTGCATGT
1 ATCGATACAATTGAACATGT
6469 ATCGATACAA-TGAACATGT
1 ATCGATACAATTGAACATGT
*
6488 ATTGATACAA
1 ATCGATACAA
6498 AGCATAATGT
Statistics
Matches: 26, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
19 16 0.62
20 10 0.38
ACGTcount: A:0.39, C:0.14, G:0.16, T:0.31
Consensus pattern (20 bp):
ATCGATACAATTGAACATGT
Found at i:7754 original size:11 final size:11
Alignment explanation
Indices: 7738--7791 Score: 58
Period size: 11 Copynumber: 5.1 Consensus size: 11
7728 AAGAGATGTT
7738 TTGATGAAAAA
1 TTGATGAAAAA
*
7749 TTGATG-AAAT
1 TTGATGAAAAA
* * *
7759 TTTAAGAAAAT
1 TTGATGAAAAA
7770 TTGA-GAAAAA
1 TTGATGAAAAA
7780 TTGATGAAAAA
1 TTGATGAAAAA
7791 T
1 T
7792 CGTTAGGGTT
Statistics
Matches: 36, Mismatches: 5, Indels: 4
0.80 0.11 0.09
Matches are distributed among these distances:
10 16 0.44
11 20 0.56
ACGTcount: A:0.52, C:0.00, G:0.17, T:0.31
Consensus pattern (11 bp):
TTGATGAAAAA
Found at i:11042 original size:52 final size:52
Alignment explanation
Indices: 10964--11092 Score: 224
Period size: 52 Copynumber: 2.5 Consensus size: 52
10954 CGAAATATGA
10964 AAATTTGCCTGCATGTATCGATACATT-TAATAGTGTATCAATACATCTGGGC
1 AAATTTGCCTGCATGTATCGATACATTCT-ATAGTGTATCAATACATCTGGGC
* *
11016 AAATTTGCCTACATGTATCGATACATTCTATAGTGTATCGATACATCTGGGC
1 AAATTTGCCTGCATGTATCGATACATTCTATAGTGTATCAATACATCTGGGC
11068 AAATTTGCCTGCATGTATCGATACA
1 AAATTTGCCTGCATGTATCGATACA
11093 AAGATCAGTG
Statistics
Matches: 73, Mismatches: 3, Indels: 2
0.94 0.04 0.03
Matches are distributed among these distances:
52 72 0.99
53 1 0.01
ACGTcount: A:0.30, C:0.19, G:0.17, T:0.34
Consensus pattern (52 bp):
AAATTTGCCTGCATGTATCGATACATTCTATAGTGTATCAATACATCTGGGC
Found at i:11103 original size:52 final size:51
Alignment explanation
Indices: 10964--11112 Score: 219
Period size: 52 Copynumber: 2.9 Consensus size: 51
10954 CGAAATATGA
10964 AAATTTGCCTGCATGTATCGATACATTTAATAGTGTATCAATACATCTGGGC
1 AAATTTGCCTGCATGTATCGATACA-TTAATAGTGTATCAATACATCTGGGC
* * *
11016 AAATTTGCCTACATGTATCGATACATTCTATAGTGTATCGATACATCTGGGC
1 AAATTTGCCTGCATGTATCGATACATT-AATAGTGTATCAATACATCTGGGC
*
11068 AAATTTGCCTGCATGTATCGATACA-AAGATCAGTGTATCAATACA
1 AAATTTGCCTGCATGTATCGATACATTA-AT-AGTGTATCAATACA
11113 ATGTATCGAT
Statistics
Matches: 87, Mismatches: 7, Indels: 6
0.87 0.07 0.06
Matches are distributed among these distances:
51 4 0.05
52 83 0.95
ACGTcount: A:0.32, C:0.18, G:0.17, T:0.33
Consensus pattern (51 bp):
AAATTTGCCTGCATGTATCGATACATTAATAGTGTATCAATACATCTGGGC
Found at i:11205 original size:32 final size:33
Alignment explanation
Indices: 11164--11232 Score: 131
Period size: 32 Copynumber: 2.1 Consensus size: 33
11154 GGCAATAGCT
11164 TACATTGTATCGATACAACAC-TTATGTATCGA
1 TACATTGTATCGATACAACACTTTATGTATCGA
11196 TACATTGTATCGATACAACACTTTATGTATCGA
1 TACATTGTATCGATACAACACTTTATGTATCGA
11229 TACA
1 TACA
11233 AATCATTGAA
Statistics
Matches: 36, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
32 21 0.58
33 15 0.42
ACGTcount: A:0.35, C:0.19, G:0.12, T:0.35
Consensus pattern (33 bp):
TACATTGTATCGATACAACACTTTATGTATCGA
Found at i:11206 original size:13 final size:13
Alignment explanation
Indices: 11188--11212 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
11178 ACAACACTTA
11188 TGTATCGATACAT
1 TGTATCGATACAT
11201 TGTATCGATACA
1 TGTATCGATACA
11213 ACACTTTATG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.36
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:16007 original size:19 final size:19
Alignment explanation
Indices: 15970--16009 Score: 53
Period size: 19 Copynumber: 2.1 Consensus size: 19
15960 GAGCGGCCAC
*
15970 TTTTTTTTATTGATGTTCA
1 TTTTTTTTATTGATATTCA
* *
15989 TTTTTTTTCTTGCTATTCA
1 TTTTTTTTATTGATATTCA
16008 TT
1 TT
16010 CCCATTATTT
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.12, C:0.10, G:0.07, T:0.70
Consensus pattern (19 bp):
TTTTTTTTATTGATATTCA
Found at i:26740 original size:33 final size:33
Alignment explanation
Indices: 26674--26742 Score: 86
Period size: 33 Copynumber: 2.1 Consensus size: 33
26664 CCGTTACAAG
* * *
26674 CAATGTATTGATACAATTCATCATATATTGATA
1 CAATGTATCGATACAATTCACCATATATCGATA
*
26707 CAATGTATCGATACAATGT-ACCATGTATCGATA
1 CAATGTATCGATACAAT-TCACCATATATCGATA
26740 CAA
1 CAA
26743 ACAGTGGTAA
Statistics
Matches: 31, Mismatches: 4, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
33 30 0.97
34 1 0.03
ACGTcount: A:0.39, C:0.16, G:0.12, T:0.33
Consensus pattern (33 bp):
CAATGTATCGATACAATTCACCATATATCGATA
Found at i:26815 original size:19 final size:19
Alignment explanation
Indices: 26770--26831 Score: 70
Period size: 20 Copynumber: 3.2 Consensus size: 19
26760 ACTGCCAGTT
* *
26770 TCATGTATTGATACAATTA
1 TCATGTATCGATACAATGA
*
26789 TCCATGTATCAATACAATGA
1 T-CATGTATCGATACAATGA
*
26809 TCATGTATCGATATAATGTA
1 TCATGTATCGATACAATG-A
26829 TCA
1 TCA
26832 ATACAATGTA
Statistics
Matches: 36, Mismatches: 5, Indels: 3
0.82 0.11 0.07
Matches are distributed among these distances:
19 16 0.44
20 20 0.56
ACGTcount: A:0.37, C:0.15, G:0.11, T:0.37
Consensus pattern (19 bp):
TCATGTATCGATACAATGA
Found at i:26829 original size:13 final size:13
Alignment explanation
Indices: 26811--26850 Score: 62
Period size: 13 Copynumber: 3.1 Consensus size: 13
26801 TACAATGATC
*
26811 ATGTATCGATATA
1 ATGTATCGATACA
*
26824 ATGTATCAATACA
1 ATGTATCGATACA
26837 ATGTATCGATACA
1 ATGTATCGATACA
26850 A
1 A
26851 AGCATAATAT
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
13 24 1.00
ACGTcount: A:0.42, C:0.12, G:0.12, T:0.33
Consensus pattern (13 bp):
ATGTATCGATACA
Found at i:27729 original size:21 final size:20
Alignment explanation
Indices: 27684--27745 Score: 61
Period size: 21 Copynumber: 3.0 Consensus size: 20
27674 AATGCTCTTG
* * *
27684 AAAAGAAAGTAACTGAGCTAG
1 AAAAGAAAATAA-TGAGTTAC
27705 AAAAGAAAATAAGTGAGTTAC
1 AAAAGAAAATAA-TGAGTTAC
*
27726 AAAATGAAAATGATGAGTTA
1 AAAA-GAAAATAATGAGTTA
27746 ACTAATAAAA
Statistics
Matches: 35, Mismatches: 5, Indels: 2
0.83 0.12 0.05
Matches are distributed among these distances:
21 28 0.80
22 7 0.20
ACGTcount: A:0.55, C:0.05, G:0.21, T:0.19
Consensus pattern (20 bp):
AAAAGAAAATAATGAGTTAC
Found at i:29087 original size:79 final size:78
Alignment explanation
Indices: 29004--29412 Score: 441
Period size: 79 Copynumber: 5.2 Consensus size: 78
28994 ATAAAAACGT
* * ** *
29004 GGTTGGAGTATCCCTTCGTAAATAACAGGGTTGGAATGTCCTTGATTGTGAAAAATCAGTGTTTT
1 GGTTGGAGTATCCCTTCGAAAATAAC-GGGTTGGAGTGTCCCCGATGGTGAAAAATCAGTGTTTT
*
29069 AGAAATAAAACTGG
65 AGAAATAAAACTGA
* * * *
29083 GGTTGGAGTATCCCCTT-GAAAATAGCGAGGTTGGAGTGTTCCCGATGGCGAAAAATC-GAAGTT
1 GGTTGGAGTAT-CCCTTCGAAAATAACG-GGTTGGAGTGTCCCCGATGGTGAAAAATCAG-TGTT
*
29146 TTAGAAATAAAATTGA
63 TTAGAAATAAAACTGA
* * * * *
29162 GGTTAGAGTATCCCCTC-AGAAATAACGGGGTTGGAGTGACCCTGATGGTGAAAAATCAGTGTTA
1 GGTTGGAGTATCCCTTCGA-AAATAAC-GGGTTGGAGTGTCCCCGATGGTGAAAAATCAGTGTTT
29226 TAGAAATAAAACT-A
64 TAGAAATAAAACTGA
* * * * *
29240 GGATTGGAGTATCCCTTTGAAAATAATGGGGTTGGAGTATCCCCGATGGTGGAAAATCAATGTTT
1 GG-TTGGAGTATCCCTTCGAAAATAA-CGGGTTGGAGTGTCCCCGATGGTGAAAAATCAGTGTTT
* *
29305 TAGGAATAAAACTAA
64 TAGAAATAAAACTGA
* * * * *
29320 GGTTGGAGTATCCCTTCGGAAATAACGAGGTTGGAGTATCCTCGATGGTGAAAAAAT-GGTATTT
1 GGTTGGAGTATCCCTTCGAAAATAACG-GGTTGGAGTGTCCCCGATGGTG-AAAAATCAGTGTTT
29384 TAGAAATAAAACTGA
64 TAGAAATAAAACTGA
29399 GGTTGGAGTATCCC
1 GGTTGGAGTATCCC
29413 CGATGGTGGG
Statistics
Matches: 275, Mismatches: 42, Indels: 26
0.80 0.12 0.08
Matches are distributed among these distances:
78 11 0.04
79 248 0.90
80 16 0.06
ACGTcount: A:0.33, C:0.12, G:0.27, T:0.28
Consensus pattern (78 bp):
GGTTGGAGTATCCCTTCGAAAATAACGGGTTGGAGTGTCCCCGATGGTGAAAAATCAGTGTTTTA
GAAATAAAACTGA
Found at i:29216 original size:158 final size:157
Alignment explanation
Indices: 29004--29413 Score: 511
Period size: 158 Copynumber: 2.6 Consensus size: 157
28994 ATAAAAACGT
* * * * *
29004 GGTTGGAGTATCCCTTCGTAAATAACAGGGTTGGAATGTCCTTGATTGTGAAAAATCAGTGTTTT
1 GGTTGGAGTATCCCTTCG-AAATAACGGGGTTGGAGTGACCCTGATGGTGAAAAATCAGTGTTTT
* * *
29069 AGAAATAAAACTGGGGTTGGAGTATCCCCTTGAAAATAGCGAGGTTGGAGTGTTCCCGATGGCGA
65 AGAAATAAAACTGGGGTTGGAGTATCCCCTTGAAAATAACGAGGTTGGAGTATCCCCGATGGCGA
* *
29134 AAAATCGAA-GTTTTAGAAATAAAATTGA
130 AAAATC-AATGTTTTAGAAATAAAACTAA
* * *
29162 GGTTAGAGTATCCCCTCAGAAATAACGGGGTTGGAGTGACCCTGATGGTGAAAAATCAGTGTTAT
1 GGTTGGAGTATCCCTTC-GAAATAACGGGGTTGGAGTGACCCTGATGGTGAAAAATCAGTGTTTT
* * * * * * *
29227 AGAAATAAAACTAGGATTGGAGTATCCCTTTGAAAATAATGGGGTTGGAGTATCCCCGATGGTGG
65 AGAAATAAAACTGGGGTTGGAGTATCCCCTTGAAAATAACGAGGTTGGAGTATCCCCGATGGCGA
*
29292 AAAATCAATGTTTTAGGAATAAAACTAA
130 AAAATCAATGTTTTAGAAATAAAACTAA
* * * *
29320 GGTTGGAGTATCCCTTCGGAAATAACGAGGTTGGAGT-ATCCTCGATGGTGAAAAAAT-GGTATT
1 GGTTGGAGTATCCCTTC-GAAATAACGGGGTTGGAGTGACCCT-GATGGTG-AAAAATCAGTGTT
*
29383 TTAGAAATAAAACTGAGGTTGGAGTATCCCC
63 TTAGAAATAAAACTGGGGTTGGAGTATCCCC
29414 GATGGTGGGT
Statistics
Matches: 215, Mismatches: 33, Indels: 8
0.84 0.13 0.03
Matches are distributed among these distances:
157 6 0.03
158 202 0.94
159 7 0.03
ACGTcount: A:0.33, C:0.13, G:0.27, T:0.28
Consensus pattern (157 bp):
GGTTGGAGTATCCCTTCGAAATAACGGGGTTGGAGTGACCCTGATGGTGAAAAATCAGTGTTTTA
GAAATAAAACTGGGGTTGGAGTATCCCCTTGAAAATAACGAGGTTGGAGTATCCCCGATGGCGAA
AAATCAATGTTTTAGAAATAAAACTAA
Found at i:29519 original size:131 final size:130
Alignment explanation
Indices: 29269--29525 Score: 358
Period size: 131 Copynumber: 2.0 Consensus size: 130
29259 AAAATAATGG
* *
29269 GGTTGGAGTATCCCCGATGGTGGAAAATCAATGTTTTAGGAATAAAACTAAGGTTGGAGTATCCC
1 GGTTGGAGTATCCCCGATGGTGGAAAATCAATATTTTAGAAATAAAACTAAGGTTGGAGTATCCC
* * * *
29334 TTCGGAAATAACGAGGTTGGAGTATCCTCGATGGTGAAAAAATGGTATTTTAGAAATAAAACTGA
66 CTCGAAAATAACGAGGTTAGAGTATCCTCGATGGTGAAAAAATGCTATTTTAGAAATAAAACTGA
** * **
29399 GGTTGGAGTATCCCCGATGGTGGGTAATCAATATTTTAGAAATAAAATTGGGGTTTGGAGTATCC
1 GGTTGGAGTATCCCCGATGGTGGAAAATCAATATTTTAGAAATAAAACTAAGG-TTGGAGTATCC
29464 CCTCGAAAATAAC-AGGGTTAGAGTATCC-CTGATGGTG-AAAAATCGCTATTTTAGAAATAAAA
65 CCTCGAAAATAACGA-GGTTAGAGTATCCTC-GATGGTGAAAAAAT-GCTATTTTAGAAATAAAA
29526 ACATCAATGA
Statistics
Matches: 112, Mismatches: 11, Indels: 7
0.86 0.08 0.05
Matches are distributed among these distances:
130 54 0.48
131 58 0.52
ACGTcount: A:0.34, C:0.12, G:0.25, T:0.28
Consensus pattern (130 bp):
GGTTGGAGTATCCCCGATGGTGGAAAATCAATATTTTAGAAATAAAACTAAGGTTGGAGTATCCC
CTCGAAAATAACGAGGTTAGAGTATCCTCGATGGTGAAAAAATGCTATTTTAGAAATAAAACTGA
Found at i:33661 original size:21 final size:21
Alignment explanation
Indices: 33628--33672 Score: 56
Period size: 21 Copynumber: 2.1 Consensus size: 21
33618 TTGCAAGTTG
*
33628 AAATAAAGAAGTTGGCTAATGA
1 AAATAAAGAAGTTAGCTAA-GA
*
33650 AAATAATG-AGTTAGCTAAGA
1 AAATAAAGAAGTTAGCTAAGA
33670 AAA
1 AAA
33673 ATGAAAACTT
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
20 5 0.24
21 9 0.43
22 7 0.33
ACGTcount: A:0.53, C:0.04, G:0.20, T:0.22
Consensus pattern (21 bp):
AAATAAAGAAGTTAGCTAAGA
Found at i:37602 original size:13 final size:13
Alignment explanation
Indices: 37584--37620 Score: 74
Period size: 13 Copynumber: 2.8 Consensus size: 13
37574 ACATTTTTCT
37584 TTGTATCGATACA
1 TTGTATCGATACA
37597 TTGTATCGATACA
1 TTGTATCGATACA
37610 TTGTATCGATA
1 TTGTATCGATA
37621 TAGGGTGATT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 24 1.00
ACGTcount: A:0.30, C:0.14, G:0.16, T:0.41
Consensus pattern (13 bp):
TTGTATCGATACA
Found at i:39425 original size:21 final size:21
Alignment explanation
Indices: 39399--39442 Score: 63
Period size: 21 Copynumber: 2.1 Consensus size: 21
39389 TTTTTGATAT
*
39399 GAATTACTTGATTAA-GGGGGA
1 GAATTA-TTAATTAACGGGGGA
39420 GAATTATTAATTAACGGGGGA
1 GAATTATTAATTAACGGGGGA
39441 GA
1 GA
39443 TAAAGGAGAG
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
20 7 0.33
21 14 0.67
ACGTcount: A:0.36, C:0.05, G:0.32, T:0.27
Consensus pattern (21 bp):
GAATTATTAATTAACGGGGGA
Found at i:39438 original size:20 final size:21
Alignment explanation
Indices: 39399--39438 Score: 55
Period size: 20 Copynumber: 2.0 Consensus size: 21
39389 TTTTTGATAT
* *
39399 GAATTACTTGATTAAGGGGGA
1 GAATTACTTAATTAACGGGGA
39420 GAATTA-TTAATTAACGGGG
1 GAATTACTTAATTAACGGGG
39439 GAGATAAAGG
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
20 11 0.65
21 6 0.35
ACGTcount: A:0.35, C:0.05, G:0.30, T:0.30
Consensus pattern (21 bp):
GAATTACTTAATTAACGGGGA
Found at i:39509 original size:86 final size:86
Alignment explanation
Indices: 39410--39585 Score: 343
Period size: 86 Copynumber: 2.0 Consensus size: 86
39400 AATTACTTGA
*
39410 TTAAGGGGGAGAATTATTAATTAACGGGGGAGATAAAGGAGAGAATGCGTGAATTACCTTATTAA
1 TTAAGGGGGAGAATTATTAATAAACGGGGGAGATAAAGGAGAGAATGCGTGAATTACCTTATTAA
39475 GGGGGAGAATGTACAAATTCG
66 GGGGGAGAATGTACAAATTCG
39496 TTAAGGGGGAGAATTATTAATAAACGGGGGAGATAAAGGAGAGAATGCGTGAATTACCTTATTAA
1 TTAAGGGGGAGAATTATTAATAAACGGGGGAGATAAAGGAGAGAATGCGTGAATTACCTTATTAA
39561 GGGGGAGAATGTACAAATTCG
66 GGGGGAGAATGTACAAATTCG
39582 TTAA
1 TTAA
39586 ATTTATTTTG
Statistics
Matches: 89, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
86 89 1.00
ACGTcount: A:0.38, C:0.07, G:0.31, T:0.24
Consensus pattern (86 bp):
TTAAGGGGGAGAATTATTAATAAACGGGGGAGATAAAGGAGAGAATGCGTGAATTACCTTATTAA
GGGGGAGAATGTACAAATTCG
Found at i:40249 original size:13 final size:13
Alignment explanation
Indices: 40231--40256 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
40221 TACAGCAAGT
40231 ATGTATCGATACA
1 ATGTATCGATACA
40244 ATGTATCGATACA
1 ATGTATCGATACA
40257 CAAAAAATTG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.38, C:0.15, G:0.15, T:0.31
Consensus pattern (13 bp):
ATGTATCGATACA
Found at i:44053 original size:21 final size:20
Alignment explanation
Indices: 44007--44055 Score: 80
Period size: 20 Copynumber: 2.4 Consensus size: 20
43997 AGAGAATAGA
44007 TGTATGTGCAAATAAATTTT
1 TGTATGTGCAAATAAATTTT
*
44027 TGTATGTGCGAATAAATTTT
1 TGTATGTGCAAATAAATTTT
44047 TGATATGTG
1 TG-TATGTG
44056 TGTAAATTAT
Statistics
Matches: 27, Mismatches: 1, Indels: 1
0.93 0.03 0.03
Matches are distributed among these distances:
20 21 0.78
21 6 0.22
ACGTcount: A:0.31, C:0.04, G:0.20, T:0.45
Consensus pattern (20 bp):
TGTATGTGCAAATAAATTTT
Found at i:44824 original size:13 final size:13
Alignment explanation
Indices: 44806--44844 Score: 78
Period size: 13 Copynumber: 3.0 Consensus size: 13
44796 TACACAAAGT
44806 ATGTATCGATACA
1 ATGTATCGATACA
44819 ATGTATCGATACA
1 ATGTATCGATACA
44832 ATGTATCGATACA
1 ATGTATCGATACA
44845 CAAAAAATTG
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 26 1.00
ACGTcount: A:0.38, C:0.15, G:0.15, T:0.31
Consensus pattern (13 bp):
ATGTATCGATACA
Found at i:51450 original size:49 final size:49
Alignment explanation
Indices: 51284--51915 Score: 478
Period size: 49 Copynumber: 12.8 Consensus size: 49
51274 GAAGAATGAT
* * * * *
51284 AATGTGTTGATTCATGGCCAGCGACATTAGACTTGAAGATGAGAAGAATGCC
1 AATGTGCTGATTCAAGGCCAACGACATTGGACTTAAAGATGA-AAG--TGCC
* ** *
51336 AATGTGCTAATTCAAGGCCAACGACATTGGGTTTAGGAATG-TTAAAGATGCC
1 AATGTGCTGATTCAAGGCCAACGACATTGGACTTA--AA-GATGAAAG-TGCC
** * * *
51388 AATACGTTGATTCAAGGCCAACGATATCGGACTTAAAGATGAAAGTGCC
1 AATGTGCTGATTCAAGGCCAACGACATTGGACTTAAAGATGAAAGTGCC
* * ** *
51437 AATATGCTGATTCAAGGCCAGCGACATTGGTTTTAAAGATGACGAAGGCGCC
1 AATGTGCTGATTCAAGGCCAACGACATTGGACTTAAAGATGA--AA-GTGCC
* * * * *
51489 AATATGCTGATTCAAGGCCAGCGATATGGGACTTAAAGATGAAGGTGCC
1 AATGTGCTGATTCAAGGCCAACGACATTGGACTTAAAGATGAAAGTGCC
* * * *
51538 AATGTGCTGATTCAAGTCCAGCAACATTGGACTTAAAGGT-AAAGGTGCC
1 AATGTGCTGATTCAAGGCCAACGACATTGGACTTAAAGATGAAA-GTGCC
** * * **
51587 AATGTGCTGATTCAAGGCCAATAACAGTGGACTTAAAGGTGAGGGTGCC
1 AATGTGCTGATTCAAGGCCAACGACATTGGACTTAAAGATGAAAGTGCC
* * * * **
51636 AATGTGCTGATTCAAGGCCAATGATATTGGACTTATAGGTGAGGGTGCC
1 AATGTGCTGATTCAAGGCCAACGACATTGGACTTAAAGATGAAAGTGCC
* * *
51685 AATGTGATGATTCAAGGCCAGCGACATTAGG-CTTAGGAATG-TTAAAGATGCC
1 AATGTGCTGATTCAAGGCCAACGACATT-GGACTTA--AA-GATGAAAG-TGCC
* * * * *
51737 AATATGCTGATTCAAGGCCAACGATATCGGACCTAAAGAT-AAAGATACC
1 AATGTGCTGATTCAAGGCCAACGACATTGGACTTAAAGATGAAAG-TGCC
* *
51786 AATGTGTTGATTCAAGGCCGACGACATTGGACTT-AA-A-G---GTGCC
1 AATGTGCTGATTCAAGGCCAACGACATTGGACTTAAAGATGAAAGTGCC
* * * * *
51829 AATATGCTAATTCAAGGCCAGCGATATTGGATTTAAAGATG-AAGATGCC
1 AATGTGCTGATTCAAGGCCAACGACATTGGACTTAAAGATGAAAG-TGCC
* *** *
51878 AATGTCCTGATTCAAGGCTGGCGACATTGAACTTAAAG
1 AATGTGCTGATTCAAGGCCAACGACATTGGACTTAAAG
51916 GTGCCATGGA
Statistics
Matches: 471, Mismatches: 86, Indels: 49
0.78 0.14 0.08
Matches are distributed among these distances:
43 30 0.06
44 3 0.01
45 1 0.00
46 1 0.00
47 1 0.00
48 5 0.01
49 268 0.57
50 14 0.03
51 8 0.02
52 132 0.28
53 3 0.01
54 4 0.01
55 1 0.00
ACGTcount: A:0.33, C:0.17, G:0.26, T:0.25
Consensus pattern (49 bp):
AATGTGCTGATTCAAGGCCAACGACATTGGACTTAAAGATGAAAGTGCC
Found at i:51490 original size:101 final size:98
Alignment explanation
Indices: 51291--51895 Score: 444
Period size: 101 Copynumber: 6.1 Consensus size: 98
51281 GATAATGTGT
* * * * *
51291 TGATTCATGGCCAGCGACATTAGACTTGAAGATGAGAAGAATGCCAATGTGCTAATTCAAGGCCA
1 TGATTCAAGGCCAACGACA-TGGACTTAAAGATGA-AAG--TGCCAATGTGCTGATTCAAGGCCA
* * * * * *
51356 ACGACATTGGGTTTAGGAATG-TTAAAGATGCCAATACGT
62 GCGACATTGGATTTA--AA-GATGAAAGGTGCCAATATGC
* *
51395 TGATTCAAGGCCAACGATATCGGACTTAAAGATGAAAGTGCCAATATGCTGATTCAAGGCCAGCG
1 TGATTCAAGGCCAACGACAT-GGACTTAAAGATGAAAGTGCCAATGTGCTGATTCAAGGCCAGCG
* *
51460 ACATTGGTTTTAAAGATGACGAAGGCGCCAATATGC
65 ACATTGGATTTAAAGATGA--AAGGTGCCAATATGC
* * * * *
51496 TGATTCAAGGCCAGCGATATGGGACTTAAAGATGAAGGTGCCAATGTGCTGATTCAAGTCCAGCA
1 TGATTCAAGGCCAACGACAT-GGACTTAAAGATGAAAGTGCCAATGTGCTGATTCAAGGCCAGCG
* * *
51561 ACATTGGACTTAAAGGT-AAAGGTGCCAATGTGC
65 ACATTGGATTTAAAGATGAAAGGTGCCAATATGC
** * ** **
51594 TGATTCAAGGCCAATAACAGTGGACTTAAAGGTGAGGGTGCCAATGTGCTGATTCAAGGCCAATG
1 TGATTCAAGGCCAACGACA-TGGACTTAAAGATGAAAGTGCCAATGTGCTGATTCAAGGCCAGCG
* * * * * * *
51659 ATATTGGACTTATAGGTG-AGGGTGCCAATGTGA
65 ACATTGGATTTAAAGATGAAAGGTGCCAATATGC
* * *
51692 TGATTCAAGGCCAGCGACATTAGG-CTTAGGAATG-TTAAAGATGCCAATATGCTGATTCAAGGC
1 TGATTCAAGGCCAACGACA-T-GGACTTA--AA-GATGAAAG-TGCCAATGTGCTGATTCAAGGC
* * * ** * * * *
51755 CAACGATATCGGACCTAAAGAT-AAAGATACCAATGTGT
60 CAGCGACATTGGATTTAAAGATGAAAGGTGCCAATATGC
* * *
51793 TGATTCAAGGCCGACGACATTGGACTT-AA-A-G---GTGCCAATATGCTAATTCAAGGCCAGCG
1 TGATTCAAGGCCAACGACA-TGGACTTAAAGATGAAAGTGCCAATGTGCTGATTCAAGGCCAGCG
* * * *
51852 ATATTGGATTTAAAGATG-AAGATGCCAATGTCC
65 ACATTGGATTTAAAGATGAAAGGTGCCAATATGC
51885 TGATTCAAGGC
1 TGATTCAAGGC
51896 TGGCGACATT
Statistics
Matches: 419, Mismatches: 67, Indels: 42
0.79 0.13 0.08
Matches are distributed among these distances:
92 62 0.15
93 1 0.00
98 118 0.28
99 7 0.02
100 8 0.02
101 191 0.46
103 4 0.01
104 28 0.07
ACGTcount: A:0.33, C:0.17, G:0.26, T:0.24
Consensus pattern (98 bp):
TGATTCAAGGCCAACGACATGGACTTAAAGATGAAAGTGCCAATGTGCTGATTCAAGGCCAGCGA
CATTGGATTTAAAGATGAAAGGTGCCAATATGC
Found at i:51600 original size:150 final size:148
Alignment explanation
Indices: 51416--51895 Score: 406
Period size: 150 Copynumber: 3.3 Consensus size: 148
51406 CAACGATATC
* * * **
51416 GGACTTAAAGATGAAA-GTGCCAATATGCTGATTCAAGGCCAGCGACATTGGTTTTAAAGATGAC
1 GGACTTAAAGAT-AAAGGTGCCAATATGCTGATTCAAGGCCAACAACAGTGGACTTAAAGATGA-
* *
51480 GAAGGCGCCAATATGCTGATTCAAGGCCAGCGATATGGGACTTAAAGATGAAGGTGCCAATGTGC
64 G--GGCGCCAATATGCTGATTCAAGGCCAACGATATGGGACTTAAAGATGAAGGTGCCAATGTGA
*
51545 TGATTCAAGTCCAGCAACATT-
127 TGATTCAAGGCCAGCAACATTA
* * * *
51566 GGACTTAAAGGTAAAGGTGCCAATGTGCTGATTCAAGGCCAATAACAGTGGACTTAAAGGTGAGG
1 GGACTTAAAGATAAAGGTGCCAATATGCTGATTCAAGGCCAACAACAGTGGACTTAAAGATGAGG
* * * * * * *
51631 GTGCCAATGTGCTGATTCAAGGCCAATGATATTGGACTTATAGGTGAGGGTGCCAATGTGATGAT
66 GCGCCAATATGCTGATTCAAGGCCAACGATATGGGACTTAAAGATGAAGGTGCCAATGTGATGAT
*
51696 TCAAGGCCAGCGACATTA
131 TCAAGGCCAGCAACATTA
* * * * *
51714 GG-CTTAGGAATGTTAAAGATGCCAATATGCTGATTCAAGGCCAACGATA-TCGGACCTAAAGAT
1 GGACTTA--AA-GATAAAGGTGCCAATATGCTGATTCAAGGCCAACAACAGT-GGACTTAAAGAT
* * *** * * * * * * *
51777 AAAGATACCAATGTGTTGATTCAAGGCCGACGACATTGGACTT----A--AAGGTGCCAATATGC
62 GAGGGCGCCAATATGCTGATTCAAGGCCAACGATATGGGACTTAAAGATGAAGGTGCCAATGTGA
* * *
51836 TAATTCAAGGCCAGCGATATT-
127 TGATTCAAGGCCAGCAACATTA
* * * * *
51857 GGATTTAAAGATGAAGATGCCAATGTCCTGATTCAAGGC
1 GGACTTAAAGATAAAGGTGCCAATATGCTGATTCAAGGC
51896 TGGCGACATT
Statistics
Matches: 276, Mismatches: 47, Indels: 23
0.80 0.14 0.07
Matches are distributed among these distances:
141 26 0.09
142 2 0.01
143 2 0.01
144 34 0.12
147 76 0.28
148 2 0.01
149 7 0.03
150 127 0.46
ACGTcount: A:0.33, C:0.17, G:0.26, T:0.24
Consensus pattern (148 bp):
GGACTTAAAGATAAAGGTGCCAATATGCTGATTCAAGGCCAACAACAGTGGACTTAAAGATGAGG
GCGCCAATATGCTGATTCAAGGCCAACGATATGGGACTTAAAGATGAAGGTGCCAATGTGATGAT
TCAAGGCCAGCAACATTA
Found at i:51889 original size:92 final size:92
Alignment explanation
Indices: 51726--51921 Score: 275
Period size: 92 Copynumber: 2.1 Consensus size: 92
51716 CTTAGGAATG
* *
51726 TTAAAGATGCCAATATGCTGATTCAAGGCCAACGATATCGGACCTAAAGATAAAGATACCAATGT
1 TTAAAGGTGCCAATATGCTAATTCAAGGCCAACGATATCGGACCTAAAGATAAAGATACCAATGT
** *
51791 GTTGATTCAAGGCCGACGACATTGGAC
66 CCTGATTCAAGGCCGACGACATTGAAC
* * ** * *
51818 TTAAAGGTGCCAATATGCTAATTCAAGGCCAGCGATATTGGATTTAAAGATGAAGATGCCAATGT
1 TTAAAGGTGCCAATATGCTAATTCAAGGCCAACGATATCGGACCTAAAGATAAAGATACCAATGT
* *
51883 CCTGATTCAAGGCTGGCGACATTGAAC
66 CCTGATTCAAGGCCGACGACATTGAAC
51910 TTAAAGGTGCCA
1 TTAAAGGTGCCA
51922 TGGAGTTGTG
Statistics
Matches: 91, Mismatches: 13, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
92 91 1.00
ACGTcount: A:0.34, C:0.18, G:0.23, T:0.24
Consensus pattern (92 bp):
TTAAAGGTGCCAATATGCTAATTCAAGGCCAACGATATCGGACCTAAAGATAAAGATACCAATGT
CCTGATTCAAGGCCGACGACATTGAAC
Found at i:51989 original size:33 final size:27
Alignment explanation
Indices: 51908--52023 Score: 137
Period size: 27 Copynumber: 4.1 Consensus size: 27
51898 GCGACATTGA
*
51908 ACTT-AAA-GGTGCCATGGAGTTGTGG
1 ACTTAAAAGGGTGCCACGGAGTTGTGG
**
51933 ACTTAAAAGGGTGCCACAAAGTTGTGG
1 ACTTAAAAGGGTGCCACGGAGTTGTGG
51960 ACTTAAAAGGAACAAGGTGCCACGGAGTTGTGG
1 ACTTAAAA-G-----GGTGCCACGGAGTTGTGG
51993 ACTTAAAAGGGTGCCACGGAGTTGTGG
1 ACTTAAAAGGGTGCCACGGAGTTGTGG
52020 ACTT
1 ACTT
52024 TTGAAGGTTG
Statistics
Matches: 78, Mismatches: 5, Indels: 14
0.80 0.05 0.14
Matches are distributed among these distances:
25 4 0.05
26 3 0.04
27 45 0.58
28 1 0.01
32 1 0.01
33 24 0.31
ACGTcount: A:0.29, C:0.15, G:0.33, T:0.23
Consensus pattern (27 bp):
ACTTAAAAGGGTGCCACGGAGTTGTGG
Found at i:52045 original size:28 final size:28
Alignment explanation
Indices: 51999--52167 Score: 176
Period size: 28 Copynumber: 5.9 Consensus size: 28
51989 GTGGACTTAA
* * * *
51999 AAGGGTGCCACGGAGTTGTGGACTTTTG
1 AAGGTTGCCACTGACTTGTGGGCTTTTG
*
52027 AAGGTTGCCACTGACTTGTGGGCTTTGG
1 AAGGTTGCCACTGACTTGTGGGCTTTTG
* * *
52055 AAAAGATGCCACAGACTTGTGGGCTTTTG
1 -AAGGTTGCCACTGACTTGTGGGCTTTTG
* * * *
52084 AAGGTTACCGCTTACTTGTGGGCTTTGG
1 AAGGTTGCCACTGACTTGTGGGCTTTTG
* * *
52112 AAAAGATGCCACTGACTTGTGGGCTTTTA
1 -AAGGTTGCCACTGACTTGTGGGCTTTTG
52141 AAGGTTGCCACTGACTTGTGGGGCTTT
1 AAGGTTGCCACTGACTTGT-GGGCTTT
52168 GGAAAAGGTG
Statistics
Matches: 113, Mismatches: 25, Indels: 5
0.79 0.17 0.03
Matches are distributed among these distances:
28 61 0.54
29 52 0.46
ACGTcount: A:0.20, C:0.17, G:0.32, T:0.31
Consensus pattern (28 bp):
AAGGTTGCCACTGACTTGTGGGCTTTTG
Found at i:52071 original size:29 final size:29
Alignment explanation
Indices: 52032--52174 Score: 173
Period size: 29 Copynumber: 5.0 Consensus size: 29
52022 TTTTGAAGGT
52032 TGCCACTGACTTGTGGGCTTTGGAAAAGA
1 TGCCACTGACTTGTGGGCTTTGGAAAAGA
* * * *
52061 TGCCACAGACTTGTGGGCTTTTG-AAGGT
1 TGCCACTGACTTGTGGGCTTTGGAAAAGA
* * *
52089 TACCGCTTACTTGTGGGCTTTGGAAAAGA
1 TGCCACTGACTTGTGGGCTTTGGAAAAGA
* * *
52118 TGCCACTGACTTGTGGGCTTT-TAAAGGT
1 TGCCACTGACTTGTGGGCTTTGGAAAAGA
52146 TGCCACTGACTTGTGGGGCTTTGGAAAAG
1 TGCCACTGACTTGT-GGGCTTTGGAAAAG
52175 GTGAGGAATG
Statistics
Matches: 92, Mismatches: 19, Indels: 5
0.79 0.16 0.04
Matches are distributed among these distances:
28 39 0.42
29 49 0.53
30 4 0.04
ACGTcount: A:0.21, C:0.17, G:0.31, T:0.31
Consensus pattern (29 bp):
TGCCACTGACTTGTGGGCTTTGGAAAAGA
Found at i:52076 original size:57 final size:57
Alignment explanation
Indices: 52004--52174 Score: 261
Period size: 57 Copynumber: 3.0 Consensus size: 57
51994 CTTAAAAGGG
* * *
52004 TGCCACGGAGTTGTGGACTTTTGAAGGTTGCCACTGACTTGTGGGCTTTGGAAAAGA
1 TGCCACAGACTTGTGGGCTTTTGAAGGTTGCCACTGACTTGTGGGCTTTGGAAAAGA
* * *
52061 TGCCACAGACTTGTGGGCTTTTGAAGGTTACCGCTTACTTGTGGGCTTTGGAAAAGA
1 TGCCACAGACTTGTGGGCTTTTGAAGGTTGCCACTGACTTGTGGGCTTTGGAAAAGA
* *
52118 TGCCACTGACTTGTGGGCTTTTAAAGGTTGCCACTGACTTGTGGGGCTTTGGAAAAG
1 TGCCACAGACTTGTGGGCTTTTGAAGGTTGCCACTGACTTGT-GGGCTTTGGAAAAG
52175 GTGAGGAATG
Statistics
Matches: 102, Mismatches: 11, Indels: 1
0.89 0.10 0.01
Matches are distributed among these distances:
57 88 0.86
58 14 0.14
ACGTcount: A:0.20, C:0.17, G:0.32, T:0.31
Consensus pattern (57 bp):
TGCCACAGACTTGTGGGCTTTTGAAGGTTGCCACTGACTTGTGGGCTTTGGAAAAGA
Found at i:53621 original size:12 final size:11
Alignment explanation
Indices: 53604--53650 Score: 60
Period size: 12 Copynumber: 4.2 Consensus size: 11
53594 TCATCCGAAA
53604 TTTTTTGTTGTT
1 TTTTTTGTT-TT
*
53616 TTTTTTGTCTCT
1 TTTTTTGT-TTT
53628 TTTTTTGTTTT
1 TTTTTTGTTTT
53639 TTTTTT-TTTT
1 TTTTTTGTTTT
53649 TT
1 TT
53651 GCGGAGGACG
Statistics
Matches: 32, Mismatches: 2, Indels: 4
0.84 0.05 0.11
Matches are distributed among these distances:
10 6 0.19
11 8 0.25
12 17 0.53
13 1 0.03
ACGTcount: A:0.00, C:0.04, G:0.09, T:0.87
Consensus pattern (11 bp):
TTTTTTGTTTT
Found at i:67566 original size:13 final size:13
Alignment explanation
Indices: 67548--67575 Score: 56
Period size: 13 Copynumber: 2.2 Consensus size: 13
67538 TACAAAAGAT
67548 CAATGTATCGATA
1 CAATGTATCGATA
67561 CAATGTATCGATA
1 CAATGTATCGATA
67574 CA
1 CA
67576 TTGAGTAATG
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 15 1.00
ACGTcount: A:0.39, C:0.18, G:0.14, T:0.29
Consensus pattern (13 bp):
CAATGTATCGATA
Found at i:70886 original size:79 final size:79
Alignment explanation
Indices: 70437--70980 Score: 439
Period size: 79 Copynumber: 6.9 Consensus size: 79
70427 ATAAAAATAG
** *** * * * *
70437 GGTTGGAGTATCCCCTCGAAAATAATGGGGTTGGAATGTCCCCGATGGTGGAAAATC-AGTGTTT
1 GGTTGGAGTATCCCCTTAAAAATAACAAGGTTGGAGTATCCTCGATGGTGGAAAATCGA-TATTT
*
70501 TAAAAATAAAATCG-
65 TAAGAATAAAATCGA
* * ** ** * * *
70515 GGTTTAGAGTATCTCCTCGAAAATAATGAGGTTGTAGTGTCCTCGATGGTGGAAAATCGATGTTT
1 GG-TTGGAGTATCCCCTTAAAAATAACAAGGTTGGAGTATCCTCGATGGTGGAAAATCGATATTT
70580 T-AGAAATAAAATCGA
65 TAAG-AATAAAATCGA
** * * ** * * ** * * * *
70595 ATTTAGAATATCCCCTCGAAAATAAC-GGAGTTGAAGTGCCCCCGATAGTGGAAAATCGGTGTTT
1 GGTTGGAGTATCCCCTTAAAAATAACAAG-GTTGGAGTATCCTCGATGGTGGAAAATCGATATTT
*
70659 T-AGAAATAAAA-CTA
65 TAAG-AATAAAATCGA
* * *
70673 GGTTGGAGTATCCCCTTGAAAATAAC-AGAGTTGGAGTATCCTCAATGGTGGAAAATC-AGTGTT
1 GGTTGGAGTATCCCCTTAAAAATAACAAG-GTTGGAGTATCCTCGATGGTGGAAAATCGA-TATT
*
70736 TTAGGAATAAAATC-A
64 TTAAGAATAAAATCGA
* * * *
70751 GG-TGGAGTATCCCATTGAAAATAACAAGGTTGGAGTATCCTCGATAGTAGAAAATCGATATTTT
1 GGTTGGAGTATCCCCTTAAAAATAACAAGGTTGGAGTATCCTCGATGGTGGAAAATCGATATTTT
70815 AAGAATAAAATCGA
66 AAGAATAAAATCGA
* * * *
70829 GGTTGAAGTATCCCCTTAAAAACAATAAGGTTGGAGTAT-CTCTGATGGTGGAGAATCGATATTT
1 GGTTGGAGTATCCCCTTAAAAATAACAAGGTTGGAGTATCCTC-GATGGTGGAAAATCGATATTT
*
70893 T-AGAAATAAAATTGA
65 TAAG-AATAAAATCGA
** * *
70908 GGTTGGAGTATCCCCAAAAAAATAACAGGGTTGGAGTATCC-CTGATGGTGAAAAATCGATATTT
1 GGTTGGAGTATCCCCTTAAAAATAACAAGGTTGGAGTATCCTC-GATGGTGGAAAATCGATATTT
*
70972 TAAAAATAA
65 TAAGAATAA
70981 GAACATCAAT
Statistics
Matches: 393, Mismatches: 57, Indels: 31
0.82 0.12 0.06
Matches are distributed among these distances:
77 63 0.16
78 78 0.20
79 249 0.63
80 3 0.01
ACGTcount: A:0.36, C:0.13, G:0.23, T:0.28
Consensus pattern (79 bp):
GGTTGGAGTATCCCCTTAAAAATAACAAGGTTGGAGTATCCTCGATGGTGGAAAATCGATATTTT
AAGAATAAAATCGA
Found at i:70980 original size:158 final size:158
Alignment explanation
Indices: 70437--70980 Score: 534
Period size: 158 Copynumber: 3.5 Consensus size: 158
70427 ATAAAAATAG
* ** * * * * *
70437 GGTTGGAGTATCCCCTCGAAAATAATGGGGTTGGAATGTCCCCGATGGTGGAAAATC-AGTGTTT
1 GGTTGGAGTATCCCCACGAAAATAACAGGGTTGGAGTATCCCCGATAGTGAAAAATCGA-TATTT
* * * * * *
70501 TAAAAATAAAATCG-GGTTTAGAGTATCTCCTCGAAAATAATGAGGTTGTAGTGTCCTCGATGGT
65 TAAAAATAAAATCGAGGTTGA-AGTATCCCCTTGAAAATAATAAGGTTGGAGTATCCTCGATGGT
*
70565 GGAAAATCGATGTTTTAGAAATAAAATCGA
129 GGAAAATCGATGTTTTAGAAATAAAATTGA
** * * * * ** * * *
70595 ATTTAGAATATCCCCTCGAAAATAAC-GGAGTTGAAGTGCCCCCGATAGTGGAAAATCGGTGTTT
1 GGTTGGAGTATCCCCACGAAAATAACAGG-GTTGGAGTATCCCCGATAGTGAAAAATCGATATTT
* * * * *
70659 TAGAAATAAAA-CTAGGTTGGAGTATCCCCTTGAAAATAA-CAGAGTTGGAGTATCCTCAATGGT
65 TAAAAATAAAATCGAGGTTGAAGTATCCCCTTGAAAATAATAAG-GTTGGAGTATCCTCGATGGT
* *
70722 GGAAAATC-AGTGTTTTAGGAATAAAA-TCA
129 GGAAAATCGA-TGTTTTAGAAATAAAATTGA
* * *
70751 GG-TGGAGTAT-CCCATTGAAAATAACAAGGTTGGAGTATCCTCGATAGT-AGAAAATCGATATT
1 GGTTGGAGTATCCCCA-CGAAAATAACAGGGTTGGAGTATCCCCGATAGTGA-AAAATCGATATT
* * *
70813 TTAAGAATAAAATCGAGGTTGAAGTATCCCCTTAAAAACAATAAGGTTGGAGTAT-CTCTGATGG
64 TTAAAAATAAAATCGAGGTTGAAGTATCCCCTTGAAAATAATAAGGTTGGAGTATCCTC-GATGG
* *
70877 TGGAGAATCGATATTTTAGAAATAAAATTGA
128 TGGAAAATCGATGTTTTAGAAATAAAATTGA
** * *
70908 GGTTGGAGTATCCCCAAAAAAATAACAGGGTTGGAGTATCCCTGATGGTGAAAAATCGATATTTT
1 GGTTGGAGTATCCCCACGAAAATAACAGGGTTGGAGTATCCCCGATAGTGAAAAATCGATATTTT
70973 AAAAATAA
66 AAAAATAA
70981 GAACATCAAT
Statistics
Matches: 314, Mismatches: 56, Indels: 32
0.78 0.14 0.08
Matches are distributed among these distances:
154 3 0.01
155 54 0.17
156 65 0.21
157 67 0.21
158 120 0.38
159 5 0.02
ACGTcount: A:0.36, C:0.13, G:0.23, T:0.28
Consensus pattern (158 bp):
GGTTGGAGTATCCCCACGAAAATAACAGGGTTGGAGTATCCCCGATAGTGAAAAATCGATATTTT
AAAAATAAAATCGAGGTTGAAGTATCCCCTTGAAAATAATAAGGTTGGAGTATCCTCGATGGTGG
AAAATCGATGTTTTAGAAATAAAATTGA
Found at i:72611 original size:13 final size:13
Alignment explanation
Indices: 72593--72617 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
72583 ATATAAGTGG
72593 TGTATCGATACAA
1 TGTATCGATACAA
72606 TGTATCGATACA
1 TGTATCGATACA
72618 TAAGTATTGT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.36, C:0.16, G:0.16, T:0.32
Consensus pattern (13 bp):
TGTATCGATACAA
Found at i:72615 original size:32 final size:32
Alignment explanation
Indices: 72574--72713 Score: 108
Period size: 32 Copynumber: 4.4 Consensus size: 32
72564 AAACAGTAAT
* *
72574 TGTATCGATATATAAGTGGTGTATCGATACAA
1 TGTATCGATACATAAGTAGTGTATCGATACAA
* *
72606 TGTATCGATACATAAGTATTGTATCGATATAA
1 TGTATCGATACATAAGTAGTGTATCGATACAA
* * * * *
72638 TGTATCGCTAC-GAAGCTACTGCTA-AG-GA-AA
1 TGTATCGATACATAAG-TAGTG-TATCGATACAA
* * * *
72668 TGTATCGATACATTACTCAATGTATCGATACAT
1 TGTATCGATACATAAGT-AGTGTATCGATACAA
72701 TGTATCGATACAT
1 TGTATCGATACAT
72714 TGATCTTTGT
Statistics
Matches: 84, Mismatches: 17, Indels: 13
0.74 0.15 0.11
Matches are distributed among these distances:
30 15 0.18
31 9 0.11
32 44 0.52
33 16 0.19
ACGTcount: A:0.34, C:0.14, G:0.18, T:0.34
Consensus pattern (32 bp):
TGTATCGATACATAAGTAGTGTATCGATACAA
Found at i:72630 original size:19 final size:19
Alignment explanation
Indices: 72552--72634 Score: 70
Period size: 19 Copynumber: 4.6 Consensus size: 19
72542 TTTCAACAAT
*
72552 TTGTATCGATACAAACAGTAA
1 TTGTATCGATACATA-AGT-A
* *
72573 TTGTATCGATATATAAGTG
1 TTGTATCGATACATAAGTA
*
72592 GTGTATCGATAC---A--A
1 TTGTATCGATACATAAGTA
72606 -TGTATCGATACATAAGTA
1 TTGTATCGATACATAAGTA
72624 TTGTATCGATA
1 TTGTATCGATA
72635 TAATGTATCG
Statistics
Matches: 50, Mismatches: 6, Indels: 14
0.71 0.09 0.20
Matches are distributed among these distances:
13 11 0.22
16 2 0.04
18 1 0.02
19 20 0.40
20 3 0.06
21 13 0.26
ACGTcount: A:0.36, C:0.11, G:0.18, T:0.35
Consensus pattern (19 bp):
TTGTATCGATACATAAGTA
Found at i:72706 original size:13 final size:13
Alignment explanation
Indices: 72688--72715 Score: 56
Period size: 13 Copynumber: 2.2 Consensus size: 13
72678 CATTACTCAA
72688 TGTATCGATACAT
1 TGTATCGATACAT
72701 TGTATCGATACAT
1 TGTATCGATACAT
72714 TG
1 TG
72716 ATCTTTGTAT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 15 1.00
ACGTcount: A:0.29, C:0.14, G:0.18, T:0.39
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:72710 original size:33 final size:33
Alignment explanation
Indices: 72668--72733 Score: 98
Period size: 33 Copynumber: 2.0 Consensus size: 33
72658 GCTAAGGAAA
72668 TGTATCGATACATT-ACTCAATGTATCGATACAT
1 TGTATCGATACATTGA-TCAATGTATCGATACAT
**
72701 TGTATCGATACATTGATCTTTGTATCGATACAT
1 TGTATCGATACATTGATCAATGTATCGATACAT
72734 CTAGGAAATT
Statistics
Matches: 30, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
33 29 0.97
34 1 0.03
ACGTcount: A:0.30, C:0.17, G:0.14, T:0.39
Consensus pattern (33 bp):
TGTATCGATACATTGATCAATGTATCGATACAT
Found at i:77040 original size:51 final size:51
Alignment explanation
Indices: 76919--77043 Score: 169
Period size: 51 Copynumber: 2.5 Consensus size: 51
76909 GAATGTTTCA
* * ** * * *
76919 ATACATTGATAAATGTATTAATACATCTGGGTTAAAACCCAGAATGTATTG
1 ATACAATGAAAAATGTATCGATACATCTCGGTTAAAACCCAGAATATATCG
* *
76970 ATACAATGAAAAAAGTATCGATACATCTCGGTTAAAACTCAGAATATATCG
1 ATACAATGAAAAATGTATCGATACATCTCGGTTAAAACCCAGAATATATCG
77021 ATACAATGAAAAATGTATCGATA
1 ATACAATGAAAAATGTATCGATA
77044 TAAACAATAA
Statistics
Matches: 64, Mismatches: 10, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
51 64 1.00
ACGTcount: A:0.44, C:0.13, G:0.14, T:0.29
Consensus pattern (51 bp):
ATACAATGAAAAATGTATCGATACATCTCGGTTAAAACCCAGAATATATCG
Found at i:77041 original size:20 final size:21
Alignment explanation
Indices: 77016--77066 Score: 68
Period size: 21 Copynumber: 2.5 Consensus size: 21
77006 ACTCAGAATA
**
77016 TATCGATACAATGAA-AAATG
1 TATCGATACAAACAATAAATG
*
77036 TATCGATATAAACAATAAATG
1 TATCGATACAAACAATAAATG
77057 TATCGATACA
1 TATCGATACA
77067 TTTACTTATG
Statistics
Matches: 26, Mismatches: 4, Indels: 1
0.84 0.13 0.03
Matches are distributed among these distances:
20 12 0.46
21 14 0.54
ACGTcount: A:0.49, C:0.12, G:0.12, T:0.27
Consensus pattern (21 bp):
TATCGATACAAACAATAAATG
Found at i:80329 original size:32 final size:32
Alignment explanation
Indices: 80288--80375 Score: 131
Period size: 32 Copynumber: 2.8 Consensus size: 32
80278 ATTACTATCT
* *
80288 ATCACTGTTCATGTATCAATACATCACTGTTC
1 ATCATTGTTCATGTATCGATACATCACTGTTC
* *
80320 ATCATTGTTCATGTATCGATACATCGCTGTTG
1 ATCATTGTTCATGTATCGATACATCACTGTTC
*
80352 ATCGTTGTTCATGTATCGATACAT
1 ATCATTGTTCATGTATCGATACAT
80376 GTGAATAGTA
Statistics
Matches: 51, Mismatches: 5, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
32 51 1.00
ACGTcount: A:0.25, C:0.20, G:0.15, T:0.40
Consensus pattern (32 bp):
ATCATTGTTCATGTATCGATACATCACTGTTC
Found at i:82582 original size:56 final size:55
Alignment explanation
Indices: 82491--82602 Score: 197
Period size: 56 Copynumber: 2.0 Consensus size: 55
82481 GGGAGGCCTT
* *
82491 ATTGATGTTGGTCTAGAACCAAATGCTATAGATAACCAATTACCCAATCATACTAA
1 ATTGATGTTGGTCTAGAACCAAATGCTACAAATAACCAATTACCCAAT-ATACTAA
82547 ATTGATGTTGGTCTAGAACCAAATGCTACAAATAACCAATTACCCAATATACTAA
1 ATTGATGTTGGTCTAGAACCAAATGCTACAAATAACCAATTACCCAATATACTAA
82602 A
1 A
82603 CCTAAAGTGA
Statistics
Matches: 54, Mismatches: 2, Indels: 1
0.95 0.04 0.02
Matches are distributed among these distances:
55 8 0.15
56 46 0.85
ACGTcount: A:0.41, C:0.20, G:0.12, T:0.28
Consensus pattern (55 bp):
ATTGATGTTGGTCTAGAACCAAATGCTACAAATAACCAATTACCCAATATACTAA
Found at i:83443 original size:39 final size:38
Alignment explanation
Indices: 83400--83474 Score: 132
Period size: 39 Copynumber: 1.9 Consensus size: 38
83390 TTGTATGAGA
*
83400 AAATCAAGTATATCTTTTGAAAATCAAGTATATCTTTTG
1 AAATCAAGTATATCTTTTGAAAATCAAAT-TATCTTTTG
83439 AAATCAAGTATATCTTTTGAAAATCAAATTATCTTT
1 AAATCAAGTATATCTTTTGAAAATCAAATTATCTTT
83475 CATACCCCAC
Statistics
Matches: 35, Mismatches: 1, Indels: 1
0.95 0.03 0.03
Matches are distributed among these distances:
38 7 0.20
39 28 0.80
ACGTcount: A:0.40, C:0.11, G:0.08, T:0.41
Consensus pattern (38 bp):
AAATCAAGTATATCTTTTGAAAATCAAATTATCTTTTG
Found at i:83444 original size:19 final size:20
Alignment explanation
Indices: 83398--83474 Score: 131
Period size: 20 Copynumber: 4.0 Consensus size: 20
83388 TTTTGTATGA
83398 GAAAATCAAGTATATCTTTT
1 GAAAATCAAGTATATCTTTT
83418 GAAAATCAAGTATATCTTTT
1 GAAAATCAAGTATATCTTTT
83438 G-AAATCAAGTATATCTTTT
1 GAAAATCAAGTATATCTTTT
*
83457 GAAAATCAAAT-TATCTTT
1 GAAAATCAAGTATATCTTT
83475 CATACCCCAC
Statistics
Matches: 55, Mismatches: 1, Indels: 3
0.93 0.02 0.05
Matches are distributed among these distances:
19 26 0.47
20 29 0.53
ACGTcount: A:0.40, C:0.10, G:0.09, T:0.40
Consensus pattern (20 bp):
GAAAATCAAGTATATCTTTT
Found at i:85634 original size:33 final size:33
Alignment explanation
Indices: 85592--85656 Score: 89
Period size: 33 Copynumber: 2.0 Consensus size: 33
85582 TTTAGGACAA
85592 TGTATCGATACAAT-T-CTTCATGTATCGATACAT
1 TGTATCGATACAATGTAC--CATGTATCGATACAT
*
85625 TGTATCGATATAATGTACCATGTATCGATACA
1 TGTATCGATACAATGTACCATGTATCGATACA
85657 AATATTGGTA
Statistics
Matches: 29, Mismatches: 1, Indels: 4
0.85 0.03 0.12
Matches are distributed among these distances:
33 27 0.93
34 1 0.03
35 1 0.03
ACGTcount: A:0.32, C:0.17, G:0.14, T:0.37
Consensus pattern (33 bp):
TGTATCGATACAATGTACCATGTATCGATACAT
Found at i:86770 original size:33 final size:33
Alignment explanation
Indices: 86701--86771 Score: 99
Period size: 33 Copynumber: 2.2 Consensus size: 33
86691 TCAGTTAAGA
* *
86701 GAACTAAAGTTCTCATCCATGCACTGCGAAAAT
1 GAACTAAAGTGCTCATCCATGCACTGCAAAAAT
*
86734 GAACTAAAGTGCTCATCCATGCATTG-AAAAAGT
1 GAACTAAAGTGCTCATCCATGCACTGCAAAAA-T
86767 GAACT
1 GAACT
86772 GATCAACTCT
Statistics
Matches: 34, Mismatches: 3, Indels: 2
0.87 0.08 0.05
Matches are distributed among these distances:
32 4 0.12
33 30 0.88
ACGTcount: A:0.38, C:0.21, G:0.17, T:0.24
Consensus pattern (33 bp):
GAACTAAAGTGCTCATCCATGCACTGCAAAAAT
Found at i:88237 original size:13 final size:13
Alignment explanation
Indices: 88219--88243 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
88209 GTAACTCACA
88219 TATCGATACATTG
1 TATCGATACATTG
88232 TATCGATACATT
1 TATCGATACATT
88244 TGGGTTTTTC
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.16, G:0.12, T:0.40
Consensus pattern (13 bp):
TATCGATACATTG
Found at i:94315 original size:13 final size:13
Alignment explanation
Indices: 94297--94321 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
94287 CAATTCTTAA
94297 TGTATCAATACAT
1 TGTATCAATACAT
94310 TGTATCAATACA
1 TGTATCAATACA
94322 ATGTGCCATG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.40, C:0.16, G:0.08, T:0.36
Consensus pattern (13 bp):
TGTATCAATACAT
Found at i:94415 original size:19 final size:20
Alignment explanation
Indices: 94372--94466 Score: 72
Period size: 20 Copynumber: 4.8 Consensus size: 20
94362 TACCAATTTT
* **
94372 ATGTATCGATACATTTATTC
1 ATGTATCGATACATATAAAC
94392 ATGTATCGATACA-ATAAAC
1 ATGTATCGATACATATAAAC
*
94411 ATGTATTGATACAT-TAGCATA-
1 ATGTATCGATACATATA--A-AC
*
94432 ATGTATCGATACATCTGAAA-
1 ATGTATCGATACATAT-AAAC
*
94452 GTGTATCGATACATA
1 ATGTATCGATACATA
94467 CAAGGGTTTT
Statistics
Matches: 62, Mismatches: 7, Indels: 12
0.77 0.09 0.15
Matches are distributed among these distances:
19 17 0.27
20 27 0.44
21 15 0.24
22 2 0.03
23 1 0.02
ACGTcount: A:0.38, C:0.14, G:0.14, T:0.35
Consensus pattern (20 bp):
ATGTATCGATACATATAAAC
Found at i:94600 original size:21 final size:22
Alignment explanation
Indices: 94549--94602 Score: 56
Period size: 21 Copynumber: 2.5 Consensus size: 22
94539 AAGTATTTTT
*
94549 ACTTAAAAACATTCGATTTAAA
1 ACTTAAAAACATTCGATTCAAA
** * *
94571 ACTCGAAAACATTTG-TTCATA
1 ACTTAAAAACATTCGATTCAAA
94592 ACTTAAAAACA
1 ACTTAAAAACA
94603 CTTATTGAAA
Statistics
Matches: 25, Mismatches: 7, Indels: 1
0.76 0.21 0.03
Matches are distributed among these distances:
21 13 0.52
22 12 0.48
ACGTcount: A:0.48, C:0.17, G:0.06, T:0.30
Consensus pattern (22 bp):
ACTTAAAAACATTCGATTCAAA
Found at i:95173 original size:13 final size:13
Alignment explanation
Indices: 95155--95179 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
95145 ATTTTGCTTA
95155 GTATCAATACATT
1 GTATCAATACATT
95168 GTATCAATACAT
1 GTATCAATACAT
95180 CATGTATTGT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.40, C:0.16, G:0.08, T:0.36
Consensus pattern (13 bp):
GTATCAATACATT
Found at i:95298 original size:20 final size:20
Alignment explanation
Indices: 95273--95311 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
95263 TCGATACATC
*
95273 ACTGTTGAACATTGTTCATA
1 ACTGTTGAACACTGTTCATA
*
95293 ACTGTTGATCACTGTTCAT
1 ACTGTTGAACACTGTTCAT
95312 GTATCGATAC
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.26, C:0.18, G:0.15, T:0.41
Consensus pattern (20 bp):
ACTGTTGAACACTGTTCATA
Found at i:95825 original size:30 final size:31
Alignment explanation
Indices: 95768--95827 Score: 88
Period size: 32 Copynumber: 2.0 Consensus size: 31
95758 GATAGGGAGA
95768 GAGGTTCCATCTTAGCCTGTGAAAAGATAGG
1 GAGGTTCCATCTTAGCCTGTGAAAAGATAGG
*
95799 GAGGTTTCTATCTTAGCCT-T-AAAAGATAG
1 GAGG-TTCCATCTTAGCCTGTGAAAAGATAG
95828 AGTTGTAAGG
Statistics
Matches: 27, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
30 9 0.33
31 5 0.19
32 13 0.48
ACGTcount: A:0.30, C:0.15, G:0.25, T:0.30
Consensus pattern (31 bp):
GAGGTTCCATCTTAGCCTGTGAAAAGATAGG
Found at i:97425 original size:21 final size:22
Alignment explanation
Indices: 97400--97451 Score: 70
Period size: 21 Copynumber: 2.4 Consensus size: 22
97390 GAACTAGAGG
*
97400 AGAAAATAAATGAGTTGGAA-A
1 AGAAAATAAATGAGTTGCAAGA
* *
97421 GGAAAAGAAATGAGTTGCAAGA
1 AGAAAATAAATGAGTTGCAAGA
97443 AGAAAATAA
1 AGAAAATAA
97452 TGAATTAAAT
Statistics
Matches: 25, Mismatches: 5, Indels: 1
0.81 0.16 0.03
Matches are distributed among these distances:
21 17 0.68
22 8 0.32
ACGTcount: A:0.58, C:0.02, G:0.25, T:0.15
Consensus pattern (22 bp):
AGAAAATAAATGAGTTGCAAGA
Found at i:99780 original size:16 final size:16
Alignment explanation
Indices: 99759--99791 Score: 57
Period size: 16 Copynumber: 2.1 Consensus size: 16
99749 AAGATTGTTG
*
99759 TTCATAAATTTGGTTT
1 TTCATAAATTTAGTTT
99775 TTCATAAATTTAGTTT
1 TTCATAAATTTAGTTT
99791 T
1 T
99792 ATCAACTTAG
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.27, C:0.06, G:0.09, T:0.58
Consensus pattern (16 bp):
TTCATAAATTTAGTTT
Found at i:99903 original size:21 final size:21
Alignment explanation
Indices: 99877--99919 Score: 61
Period size: 21 Copynumber: 2.0 Consensus size: 21
99867 GAGTTTGCAT
99877 AAAATTCGTATTAAAGGG-GAG
1 AAAATTCGTATT-AAGGGTGAG
*
99898 AAAATTTGTATTAAGGGTGAG
1 AAAATTCGTATTAAGGGTGAG
99919 A
1 A
99920 GCTTGCATAA
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
20 5 0.25
21 15 0.75
ACGTcount: A:0.42, C:0.02, G:0.28, T:0.28
Consensus pattern (21 bp):
AAAATTCGTATTAAGGGTGAG
Found at i:100830 original size:20 final size:19
Alignment explanation
Indices: 100777--100832 Score: 53
Period size: 19 Copynumber: 2.9 Consensus size: 19
100767 TAGTATCATA
*
100777 CATTGTATCGATACATGTT
1 CATTGTATCGATACATATT
*
100796 CATTATATC-AGTACATCATGT
1 CATTGTATCGA-TACAT-AT-T
100817 -ATTGTATCGATACATA
1 CATTGTATCGATACATA
100833 AAACTGGCAG
Statistics
Matches: 30, Mismatches: 3, Indels: 8
0.73 0.07 0.20
Matches are distributed among these distances:
18 1 0.03
19 14 0.47
20 13 0.43
21 2 0.07
ACGTcount: A:0.32, C:0.16, G:0.12, T:0.39
Consensus pattern (19 bp):
CATTGTATCGATACATATT
Found at i:101447 original size:32 final size:36
Alignment explanation
Indices: 101364--101450 Score: 112
Period size: 36 Copynumber: 2.5 Consensus size: 36
101354 CTAAGTGATT
*
101364 GAGAGGTTCTATCTTAG-CCTTAGAAAAAGATAGGGA
1 GAGAGGTTCTATCTTAGCCCGTA-AAAAAGATAGGGA
101400 GAGAGGTTCTATCTTAGCCCGT-AAAAAGATA-GG-
1 GAGAGGTTCTATCTTAGCCCGTAAAAAAGATAGGGA
*
101433 GA-AGTTTCTATCTTAGCC
1 GAGAGGTTCTATCTTAGCC
101451 TTGAAAAATA
Statistics
Matches: 48, Mismatches: 2, Indels: 6
0.86 0.04 0.11
Matches are distributed among these distances:
32 15 0.31
33 2 0.04
34 2 0.04
35 9 0.19
36 17 0.35
37 3 0.06
ACGTcount: A:0.32, C:0.15, G:0.25, T:0.28
Consensus pattern (36 bp):
GAGAGGTTCTATCTTAGCCCGTAAAAAAGATAGGGA
Found at i:101458 original size:32 final size:35
Alignment explanation
Indices: 101364--101458 Score: 126
Period size: 32 Copynumber: 2.8 Consensus size: 35
101354 CTAAGTGATT
101364 GAGAGGTTCTATCTTAGCCTTAGAAAAAGATAGGGA
1 GAGAGGTTCTATCTTAGCCTT-GAAAAAGATAGGGA
*
101400 GAGAGGTTCTATCTTAGCC-CGTAAAAAGATA-GG-
1 GAGAGGTTCTATCTTAGCCTTG-AAAAAGATAGGGA
*
101433 GA-AGTTTCTATCTTAGCCTTGAAAAA
1 GAGAGGTTCTATCTTAGCCTTGAAAAA
101459 TAGTGTTGTA
Statistics
Matches: 54, Mismatches: 3, Indels: 8
0.83 0.05 0.12
Matches are distributed among these distances:
32 20 0.37
33 3 0.06
34 3 0.06
35 9 0.17
36 19 0.35
ACGTcount: A:0.35, C:0.14, G:0.24, T:0.27
Consensus pattern (35 bp):
GAGAGGTTCTATCTTAGCCTTGAAAAAGATAGGGA
Found at i:105233 original size:33 final size:33
Alignment explanation
Indices: 105196--105262 Score: 98
Period size: 33 Copynumber: 2.0 Consensus size: 33
105186 TTCAACGATT
105196 TGTATCGATACATAAAATGTTGTATCGATACAA
1 TGTATCGATACATAAAATGTTGTATCGATACAA
*** *
105229 TGTATCGATACATATTTTTTTGTATCGATACAA
1 TGTATCGATACATAAAATGTTGTATCGATACAA
105262 T
1 T
105263 TTAAGCTACT
Statistics
Matches: 30, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
33 30 1.00
ACGTcount: A:0.34, C:0.12, G:0.13, T:0.40
Consensus pattern (33 bp):
TGTATCGATACATAAAATGTTGTATCGATACAA
Found at i:105234 original size:13 final size:13
Alignment explanation
Indices: 105216--105240 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
105206 CATAAAATGT
105216 TGTATCGATACAA
1 TGTATCGATACAA
105229 TGTATCGATACA
1 TGTATCGATACA
105241 TATTTTTTTG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.36, C:0.16, G:0.16, T:0.32
Consensus pattern (13 bp):
TGTATCGATACAA
Found at i:105321 original size:13 final size:13
Alignment explanation
Indices: 105303--105327 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
105293 ATTACTTAAA
105303 TGTATCGATACAT
1 TGTATCGATACAT
105316 TGTATCGATACA
1 TGTATCGATACA
105328 CTGATCTTTG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.36
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:105392 original size:52 final size:52
Alignment explanation
Indices: 105336--105464 Score: 240
Period size: 52 Copynumber: 2.5 Consensus size: 52
105326 CACTGATCTT
*
105336 TGTATCGATACATGCAGGCAAATTTGCCCAGATGTATCGATACATTATAAAA
1 TGTATCGATACATGCAGGCAAATTTGCCCAGATGTATCGATACACTATAAAA
*
105388 TGTATCGATACATGCAGGCAAATTTGCCCAGATGTATCGATACACTATTAAA
1 TGTATCGATACATGCAGGCAAATTTGCCCAGATGTATCGATACACTATAAAA
105440 TGTATCGATACATGCAGGCAAATTT
1 TGTATCGATACATGCAGGCAAATTT
105465 TCATATTTTG
Statistics
Matches: 75, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
52 75 1.00
ACGTcount: A:0.35, C:0.18, G:0.18, T:0.29
Consensus pattern (52 bp):
TGTATCGATACATGCAGGCAAATTTGCCCAGATGTATCGATACACTATAAAA
Found at i:108644 original size:13 final size:13
Alignment explanation
Indices: 108626--108650 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
108616 CAAAAAAATA
108626 TGTATCGATACAT
1 TGTATCGATACAT
108639 TGTATCGATACA
1 TGTATCGATACA
108651 ACACTTTATG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.36
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:109756 original size:48 final size:48
Alignment explanation
Indices: 109546--109871 Score: 383
Period size: 48 Copynumber: 6.8 Consensus size: 48
109536 AAAATAATGT
* * * *
109546 CAATGTGCTGATTCAAGGCCAGCTACATTGAATTTAAAGATGGAAGAGGTGC
1 CAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGAT---A-AGGTGC
*
109598 CAATATGCTGATTCAAAGCCAGCTATATTGGACTT----A-AAGGTGC
1 CAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGATAAGGTGC
* * *
109641 CAATGTGCTGATTCAAGGTCAGCTACATTGGACTTAAAGATAAAGGTGC
1 CAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGAT-AAGGTGC
* * * * *
109690 CAATATGCTGATTTAAGGCCAGCGATATTGGACTTAAAGGTGAGGTAC
1 CAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGATAAGGTGC
* *
109738 CAATGTGCTGATTCAAGGCCAGCTATATTGGACTTAAAGACAAGGTGC
1 CAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGATAAGGTGC
* * * *
109786 CAATATGCTGATTCAAGGCCAACTATATTGGGCTTAAAGACAAGGTAC
1 CAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGATAAGGTGC
* *
109834 CAATATGCTGATTCAAGGCCAACTATATTGGGCTTAAA
1 CAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAA
109872 AGGAGACGCC
Statistics
Matches: 240, Mismatches: 28, Indels: 16
0.85 0.10 0.06
Matches are distributed among these distances:
43 37 0.15
44 1 0.00
47 1 0.00
48 129 0.54
49 42 0.17
52 30 0.12
ACGTcount: A:0.33, C:0.17, G:0.24, T:0.26
Consensus pattern (48 bp):
CAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGATAAGGTGC
Found at i:109948 original size:28 final size:28
Alignment explanation
Indices: 109891--110042 Score: 173
Period size: 28 Copynumber: 5.3 Consensus size: 28
109881 CACCAACTTG
*
109891 TGTGGGCTTTTGAAAGGTTTG-CA-TCAACT
1 TGTGGGCTTTT-AAAGG-TTGCCACT-GACT
* * *
109920 TGTGTGTTTTTGAAGGTTGCCACTGACT
1 TGTGGGCTTTTAAAGGTTGCCACTGACT
*
109948 TGTGGGCTTTTAAAGATTGCCACTGACT
1 TGTGGGCTTTTAAAGGTTGCCACTGACT
*
109976 TGTGGGCTTTTAAAGGTTGCCATTGACT
1 TGTGGGCTTTTAAAGGTTGCCACTGACT
* *
110004 TGTGGGCTTTTGAAAAGGATGCCACTAACT
1 TGTGGGCTTTT--AAAGGTTGCCACTGACT
110034 TGTGGGCTT
1 TGTGGGCTT
110043 AAAAGGAATA
Statistics
Matches: 106, Mismatches: 13, Indels: 7
0.84 0.10 0.06
Matches are distributed among these distances:
27 3 0.03
28 70 0.66
29 10 0.09
30 23 0.22
ACGTcount: A:0.19, C:0.15, G:0.28, T:0.38
Consensus pattern (28 bp):
TGTGGGCTTTTAAAGGTTGCCACTGACT
Found at i:110045 original size:84 final size:84
Alignment explanation
Indices: 109891--110047 Score: 201
Period size: 84 Copynumber: 1.8 Consensus size: 84
109881 CACCAACTTG
* * * *
109891 TGTGGGCTTTTGAAAGGTTTGCATCAACTTGTGTGTTTTTGAAGGTTGCCACTGACTTGTGGGCT
1 TGTGGGCTTTTGAAAGGTTTGCATCAACTTGTGGGCTTTTGAAGGATGCCACTAACTTGTGGGC-
109956 TTTAAAGATTGCCACTGACT
65 TTTAAAGATTGCCACTGACT
**
109976 TGTGGGCTTTT-AAAGG-TTGCCATTGACTTGTGGGCTTTTGAAAAGGATGCCACTAACTTGTGG
1 TGTGGGCTTTTGAAAGGTTTG-CATCAACTTGTGGGCTTTTG--AAGGATGCCACTAACTTGTGG
*
110039 GCTTAAAAG
63 GCTTTAAAG
110048 GAATAAGAGT
Statistics
Matches: 62, Mismatches: 7, Indels: 6
0.83 0.09 0.08
Matches are distributed among these distances:
83 3 0.05
84 21 0.34
85 17 0.27
86 21 0.34
ACGTcount: A:0.21, C:0.15, G:0.28, T:0.36
Consensus pattern (84 bp):
TGTGGGCTTTTGAAAGGTTTGCATCAACTTGTGGGCTTTTGAAGGATGCCACTAACTTGTGGGCT
TTAAAGATTGCCACTGACT
Found at i:110077 original size:34 final size:35
Alignment explanation
Indices: 110033--110106 Score: 96
Period size: 35 Copynumber: 2.1 Consensus size: 35
110023 TGCCACTAAC
* * * *
110033 TTGTGGGCTTA-AAAGGAATAAGAGTGCTACGGAG
1 TTGTGAGCTTACAAAAGAAAAAGAGTGCCACGGAG
*
110067 TTGTGAGCTTACAAAAGAAAAAGAGTGCCATGGAG
1 TTGTGAGCTTACAAAAGAAAAAGAGTGCCACGGAG
110102 TTGTG
1 TTGTG
110107 GACTTTGGAA
Statistics
Matches: 34, Mismatches: 5, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
34 10 0.29
35 24 0.71
ACGTcount: A:0.34, C:0.09, G:0.32, T:0.24
Consensus pattern (35 bp):
TTGTGAGCTTACAAAAGAAAAAGAGTGCCACGGAG
Found at i:110134 original size:29 final size:29
Alignment explanation
Indices: 110085--110256 Score: 156
Period size: 29 Copynumber: 5.9 Consensus size: 29
110075 TTACAAAAGA
*
110085 AAAAGAGTGCCA-TGGAGTTGTGGACTTTGG
1 AAAAGA-TGCCACT-GACTTGTGGACTTTGG
* *
110115 AAAAGATGCCACCGACTTGTGTG-CTTCGG
1 AAAAGATGCCACTGACTTGTG-GACTTTGG
* * *
110144 AAAAGGGTGCCACTGATTTGTGGGCTTT-G
1 AAAA-GATGCCACTGACTTGTGGACTTTGG
* * * *
110173 -AAGGTTGCCACTAACTTGTGGACTTTGA
1 AAAAGATGCCACTGACTTGTGGACTTTGG
*
110201 AAAAGATGCCACTGACTTGTGGGCTTT-G
1 AAAAGATGCCACTGACTTGTGGACTTTGG
*
110229 AGAAAGATGCCACTAACTTGTGGACTTT
1 A-AAAGATGCCACTGACTTGTGGACTTT
110257 TGAAGGGTAA
Statistics
Matches: 115, Mismatches: 20, Indels: 15
0.77 0.13 0.10
Matches are distributed among these distances:
27 19 0.17
28 3 0.03
29 69 0.60
30 24 0.21
ACGTcount: A:0.26, C:0.17, G:0.29, T:0.28
Consensus pattern (29 bp):
AAAAGATGCCACTGACTTGTGGACTTTGG
Found at i:110259 original size:86 final size:86
Alignment explanation
Indices: 110102--110262 Score: 218
Period size: 86 Copynumber: 1.9 Consensus size: 86
110092 TGCCATGGAG
* * * * *
110102 TTGTGGACTTTGGAAAAGATGCCACCGACTTGTGTGCTTCGGAAAAGGGTGCCACTGATTTGTGG
1 TTGTGGACTTTGAAAAAGATGCCACCGACTTGTGGGCTTCGGAAAAGGATGCCACTAACTTGTGG
*
110167 GCTTTGAAGGTTGCCACTAAC
66 ACTTTGAAGGTTGCCACTAAC
* *
110188 TTGTGGACTTTGAAAAAGATGCCACTGACTTGTGGGCTT-TGAGAAA-GATGCCACTAACTTGTG
1 TTGTGGACTTTGAAAAAGATGCCACCGACTTGTGGGCTTCGGA-AAAGGATGCCACTAACTTGTG
110251 GACTTTTGAAGG
65 GAC-TTTGAAGG
110263 GTAAGGAGTG
Statistics
Matches: 65, Mismatches: 8, Indels: 4
0.84 0.10 0.05
Matches are distributed among these distances:
85 18 0.28
86 47 0.72
ACGTcount: A:0.24, C:0.17, G:0.29, T:0.30
Consensus pattern (86 bp):
TTGTGGACTTTGAAAAAGATGCCACCGACTTGTGGGCTTCGGAAAAGGATGCCACTAACTTGTGG
ACTTTGAAGGTTGCCACTAAC
Found at i:111714 original size:1 final size:1
Alignment explanation
Indices: 111710--111771 Score: 61
Period size: 1 Copynumber: 62.0 Consensus size: 1
111700 GTTGTTGTTG
** * * * * *
111710 TTTTTTTTTTTTGCTTTTTTGTTTTGTTTTTTTTTTTTTGTTTTTGTTTTGTTTTTTTTTTT
1 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
111772 GTGGGGGACG
Statistics
Matches: 48, Mismatches: 13, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
1 48 1.00
ACGTcount: A:0.00, C:0.02, G:0.10, T:0.89
Consensus pattern (1 bp):
T
Found at i:111722 original size:25 final size:24
Alignment explanation
Indices: 111691--111771 Score: 117
Period size: 27 Copynumber: 3.2 Consensus size: 24
111681 CATCCGGACC
*
111691 TTTTTTGTTGTTGTTGTTGTTTTTT
1 TTTTTTGTTTTTGTT-TTGTTTTTT
111716 TTTTTTGCTTTTTTGTTTTGTTTTTTT
1 TTTTTTG--TTTTTGTTTTG-TTTTTT
111743 TTTTTTGTTTTTGTTTTGTTTTTT
1 TTTTTTGTTTTTGTTTTGTTTTTT
111767 TTTTT
1 TTTTT
111772 GTGGGGGACG
Statistics
Matches: 52, Mismatches: 1, Indels: 7
0.87 0.02 0.12
Matches are distributed among these distances:
24 11 0.21
25 18 0.35
26 3 0.06
27 20 0.38
ACGTcount: A:0.00, C:0.01, G:0.14, T:0.85
Consensus pattern (24 bp):
TTTTTTGTTTTTGTTTTGTTTTTT
Found at i:111727 original size:8 final size:7
Alignment explanation
Indices: 111693--111771 Score: 64
Period size: 6 Copynumber: 11.7 Consensus size: 7
111683 TCCGGACCTT
111693 TTTTGTTG
1 TTTT-TTG
111701 TTGTTGTTG
1 TT-TT-TTG
111710 TTTTTT-
1 TTTTTTG
111716 TTTTTTG
1 TTTTTTG
111723 CTTTTTTG
1 -TTTTTTG
111731 --TTTTG
1 TTTTTTG
*
111736 TTTTTTT
1 TTTTTTG
111743 TTTTTTG
1 TTTTTTG
111750 -TTTTTG
1 TTTTTTG
111756 --TTTTG
1 TTTTTTG
111761 TTTTTT-
1 TTTTTTG
111767 TTTTT
1 TTTTT
111772 GTGGGGGACG
Statistics
Matches: 62, Mismatches: 2, Indels: 16
0.77 0.03 0.20
Matches are distributed among these distances:
5 10 0.16
6 17 0.27
7 16 0.26
8 11 0.18
9 8 0.13
ACGTcount: A:0.00, C:0.01, G:0.14, T:0.85
Consensus pattern (7 bp):
TTTTTTG
Found at i:111727 original size:33 final size:33
Alignment explanation
Indices: 111690--111759 Score: 99
Period size: 32 Copynumber: 2.2 Consensus size: 33
111680 TCATCCGGAC
111690 CTTTTTTGTTGTTGTTGTTGTTTTTTT-TTTTTG
1 CTTTTTTGTT-TTGTTGTTGTTTTTTTGTTTTTG
* *
111723 CTTTTTTGTTTTGTTTTTTTTTTTTTGTTTTTG
1 CTTTTTTGTTTTGTTGTTGTTTTTTTGTTTTTG
111756 -TTTT
1 CTTTT
111760 GTTTTTTTTT
Statistics
Matches: 34, Mismatches: 2, Indels: 3
0.87 0.05 0.08
Matches are distributed among these distances:
32 18 0.53
33 16 0.47
ACGTcount: A:0.00, C:0.03, G:0.14, T:0.83
Consensus pattern (33 bp):
CTTTTTTGTTTTGTTGTTGTTTTTTTGTTTTTG
Found at i:111736 original size:26 final size:25
Alignment explanation
Indices: 111691--111771 Score: 119
Period size: 25 Copynumber: 3.2 Consensus size: 25
111681 CATCCGGACC
*
111691 TTTTTTGTTGTTGTTGTTG-TTTTTT
1 TTTTTTGTTTTTGTT-TTGTTTTTTT
111716 TTTTTTGCTTTTTTGTTTTGTTTTTTT
1 TTTTTTG--TTTTTGTTTTGTTTTTTT
111743 TTTTTTGTTTTTGTTTTGTTTTTTT
1 TTTTTTGTTTTTGTTTTGTTTTTTT
111768 TTTT
1 TTTT
111772 GTGGGGGACG
Statistics
Matches: 52, Mismatches: 1, Indels: 6
0.88 0.02 0.10
Matches are distributed among these distances:
25 29 0.56
26 3 0.06
27 20 0.38
ACGTcount: A:0.00, C:0.01, G:0.14, T:0.85
Consensus pattern (25 bp):
TTTTTTGTTTTTGTTTTGTTTTTTT
Found at i:121344 original size:13 final size:13
Alignment explanation
Indices: 121326--121351 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
121316 TACACCAAGT
121326 ATGTATCGATACA
1 ATGTATCGATACA
121339 ATGTATCGATACA
1 ATGTATCGATACA
121352 CCAAAAAATG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.38, C:0.15, G:0.15, T:0.31
Consensus pattern (13 bp):
ATGTATCGATACA
Found at i:123604 original size:21 final size:21
Alignment explanation
Indices: 123571--123620 Score: 57
Period size: 21 Copynumber: 2.3 Consensus size: 21
123561 TTGCAAGTTG
*
123571 AAATAAAGAAGTTGGCTAATGA
1 AAATAAAGAAGTTAGCTAA-GA
*
123593 AAATAATG-AGTTAGCTAAGAA
1 AAATAAAGAAGTTAGCTAAG-A
123614 AAATAAA
1 AAATAAA
123621 AACTTGCATA
Statistics
Matches: 24, Mismatches: 3, Indels: 3
0.80 0.10 0.10
Matches are distributed among these distances:
20 1 0.04
21 16 0.67
22 7 0.29
ACGTcount: A:0.56, C:0.04, G:0.18, T:0.22
Consensus pattern (21 bp):
AAATAAAGAAGTTAGCTAAGA
Found at i:125435 original size:15 final size:15
Alignment explanation
Indices: 125415--125445 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
125405 TAAAAATGTC
*
125415 CAAAATGAGGAAGCT
1 CAAAATGAAGAAGCT
125430 CAAAATGAAGAAGCT
1 CAAAATGAAGAAGCT
125445 C
1 C
125446 CAAACGAAAT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.48, C:0.16, G:0.23, T:0.13
Consensus pattern (15 bp):
CAAAATGAAGAAGCT
Found at i:127675 original size:20 final size:20
Alignment explanation
Indices: 127632--127677 Score: 58
Period size: 21 Copynumber: 2.2 Consensus size: 20
127622 AAATCTTTTG
127632 CAAAATACTTGTTTTTCACTT
1 CAAAATACTTGTTTTTCAC-T
*
127653 CAAATTACTTCGTTTTTCA-T
1 CAAAATACTT-GTTTTTCACT
127673 CAAAA
1 CAAAA
127678 CCAGCATCAA
Statistics
Matches: 22, Mismatches: 2, Indels: 3
0.81 0.07 0.11
Matches are distributed among these distances:
20 5 0.23
21 9 0.41
22 8 0.36
ACGTcount: A:0.33, C:0.20, G:0.04, T:0.43
Consensus pattern (20 bp):
CAAAATACTTGTTTTTCACT
Found at i:130059 original size:13 final size:13
Alignment explanation
Indices: 130041--130066 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
130031 TACACCAAGT
130041 ATGTATCGATACA
1 ATGTATCGATACA
130054 ATGTATCGATACA
1 ATGTATCGATACA
130067 CCAAAAATTG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.38, C:0.15, G:0.15, T:0.31
Consensus pattern (13 bp):
ATGTATCGATACA
Found at i:130064 original size:32 final size:33
Alignment explanation
Indices: 130023--130086 Score: 103
Period size: 32 Copynumber: 2.0 Consensus size: 33
130013 TAGCCAAACT
**
130023 TGTATCGATACACCAAGTA-TGTATCGATACAA
1 TGTATCGATACACCAAAAATTGTATCGATACAA
130055 TGTATCGATACACCAAAAATTGTATCGATACA
1 TGTATCGATACACCAAAAATTGTATCGATACA
130087 TTGGCTTGTA
Statistics
Matches: 29, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
32 17 0.59
33 12 0.41
ACGTcount: A:0.39, C:0.19, G:0.14, T:0.28
Consensus pattern (33 bp):
TGTATCGATACACCAAAAATTGTATCGATACAA
Found at i:135437 original size:13 final size:13
Alignment explanation
Indices: 135419--135443 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
135409 CAAAAAAATA
135419 TGTATCGATACAT
1 TGTATCGATACAT
135432 TGTATCGATACA
1 TGTATCGATACA
135444 ACACTTTATG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.36
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:135439 original size:33 final size:33
Alignment explanation
Indices: 135397--135463 Score: 98
Period size: 33 Copynumber: 2.0 Consensus size: 33
135387 AGTAGCTTAA
135397 ATTGTATCGATACAAAAAAATATGTATCGATAC
1 ATTGTATCGATACAAAAAAATATGTATCGATAC
* ***
135430 ATTGTATCGATACAACACTTTATGTATCGATAC
1 ATTGTATCGATACAAAAAAATATGTATCGATAC
135463 A
1 A
135464 AATCGTTGAA
Statistics
Matches: 30, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
33 30 1.00
ACGTcount: A:0.40, C:0.15, G:0.12, T:0.33
Consensus pattern (33 bp):
ATTGTATCGATACAAAAAAATATGTATCGATAC
Found at i:138809 original size:20 final size:22
Alignment explanation
Indices: 138779--138822 Score: 74
Period size: 20 Copynumber: 2.1 Consensus size: 22
138769 TGATTTCCCG
138779 TGTGAATGTATCGATACA-ATT
1 TGTGAATGTATCGATACATATT
138800 TGTG-ATGTATCGATACATATT
1 TGTGAATGTATCGATACATATT
138821 TG
1 TG
138823 AAAATGTAGC
Statistics
Matches: 22, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
20 13 0.59
21 9 0.41
ACGTcount: A:0.30, C:0.09, G:0.20, T:0.41
Consensus pattern (22 bp):
TGTGAATGTATCGATACATATT
Found at i:138894 original size:13 final size:13
Alignment explanation
Indices: 138876--138901 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
138866 CAATTTTTGG
138876 TGTATCGATACAT
1 TGTATCGATACAT
138889 TGTATCGATACAT
1 TGTATCGATACAT
138902 ACTTTGTATA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.15, G:0.15, T:0.38
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:140100 original size:34 final size:34
Alignment explanation
Indices: 140061--140156 Score: 85
Period size: 30 Copynumber: 2.9 Consensus size: 34
140051 TTGATCAGGG
*
140061 CAAAACCATAATAGTCAACTAAGGGTGACTAGGA
1 CAAAACCATAATAGTCAACTAAGGATGACTAGGA
* *
140095 CAAAACC-TAA-A-TCGGA-T-AGGTTGACTAGGA
1 CAAAACCATAATAGTC-AACTAAGGATGACTAGGA
** * *
140125 TGAAACCATAATAGTCATCTAAAGATGACTAG
1 CAAAACCATAATAGTCAACTAAGGATGACTAG
140157 AGTGAAACCA
Statistics
Matches: 48, Mismatches: 8, Indels: 12
0.71 0.12 0.18
Matches are distributed among these distances:
30 17 0.35
31 6 0.12
32 3 0.06
33 6 0.12
34 16 0.33
ACGTcount: A:0.43, C:0.17, G:0.20, T:0.21
Consensus pattern (34 bp):
CAAAACCATAATAGTCAACTAAGGATGACTAGGA
Found at i:141632 original size:44 final size:41
Alignment explanation
Indices: 141565--141685 Score: 145
Period size: 44 Copynumber: 2.9 Consensus size: 41
141555 ATAGTTGCTC
141565 TTTTT-GGTTTTTATCCAATTTTTTTGGTGTTTCATATGCCCTT
1 TTTTTGGGTTTTTATCC-ATTTTTTTGGTGTTTCA-ATG-CCTT
* * *
141608 TTTTTGGGTTTTCATCACATTTTTTTGGTGTCTTGAATGCTTT
1 TTTTTGGGTTTTTATC-CATTTTTTTGGTGT-TTCAATGCCTT
* *
141651 TTTTTGAGTTTTTATCTATTTTTTTGGTGTTTCAA
1 TTTTTGGGTTTTTATCCATTTTTTTGGTGTTTCAA
141686 ACACCATTTT
Statistics
Matches: 68, Mismatches: 7, Indels: 8
0.82 0.08 0.10
Matches are distributed among these distances:
41 4 0.06
42 13 0.19
43 22 0.32
44 25 0.37
45 4 0.06
ACGTcount: A:0.12, C:0.11, G:0.16, T:0.61
Consensus pattern (41 bp):
TTTTTGGGTTTTTATCCATTTTTTTGGTGTTTCAATGCCTT
Found at i:141682 original size:21 final size:22
Alignment explanation
Indices: 141571--141682 Score: 74
Period size: 21 Copynumber: 5.2 Consensus size: 22
141561 GCTCTTTTTG
141571 GTTTTTAT-CCAATTTTTTTGGT
1 GTTTTTATGCC-ATTTTTTTGGT
* *
141593 GTTTCATATGCCCTTTTTTTGG-
1 GTTT-TTATGCCATTTTTTTGGT
*
141615 GTTTTCAT-CACATTTTTTTGGT
1 GTTTTTATGC-CATTTTTTTGGT
** * *
141637 GTCTTGAATG-C-TTTTTTTTGA
1 GT-TTTTATGCCATTTTTTTGGT
*
141658 GTTTTTAT-CTATTTTTTTGGT
1 GTTTTTATGCCATTTTTTTGGT
141679 GTTT
1 GTTT
141683 CAAACACCAT
Statistics
Matches: 68, Mismatches: 14, Indels: 17
0.69 0.14 0.17
Matches are distributed among these distances:
20 5 0.07
21 34 0.50
22 11 0.16
23 16 0.24
24 2 0.03
ACGTcount: A:0.12, C:0.11, G:0.16, T:0.62
Consensus pattern (22 bp):
GTTTTTATGCCATTTTTTTGGT
Found at i:141696 original size:42 final size:40
Alignment explanation
Indices: 141565--141703 Score: 125
Period size: 43 Copynumber: 3.3 Consensus size: 40
141555 ATAGTTGCTC
*
141565 TTTTTGGTTTTTATCCAATTTTTTTGGTGTTTCATATGCCCTT
1 TTTTTGGTTTTTAT-CAATTTTTTTGGTGTTTCA-A-ACCCTT
* * ** *
141608 TTTTTGGGTTTTCATCACATTTTTTTGGTGTCTTGAATGCTTT
1 TTTTT-GGTTTTTATCA-ATTTTTTTGGTGT-TTCAAACCCTT
* *
141651 TTTTTGAGTTTTTATCTATTTTTTTGGTGTTTCAAACACCAT
1 TTTTTG-GTTTTTATCAATTTTTTTGGTGTTTCAAAC-CCTT
*
141693 TTTTGGGTTTT
1 TTTTTGGTTTT
141704 ATTTGATTTT
Statistics
Matches: 78, Mismatches: 13, Indels: 12
0.76 0.13 0.12
Matches are distributed among these distances:
41 9 0.12
42 21 0.27
43 23 0.29
44 22 0.28
45 3 0.04
ACGTcount: A:0.13, C:0.12, G:0.16, T:0.60
Consensus pattern (40 bp):
TTTTTGGTTTTTATCAATTTTTTTGGTGTTTCAAACCCTT
Found at i:143475 original size:21 final size:22
Alignment explanation
Indices: 143449--143489 Score: 66
Period size: 21 Copynumber: 1.9 Consensus size: 22
143439 ATATGAAAAA
143449 ATAAAAAAAACAC-AATATAAT
1 ATAAAAAAAACACTAATATAAT
*
143470 ATAAAAAAAATACTAATATA
1 ATAAAAAAAACACTAATATA
143490 TCAAAATCTA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
21 12 0.67
22 6 0.33
ACGTcount: A:0.71, C:0.07, G:0.00, T:0.22
Consensus pattern (22 bp):
ATAAAAAAAACACTAATATAAT
Found at i:143553 original size:20 final size:20
Alignment explanation
Indices: 143528--143572 Score: 65
Period size: 20 Copynumber: 2.3 Consensus size: 20
143518 ATCAAAATTT
143528 ATATAAATACAATATATAAA
1 ATATAAATACAATATATAAA
* *
143548 ATATAATTATAATATATAAA
1 ATATAAATACAATATATAAA
143568 A-ATAA
1 ATATAA
143573 TATAAACATA
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
19 4 0.17
20 19 0.83
ACGTcount: A:0.64, C:0.02, G:0.00, T:0.33
Consensus pattern (20 bp):
ATATAAATACAATATATAAA
Found at i:143560 original size:6 final size:7
Alignment explanation
Indices: 143527--143576 Score: 52
Period size: 7 Copynumber: 7.6 Consensus size: 7
143517 TATCAAAATT
143527 TATATAA
1 TATATAA
*
143534 -ATACAA
1 TATATAA
143540 TATATAA
1 TATATAA
*
143547 AATATAA
1 TATATAA
143554 T-TATAA
1 TATATAA
143560 TATATAA
1 TATATAA
*
143567 -AAATAA
1 TATATAA
143573 TATA
1 TATA
143577 AACATAATAT
Statistics
Matches: 34, Mismatches: 6, Indels: 6
0.74 0.13 0.13
Matches are distributed among these distances:
6 16 0.47
7 18 0.53
ACGTcount: A:0.62, C:0.02, G:0.00, T:0.36
Consensus pattern (7 bp):
TATATAA
Found at i:143575 original size:11 final size:11
Alignment explanation
Indices: 143541--143589 Score: 50
Period size: 11 Copynumber: 4.6 Consensus size: 11
143531 TAAATACAAT
143541 ATATAAAATATA
1 ATATAAAA-ATA
*
143553 AT-T-ATAAT-
1 ATATAAAAATA
143561 ATATAAAAATA
1 ATATAAAAATA
*
143572 ATATAAACATA
1 ATATAAAAATA
143583 ATATAAA
1 ATATAAA
143590 TTATCATTTT
Statistics
Matches: 31, Mismatches: 3, Indels: 7
0.76 0.07 0.17
Matches are distributed among these distances:
8 2 0.06
9 3 0.10
10 6 0.19
11 18 0.58
12 2 0.06
ACGTcount: A:0.65, C:0.02, G:0.00, T:0.33
Consensus pattern (11 bp):
ATATAAAAATA
Found at i:144713 original size:13 final size:12
Alignment explanation
Indices: 144677--144717 Score: 50
Period size: 13 Copynumber: 3.5 Consensus size: 12
144667 TTTATATTTT
144677 ATATTTAAAAT-
1 ATATTTAAAATA
*
144688 ATA-TTAAATTA
1 ATATTTAAAATA
144699 ATATTTAATAATA
1 ATATTTAA-AATA
144712 ATATTT
1 ATATTT
144718 GATAAATAGT
Statistics
Matches: 25, Mismatches: 2, Indels: 4
0.81 0.06 0.13
Matches are distributed among these distances:
10 6 0.24
11 6 0.24
12 4 0.16
13 9 0.36
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (12 bp):
ATATTTAAAATA
Found at i:144725 original size:24 final size:22
Alignment explanation
Indices: 144677--144725 Score: 53
Period size: 24 Copynumber: 2.1 Consensus size: 22
144667 TTTATATTTT
*
144677 ATATTTAAAATATATTAAATTA
1 ATATTTAAAATATATTAAATAA
**
144699 ATATTTAATAATAATATTTGATAA
1 ATATTTAA-AAT-ATATTAAATAA
144723 ATA
1 ATA
144726 GTACATGATT
Statistics
Matches: 22, Mismatches: 3, Indels: 2
0.81 0.11 0.07
Matches are distributed among these distances:
22 8 0.36
23 3 0.14
24 11 0.50
ACGTcount: A:0.53, C:0.00, G:0.02, T:0.45
Consensus pattern (22 bp):
ATATTTAAAATATATTAAATAA
Found at i:144813 original size:12 final size:12
Alignment explanation
Indices: 144737--144774 Score: 58
Period size: 12 Copynumber: 3.2 Consensus size: 12
144727 TACATGATTA
* *
144737 TTATATATTAAA
1 TTATTTATTAAT
144749 TTATTTATTAAT
1 TTATTTATTAAT
144761 TTATTTATTAAT
1 TTATTTATTAAT
144773 TT
1 TT
144775 TAGGAATAAT
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
12 24 1.00
ACGTcount: A:0.37, C:0.00, G:0.00, T:0.63
Consensus pattern (12 bp):
TTATTTATTAAT
Found at i:145879 original size:109 final size:107
Alignment explanation
Indices: 145698--145894 Score: 247
Period size: 109 Copynumber: 1.8 Consensus size: 107
145688 TTCTTATTGG
* *
145698 ATTATTAAATTTCTTAAATACTTTGATAATATATCTTGTACTTTTGTTTACCTTTGGAATAGATA
1 ATTATTAAATTTCTTAAATACTTTCATAATACATCTTGTACTTTTGTTTACCTTTGGAATAGATA
*
145763 ATAAAAAAATTATGTAATTTTTCATTTTACTTCTTTCTTACCAT
66 AT-AAAAAATTACGT-ATTTTTCATTTTACTTCTTTCTTACCAT
* * * *
145807 ATTATTAAATTTCTTAAATGCTTTCATAATACAT-TT-TATTATATTGTTTACCTTTTGAA-AGG
1 ATTATTAAATTTCTTAAATACTTTCATAATACATCTTGTACT-T-TTGTTTACCTTTGGAATAGA
* *
145869 TGATGGAAAAATTACGTATTTTTCAT
64 TAAT-AAAAAATTACGTATTTTTCAT
145895 GTTCAATCTG
Statistics
Matches: 76, Mismatches: 10, Indels: 6
0.83 0.11 0.07
Matches are distributed among these distances:
107 12 0.16
108 18 0.24
109 46 0.61
ACGTcount: A:0.33, C:0.10, G:0.08, T:0.49
Consensus pattern (107 bp):
ATTATTAAATTTCTTAAATACTTTCATAATACATCTTGTACTTTTGTTTACCTTTGGAATAGATA
ATAAAAAATTACGTATTTTTCATTTTACTTCTTTCTTACCAT
Found at i:145909 original size:109 final size:109
Alignment explanation
Indices: 145698--145919 Score: 245
Period size: 109 Copynumber: 2.0 Consensus size: 109
145688 TTCTTATTGG
* *
145698 ATTATTAAATTTCTTAAATACTTTGATAATATATCTTGTACTTTTGTTTACCTTTGGAATAGATA
1 ATTATTAAATTTCTTAAATACTTTCATAATACATCTTGTACTTTTGTTTACCTTTGGAATAGATA
* * * *
145763 ATAAAAAAATTATGTAATTTTTCATTTTACTTCTTTCTTACCAT
66 ATAAAAAAATTACGTAATTTTTCATTTCAATTCTTTCTTACCAA
* * * *
145807 ATTATTAAATTTCTTAAATGCTTTCATAATACAT-TT-TATTATATTGTTTACCTTTTGAA-AGG
1 ATTATTAAATTTCTTAAATACTTTCATAATACATCTTGTACT-T-TTGTTTACCTTTGGAATAGA
* ** * *
145869 TGATGGAAAAATTACGT-ATTTTTCATGTTCAATCTGTTTCTTTCCAA
64 TAATAAAAAAATTACGTAATTTTTCAT-TTCAAT-TCTTTCTTACCAA
145916 ATTA
1 ATTA
145920 CATATTATTC
Statistics
Matches: 94, Mismatches: 15, Indels: 8
0.80 0.13 0.07
Matches are distributed among these distances:
107 12 0.13
108 22 0.23
109 60 0.64
ACGTcount: A:0.32, C:0.11, G:0.08, T:0.49
Consensus pattern (109 bp):
ATTATTAAATTTCTTAAATACTTTCATAATACATCTTGTACTTTTGTTTACCTTTGGAATAGATA
ATAAAAAAATTACGTAATTTTTCATTTCAATTCTTTCTTACCAA
Found at i:148353 original size:75 final size:75
Alignment explanation
Indices: 148230--148377 Score: 251
Period size: 75 Copynumber: 2.0 Consensus size: 75
148220 TGGGAAGAAC
* * *
148230 ATTGATTTAAAAAAGAAACAGTTGAAAAATAAGATAAAAGTTCTGAAATAACATTTACTTATTCT
1 ATTGATATAAAAAAGAAACAGTCGAAAAAAAAGATAAAAGTTCTGAAATAACATTTACTTATTCT
148295 AATAAGTAAA
66 AATAAGTAAA
* *
148305 ATTGATATAAAAAAGAAACAGTCGAAAAAAAAGATGAAAGTTTTGAAATAACATTTACTTATTCT
1 ATTGATATAAAAAAGAAACAGTCGAAAAAAAAGATAAAAGTTCTGAAATAACATTTACTTATTCT
148370 AATAAGTA
66 AATAAGTA
148378 GCTTTTTTCT
Statistics
Matches: 68, Mismatches: 5, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
75 68 1.00
ACGTcount: A:0.52, C:0.07, G:0.11, T:0.30
Consensus pattern (75 bp):
ATTGATATAAAAAAGAAACAGTCGAAAAAAAAGATAAAAGTTCTGAAATAACATTTACTTATTCT
AATAAGTAAA
Found at i:150000 original size:5 final size:5
Alignment explanation
Indices: 149990--150021 Score: 55
Period size: 5 Copynumber: 6.4 Consensus size: 5
149980 ATGACCACTT
*
149990 AATAA AATAA AATAA AATAA AATAA AGTAA AA
1 AATAA AATAA AATAA AATAA AATAA AATAA AA
150022 AATACTTGCT
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
5 25 1.00
ACGTcount: A:0.78, C:0.00, G:0.03, T:0.19
Consensus pattern (5 bp):
AATAA
Found at i:153667 original size:6 final size:6
Alignment explanation
Indices: 153622--153665 Score: 70
Period size: 6 Copynumber: 7.3 Consensus size: 6
153612 CCAATACACC
* *
153622 CAGAAG CAGAGG CAGAGG CAGAGG CAGAGG CAGAGG CAAAGG CA
1 CAGAGG CAGAGG CAGAGG CAGAGG CAGAGG CAGAGG CAGAGG CA
153666 AAAGAAAGAA
Statistics
Matches: 36, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
6 36 1.00
ACGTcount: A:0.39, C:0.18, G:0.43, T:0.00
Consensus pattern (6 bp):
CAGAGG
Found at i:154659 original size:13 final size:13
Alignment explanation
Indices: 154641--154665 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
154631 TTTTAATGTT
154641 TTTTAAAAAATAA
1 TTTTAAAAAATAA
154654 TTTTAAAAAATA
1 TTTTAAAAAATA
154666 TAATAATAAT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.60, C:0.00, G:0.00, T:0.40
Consensus pattern (13 bp):
TTTTAAAAAATAA
Found at i:158598 original size:48 final size:46
Alignment explanation
Indices: 158467--158600 Score: 133
Period size: 47 Copynumber: 2.8 Consensus size: 46
158457 AAATCATCAT
* * *
158467 TAATCAACTTGTAGCTTTTGCACAGATAAAGCTACAAACCTTCCTTA
1 TAATCAACTAGTAGCTTTTGCATAGATAAAGCTACAAA-CTTCCTCA
* * * * ** *
158514 TAATCAACTTGTAACTTTTACATGGATAAATTTACAAACTTTCTCA
1 TAATCAACTAGTAGCTTTTGCATAGATAAAGCTACAAACTTCCTCA
* *
158560 TAATCAACACTAGTGGCTTTTGCATAGAGAAAGCTACAAAC
1 TAATC-A-ACTAGTAGCTTTTGCATAGATAAAGCTACAAAC
158601 CCCACAACAA
Statistics
Matches: 69, Mismatches: 16, Indels: 3
0.78 0.18 0.03
Matches are distributed among these distances:
46 11 0.16
47 33 0.48
48 25 0.36
ACGTcount: A:0.37, C:0.20, G:0.11, T:0.32
Consensus pattern (46 bp):
TAATCAACTAGTAGCTTTTGCATAGATAAAGCTACAAACTTCCTCA
Found at i:159772 original size:154 final size:150
Alignment explanation
Indices: 159487--159996 Score: 535
Period size: 153 Copynumber: 3.3 Consensus size: 150
159477 ATTTTCTTTC
* * *
159487 AGATTTTTTCTTTTTTCAAAATATGAAGTTTTCTACTTCGTAAATTTTTTAGCAGGATTTTTATA
1 AGATTTTTTCTGTTATCAAAATATGAAGTTTTCTACTTCGTAAATTTTTTAG-AGGATTTTTCTA
* * * *
159552 TGTTTATGATTTGC-AAAATTCTTCAAATATTATTGCTTAATTGACA-TTAAATCAGTTTTGAAA
65 AGTTTATAATTT-CTAAAATTCTTCAAATATTATTGTTTAATT--CATTTAAATCATTTTTGAAA
159615 AATTTAATTTATTTTATGAGTTTT
127 AATTTAATTTATTTTATGAGTTTT
* * * *
159639 AGATTTTTTCTAGTTATAAAAATATGAAATTTTCTAC-TCTATAAATTTTTTTGATGGGATTTTT
1 AGATTTTTTCT-GTTATCAAAATATGAAGTTTTCTACTTC-GTAAATTTTTTAGA--GGATTTTT
* * * * *
159703 CTAGGTTTATAATTTTTAAAATTTTTCAAATATCATTGTTTAATTCATTTGAAATCATTTTTGAC
62 CTAAGTTTATAATTTCTAAAATTCTTCAAATATTATTGTTTAATTCATTT-AAATCATTTTTGAA
*
159768 AAATTTAATTCATTTTATGAGTTTT
126 AAATTTAATTTATTTTATGAGTTTT
* * ** * * ** *
159793 AAAATTTTTTCTGTTACCAAAATGCGGAGTTTTCTATTTCGTAAATTTCCTAGAAAGATTTTTCT
1 -AGATTTTTTCTGTTATCAAAATATGAAGTTTTCTACTTCGTAAATTTTTTAG-AGGATTTTTCT
* * *
159858 AAATTTACAATTTCTAAAATTCTTCAAATATTGTTGTTTAATTCATATTAAATCATTTTTGAAAA
64 AAGTTTATAATTTCTAAAATTCTTCAAATATTATTGTTTAATTCAT-TTAAATCATTTTTGAAAA
*
159923 ATGTAATTTATTTTATGAGTTTT
128 ATTTAATTTATTTTATGAGTTTT
* * * * *
159946 AGAGTTTTTCCTATTTTCAAGATA-CAGAGTTTTCTA-TTCTGTAAATTTTTT
1 AGA-TTTTTTCTGTTATCAAAATATGA-AGTTTTCTACTTC-GTAAATTTTTT
159997 GAAAGATTTT
Statistics
Matches: 294, Mismatches: 50, Indels: 27
0.79 0.13 0.07
Matches are distributed among these distances:
152 21 0.07
153 150 0.51
154 110 0.37
155 13 0.04
ACGTcount: A:0.31, C:0.09, G:0.10, T:0.50
Consensus pattern (150 bp):
AGATTTTTTCTGTTATCAAAATATGAAGTTTTCTACTTCGTAAATTTTTTAGAGGATTTTTCTAA
GTTTATAATTTCTAAAATTCTTCAAATATTATTGTTTAATTCATTTAAATCATTTTTGAAAAATT
TAATTTATTTTATGAGTTTT
Found at i:161349 original size:156 final size:157
Alignment explanation
Indices: 161173--161721 Score: 739
Period size: 156 Copynumber: 3.5 Consensus size: 157
161163 TCCAATGCCT
*
161173 AAAGTACCT-GCCTAAATCTTCCTTGTAACTTTTGGATGTGTTTTGTATGCTAATTTTGATTTCT
1 AAAGTACTTGGCC-AAATCTTCCTTGTAACTTTTGGATGTGTTTTGTATGCTAATTTTGATTTCT
* * *
161237 TGGATGTTTAATTTTGTGTTTTTATTATATAAGAACAAACATGCAAAATTAAAAAGTTTAAGGGT
65 TGGATGTTTAATTTTGTGTTTTTATTAGATAAGAACTAACTTGCAAAATTAAAAAGTTTAAGGGT
* *
161302 TTTATTTGAAAATCTTGTTCTAAAGCC-
130 TTTATTCGAAAATCTTGTTCTAAGGCCA
* *
161329 AAAGTACTTGGCCAAATCTTCCTTATAACTTTTGGATGTGTTTTGTATGCTAATTTTGATTTCAT
1 AAAGTACTTGGCCAAATCTTCCTTGTAACTTTTGGATGTGTTTTGTATGCTAATTTTGATTTCTT
* * * * *
161394 GGATGTTTAATTTTGTGTTTTTATTAGGTAAAAACTAACTTGTAAAATTAGAAAGTTTAGGGGTT
66 GGATGTTTAATTTTGTGTTTTTATTAGATAAGAACTAACTTGCAAAATTAAAAAGTTTAAGGGTT
161459 TTATTCGAAAATCTTGTTCTAAGGCCA
131 TTATTCGAAAATCTTGTTCTAAGGCCA
* * ** *
161486 AAACTACTTAGCTGAATCTTCCTTGTAACTTTTGGATGTGTTTTGTATGCTGATTTTGATTTCTT
1 AAAGTACTTGGCCAAATCTTCCTTGTAACTTTTGGATGTGTTTTGTATGCTAATTTTGATTTCTT
* * * * *
161551 GGATATTTAATTTTGTGTTTTTATTAGCTAAGGACTAATTTACAAAATTAAAAAGTTTAAGGG-T
66 GGATGTTTAATTTTGTGTTTTTATTAGATAAGAACTAACTTGCAAAATTAAAAAGTTTAAGGGTT
* * * *
161615 TTATTCAAAAATTTTATTCCAAGGCCA
131 TTATTCGAAAATCTTGTTCTAAGGCCA
* * * *
161642 AAAGTGA-TTGGTCGAATCTTCCTTTTAACTTTTGGATGTGTTTTGTATGCTGATTTTGACTTT-
1 AAAGT-ACTTGGCCAAATCTTCCTTGTAACTTTTGGATGTGTTTTGTATGCTAATTTTGA-TTTC
* *
161705 TTAGATGGTTAATTTTG
64 TTGGATGTTTAATTTTG
161722 CATTTTAATT
Statistics
Matches: 348, Mismatches: 41, Indels: 8
0.88 0.10 0.02
Matches are distributed among these distances:
156 229 0.66
157 119 0.34
ACGTcount: A:0.28, C:0.10, G:0.17, T:0.45
Consensus pattern (157 bp):
AAAGTACTTGGCCAAATCTTCCTTGTAACTTTTGGATGTGTTTTGTATGCTAATTTTGATTTCTT
GGATGTTTAATTTTGTGTTTTTATTAGATAAGAACTAACTTGCAAAATTAAAAAGTTTAAGGGTT
TTATTCGAAAATCTTGTTCTAAGGCCA
Found at i:162752 original size:156 final size:156
Alignment explanation
Indices: 162565--163003 Score: 510
Period size: 156 Copynumber: 2.8 Consensus size: 156
162555 TTGTCATCTT
* * * * *
162565 GATGCTTTTATGCTAAAGGTGTACATTTAGGATAGGTTCATCCTATTTATAATTATTTTAGTGTC
1 GATGCTTTTATGCCAAAGGTGTGCATTTAGGATAGGTTCATCCCATTTATGATCATTTTAGTGTC
** * * *
162630 CATTAGGGTTACTGAGATACTTTTATGTCGAAGATATACCCT-AGAGGCATTTTCGTAATTTTTC
66 CATTAGGGTTACCAAGATACTTTCATGTCGAAGATATACCCTAAG-GGCATTTTCATAATTTTCC
* *
162694 TAGAATCGAGTCCTAGGTTATCACT-AG
130 TAAAATCGAGTCATAGGTTATC-CTCAG
* *
162721 GATGCTTTTATTCCAAAGGTGTGCATTTAGGATAGGTTTATCCCATTTATGATCATTTTAGTGTC
1 GATGCTTTTATGCCAAAGGTGTGCATTTAGGATAGGTTCATCCCATTTATGATCATTTTAGTGTC
* * * *
162786 CACTAGGGTTACCAAGATACTTTCATGTCGAAGGTATACGCTAAGGGTATTTTCATAATTTTCCT
66 CATTAGGGTTACCAAGATACTTTCATGTCGAAGATATACCCTAAGGGCATTTTCATAATTTTCCT
* * *
162851 AAAATTGAGTCATAGGTTGTCCTCGG
131 AAAATCGAGTCATAGGTTATCCTCAG
** * * * *
162877 GATAATTTTATGCCAAAAGTTTGCATTTATGATAGGTTCATCCCATTTATGATCATTTCAGTGTC
1 GATGCTTTTATGCCAAAGGTGTGCATTTAGGATAGGTTCATCCCATTTATGATCATTTTAGTGTC
* * * * *
162942 CATTAGGGTTATC-AGAATACTTTCACGTTGAAGGTATA-CCTCAAGGGCAATTT-AGTAATTTT
66 CATTAGGGTTACCAAG-ATACTTTCATGTCGAAGATATACCCT-AAGGGCATTTTCA-TAATTTT
163004 GTGTTAAAAC
Statistics
Matches: 242, Mismatches: 36, Indels: 10
0.84 0.12 0.03
Matches are distributed among these distances:
155 7 0.03
156 233 0.96
157 2 0.01
ACGTcount: A:0.27, C:0.15, G:0.19, T:0.39
Consensus pattern (156 bp):
GATGCTTTTATGCCAAAGGTGTGCATTTAGGATAGGTTCATCCCATTTATGATCATTTTAGTGTC
CATTAGGGTTACCAAGATACTTTCATGTCGAAGATATACCCTAAGGGCATTTTCATAATTTTCCT
AAAATCGAGTCATAGGTTATCCTCAG
Found at i:164012 original size:24 final size:24
Alignment explanation
Indices: 163985--164053 Score: 66
Period size: 25 Copynumber: 2.8 Consensus size: 24
163975 CATATCTAGG
*
163985 CCATGTTACGATAAATACCTCTAT
1 CCATGTTACGACAAATACCTCTAT
* * *
164009 CCATATTTACGACACATACCTTTAT
1 CCAT-GTTACGACAAATACCTCTAT
* * *
164034 CCACGTTATGACATATACCT
1 CCATGTTACGACAAATACCT
164054 TGTATCTGAA
Statistics
Matches: 36, Mismatches: 8, Indels: 2
0.78 0.17 0.04
Matches are distributed among these distances:
24 17 0.47
25 19 0.53
ACGTcount: A:0.32, C:0.28, G:0.07, T:0.33
Consensus pattern (24 bp):
CCATGTTACGACAAATACCTCTAT
Found at i:165344 original size:68 final size:69
Alignment explanation
Indices: 165207--165432 Score: 364
Period size: 69 Copynumber: 3.3 Consensus size: 69
165197 CTCTTAGAAG
* *
165207 AATGAGGTTGGAGTATCCCCGACAATGATAATTTGGACAAAATAAGACTTAAATTTTGATGAGTT
1 AATGGGGTTGGAGTATCCCCGACAATGATAATTTGGACAAAATAAGATTTAAATTTTGATGAGTT
165272 TAAA
66 TAAA
*
165276 AATGGGGTTGGAGTATACCCGACAATGATAATTTGGA-AAAATAAGATTTAAATTTTGATGAGTT
1 AATGGGGTTGGAGTATCCCCGACAATGATAATTTGGACAAAATAAGATTTAAATTTTGATGAGTT
165340 TAAA
66 TAAA
** * * *
165344 AACAGGGTTGGAGTATCCCCGATAATGATAATTTGGACAAAATAAGATTTAAATTTTAATGAGTC
1 AATGGGGTTGGAGTATCCCCGACAATGATAATTTGGACAAAATAAGATTTAAATTTTGATGAGTT
165409 TAAA
66 TAAA
*
165413 AATGGGGTTGGAATATCCCC
1 AATGGGGTTGGAGTATCCCC
165433 TCGGAGGAAT
Statistics
Matches: 144, Mismatches: 12, Indels: 2
0.91 0.08 0.01
Matches are distributed among these distances:
68 63 0.44
69 81 0.56
ACGTcount: A:0.38, C:0.10, G:0.21, T:0.31
Consensus pattern (69 bp):
AATGGGGTTGGAGTATCCCCGACAATGATAATTTGGACAAAATAAGATTTAAATTTTGATGAGTT
TAAA
Found at i:165677 original size:193 final size:194
Alignment explanation
Indices: 165348--165849 Score: 697
Period size: 193 Copynumber: 2.6 Consensus size: 194
165338 TTTAAAAACA
** * * * * * *
165348 GGGTTGGAGTATCCCCGATAATGATAATTTGGAC--AAAATAAGATTTAAATTTTAATGAGTCTA
1 GGGTTGGAGTATCCTTGATGATGACAATTT-AACTGAAAATAAGATTTAAATTTTGATAAGTTTA
* *
165411 AAAATGGGGTTGGAATATCCCCTCGGAGGAATGGGGTTGGAGTGTCCCTGATGATGACAATTTAA
65 AAAATGGGGTTGGAGTATCCCCTCGGAGGAATGGGGTTGGAGTGTCCCCGATGATGACAATTTAA
* *
165476 CCGAAAATAAGATTCAAATTTTGATAAGTTTAAAAATGGGGTTAGAGTATCCCTTCGGAAGAATG
130 CCGAAAATAAGATTCAAATTTTGATAAGTTTAAAAACGGGGTTAGAGTATCCCCTCGGAAGAATG
* * *
165541 GGGTTGGAGTGTCC-TGATTATGACAATTTAAAC-GAAAATAAGATCTAAATTTTGATAAGTTTA
1 GGGTTGGAGTATCCTTGATGATGACAATTT-AACTGAAAATAAGATTTAAATTTTGATAAGTTTA
* * *
165604 AAAACGGGGTTAGAGTATCCCTTCGGAGGAATGGGGTTGGAGTGTCCCCGATGATGACAATTTAA
65 AAAATGGGGTTGGAGTATCCCCTCGGAGGAATGGGGTTGGAGTGTCCCCGATGATGACAATTTAA
* * * *
165669 CCGAAAATAAGATTTAAATTTTGATAAGTTTAAAAGCGGGGTTGGAGTATCCCCTCGGAGGAATG
130 CCGAAAATAAGATTCAAATTTTGATAAGTTTAAAAACGGGGTTAGAGTATCCCCTCGGAAGAATG
*
165734 GGGTTGGTGTATCCTTGATGATGACAATTTAACTGAAAATAAGATTTAAATTTTGATAAGTTTAA
1 GGGTTGGAGTATCCTTGATGATGACAATTTAACTGAAAATAAGATTTAAATTTTGATAAGTTTAA
* * * * * *
165799 AAGTGGGGTTGGCGTATCCCCTAGGAGAAATGGGGTTGGTGTATCCCCGAT
66 AAATGGGGTTGGAGTATCCCCTCGGAGGAATGGGGTTGGAGTGTCCCCGAT
165850 AAACAAAATT
Statistics
Matches: 272, Mismatches: 34, Indels: 5
0.87 0.11 0.02
Matches are distributed among these distances:
192 14 0.05
193 172 0.63
194 86 0.32
ACGTcount: A:0.32, C:0.12, G:0.26, T:0.30
Consensus pattern (194 bp):
GGGTTGGAGTATCCTTGATGATGACAATTTAACTGAAAATAAGATTTAAATTTTGATAAGTTTAA
AAATGGGGTTGGAGTATCCCCTCGGAGGAATGGGGTTGGAGTGTCCCCGATGATGACAATTTAAC
CGAAAATAAGATTCAAATTTTGATAAGTTTAAAAACGGGGTTAGAGTATCCCCTCGGAAGAATG
Found at i:165844 original size:97 final size:97
Alignment explanation
Indices: 165348--165837 Score: 680
Period size: 97 Copynumber: 5.1 Consensus size: 97
165338 TTTAAAAACA
* * * * * * * *
165348 GGGTTGGAGTATCCCCGATAATGATAATTTGGA-C-AAAATAAGATTTAAATTTTAATGAGTCTA
1 GGGTTGGAGTGTCCCTGATGATGACAATTT-AACCGAAAATAAGATTTAAATTTTGATAAGTTTA
*
165411 AAAATGGGGTTGGAATATCCCCTCGGAGGAATG
65 AAAATGGGGTTGGAGTATCCCCTCGGAGGAATG
*
165444 GGGTTGGAGTGTCCCTGATGATGACAATTTAACCGAAAATAAGATTCAAATTTTGATAAGTTTAA
1 GGGTTGGAGTGTCCCTGATGATGACAATTTAACCGAAAATAAGATTTAAATTTTGATAAGTTTAA
* * *
165509 AAATGGGGTTAGAGTATCCCTTCGGAAGAATG
66 AAATGGGGTTGGAGTATCCCCTCGGAGGAATG
* * *
165541 GGGTTGGAGTGT-CCTGATTATGACAATTTAAACGAAAATAAGATCTAAATTTTGATAAGTTTAA
1 GGGTTGGAGTGTCCCTGATGATGACAATTTAACCGAAAATAAGATTTAAATTTTGATAAGTTTAA
* * *
165605 AAACGGGGTTAGAGTATCCCTTCGGAGGAATG
66 AAATGGGGTTGGAGTATCCCCTCGGAGGAATG
*
165637 GGGTTGGAGTGTCCCCGATGATGACAATTTAACCGAAAATAAGATTTAAATTTTGATAAGTTTAA
1 GGGTTGGAGTGTCCCTGATGATGACAATTTAACCGAAAATAAGATTTAAATTTTGATAAGTTTAA
**
165702 AAGCGGGGTTGGAGTATCCCCTCGGAGGAATG
66 AAATGGGGTTGGAGTATCCCCTCGGAGGAATG
* * * *
165734 GGGTTGGTGTATCCTTGATGATGACAATTTAACTGAAAATAAGATTTAAATTTTGATAAGTTTAA
1 GGGTTGGAGTGTCCCTGATGATGACAATTTAACCGAAAATAAGATTTAAATTTTGATAAGTTTAA
* * * *
165799 AAGTGGGGTTGGCGTATCCCCTAGGAGAAATG
66 AAATGGGGTTGGAGTATCCCCTCGGAGGAATG
165831 GGGTTGG
1 GGGTTGG
165838 TGTATCCCCG
Statistics
Matches: 356, Mismatches: 35, Indels: 5
0.90 0.09 0.01
Matches are distributed among these distances:
95 1 0.00
96 117 0.33
97 238 0.67
ACGTcount: A:0.33, C:0.11, G:0.26, T:0.30
Consensus pattern (97 bp):
GGGTTGGAGTGTCCCTGATGATGACAATTTAACCGAAAATAAGATTTAAATTTTGATAAGTTTAA
AAATGGGGTTGGAGTATCCCCTCGGAGGAATG
Done.