Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Scaffold1079
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 410574
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
File 2 of 3
Found at i:156583 original size:117 final size:117
Alignment explanation
Indices: 156363--156574 Score: 302
Period size: 117 Copynumber: 1.8 Consensus size: 117
156353 TGTGGCATCC
* * * * *
156363 CTTTCTTTTTAAAGCCTACATAAGTTGGCGCCACCTTTTTTCTCTTTTTAAGGCCACACAGGTTG
1 CTTTCTTTTTAAAGCCTACACAAGTTGGCGACACCTTTTTTCCCTCTTTAAGCCCACACAGGTTG
*
156428 ATGGCACTTCTTTTTTTTTCCTTTTCAAAGGCCACACAATTTGGTGGCACTT
66 ATGGCACCTCTTTTTTTTTCCTTTTCAAAGGCCACACAATTTGGTGGCACTT
* *
156480 CTTTCTTTTTAAAGCCTGCACAAGTTGGCGACACC-TTTTTCCCTCTTTAAGCCCACACATGTTG
1 CTTTCTTTTTAAAGCCTACACAAGTTGGCGACACCTTTTTTCCCTCTTTAAGCCCACACAGGTTG
* *
156544 GTGGTACCTCTTTCTTTTTTCCCTTTT-AAAG
66 ATGGCACCTCTTT-TTTTTT-CCTTTTCAAAG
156575 CCTGCACAAG
Statistics
Matches: 83, Mismatches: 10, Indels: 4
0.86 0.10 0.04
Matches are distributed among these distances:
116 35 0.42
117 42 0.51
118 6 0.07
ACGTcount: A:0.19, C:0.25, G:0.15, T:0.41
Consensus pattern (117 bp):
CTTTCTTTTTAAAGCCTACACAAGTTGGCGACACCTTTTTTCCCTCTTTAAGCCCACACAGGTTG
ATGGCACCTCTTTTTTTTTCCTTTTCAAAGGCCACACAATTTGGTGGCACTT
Found at i:156602 original size:117 final size:117
Alignment explanation
Indices: 156363--156625 Score: 280
Period size: 117 Copynumber: 2.2 Consensus size: 117
156353 TGTGGCATCC
* * * * *
156363 CTTTCTTTTTAAAGCCTACATAAGTTGGCGCCACCTTTTTTCTCTTTTTAAGGCCACACAGGTTG
1 CTTTCTTTTTAAAGCCTACACAAGTTGGCGACACCTTTTTTCCCTCTTTAAGCCCACACAGGTTG
* ** * * *
156428 ATGGCACTTCTTTTTTTTTCCTTTTCAAAGGCCACACAATTTGGTGGCACTT
66 ATGGCACCTCTTTTTTTTTCCTTTTCAAAGGCCACACAAGATGGCGACACCT
* *
156480 CTTTCTTTTTAAAGCCTGCACAAGTTGGCGACACC-TTTTTCCCTCTTTAAGCCCACACATGTTG
1 CTTTCTTTTTAAAGCCTACACAAGTTGGCGACACCTTTTTTCCCTCTTTAAGCCCACACAGGTTG
* * * *
156544 GTGGTACCTCTTTCTTTTTTCCCTTTT-AAA-GCCTGCACAAGATGGCGATACCT
66 ATGGCACCTCTTT-TTTTTT-CCTTTTCAAAGGCC-ACACAAGATGGCGACACCT
* * * *
156597 GTTTCTCTTTTTAAGCCCACGCAAGTTGG
1 CTTTCT-TTTTAAAGCCTACACAAGTTGG
156626 TGGCACCCTT
Statistics
Matches: 120, Mismatches: 22, Indels: 7
0.81 0.15 0.05
Matches are distributed among these distances:
116 38 0.32
117 58 0.48
118 24 0.20
ACGTcount: A:0.19, C:0.26, G:0.16, T:0.39
Consensus pattern (117 bp):
CTTTCTTTTTAAAGCCTACACAAGTTGGCGACACCTTTTTTCCCTCTTTAAGCCCACACAGGTTG
ATGGCACCTCTTTTTTTTTCCTTTTCAAAGGCCACACAAGATGGCGACACCT
Found at i:156814 original size:37 final size:37
Alignment explanation
Indices: 156711--157483 Score: 230
Period size: 37 Copynumber: 19.8 Consensus size: 37
156701 GCTAGCGGTA
* * *
156711 CTTTTTCCCTCTTTAAGCCCACACAGGTTGGTGGCACT
1 CTTTTTCTCTTTTTAAGCCCACACAAGTTGGTGGCA-T
* * * ** *
156749 TTTTTTTTCTTTTTCAAAGCTCGTAAAAGTTGGTGGCAT
1 CTTTTTCTCTTTTT--AAGCCCACACAAGTTGGTGGCAT
* *
156788 CTTTTTCTCTTTTTAAGCCCACAAAAGTTGATGGCACCCTTTT
1 CTTTTTCTCTTTTTAAGCCCACACAAGTTGGTGGCA------T
* *
156831 CTTTTT-TGCTTTTTAAAGCCCACACAAGTTGGTAGCAC
1 CTTTTTCT-CTTTTT-AAGCCCACACAAGTTGGTGGCAT
* * ** * *
156869 CTCTTTCT-TTTTAAAG-CCAGCACAACCTGGCGGCAC
1 CTTTTTCTCTTTTTAAGCCCA-CACAAGTTGGTGGCAT
* * * * *
156905 CTTTTTCCCTCTTTAAGCCCACACATGTTGGTGTCAC
1 CTTTTTCTCTTTTTAAGCCCACACAAGTTGGTGGCAT
* * *
156942 CTTTTTCTTTTTTCTTTTTTAAAGCCCGCACAAGTTGGTAGCAC
1 CTTTTTC-----TC-TTTTT-AAGCCCACACAAGTTGGTGGCAT
* *
156986 CTTTTTCTCTTTTTAAGCTCACACAAGTTAGTGGCACCCTTTT
1 CTTTTTCTCTTTTTAAGCCCACACAAGTTGGTGGCA------T
* * * *
157029 CTTTTT-TCCTTTTAAGCGCACATAGGTTGGTGGCACCT
1 CTTTTTCTCTTTTTAAGCCCACACAAGTTGGTGGCA--T
* * * * *
157067 CTTTTTTTCCCTTTTTAAAGCTCGCACAAGTTGGCGACATT
1 C--TTTTTCTCTTTTT-AAGCCCACACAAGTTGGTGGCA-T
* *
157108 TTTTTTCTCTTTTTAAGCCCACACAAGTTGGTGACAT
1 CTTTTTCTCTTTTTAAGCCCACACAAGTTGGTGGCAT
* ** *** * *
157145 CCTTTTTTTCCCCATTTCAAAGGTTACATAAGTTGGTGGCAC
1 -C--TTTTT-CTC-TTTTTAAGCCCACACAAGTTGGTGGCAT
** * * ** * * *
157187 CCCTTTCT-TTTTGAAGCTCGTACAAGCTGGCGGCAC
1 CTTTTTCTCTTTTTAAGCCCACACAAGTTGGTGGCAT
* * * *
157223 CTTTTTTCTCTTTTTAAGCGCACATAAGTTGGTGATACCTT
1 C-TTTTTCTCTTTTTAAGCCCACACAAGTTGGTG---GCAT
* * * * *
157264 TTTTTTTTCTTTTCAAAGCCCACACAAGTTGATGGCAC
1 CTTTTTCTCTTTT-TAAGCCCACACAAGTTGGTGGCAT
* ** * * * *
157302 CTTTTTCT-TTTTAAAGCCCGGACAAGCTGGCGGTAC
1 CTTTTTCTCTTTTTAAGCCCACACAAGTTGGTGGCAT
* ***
157338 CTTTTTCTCTTTTTAAGTCCACATGGGTTGGTGGCACCT
1 CTTTTTCTCTTTTTAAGCCCACACAAGTTGGTGGCA--T
* * * *
157377 CTTTTCTTTCCCTTTTCAAACCCCACACAAGTTGGTGGCAC
1 C--TT-TTTCTCTTTT-TAAGCCCACACAAGTTGGTGGCAT
* * * ** * * * * *
157418 CCTCTTCT-TTTTAAAGCCCGTA-GAGCTGGTAGTAA
1 CTTTTTCTCTTTTTAAGCCCACACAAGTTGGTGGCAT
* *
157453 CTTTTTCTCTTTTTAAGCCCATACAGGTTGG
1 CTTTTTCTCTTTTTAAGCCCACACAAGTTGG
157484 CGGTGTCATA
Statistics
Matches: 530, Mismatches: 154, Indels: 103
0.67 0.20 0.13
Matches are distributed among these distances:
35 17 0.03
36 86 0.16
37 99 0.19
38 72 0.14
39 33 0.06
40 38 0.07
41 29 0.05
42 71 0.13
43 40 0.08
44 45 0.08
ACGTcount: A:0.19, C:0.25, G:0.16, T:0.39
Consensus pattern (37 bp):
CTTTTTCTCTTTTTAAGCCCACACAAGTTGGTGGCAT
Found at i:156852 original size:44 final size:43
Alignment explanation
Indices: 156787--156880 Score: 120
Period size: 44 Copynumber: 2.2 Consensus size: 43
156777 GTTGGTGGCA
*
156787 TCTTTTTCTCTTTTTAAGCCCACAAAAGTTGATGGCACC-CTTT
1 TCTTTTTCTCTTTTTAAGCCCACAAAAGTTGATAGCACCTC-TT
* *
156830 TCTTTTT-TGCTTTTTAAAGCCCACACAAGTTGGTAGCACCTCTT
1 TCTTTTTCT-CTTTTT-AAGCCCACAAAAGTTGATAGCACCTCTT
156874 TCTTTTT
1 TCTTTTT
156881 AAAGCCAGCA
Statistics
Matches: 45, Mismatches: 3, Indels: 5
0.85 0.06 0.09
Matches are distributed among these distances:
42 1 0.02
43 13 0.29
44 30 0.67
45 1 0.02
ACGTcount: A:0.19, C:0.24, G:0.12, T:0.45
Consensus pattern (43 bp):
TCTTTTTCTCTTTTTAAGCCCACAAAAGTTGATAGCACCTCTT
Found at i:156925 original size:117 final size:118
Alignment explanation
Indices: 156783--157011 Score: 320
Period size: 117 Copynumber: 1.9 Consensus size: 118
156773 AAAAGTTGGT
* * *
156783 GGCATCTTTTTCTCTTTTTAAGCCCACAAAAGTTGATGGCACCCTTTTCTTTTTTGC-TTTTTAA
1 GGCACCTTTTTCCCTCTTTAAGCCCACAAAAGTTGATGGCACCCTTTTCTTTTTT-CTTTTTTAA
156847 AGCCCACACAAGTTGGTAGCACCTCTTTCT-TTTTAAAGC-CAGCACAACCTGGC
65 AGCCCACACAAGTTGGTAGCACCTCTTTCTCTTTTAAAGCTCA-CACAACCTGGC
* * * * *
156900 GGCACCTTTTTCCCTCTTTAAGCCCACACATGTTGGTGTCACCTTTTTCTTTTTTCTTTTTTAAA
1 GGCACCTTTTTCCCTCTTTAAGCCCACAAAAGTTGATGGCACCCTTTTCTTTTTTCTTTTTTAAA
* * *
156965 GCCCGCACAAGTTGGTAGCACCTTTTTCTCTTTTTAAGCTCACACAA
66 GCCCACACAAGTTGGTAGCACCTCTTTCTCTTTTAAAGCTCACACAA
157012 GTTAGTGGCA
Statistics
Matches: 98, Mismatches: 11, Indels: 5
0.86 0.10 0.04
Matches are distributed among these distances:
116 1 0.01
117 82 0.84
118 13 0.13
119 2 0.02
ACGTcount: A:0.21, C:0.27, G:0.14, T:0.39
Consensus pattern (118 bp):
GGCACCTTTTTCCCTCTTTAAGCCCACAAAAGTTGATGGCACCCTTTTCTTTTTTCTTTTTTAAA
GCCCACACAAGTTGGTAGCACCTCTTTCTCTTTTAAAGCTCACACAACCTGGC
Found at i:156954 original size:44 final size:45
Alignment explanation
Indices: 156905--156999 Score: 115
Period size: 44 Copynumber: 2.1 Consensus size: 45
156895 CTGGCGGCAC
*
156905 CTTTTTCCCTCTTT-AAGCCCACACATGTTGGT-GTCACCTTTTTCT
1 CTTTTT-CCTCTTTAAAGCCCACACAAGTTGGTAG-CACCTTTTTCT
* * *
156950 -TTTTTCTTTTTTAAAGCCCGCACAAGTTGGTAGCACCTTTTTCT
1 CTTTTTCCTCTTTAAAGCCCACACAAGTTGGTAGCACCTTTTTCT
156994 CTTTTT
1 CTTTTT
157000 AAGCTCACAC
Statistics
Matches: 43, Mismatches: 4, Indels: 6
0.81 0.08 0.11
Matches are distributed among these distances:
43 5 0.12
44 32 0.74
45 6 0.14
ACGTcount: A:0.15, C:0.26, G:0.12, T:0.47
Consensus pattern (45 bp):
CTTTTTCCTCTTTAAAGCCCACACAAGTTGGTAGCACCTTTTTCT
Found at i:157062 original size:42 final size:44
Alignment explanation
Indices: 156986--157071 Score: 113
Period size: 42 Copynumber: 2.0 Consensus size: 44
156976 TTGGTAGCAC
* *
156986 CTTTTTCTCTTTTTAAGCTCACACAAGTTAGTGGCACC-CTTTT
1 CTTTTTCTCCTTTTAAGCGCACACAAGTTAGTGGCACCTCTTTT
* * *
157029 CTTTTT-TCCTTTTAAGCGCACATAGGTTGGTGGCACCTCTTTT
1 CTTTTTCTCCTTTTAAGCGCACACAAGTTAGTGGCACCTCTTTT
157072 TTTCCCTTTT
Statistics
Matches: 37, Mismatches: 5, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
42 26 0.70
43 11 0.30
ACGTcount: A:0.16, C:0.24, G:0.15, T:0.44
Consensus pattern (44 bp):
CTTTTTCTCCTTTTAAGCGCACACAAGTTAGTGGCACCTCTTTT
Found at i:157110 original size:38 final size:38
Alignment explanation
Indices: 157068--157156 Score: 115
Period size: 38 Copynumber: 2.3 Consensus size: 38
157058 GTGGCACCTC
* *
157068 TTTTTTTCCCTTTTTAAAGCTCGCACAAGTTGGCGACAT
1 TTTTTTTCCCTTTTT-AAGCCCACACAAGTTGGCGACAT
* *
157107 TTTTTTTCTCTTTTTAAGCCCACACAAGTTGGTGACAT
1 TTTTTTTCCCTTTTTAAGCCCACACAAGTTGGCGACAT
157145 CCTTTTTTTCCC
1 --TTTTTTTCCC
157157 CATTTCAAAG
Statistics
Matches: 43, Mismatches: 5, Indels: 3
0.84 0.10 0.06
Matches are distributed among these distances:
38 20 0.47
39 14 0.33
40 9 0.21
ACGTcount: A:0.18, C:0.25, G:0.12, T:0.45
Consensus pattern (38 bp):
TTTTTTTCCCTTTTTAAGCCCACACAAGTTGGCGACAT
Found at i:157252 original size:116 final size:113
Alignment explanation
Indices: 156952--157475 Score: 437
Period size: 116 Copynumber: 4.5 Consensus size: 113
156942 CTTTTTCTTT
* * ** * *
156952 TTTCTTTTTTAAAGCCCGCACAAGTTGGTAGCACCTTTTTCTCTTTTTAAGCTCACACAAGTTAG
1 TTTC-TTTTTAAAGCCCGTACAAGCTGGCGGCACCTTTTTCTCTTTTTAAGC-CACATAAGTTGG
* * * * * *
157017 TGGCACCCTTTTCTTTTTTCCTTTT--AAGCGCACATAGGTTGGTGGCACCTCTTTT
64 TGACA-CC-TTT-TTTTTCCCTTTTCAAAGCCCACACAAGTTGGTGGCACC-C---C
* * * * ** *
157072 TTTCCCTTTTTAAAGCTCGCACAAGTTGGCGACATTTTTTTTCTCTTTTTAAGCCCACACAAGTT
1 TTT--CTTTTTAAAGCCCGTACAAGCTGGCGGCA-CCTTTTTCTCTTTTTAAG-CCACATAAGTT
* * *** *
157137 GGTGACATCCTTTTTTTCCCCATTTCAAAGGTTACATAAGTTGGTGGCACCCC
62 GGTGACA-CCTTTTTTTTCCCTTTTCAAAGCCCACACAAGTTGGTGGCACCCC
* *
157190 TTTCTTTTTGAAGCTCGTACAAGCTGGCGGCACCTTTTTTCTCTTTTTAAGCGCACATAAGTTGG
1 TTTCTTTTTAAAGCCCGTACAAGCTGGCGGCACC-TTTTTCTCTTTTTAAGC-CACATAAGTTGG
* ** * **
157255 TGATACCTTTTTTTTTTCTTTTCAAAGCCCACACAAGTTGATGGCACCTT
64 TGACACCTTTTTTTTCCCTTTTCAAAGCCCACACAAGTTGGTGGCACCCC
* * **
157305 TTTCTTTTTAAAGCCCGGACAAGCTGGCGGTACCTTTTTCTCTTTTTAAGTCCACATGGGTTGGT
1 TTTCTTTTTAAAGCCCGTACAAGCTGGCGGCACCTTTTTCTCTTTTTAAG-CCACATAAGTTGGT
* *
157370 GGCACCTCTTTTCTTTCCCTTTTCAAACCCCACACAAGTTGGTGGCA-CCC
65 GACACCT-TTTT-TTTCCCTTTTCAAAGCCCACACAAGTTGGTGGCACCCC
* ** * *
157420 TCTTCTTTTTAAAGCCCGTA-GAGCTGGTAGTAACTTTTTCTCTTTTTAAGCC-CATA
1 T-TTCTTTTTAAAGCCCGTACAAGCTGGCGGCACCTTTTTCTCTTTTTAAGCCACATA
157476 CAGGTTGGCG
Statistics
Matches: 336, Mismatches: 56, Indels: 31
0.79 0.13 0.07
Matches are distributed among these distances:
113 3 0.01
114 34 0.10
115 98 0.29
116 103 0.31
118 3 0.01
120 12 0.04
121 28 0.08
122 54 0.16
123 1 0.00
ACGTcount: A:0.19, C:0.25, G:0.16, T:0.40
Consensus pattern (113 bp):
TTTCTTTTTAAAGCCCGTACAAGCTGGCGGCACCTTTTTCTCTTTTTAAGCCACATAAGTTGGTG
ACACCTTTTTTTTCCCTTTTCAAAGCCCACACAAGTTGGTGGCACCCC
Found at i:157291 original size:79 final size:78
Alignment explanation
Indices: 156872--157307 Score: 275
Period size: 81 Copynumber: 5.5 Consensus size: 78
156862 GTAGCACCTC
** * * * *
156872 TTTCTTTTTAAAG-CCAGCACAACCTGGCGGCACC-TTTTTCCCTCTTTAAGCCCACACATGTTG
1 TTTCTTTTTAAAGCCCA-CACAAGTTGGTGGCACCTTTTTTCCCTTTTTAAGCGCACACAAGTTG
156935 GTGTCACCTTTTTCTTT
65 GTG-CACC-TTTT-TTT
* * * * *
156952 TTTCTTTTTTAAAGCCCGCACAAGTTGGTAGCACC-TTTTTCTCTTTTTAAGCTCACACAAGTTA
1 TTTC-TTTTTAAAGCCCACACAAGTTGGTGGCACCTTTTTTCCCTTTTTAAGCGCACACAAGTTG
157016 GTGGCACCCTTTTCTTT
65 GT-GCA-CCTTTT-TTT
* * * * * *
157033 TTTCCTTTT-AAGCGCACATAGGTTGGTGGCACCTCTTTTTTTCCCTTTTTAAAGCTCGCACAAG
1 TTTCTTTTTAAAGCCCACACAAGTTGGTGGCA-C-C-TTTTTTCCCTTTTT-AAGCGCACACAAG
* *
157097 TTGGCG-ACATTTTTTT
62 TTGGTGCACCTTTTTTT
* * ** * *
157113 TCTCTTTTT-AAGCCCACACAAGTTGGTGACATCCTTTTTTTCCCCATTTCAAAG-GTTACATAA
1 TTTCTTTTTAAAGCCCACACAAGTTGGTGGCA-CC-TTTTTT-CCC-TTTTTAAGCG-CACACAA
**
157176 GTTGGTGGCACC-----CC
61 GTTGGT-GCACCTTTTTTT
* * ** * * * *
157190 TTTCTTTTTGAAGCTCGTACAAGCTGGCGGCACCTTTTTTCTCTTTTTAAGCGCACATAAGTTGG
1 TTTCTTTTTAAAGCCCACACAAGTTGGTGGCACCTTTTTTCCCTTTTTAAGCGCACACAAGTTGG
*
157255 TGATACCTTTTTTT
66 TG-CACCTTTTTTT
* *
157269 TTTCTTTTCAAAGCCCACACAAGTTGATGGCACCTTTTT
1 TTTCTTTTTAAAGCCCACACAAGTTGGTGGCACCTTTTT
157308 CTTTTTAAAG
Statistics
Matches: 274, Mismatches: 60, Indels: 45
0.72 0.16 0.12
Matches are distributed among these distances:
73 1 0.00
74 21 0.08
75 3 0.01
76 6 0.02
77 10 0.04
78 16 0.06
79 56 0.20
80 53 0.19
81 72 0.26
82 8 0.03
83 13 0.05
84 15 0.05
ACGTcount: A:0.19, C:0.25, G:0.15, T:0.40
Consensus pattern (78 bp):
TTTCTTTTTAAAGCCCACACAAGTTGGTGGCACCTTTTTTCCCTTTTTAAGCGCACACAAGTTGG
TGCACCTTTTTTT
Found at i:157293 original size:41 final size:40
Alignment explanation
Indices: 157224--157313 Score: 99
Period size: 41 Copynumber: 2.2 Consensus size: 40
157214 TGGCGGCACC
* * * * * *
157224 TTTTTTCTCTTTTTAAGCGCACATAAGTTGGTGATACCTT
1 TTTTTTTTCTTTTAAAGCCCACACAAGTTGATGACACCTT
*
157264 TTTTTTTTCTTTTCAAAGCCCACACAAGTTGATGGCACCTT
1 TTTTTTTTCTTTT-AAAGCCCACACAAGTTGATGACACCTT
157305 TTTCTTTTT
1 TTT-TTTTT
157314 AAAGCCCGGA
Statistics
Matches: 41, Mismatches: 7, Indels: 2
0.82 0.14 0.04
Matches are distributed among these distances:
40 12 0.29
41 24 0.59
42 5 0.12
ACGTcount: A:0.19, C:0.20, G:0.12, T:0.49
Consensus pattern (40 bp):
TTTTTTTTCTTTTAAAGCCCACACAAGTTGATGACACCTT
Found at i:157318 original size:36 final size:36
Alignment explanation
Indices: 157174--157436 Score: 139
Period size: 36 Copynumber: 6.9 Consensus size: 36
157164 AAGGTTACAT
** * * **
157174 AAGTTGGTGGCACCCCTTTCTTTTTGAAGCTCGTAC
1 AAGTTGGTGGCACCTTTTTCTTTTTAAAGCCCACAC
* * * * *
157210 AAGCTGGCGGCACCTTTTTTCTCTTTTTAAGCGCACAT
1 AAGTTGGTGGCACC-TTTTTCT-TTTTAAAGCCCACAC
** *
157248 AAGTTGGTGATACCTTTTTTTTTTCTTTTCAAAGCCCACAC
1 AAGTTGGTGGCACC-----TTTTTCTTTTTAAAGCCCACAC
* **
157289 AAGTTGATGGCACCTTTTTCTTTTTAAAGCCCGGAC
1 AAGTTGGTGGCACCTTTTTCTTTTTAAAGCCCACAC
* * * * * *
157325 AAGCTGGCGGTACCTTTTTCTCTTTTTAAGTCCACAT
1 AAGTTGGTGGCACCTTTTTCT-TTTTAAAGCCCACAC
** *
157362 GGGTTGGTGGCACCTCTTTTCTTTCCCTTTTCAAACCCCACAC
1 AAGTTGGTGGCACCT-TTTTC--T---TTTT-AAAGCCCACAC
* *
157405 AAGTTGGTGGCACCCTCTTCTTTTTAAAGCCC
1 AAGTTGGTGGCACCTTTTTCTTTTTAAAGCCC
157437 GTAGAGCTGG
Statistics
Matches: 168, Mismatches: 46, Indels: 26
0.70 0.19 0.11
Matches are distributed among these distances:
36 54 0.32
37 29 0.17
38 25 0.15
40 2 0.01
41 22 0.13
42 17 0.10
43 19 0.11
ACGTcount: A:0.19, C:0.26, G:0.17, T:0.38
Consensus pattern (36 bp):
AAGTTGGTGGCACCTTTTTCTTTTTAAAGCCCACAC
Found at i:158595 original size:79 final size:79
Alignment explanation
Indices: 158453--159161 Score: 429
Period size: 79 Copynumber: 9.1 Consensus size: 79
158443 TTTAGAGTTA
* * * * *
158453 AAAAT-GGGGTTGAAGCATCTCCTC-GAAAACAACGGGGTTGGAGTATCCCTAATGGT-GAGAAA
1 AAAATCGGGGTTGGAGTATCTCCTCAG-AAATAACGGGGTTGGAGTATCCCTGATAGTGGA-AAA
158515 TCAGTATTTT-GAAAAT
64 TCAGTATTTTAG-AAAT
*
158531 AAAAAT-GGGGTTGGAGTATCTCCTCAGAAATAACGGGGTTGGAGTATCCTTGATAGTGGAAAAT
1 -AAAATCGGGGTTGGAGTATCTCCTCAGAAATAACGGGGTTGGAGTATCCCTGATAGTGGAAAAT
* *
158595 CAATGTTTTAGAAAT
65 CAGTATTTTAGAAAT
* * ** ** **** **
158610 AAAATCGAGGTTGGAGTATC-CCT---TAATAGTGGAAAATT-GATGT-TTTAGGA-A-TAAAAA
1 AAAATCGGGGTTGGAGTATCTCCTCAGAAATAACGG--GGTTGGA-GTATCCCTGATAGT-GGAA
* * * *
158667 AATCGGTGTTTTGGGAAT
62 AATCAGTATTTTAGAAAT
* * * * * * *
158685 AAAATCGGGGTTAGAGTATC-CCTTCTGAAATAACAGGGTTGAAGTATCCCCGATGGTGAAAAAT
1 AAAATCGGGGTTGGAGTATCTCC-TCAGAAATAACGGGGTTGGAGTATCCCTGATAGTGGAAAAT
* *
158749 CAATGTTTTAGAAAT
65 CAGTATTTTAGAAAT
* * * * * *
158764 AAAATCGGGGTTAGAGTATCAT-CTC-GAAAATAATGAGGTTGGAGTATCCCTAATGGTGGAAAT
1 AAAATCGGGGTTGGAGTATC-TCCTCAG-AAATAACGGGGTTGGAGTATCCCTGATAGTGGAAAA
*
158827 TGA-TATTTTAGAAAT
64 TCAGTATTTTAGAAAT
** * * ** * *
158842 AAAATAAGGGTTGGTGTAT-TCCCTTAGAAATAACAAGATTGGAGTATCCATGATAGTGGAAAAA
1 AAAATCGGGGTTGGAGTATCT-CCTCAGAAATAACGGGGTTGGAGTATCCCTGATAGTGG-AAAA
* *
158906 TC-GATGTTTTAGGAAT
64 TCAG-TATTTTAGAAAT
* * * ** * * *
158922 AAAACCGAGGTTGGAGTATCTCCTCAAAAATAATAGGGTAGGAGTATCCCTGATAGTGAAAAATT
1 AAAATCGGGGTTGGAGTATCTCCTCAGAAATAACGGGGTTGGAGTATCCCTGATAGTGGAAAATC
* ** *
158987 AATGCTTTAGGAAT
66 AGTATTTTAGAAAT
* * *
159001 AAAATCGGGGTTGGAGTATCCCCTCAAAAATAACAGGGTTGGAGTATCCCTGAT-GATGG-AAAT
1 AAAATCGGGGTTGGAGTATCTCCTCAGAAATAACGGGGTTGGAGTATCCCTGATAG-TGGAAAAT
** *
159064 TGGTATGTTAGAAAT
65 CAGTATTTTAGAAAT
* * * * * *
159079 AAAATTGGGGTTGGAGTATCCCCTTAGAAATAATGGGGTTGGACTAT-CCTCGATGGTGGAAAAT
1 AAAATCGGGGTTGGAGTATCTCCTCAGAAATAACGGGGTTGGAGTATCCCT-GATAGTGGAAAAT
*
159143 -TGATATTTTAGAAAT
65 CAG-TATTTTAGAAAT
159158 AAAA
1 AAAA
159162 ATATTAATGA
Statistics
Matches: 494, Mismatches: 104, Indels: 64
0.75 0.16 0.10
Matches are distributed among these distances:
74 1 0.00
75 43 0.09
76 7 0.01
77 11 0.02
78 129 0.26
79 242 0.49
80 60 0.12
81 1 0.00
ACGTcount: A:0.36, C:0.11, G:0.25, T:0.29
Consensus pattern (79 bp):
AAAATCGGGGTTGGAGTATCTCCTCAGAAATAACGGGGTTGGAGTATCCCTGATAGTGGAAAATC
AGTATTTTAGAAAT
Found at i:158627 original size:51 final size:52
Alignment explanation
Indices: 158567--158665 Score: 155
Period size: 52 Copynumber: 1.9 Consensus size: 52
158557 GAAATAACGG
*
158567 GGTTGGAGTAT-CCTTGATAGTGGAAAATCAATGTTTTAGAAATAAAATCGA
1 GGTTGGAGTATCCCTTAATAGTGGAAAATCAATGTTTTAGAAATAAAATCGA
** *
158618 GGTTGGAGTATCCCTTAATAGTGGAAAATTGATGTTTTAGGAATAAAA
1 GGTTGGAGTATCCCTTAATAGTGGAAAATCAATGTTTTAGAAATAAAA
158666 AAATCGGTGT
Statistics
Matches: 43, Mismatches: 4, Indels: 1
0.90 0.08 0.02
Matches are distributed among these distances:
51 11 0.26
52 32 0.74
ACGTcount: A:0.36, C:0.07, G:0.24, T:0.32
Consensus pattern (52 bp):
GGTTGGAGTATCCCTTAATAGTGGAAAATCAATGTTTTAGAAATAAAATCGA
Found at i:158668 original size:23 final size:23
Alignment explanation
Indices: 158642--158688 Score: 67
Period size: 23 Copynumber: 2.0 Consensus size: 23
158632 TTAATAGTGG
*
158642 AAAATTGATGTTTTAGGAATAAA
1 AAAATCGATGTTTTAGGAATAAA
* *
158665 AAAATCGGTGTTTTGGGAATAAA
1 AAAATCGATGTTTTAGGAATAAA
158688 A
1 A
158689 TCGGGGTTAG
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
23 21 1.00
ACGTcount: A:0.45, C:0.02, G:0.21, T:0.32
Consensus pattern (23 bp):
AAAATCGATGTTTTAGGAATAAA
Found at i:159004 original size:237 final size:237
Alignment explanation
Indices: 158664--159111 Score: 612
Period size: 237 Copynumber: 1.9 Consensus size: 237
158654 TTAGGAATAA
* * * * ** *
158664 AAAAATCGGTGTTTTGGGAATAAAATCGGGGTTAGAGTATCCCTTCTGAAATAACAGGGTTGAAG
1 AAAAATCGATGTTTTAGGAATAAAACCGAGGTTAGAGTATCCCTTCAAAAATAACAGGGTAGAAG
* * * *
158729 TATCCCCGATGGTGAAAAATCAATGTTTTAGAAATAAAATCGGGGTTAGAGTATCATCTCGAAAA
66 TATCCCCGATAGTGAAAAATCAATGCTTTAGAAATAAAATCGGGGTTAGAGTATCACCTCAAAAA
* * * *
158794 TAA-TGAGGTTGGAGTATCCCTAATGGTGGAAATTGATATTTTAGAAATAAAATAAGGGTTGGTG
131 TAACAG-GGTTGGAGTATCCCTAATGATGGAAATTGATATGTTAGAAATAAAATAAGGGTTGGAG
*
158858 TATTCCCTTAGAAATAACAAGATTGGAGTATCCATGATAGTGG
195 TATCCCCTTAGAAATAACAAGATTGGAGTATCCATGATAGTGG
* * *
158901 AAAAATCGATGTTTTAGGAATAAAACCGAGGTTGGAGTATCTCC-TCAAAAATAATAGGGTAGGA
1 AAAAATCGATGTTTTAGGAATAAAACCGAGGTTAGAGTATC-CCTTCAAAAATAACAGGGTAGAA
* * * * *
158965 GTATCCCTGATAGTGAAAAATTAATGCTTTAGGAATAAAATCGGGGTTGGAGTATCCCCTCAAAA
65 GTATCCCCGATAGTGAAAAATCAATGCTTTAGAAATAAAATCGGGGTTAGAGTATCACCTCAAAA
* * **
159030 ATAACAGGGTTGGAGTATCCCTGATGATGGAAATTGGTATGTTAGAAATAAAATTGGGGTTGGAG
130 ATAACAGGGTTGGAGTATCCCTAATGATGGAAATTGATATGTTAGAAATAAAATAAGGGTTGGAG
159095 TATCCCCTTAGAAATAA
195 TATCCCCTTAGAAATAA
159112 TGGGGTTGGA
Statistics
Matches: 181, Mismatches: 28, Indels: 4
0.85 0.13 0.02
Matches are distributed among these distances:
237 178 0.98
238 3 0.02
ACGTcount: A:0.36, C:0.11, G:0.24, T:0.29
Consensus pattern (237 bp):
AAAAATCGATGTTTTAGGAATAAAACCGAGGTTAGAGTATCCCTTCAAAAATAACAGGGTAGAAG
TATCCCCGATAGTGAAAAATCAATGCTTTAGAAATAAAATCGGGGTTAGAGTATCACCTCAAAAA
TAACAGGGTTGGAGTATCCCTAATGATGGAAATTGATATGTTAGAAATAAAATAAGGGTTGGAGT
ATCCCCTTAGAAATAACAAGATTGGAGTATCCATGATAGTGG
Found at i:159140 original size:237 final size:237
Alignment explanation
Indices: 158664--159161 Score: 608
Period size: 237 Copynumber: 2.1 Consensus size: 237
158654 TTAGGAATAA
* * * * ** *
158664 AAAAATCGGTGTTTTGGGAATAAAATCGGGGTTAGAGTATCCCTTCTGAAATAACAGGGTTGAAG
1 AAAAATCGATGTTTTAGGAATAAAACCGAGGTTAGAGTATCCCTTCAAAAATAACAGGGTAGAAG
* * * *
158729 TATCCCCGATGGTGAAAAATCAATGTTTTAGAAATAAAATCGGGGTTAGAGTATCATCTCGAAAA
66 TATCCCCGATAGTGAAAAATCAATGCTTTAGAAATAAAATCGGGGTTAGAGTATCACCTCAAAAA
* * * *
158794 TAATGAGGTTGGAGTATCCCTAATGGTGGAAATTGATATTTTAGAAATAAAATAAGGGTTGGTGT
131 TAAAGAGGTTGGAGTATCCCTAATGATGGAAATTGATATGTTAGAAATAAAATAAGGGTTGGAGT
* *
158859 ATTCCCTTAGAAATAACAAGATTGGAGTATCCATGATAGTGG
196 ATCCCCTTAGAAATAACAAGATTGGACTATCCATGATAGTGG
* * *
158901 AAAAATCGATGTTTTAGGAATAAAACCGAGGTTGGAGTATCTCC-TCAAAAATAATAGGGTAGGA
1 AAAAATCGATGTTTTAGGAATAAAACCGAGGTTAGAGTATC-CCTTCAAAAATAACAGGGTAGAA
* * * * *
158965 GTATCCCTGATAGTGAAAAATTAATGCTTTAGGAATAAAATCGGGGTTGGAGTATCCCCTCAAAA
65 GTATCCCCGATAGTGAAAAATCAATGCTTTAGAAATAAAATCGGGGTTAGAGTATCACCTCAAAA
* * **
159030 ATAACAG-GGTTGGAGTATCCCTGATGATGGAAATTGGTATGTTAGAAATAAAATTGGGGTTGGA
130 ATAA-AGAGGTTGGAGTATCCCTAATGATGGAAATTGATATGTTAGAAATAAAATAAGGGTTGGA
*** * *
159094 GTATCCCCTTAGAAATAATGGGGTTGGACTATCC-TCGATGGTGG
194 GTATCCCCTTAGAAATAACAAGATTGGACTATCCAT-GATAGTGG
* * *
159138 -AAAATTGATATTTTAGAAATAAAA
1 AAAAATCGATGTTTTAGGAATAAAA
159162 ATATTAATGA
Statistics
Matches: 221, Mismatches: 37, Indels: 7
0.83 0.14 0.03
Matches are distributed among these distances:
236 22 0.10
237 196 0.89
238 3 0.01
ACGTcount: A:0.36, C:0.11, G:0.24, T:0.29
Consensus pattern (237 bp):
AAAAATCGATGTTTTAGGAATAAAACCGAGGTTAGAGTATCCCTTCAAAAATAACAGGGTAGAAG
TATCCCCGATAGTGAAAAATCAATGCTTTAGAAATAAAATCGGGGTTAGAGTATCACCTCAAAAA
TAAAGAGGTTGGAGTATCCCTAATGATGGAAATTGATATGTTAGAAATAAAATAAGGGTTGGAGT
ATCCCCTTAGAAATAACAAGATTGGACTATCCATGATAGTGG
Found at i:160711 original size:20 final size:20
Alignment explanation
Indices: 160688--160760 Score: 92
Period size: 20 Copynumber: 3.6 Consensus size: 20
160678 ACAATTCAAA
160688 GTATCGATACATGTTGCAAT
1 GTATCGATACATGTTGCAAT
*****
160708 GTATCGATACATAAAAAAGAT
1 GTATCGATACATGTTGCA-AT
160729 GTATCGATACATGTTGCAAT
1 GTATCGATACATGTTGCAAT
160749 GTATCGATACAT
1 GTATCGATACAT
160761 AAAAAAGTTG
Statistics
Matches: 42, Mismatches: 10, Indels: 2
0.78 0.19 0.04
Matches are distributed among these distances:
20 27 0.64
21 15 0.36
ACGTcount: A:0.37, C:0.14, G:0.18, T:0.32
Consensus pattern (20 bp):
GTATCGATACATGTTGCAAT
Found at i:160732 original size:21 final size:21
Alignment explanation
Indices: 160706--160781 Score: 91
Period size: 21 Copynumber: 3.7 Consensus size: 21
160696 ACATGTTGCA
160706 ATGTATCGATACATAAAAAAG
1 ATGTATCGATACATAAAAAAG
*****
160727 ATGTATCGATACATGTTGCA-
1 ATGTATCGATACATAAAAAAG
160747 ATGTATCGATACATAAAAAAG
1 ATGTATCGATACATAAAAAAG
*
160768 TTGTATCGATACAT
1 ATGTATCGATACAT
160782 TTCTTGGCAG
Statistics
Matches: 43, Mismatches: 11, Indels: 2
0.77 0.20 0.04
Matches are distributed among these distances:
20 15 0.35
21 28 0.65
ACGTcount: A:0.42, C:0.12, G:0.16, T:0.30
Consensus pattern (21 bp):
ATGTATCGATACATAAAAAAG
Found at i:160739 original size:41 final size:41
Alignment explanation
Indices: 160688--160781 Score: 179
Period size: 41 Copynumber: 2.3 Consensus size: 41
160678 ACAATTCAAA
160688 GTATCGATACATGTTGCAATGTATCGATACATAAAAAAGAT
1 GTATCGATACATGTTGCAATGTATCGATACATAAAAAAGAT
*
160729 GTATCGATACATGTTGCAATGTATCGATACATAAAAAAGTT
1 GTATCGATACATGTTGCAATGTATCGATACATAAAAAAGAT
160770 GTATCGATACAT
1 GTATCGATACAT
160782 TTCTTGGCAG
Statistics
Matches: 52, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
41 52 1.00
ACGTcount: A:0.39, C:0.13, G:0.17, T:0.31
Consensus pattern (41 bp):
GTATCGATACATGTTGCAATGTATCGATACATAAAAAAGAT
Found at i:160838 original size:13 final size:13
Alignment explanation
Indices: 160820--160845 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
160810 TACAGCAAGT
160820 ATGTATCGATACA
1 ATGTATCGATACA
160833 ATGTATCGATACA
1 ATGTATCGATACA
160846 CAAAAAATTG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.38, C:0.15, G:0.15, T:0.31
Consensus pattern (13 bp):
ATGTATCGATACA
Found at i:167012 original size:20 final size:21
Alignment explanation
Indices: 166933--167011 Score: 72
Period size: 20 Copynumber: 3.7 Consensus size: 21
166923 AATGTCCAAA
*
166933 ATGTATCGATACATGTTTT-T
1 ATGTATCGATACATCTTTTCT
* *
166953 GTGTATCGATACATCTGGAAATTCT
1 ATGTATCGATACATCT----TTTCT
166978 ATGTATCGATACAT-TTTTCT
1 ATGTATCGATACATCTTTTCT
*
166998 TTGTATCGATACAT
1 ATGTATCGATACAT
167012 TGTATCGATA
Statistics
Matches: 48, Mismatches: 6, Indels: 10
0.75 0.09 0.16
Matches are distributed among these distances:
20 31 0.65
24 3 0.06
25 14 0.29
ACGTcount: A:0.27, C:0.14, G:0.15, T:0.44
Consensus pattern (21 bp):
ATGTATCGATACATCTTTTCT
Found at i:167016 original size:13 final size:13
Alignment explanation
Indices: 166998--167036 Score: 69
Period size: 13 Copynumber: 3.0 Consensus size: 13
166988 ACATTTTTCT
166998 TTGTATCGATACA
1 TTGTATCGATACA
167011 TTGTATCGATACA
1 TTGTATCGATACA
*
167024 CTGTATCGATACA
1 TTGTATCGATACA
167037 GGGTGATTAT
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
13 25 1.00
ACGTcount: A:0.31, C:0.18, G:0.15, T:0.36
Consensus pattern (13 bp):
TTGTATCGATACA
Found at i:169498 original size:20 final size:20
Alignment explanation
Indices: 169475--169547 Score: 101
Period size: 20 Copynumber: 3.6 Consensus size: 20
169465 ACAATTCAAA
169475 GTATCGATACATGTTGCAAT
1 GTATCGATACATGTTGCAAT
****
169495 GTATCGATACATGAAAAAGAT
1 GTATCGATACATGTTGCA-AT
169516 GTATCGATACATGTTGCAAT
1 GTATCGATACATGTTGCAAT
169536 GTATCGATACAT
1 GTATCGATACAT
169548 AAAAAGTTGT
Statistics
Matches: 44, Mismatches: 8, Indels: 2
0.81 0.15 0.04
Matches are distributed among these distances:
20 28 0.64
21 16 0.36
ACGTcount: A:0.36, C:0.14, G:0.19, T:0.32
Consensus pattern (20 bp):
GTATCGATACATGTTGCAAT
Found at i:169526 original size:41 final size:40
Alignment explanation
Indices: 169475--169567 Score: 168
Period size: 41 Copynumber: 2.3 Consensus size: 40
169465 ACAATTCAAA
169475 GTATCGATACATGTTGCAATGTATCGATACATGAAAAAGAT
1 GTATCGATACATGTTGCAATGTATCGATACAT-AAAAAGAT
*
169516 GTATCGATACATGTTGCAATGTATCGATACATAAAAAGTT
1 GTATCGATACATGTTGCAATGTATCGATACATAAAAAGAT
169556 GTATCGATACAT
1 GTATCGATACAT
169568 TTCTTGGCAG
Statistics
Matches: 51, Mismatches: 1, Indels: 1
0.96 0.02 0.02
Matches are distributed among these distances:
40 19 0.37
41 32 0.63
ACGTcount: A:0.38, C:0.13, G:0.18, T:0.31
Consensus pattern (40 bp):
GTATCGATACATGTTGCAATGTATCGATACATAAAAAGAT
Found at i:169558 original size:20 final size:19
Alignment explanation
Indices: 169494--169567 Score: 69
Period size: 20 Copynumber: 3.7 Consensus size: 19
169484 CATGTTGCAA
169494 TGTATCGATACATGAAAAAG
1 TGTATCGATACAT-AAAAAG
***
169514 ATGTATCGATACATGTTGCAA-
1 -TGTATCGATACA--TAAAAAG
169535 TGTATCGATACATAAAAAG
1 TGTATCGATACATAAAAAG
169554 TTGTATCGATACAT
1 -TGTATCGATACAT
169568 TTCTTGGCAG
Statistics
Matches: 43, Mismatches: 6, Indels: 9
0.74 0.10 0.16
Matches are distributed among these distances:
18 3 0.07
20 25 0.58
21 12 0.28
22 2 0.05
23 1 0.02
ACGTcount: A:0.39, C:0.12, G:0.18, T:0.31
Consensus pattern (19 bp):
TGTATCGATACATAAAAAG
Found at i:169624 original size:13 final size:13
Alignment explanation
Indices: 169606--169631 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
169596 TACAGCAAGT
169606 ATGTATCGATACA
1 ATGTATCGATACA
169619 ATGTATCGATACA
1 ATGTATCGATACA
169632 CAAAAAATTG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.38, C:0.15, G:0.15, T:0.31
Consensus pattern (13 bp):
ATGTATCGATACA
Found at i:172386 original size:61 final size:61
Alignment explanation
Indices: 172120--172620 Score: 513
Period size: 61 Copynumber: 8.3 Consensus size: 61
172110 GAGAGAGGCA
* *
172120 TCCTGCTCTTTGAGGACT-AGAAGGTGCCACCAGCTTATGTGGGCTTTAAGAA--AAAAGAAGTG
1 TCCTGCTCTTTGAGGACTGA-AAGGTGCCACCAACTTGTGTGGGCTTTAA-AAGGAAAAG--GTG
* * * *
172182 TCCTGCTCTTCGAAGACTAAAAGGTGCCACCAACTTGTGTGGACTTTGAAAA-G-AAA-GTG
1 TCCTGCTCTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTT-AAAAGGAAAAGGTG
* * * *
172241 TCCTACTTTTTGAGGACT-AGAAGGTGCCACCAACTTGTGTGAGCTTTGAAAGG-AAA-GTG
1 TCCTGCTCTTTGAGGACTGA-AAGGTGCCACCAACTTGTGTGGGCTTTAAAAGGAAAAGGTG
* * * ** *
172300 TTCTGCTCCTTGAGGACT-AGAAGGTGTCACCAACTCATGTGGGCTTTAAAAGGAAAAGGCG
1 TCCTGCTCTTTGAGGACTGA-AAGGTGCCACCAACTTGTGTGGGCTTTAAAAGGAAAAGGTG
* * *
172361 TCCTGCTCTTTGAGGACTGAAAGGTGACACCAACTTGTGTGGGCTTTGAAAGGAGAAGGTG
1 TCCTGCTCTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTAAAAGGAAAAGGTG
* * * ** * ***
172422 TCTTGCTCTTTAAGGACTGAAAGGTACCACCAACTCATGTGGGCTTTAAAAGGGAAAGACA
1 TCCTGCTCTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTAAAAGGAAAAGGTG
**
172483 TCCTATTCTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTAAAAAGG-AAA-GTG
1 TCCTGCTCTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTT-AAAAGGAAAAGGTG
* * * * **
172543 TCCTACTTTTTGAGAACTGAAAGGTGCCACCAACTTGTATGGGCTTTAAAAGGAAAAGGCA
1 TCCTGCTCTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTAAAAGGAAAAGGTG
*
172604 TCTTGCTCTTTGAGGAC
1 TCCTGCTCTTTGAGGAC
172621 AAAAAGGATA
Statistics
Matches: 366, Mismatches: 62, Indels: 23
0.81 0.14 0.05
Matches are distributed among these distances:
58 4 0.01
59 99 0.27
60 49 0.13
61 159 0.43
62 52 0.14
63 3 0.01
ACGTcount: A:0.29, C:0.18, G:0.26, T:0.27
Consensus pattern (61 bp):
TCCTGCTCTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTAAAAGGAAAAGGTG
Found at i:172627 original size:121 final size:121
Alignment explanation
Indices: 172105--172627 Score: 549
Period size: 121 Copynumber: 4.3 Consensus size: 121
172095 TTTAAGATGG
* * * *
172105 AAAAGGAGAGAGGCATCCTGCTCTTTGAGGACTAGAAGGTGCCACCAGCTTATGTGGGCTTTAAG
1 AAAAGGA-AAAGGCATCCTGCTCTTTGAGGACTAAAAGGTGCCACCAACTTGTGTGGGCTTT-A-
** * * ** *
172170 AAAAAAGAAGTGTCCTGCTCTTCGA-AGACTAAAAGGTGCCACCAACTTGTGTGGACTTT
63 AAAGGAGAAGTGTCCTGCTCTTTGAGA-ACTGAAAGGTGCCACCAACTCATGTGGGCTTT
* * * * *
172229 GAAAA-G-AAAGTG--TCCTACTTTTTGAGGACTAGAAGGTGCCACCAACTTGTGTGAGCTTTGA
1 -AAAAGGAAAAG-GCATCCTGCTCTTTGAGGACTAAAAGGTGCCACCAACTTGTGTGGGCTTTAA
* * * *
172290 AAGGA-AAGTGTTCTGCTCCTTGAGGACT-AGAAGGTGTCACCAACTCATGTGGGCTTT
64 AAGGAGAAGTGTCCTGCTCTTTGAGAACTGA-AAGGTGCCACCAACTCATGTGGGCTTT
* * * *
172347 AAAAGGAAAAGGCGTCCTGCTCTTTGAGGACTGAAAGGTGACACCAACTTGTGTGGGCTTTGAAA
1 AAAAGGAAAAGGCATCCTGCTCTTTGAGGACTAAAAGGTGCCACCAACTTGTGTGGGCTTTAAAA
* * * *
172412 GGAGAAGGTGTCTTGCTCTTTAAGGACTGAAAGGTACCACCAACTCATGTGGGCTTT
66 GGAGAA-GTGTCCTGCTCTTTGAGAACTGAAAGGTGCCACCAACTCATGTGGGCTTT
* * ** *
172469 AAAAGGGAAAGACATCCTATTCTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTAAAA
1 AAAAGGAAAAGGCATCCTGCTCTTTGAGGACTAAAAGGTGCCACCAACTTGTGTGGGCTTT-AAA
* * ** *
172534 AGGA-AAGTGTCCTACTTTTTGAGAACTGAAAGGTGCCACCAACTTGTATGGGCTTT
65 AGGAGAAGTGTCCTGCTCTTTGAGAACTGAAAGGTGCCACCAACTCATGTGGGCTTT
* *
172590 AAAAGGAAAAGGCATCTTGCTCTTTGAGGACAAAAAGG
1 AAAAGGAAAAGGCATCCTGCTCTTTGAGGACTAAAAGG
172628 ATAAAAGGTT
Statistics
Matches: 335, Mismatches: 52, Indels: 26
0.81 0.13 0.06
Matches are distributed among these distances:
117 5 0.01
118 43 0.13
119 8 0.02
120 48 0.14
121 116 0.35
122 102 0.30
123 8 0.02
124 1 0.00
125 4 0.01
ACGTcount: A:0.30, C:0.18, G:0.27, T:0.26
Consensus pattern (121 bp):
AAAAGGAAAAGGCATCCTGCTCTTTGAGGACTAAAAGGTGCCACCAACTTGTGTGGGCTTTAAAA
GGAGAAGTGTCCTGCTCTTTGAGAACTGAAAGGTGCCACCAACTCATGTGGGCTTT
Found at i:173646 original size:21 final size:21
Alignment explanation
Indices: 173599--173651 Score: 63
Period size: 21 Copynumber: 2.5 Consensus size: 21
173589 TTAAGCAAGT
*
173599 TTTTTTTTCTTTTTTTCTTTC
1 TTTTTTTTGTTTTTTTCTTTC
**
173620 CATTTTTTGTTTATTTT-TTTC
1 TTTTTTTTGTTT-TTTTCTTTC
173641 TTTTTTTTGTT
1 TTTTTTTTGTT
173652 GTTGTTTTTT
Statistics
Matches: 26, Mismatches: 5, Indels: 2
0.79 0.15 0.06
Matches are distributed among these distances:
21 22 0.85
22 4 0.15
ACGTcount: A:0.04, C:0.09, G:0.04, T:0.83
Consensus pattern (21 bp):
TTTTTTTTGTTTTTTTCTTTC
Found at i:173659 original size:21 final size:20
Alignment explanation
Indices: 173622--173666 Score: 56
Period size: 21 Copynumber: 2.2 Consensus size: 20
173612 TTTCTTTCCA
*
173622 TTTTTTGTTTATTTTTTTCTT
1 TTTTTTGTTTATGTTTTT-TT
173643 TTTTTTGTTGT-TGTTTTTTT
1 TTTTTTGTT-TATGTTTTTTT
173663 TTTT
1 TTTT
173667 GAAAAGAAAG
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
20 6 0.27
21 15 0.68
22 1 0.05
ACGTcount: A:0.02, C:0.02, G:0.09, T:0.87
Consensus pattern (20 bp):
TTTTTTGTTTATGTTTTTTT
Found at i:175226 original size:33 final size:32
Alignment explanation
Indices: 175184--175248 Score: 94
Period size: 33 Copynumber: 2.0 Consensus size: 32
175174 CACACTCAGA
* *
175184 TGTATCGATACATATTGCTTAGTATTGATACAC
1 TGTATCGATACATATT-CATAGTATCGATACAC
*
175217 TGTATCGATACATGTTCATAGTATCGATACAC
1 TGTATCGATACATATTCATAGTATCGATACAC
175249 GTTGAAAAGT
Statistics
Matches: 29, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
32 14 0.48
33 15 0.52
ACGTcount: A:0.31, C:0.17, G:0.15, T:0.37
Consensus pattern (32 bp):
TGTATCGATACATATTCATAGTATCGATACAC
Found at i:175242 original size:19 final size:20
Alignment explanation
Indices: 175218--175269 Score: 70
Period size: 19 Copynumber: 2.6 Consensus size: 20
175208 TTGATACACT
* *
175218 GTATCGATACATGTT-CATA
1 GTATCGATACATGTTGAAAA
*
175237 GTATCGATACACGTTGAAAA
1 GTATCGATACATGTTGAAAA
175257 GTATCGATACATG
1 GTATCGATACATG
175270 AAACTGGAAG
Statistics
Matches: 28, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
19 14 0.50
20 14 0.50
ACGTcount: A:0.35, C:0.15, G:0.19, T:0.31
Consensus pattern (20 bp):
GTATCGATACATGTTGAAAA
Found at i:176852 original size:19 final size:19
Alignment explanation
Indices: 176828--176865 Score: 76
Period size: 19 Copynumber: 2.0 Consensus size: 19
176818 TGCTAACCTA
176828 TGAAATGAAGATCAAGCAC
1 TGAAATGAAGATCAAGCAC
176847 TGAAATGAAGATCAAGCAC
1 TGAAATGAAGATCAAGCAC
176866 ATACATGTGC
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.47, C:0.16, G:0.21, T:0.16
Consensus pattern (19 bp):
TGAAATGAAGATCAAGCAC
Found at i:177646 original size:8 final size:8
Alignment explanation
Indices: 177590--177650 Score: 55
Period size: 7 Copynumber: 8.4 Consensus size: 8
177580 TCCAACGAGG
177590 TTAAAAAA
1 TTAAAAAA
177598 -TAAAAAA
1 TTAAAAAA
*
177605 ATAAATAAA
1 TTAAA-AAA
177614 TT--AAAA
1 TTAAAAAA
177620 TT--AAAA
1 TTAAAAAA
177626 TT-AAAAA
1 TTAAAAAA
177633 TT-AAAAA
1 TTAAAAAA
177640 TTAAAAAA
1 TTAAAAAA
177648 TTA
1 TTA
177651 GGTGCAATAT
Statistics
Matches: 48, Mismatches: 1, Indels: 8
0.84 0.02 0.14
Matches are distributed among these distances:
6 11 0.23
7 21 0.44
8 12 0.25
9 4 0.08
ACGTcount: A:0.72, C:0.00, G:0.00, T:0.28
Consensus pattern (8 bp):
TTAAAAAA
Found at i:178150 original size:14 final size:14
Alignment explanation
Indices: 178131--178158 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
178121 TTTACCCAGA
178131 TGTATCGATACATT
1 TGTATCGATACATT
178145 TGTATCGATACATT
1 TGTATCGATACATT
178159 CTATTTTTTT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.29, C:0.14, G:0.14, T:0.43
Consensus pattern (14 bp):
TGTATCGATACATT
Found at i:178158 original size:44 final size:45
Alignment explanation
Indices: 178101--178190 Score: 146
Period size: 45 Copynumber: 2.0 Consensus size: 45
178091 GAACAGTACA
*
178101 TGTATCGATACATTCT-GTTTTTTACCCAGATGTATCGATACATT
1 TGTATCGATACATTCTAGTTTTTTACCCAGATATATCGATACATT
* *
178145 TGTATCGATACATTCTATTTTTTTACTCAGATATATCGATACATT
1 TGTATCGATACATTCTAGTTTTTTACCCAGATATATCGATACATT
178190 T
1 T
178191 TTCAATGTAT
Statistics
Matches: 42, Mismatches: 3, Indels: 1
0.91 0.07 0.02
Matches are distributed among these distances:
44 16 0.38
45 26 0.62
ACGTcount: A:0.27, C:0.17, G:0.11, T:0.46
Consensus pattern (45 bp):
TGTATCGATACATTCTAGTTTTTTACCCAGATATATCGATACATT
Found at i:194226 original size:21 final size:22
Alignment explanation
Indices: 194202--194251 Score: 61
Period size: 21 Copynumber: 2.4 Consensus size: 22
194192 ATCAAATCTT
* *
194202 CTTCAAATTTCTT-ATTTTTCA
1 CTTCAAAATACTTCATTTTTCA
194223 CTTCAAAATACTTCATTTTTCA
1 CTTCAAAATACTTCATTTTTCA
194245 --TCAAAAT
1 CTTCAAAAT
194252 CATCAACAAA
Statistics
Matches: 26, Mismatches: 2, Indels: 3
0.84 0.06 0.10
Matches are distributed among these distances:
20 7 0.27
21 11 0.42
22 8 0.31
ACGTcount: A:0.32, C:0.20, G:0.00, T:0.48
Consensus pattern (22 bp):
CTTCAAAATACTTCATTTTTCA
Found at i:196046 original size:21 final size:22
Alignment explanation
Indices: 196000--196044 Score: 67
Period size: 20 Copynumber: 2.1 Consensus size: 22
195990 TTTTTAACCA
*
196000 TTTATCAAGGGGGAGAAATTTT
1 TTTATCAAGAGGGAGAAATTTT
196022 TTTATCAA-AGGGA-AAATTTT
1 TTTATCAAGAGGGAGAAATTTT
196042 TTT
1 TTT
196045 TAACGAGAGC
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
20 10 0.45
21 4 0.18
22 8 0.36
ACGTcount: A:0.33, C:0.04, G:0.20, T:0.42
Consensus pattern (22 bp):
TTTATCAAGAGGGAGAAATTTT
Found at i:196674 original size:20 final size:19
Alignment explanation
Indices: 196630--196684 Score: 74
Period size: 19 Copynumber: 2.8 Consensus size: 19
196620 GTAACGATAT
* **
196630 ATTGTATCGATACACGTTC
1 ATTGTATCGATACATGGAC
196649 ATTGTATCGATACATGGAC
1 ATTGTATCGATACATGGAC
196668 AATTGTATCGATACATG
1 -ATTGTATCGATACATG
196685 AAACTGGCAG
Statistics
Matches: 32, Mismatches: 3, Indels: 1
0.89 0.08 0.03
Matches are distributed among these distances:
19 16 0.50
20 16 0.50
ACGTcount: A:0.31, C:0.16, G:0.18, T:0.35
Consensus pattern (19 bp):
ATTGTATCGATACATGGAC
Found at i:196755 original size:20 final size:20
Alignment explanation
Indices: 196713--196765 Score: 72
Period size: 20 Copynumber: 2.6 Consensus size: 20
196703 CTACCATTGT
*
196713 TTGTATCAATACATGACACA
1 TTGTATCGATACATGACACA
*
196733 TTGTATCGATACATGATGA-A
1 TTGTATCGATACATGA-CACA
196753 TTGTATCGATACA
1 TTGTATCGATACA
196766 ATGCTTCAAA
Statistics
Matches: 30, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
20 29 0.97
21 1 0.03
ACGTcount: A:0.36, C:0.15, G:0.15, T:0.34
Consensus pattern (20 bp):
TTGTATCGATACATGACACA
Found at i:204140 original size:14 final size:14
Alignment explanation
Indices: 204121--204173 Score: 67
Period size: 13 Copynumber: 4.0 Consensus size: 14
204111 TTTAGCTGAG
204121 AAAAAGAGAG-AAA
1 AAAAAGAGAGAAAA
204134 AAAAA-AGAGAAAA
1 AAAAAGAGAGAAAA
* *
204147 AAAAAGAAAGAAAG
1 AAAAAGAGAGAAAA
204161 AAAAAG-GAGAAAA
1 AAAAAGAGAGAAAA
204174 TAGAGGGAGA
Statistics
Matches: 34, Mismatches: 4, Indels: 4
0.81 0.10 0.10
Matches are distributed among these distances:
12 4 0.12
13 18 0.53
14 12 0.35
ACGTcount: A:0.79, C:0.00, G:0.21, T:0.00
Consensus pattern (14 bp):
AAAAAGAGAGAAAA
Found at i:204142 original size:12 final size:12
Alignment explanation
Indices: 204121--204173 Score: 61
Period size: 12 Copynumber: 4.2 Consensus size: 12
204111 TTTAGCTGAG
*
204121 AAAAAGAGAGAA
1 AAAAAAAGAGAA
204133 AAAAAAAGAGAA
1 AAAAAAAGAGAA
204145 AAAAAAAGAAAGAA
1 AAAAAAAG--AGAA
*
204159 AGAAAAAGGAGAA
1 A-AAAAAAGAGAA
204172 AA
1 AA
204174 TAGAGGGAGA
Statistics
Matches: 36, Mismatches: 2, Indels: 6
0.82 0.05 0.14
Matches are distributed among these distances:
12 20 0.56
13 5 0.14
14 5 0.14
15 6 0.17
ACGTcount: A:0.79, C:0.00, G:0.21, T:0.00
Consensus pattern (12 bp):
AAAAAAAGAGAA
Found at i:204158 original size:26 final size:27
Alignment explanation
Indices: 204121--204173 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 27
204111 TTTAGCTGAG
*
204121 AAAAAGAGAGAAA-AAAAAAGAGAAAA
1 AAAAAGAAAGAAAGAAAAAAGAGAAAA
*
204147 AAAAAGAAAGAAAGAAAAAGGAGAAAA
1 AAAAAGAAAGAAAGAAAAAAGAGAAAA
204174 TAGAGGGAGA
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
26 12 0.50
27 12 0.50
ACGTcount: A:0.79, C:0.00, G:0.21, T:0.00
Consensus pattern (27 bp):
AAAAAGAAAGAAAGAAAAAAGAGAAAA
Found at i:204915 original size:28 final size:26
Alignment explanation
Indices: 204862--204924 Score: 65
Period size: 28 Copynumber: 2.3 Consensus size: 26
204852 TTAAAAAGAA
*
204862 AATTATTAAAAGTTTAAGGGTTAAATAGC
1 AATT-TTAAAAGTTTAAGGGTGAAAT--C
*
204891 AATTTTAAAA-TTTTAGTGGTGAAATC
1 AATTTTAAAAGTTTAAG-GGTGAAATC
204917 AATTTTAA
1 AATTTTAA
204925 TCACATTTTT
Statistics
Matches: 31, Mismatches: 2, Indels: 5
0.82 0.05 0.13
Matches are distributed among these distances:
26 9 0.29
27 5 0.16
28 13 0.42
29 4 0.13
ACGTcount: A:0.43, C:0.03, G:0.14, T:0.40
Consensus pattern (26 bp):
AATTTTAAAAGTTTAAGGGTGAAATC
Found at i:206050 original size:134 final size:134
Alignment explanation
Indices: 205810--206074 Score: 408
Period size: 134 Copynumber: 2.0 Consensus size: 134
205800 CATCCTTTTT
* * *
205810 ATGAGTCTTTTTAAGTCCATTAGGGTTGCCAGAATACTTTTAAGTCGAAGGTATACCTTTAAGGG
1 ATGAGTCTTTTTAAGTCCATTAGGGTTGCAAGAATACTTTTAAGTCGAAGGTACACCCTTAAGGG
*
205875 CATTTTGGTAATTTTTTAAAACCAACTCCTAGGTCATCATCGGGTCCGCTTTTATGCCGAAGGTG
66 CATTTTGGTAATTTTTTAAAACCAACTCCTAGGTCATCATCGAGTCCGCTTTTATGCCGAAGGTG
205940 GGTA
131 GGTA
* *
205944 ATGAGTCTTTTTAAGTCCTTTAGGGTTGCTAAG-ATACTTTTACA-TCGAAGGTACACCCTTAGG
1 ATGAGTCTTTTTAAGTCCATTAGGGTTGC-AAGAATACTTTTA-AGTCGAAGGTACACCCTTAAG
* * * *
206007 GGTATTTTGGTAATTTTTTAGAACCAACTCCTAGGTCATCATCGAGTCTGTTTTTATGCCGAAGG
64 GGCATTTTGGTAATTTTTTAAAACCAACTCCTAGGTCATCATCGAGTCCGCTTTTATGCCGAAGG
206072 TGG
129 TGG
206075 CCATTTAGGA
Statistics
Matches: 119, Mismatches: 10, Indels: 4
0.89 0.08 0.03
Matches are distributed among these distances:
134 116 0.97
135 3 0.03
ACGTcount: A:0.25, C:0.17, G:0.22, T:0.36
Consensus pattern (134 bp):
ATGAGTCTTTTTAAGTCCATTAGGGTTGCAAGAATACTTTTAAGTCGAAGGTACACCCTTAAGGG
CATTTTGGTAATTTTTTAAAACCAACTCCTAGGTCATCATCGAGTCCGCTTTTATGCCGAAGGTG
GGTA
Found at i:206177 original size:291 final size:297
Alignment explanation
Indices: 205655--206499 Score: 949
Period size: 291 Copynumber: 2.8 Consensus size: 297
205645 TCATCCCTTT
* *
205655 TATGAGTCTTTTTAAGTCTTTTAGGGTTGCTGAGATACTTTTATGTCGAAGGTATACCGTTA-GG
1 TATGAGTCTTTTTAAGTCTTTTAGGGTTGCTGAGATACTTTTACGTCGAAGGTATACCCTTAGGG
** * * * ** *
205719 GCA-TTTCCTAATTTTCAAAACCAACTCCTAGCTCATCCCCGGGTCTGCTTTTATGCCGAAGGAG
66 GCATTTTGGTAATTTTTAGAACCAACTCCTAGATCATCATCGGGTCTGCTTTTATGCCGAAGGTG
* ** *
205783 GGCATTTAGGATAGGTTCATCCTTTTTATGAGTCTTTTTAAGTCCATTAGGGTTGCCAGAATACT
131 GGCATTTAGGATAGGTTCATCCTTTTTATGAGTCTTTTTAAGTCCTTTAGGGTTGCTGGGATACT
* * * *
205848 TTTAAGTCGAAGGTATACCTTTAAGGGCATTTTGGTAATTTTTTAAAACCAACTCCTAGGTCATC
196 TTTACGTCGAAGGTATACCCTTAAGGGCATTTTGGTAATTTTCTAAAACCAACTCCTAGGTCATA
* *
205913 ATCGGGTCCGCTTTTATGCCGAA-GG-T-G-GG-T-A
261 ATCGGGTCCACATTTATGCCGAAGGGTTAGAGGTTCA
* * * *
205944 -ATGAGTCTTTTTAAGTCCTTTAGGGTTGCTAAGATACTTTTACATCGAAGGTACACCCTTAGGG
1 TATGAGTCTTTTTAAGTCTTTTAGGGTTGCTGAGATACTTTTACGTCGAAGGTATACCCTTAGGG
* * * *
206008 GTATTTTGGTAATTTTTTAGAACCAACTCCTAGGTCATCATCGAGTCTGTTTTTATGCCGAAGGT
66 GCATTTTGGTAA-TTTTTAGAACCAACTCCTAGATCATCATCGGGTCTGCTTTTATGCCGAAGGT
*
206073 GGCCATTTAGGATAGGTTCATCCTTTTTATGAGTCTTTTTAAGTCCTTTAGGGTTGCTGGGATAC
130 GGGCATTTAGGATAGGTTCATCCTTTTTATGAGTCTTTTTAAGTCCTTTAGGGTTGCTGGGATAC
* * * *
206138 TTTTACGTCGAAGGTATACCCTTAAGGGCATTTTGGTAATTTTCTAGAACTAACTTCTAGGTCGT
195 TTTTACGTCGAAGGTATACCCTTAAGGGCATTTTGGTAATTTTCTAAAACCAACTCCTAGGTCAT
206203 AATCGGGTCCACATTTATGCCGAAGCTGGGCATTTAGGATAGGTTCA
260 AATCGGGTCCACATTTATGCCGAA---GGG---TTA-G--AGGTTCA
* ** * * *
206250 TCCCTTTTATGAGTCTTTTTAAGTCTTTTAAGGTCACCGGGTTACTTTTACGTCGAAGGTATACC
1 -------TATGAGTCTTTTTAAGTCTTTTAGGGTTGCTGAGATACTTTTACGTCGAAGGTATACC
* ** * * * *
206315 CTT-GAGGGCATTTTGGTAACTTTCTAGAACCAACTCCTAGATTGTTATCGGGTTTACTTTTATA
59 CTTAG-GGGCATTTTGGTAA-TTTTTAGAACCAACTCCTAGATCATCATCGGGTCTGCTTTTATG
*
206379 CCGAAGGTGGGCATTTAGGATAGGTTCATCCCTTTTTATGAGTCTTTTTAGGTCCTTTAGGGTTG
122 CCGAAGGTGGGCATTTAGGATAGGTTCAT-CCTTTTTATGAGTCTTTTTAAGTCCTTTAGGGTTG
* * * *
206444 -TCGAGATACTTTTACGTCAAAGGTATA-CCTCTAGGGGTATTTTGGTAATTTTCTAA
186 CT-GGGATACTTTTACGTCGAAGGTATACCCT-TAAGGGCATTTTGGTAATTTTCTAA
206500 GATCAATGTC
Statistics
Matches: 465, Mismatches: 61, Indels: 34
0.83 0.11 0.06
Matches are distributed among these distances:
288 55 0.12
289 4 0.01
290 6 0.01
291 183 0.39
295 2 0.00
299 1 0.00
301 1 0.00
304 2 0.00
305 1 0.00
306 1 0.00
313 1 0.00
314 129 0.28
315 79 0.17
ACGTcount: A:0.23, C:0.17, G:0.22, T:0.38
Consensus pattern (297 bp):
TATGAGTCTTTTTAAGTCTTTTAGGGTTGCTGAGATACTTTTACGTCGAAGGTATACCCTTAGGG
GCATTTTGGTAATTTTTAGAACCAACTCCTAGATCATCATCGGGTCTGCTTTTATGCCGAAGGTG
GGCATTTAGGATAGGTTCATCCTTTTTATGAGTCTTTTTAAGTCCTTTAGGGTTGCTGGGATACT
TTTACGTCGAAGGTATACCCTTAAGGGCATTTTGGTAATTTTCTAAAACCAACTCCTAGGTCATA
ATCGGGTCCACATTTATGCCGAAGGGTTAGAGGTTCA
Found at i:206237 original size:157 final size:157
Alignment explanation
Indices: 205944--206498 Score: 736
Period size: 157 Copynumber: 3.5 Consensus size: 157
205934 AAGGTGGGTA
* * * *
205944 ATGAGTCTTTTTAAGTCCTTTAGGGTTGCTAAGATACTTTTACATCGAAGGTACACCCTTAGGGG
1 ATGAGTCTTTTTAAGTCCTTTAGGGTTGCTGAGATACTTTTACGTCGAAGGTATACCCTTAAGGG
* * * * * **
206009 TATTTTGGTAATTTTTTAGAACCAACTCCTAGGTCATCATCGAGTCTGTTTTTATGCCGAAGGTG
66 CATTTTGGTAATTTTCTAGAACCAACTCCTAGGTCGTAATCGGGTCTACTTTTATGCCGAAGGTG
*
206074 GCCATTTAGGATAGGTTCATCCTTTTT
131 GGCATTTAGGATAGGTTCATCCTTTTT
*
206101 ATGAGTCTTTTTAAGTCCTTTAGGGTTGCTGGGATACTTTTACGTCGAAGGTATACCCTTAAGGG
1 ATGAGTCTTTTTAAGTCCTTTAGGGTTGCTGAGATACTTTTACGTCGAAGGTATACCCTTAAGGG
* * * * *
206166 CATTTTGGTAATTTTCTAGAACTAACTTCTAGGTCGTAATCGGGTCCACATTTATGCCGAAGCTG
66 CATTTTGGTAATTTTCTAGAACCAACTCCTAGGTCGTAATCGGGTCTACTTTTATGCCGAAGGTG
*
206231 GGCATTTAGGATAGGTTCATCCCTTTT
131 GGCATTTAGGATAGGTTCATCCTTTTT
* * ** * * * *
206258 ATGAGTCTTTTTAAGTCTTTTAAGGTCACCGGGTTACTTTTACGTCGAAGGTATACCCTTGAGGG
1 ATGAGTCTTTTTAAGTCCTTTAGGGTTGCTGAGATACTTTTACGTCGAAGGTATACCCTTAAGGG
* * * * * *
206323 CATTTTGGTAACTTTCTAGAACCAACTCCTAGATTGTTATCGGGTTTACTTTTATACCGAAGGTG
66 CATTTTGGTAATTTTCTAGAACCAACTCCTAGGTCGTAATCGGGTCTACTTTTATGCCGAAGGTG
206388 GGCATTTAGGATAGGTTCATCCCTTTTT
131 GGCATTTAGGATAGGTTCAT-CCTTTTT
* * *
206416 ATGAGTCTTTTTAGGTCCTTTAGGGTTG-TCGAGATACTTTTACGTCAAAGGTATA-CCTCTAGG
1 ATGAGTCTTTTTAAGTCCTTTAGGGTTGCT-GAGATACTTTTACGTCGAAGGTATACCCT-TAAG
*
206479 GGTATTTTGGTAATTTTCTA
64 GGCATTTTGGTAATTTTCTA
206499 AGATCAATGT
Statistics
Matches: 344, Mismatches: 51, Indels: 5
0.86 0.13 0.01
Matches are distributed among these distances:
157 273 0.79
158 71 0.21
ACGTcount: A:0.22, C:0.17, G:0.22, T:0.39
Consensus pattern (157 bp):
ATGAGTCTTTTTAAGTCCTTTAGGGTTGCTGAGATACTTTTACGTCGAAGGTATACCCTTAAGGG
CATTTTGGTAATTTTCTAGAACCAACTCCTAGGTCGTAATCGGGTCTACTTTTATGCCGAAGGTG
GGCATTTAGGATAGGTTCATCCTTTTT
Found at i:210459 original size:166 final size:163
Alignment explanation
Indices: 210310--210615 Score: 393
Period size: 166 Copynumber: 1.9 Consensus size: 163
210300 TTTGGGGGCA
* *
210310 TTTTCATGGATTTAAAATTTTAAAAATTCATCAAATATTATTATTTAATTT-ATATTAAATTAGT
1 TTTTCATGG-TTTAAAATTTTAAAAATTCATCAAATATTATAATTT-ATTTCAGATTAAATTAGT
* * *
210374 TTCA-AAAAATTAATTCATTTTCATGAGTTTTTGAATTTTTTTCCTTGAAA-TTCTTTTTTTTGA
64 TT-AGAAAAACTAATTCA---TCATGAGTTTTTGAA-TTTTTTCCTTAAAATTTCTTTTTTTCGA
* *
210437 AATACAGAGTTTTCTACTCCGTAAACGTTTTCAAAGTGAT
124 AAAACAGAGTTTTCTACTCCGTAAACGTTTTCAAAGGGAT
* ** * * *
210477 TTTTCTTGGTTTTTAATTTTTAAAATTCATCAAATATTATAATTTATTTCAGGTTAAATTGGTTT
1 TTTTCATGGTTTAAAATTTTAAAAATTCATCAAATATTATAATTTATTTCAGATTAAATTAGTTT
* *
210542 AGAAAAACTAATTCATCTTGAGTTTTTGAATTTTTTCCTTAAAATTTCTTTTTTTCGAAAAACTG
66 AGAAAAACTAATTCATCATGAGTTTTTGAATTTTTTCCTTAAAATTTCTTTTTTTCGAAAAACAG
210607 AGTTTTCTA
131 AGTTTTCTA
210616 TTCCACAAAG
Statistics
Matches: 122, Mismatches: 14, Indels: 10
0.84 0.10 0.07
Matches are distributed among these distances:
162 13 0.11
163 40 0.33
165 5 0.04
166 56 0.46
167 8 0.07
ACGTcount: A:0.32, C:0.09, G:0.09, T:0.50
Consensus pattern (163 bp):
TTTTCATGGTTTAAAATTTTAAAAATTCATCAAATATTATAATTTATTTCAGATTAAATTAGTTT
AGAAAAACTAATTCATCATGAGTTTTTGAATTTTTTCCTTAAAATTTCTTTTTTTCGAAAAACAG
AGTTTTCTACTCCGTAAACGTTTTCAAAGGGAT
Found at i:211251 original size:19 final size:18
Alignment explanation
Indices: 211223--211268 Score: 58
Period size: 18 Copynumber: 2.6 Consensus size: 18
211213 TTTGGCTAGT
*
211223 AAAAAA-AAAGGAGAGAAA
1 AAAAAAGAAAGAAGAG-AA
*
211241 AAAAAAGAAAGAAGAGAG
1 AAAAAAGAAAGAAGAGAA
211259 AAAAAAGAAA
1 AAAAAAGAAA
211269 AACTAGGAAA
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
18 17 0.68
19 8 0.32
ACGTcount: A:0.78, C:0.00, G:0.22, T:0.00
Consensus pattern (18 bp):
AAAAAAGAAAGAAGAGAA
Found at i:213075 original size:156 final size:156
Alignment explanation
Indices: 212864--213286 Score: 449
Period size: 156 Copynumber: 2.7 Consensus size: 156
212854 TATGCCTTAC
* * ** * **
212864 GGGTATTTTCGTAATTTTTTAGAACCAACTTCTAGGTCATCATCGAGTCCACTTTTATGCCGAAG
1 GGGTATTTTCGTAATTTTTTAGAACCAAGTCCTAGGTTGTCACCGA-TCTGCTTTTATGCCGAAG
* *
212929 GTGGGCATTTAGGATAAGCTT-ATCCCATCTCTAATTTTTTTAAGTCTTTTAGGGTTACCGAGAT
65 GTGGGCATTTAGGATAAGCTTCATCCCATCTCTAATCTTTTTAAGTCCTTTAGGGTTACCGAGAT
*
212993 ATTTTCATGTCGAAGGTATACCCACAA
130 ACTTTCATGTCGAAGGTATACCCACAA
* * *
213020 GGGTATTTTCATAATTTTTTAGAACCTAGTCCTAGGTTGTCACCAGATCTGCTTTTATGCCAAAG
1 GGGTATTTTCGTAATTTTTTAGAACCAAGTCCTAGGTTGTCACC-GATCTGCTTTTATGCCGAAG
* * *
213085 TTGAGCATTTAGGAT-AGGTTCATCCCATCTCTAATCTTTTTAAGTCCTTTAGGGTTACCGAGAT
65 GTGGGCATTTAGGATAAGCTTCATCCCATCTCTAATCTTTTTAAGTCCTTTAGGGTTACCGAGAT
* ** * *
213149 GCTTTCATGTCGAAGGTATACTTATAG
130 ACTTTCATGTCGAAGGTATACCCACAA
* * * ** * * * * *
213176 GGGTATTTTTGTAATTTTTAACAGTCGAGTCCTAAGTTGTCACCGGGTATGCTTTTAGGCCGAAG
1 GGGTATTTTCGTAATTTTTTAGAACCAAGTCCTAGGTTGTCACC-GATCTGCTTTTATGCCGAAG
** * ** *
213241 GTGGATATTTAGGAT-AGGTTCATTTCATCTAT-ATCCTTTTTAAGTC
65 GTGGGCATTTAGGATAAGCTTCATCCCATCTCTAAT-CTTTTTAAGTC
213287 TTTCAAGGGT
Statistics
Matches: 223, Mismatches: 41, Indels: 6
0.83 0.15 0.02
Matches are distributed among these distances:
155 6 0.03
156 215 0.96
157 2 0.01
ACGTcount: A:0.24, C:0.17, G:0.20, T:0.39
Consensus pattern (156 bp):
GGGTATTTTCGTAATTTTTTAGAACCAAGTCCTAGGTTGTCACCGATCTGCTTTTATGCCGAAGG
TGGGCATTTAGGATAAGCTTCATCCCATCTCTAATCTTTTTAAGTCCTTTAGGGTTACCGAGATA
CTTTCATGTCGAAGGTATACCCACAA
Found at i:213689 original size:27 final size:27
Alignment explanation
Indices: 213640--213691 Score: 70
Period size: 27 Copynumber: 1.9 Consensus size: 27
213630 TTTCAAAGTG
*
213640 AAAATAAAAAATTTTACGATTTTTTAA
1 AAAATAAAAAATATTACGATTTTTTAA
*
213667 AAAATAAAAACTATT-CGAGTTTTTT
1 AAAATAAAAAATATTACGA-TTTTTT
213692 TGAGATTCTA
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
26 3 0.14
27 19 0.86
ACGTcount: A:0.48, C:0.06, G:0.06, T:0.40
Consensus pattern (27 bp):
AAAATAAAAAATATTACGATTTTTTAA
Found at i:221528 original size:13 final size:13
Alignment explanation
Indices: 221510--221534 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
221500 CAAAGATCAG
221510 TGTATCGATACAA
1 TGTATCGATACAA
221523 TGTATCGATACA
1 TGTATCGATACA
221535 TTTGAGTAAT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.36, C:0.16, G:0.16, T:0.32
Consensus pattern (13 bp):
TGTATCGATACAA
Found at i:222744 original size:49 final size:49
Alignment explanation
Indices: 222535--223244 Score: 928
Period size: 49 Copynumber: 14.7 Consensus size: 49
222525 AAAAGGATGT
*
222535 CAATGTGCTGATTCAAGGCCAGCTACATTGAACTTAAAGATGGAAAAGGTGC
1 CAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGAT-G--AAGGTGC
* *
222587 CAATATGCTGATTCAAGGCCAGCTATATTGGACTT----A--AAGGTGC
1 CAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATGAAGGTGC
* *
222630 CAATGTGCTGATTCAAGGCCAGCTACGTTGGACTTAAAGGTG-AGGTGC
1 CAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATGAAGGTGC
222678 CAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATGAAGGTGC
1 CAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATGAAGGTGC
* *
222727 CAATGTGCTGAGTCAAGGCCAGCTACATTGGACTTAAAGATAAAGGTGC
1 CAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATGAAGGTGC
* * * * *
222776 CAATATGCTGATTTAAGGCCAGCTATATTGGACTTAATGGTGAAGGTGC
1 CAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATGAAGGTGC
* *
222825 CAATGTGCTGAGTCAAGGCCAGCTACATTGGACTTAAAGATAAAGGTGC
1 CAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATGAAGGTGC
* * * * *
222874 CAATATGCTGATTCAAGGCTAGCTATATTGGACTTAATGGTGAAGGTGC
1 CAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATGAAGGTGC
* *
222923 CAATGTGCTGAGTCAAGGCCAGCTACATTGGACTTAAAGATAAAGGTGC
1 CAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATGAAGGTGC
* * * *
222972 CAATATGCTGATTCAAGGCCAGCTATATTGGACTTAATGGTGAAGGTGC
1 CAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATGAAGGTGC
* * *
223021 CAATGTGCTGAGTCAAGGCTAGCTACATTGGACTTAAAGATAAAGGTGC
1 CAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATGAAGGTGC
* * *
223070 CAATATTCTGATTCAAGGCCAGCTATATTGGACTT--A-AT---GGTGC
1 CAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATGAAGGTGC
* * *
223113 CAATGTGCTAAGTCAAGGCCAGCTACATTGGACTTAAAGGTG-AGGTGC
1 CAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATGAAGGTGC
* *
223161 CAATGTGCTGAGTCAAGGCCAGCTACATTGGACTTAAAGGTG-AGGTGC
1 CAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATGAAGGTGC
* * * *
223209 CAATATGCTGATTCAGGGCCAGCTATATTGGGCTTA
1 CAATGTGCTGATTCAAGGCCAGCTACATTGGACTTA
223245 GAAGGGTTGC
Statistics
Matches: 577, Mismatches: 69, Indels: 28
0.86 0.10 0.04
Matches are distributed among these distances:
43 74 0.13
45 1 0.00
46 3 0.01
47 1 0.00
48 130 0.23
49 336 0.58
52 32 0.06
ACGTcount: A:0.30, C:0.18, G:0.27, T:0.26
Consensus pattern (49 bp):
CAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATGAAGGTGC
Found at i:222820 original size:98 final size:98
Alignment explanation
Indices: 222535--223244 Score: 1054
Period size: 98 Copynumber: 7.4 Consensus size: 98
222525 AAAAGGATGT
* *
222535 CAATGTGCTGATTCAAGGCCAGCTACATTGAACTTAAAGATGGAAAAGGTGCCAATATGCTGATT
1 CAATGTGCTGAGTCAAGGCCAGCTACATTGGACTTAAAGAT---AAAGGTGCCAATATGCTGATT
222600 CAAGGCCAGCTATATTGGACTT-A-----AAGGTGC
63 CAAGGCCAGCTATATTGGACTTAATGGTGAAGGTGC
* * * * *
222630 CAATGTGCTGATTCAAGGCCAGCTACGTTGGACTTAAAGGT-GAGGTGCCAATGTGCTGATTCAA
1 CAATGTGCTGAGTCAAGGCCAGCTACATTGGACTTAAAGATAAAGGTGCCAATATGCTGATTCAA
* * *
222694 GGCCAGCTACATTGGACTTAAAGATGAAGGTGC
66 GGCCAGCTATATTGGACTTAATGGTGAAGGTGC
*
222727 CAATGTGCTGAGTCAAGGCCAGCTACATTGGACTTAAAGATAAAGGTGCCAATATGCTGATTTAA
1 CAATGTGCTGAGTCAAGGCCAGCTACATTGGACTTAAAGATAAAGGTGCCAATATGCTGATTCAA
222792 GGCCAGCTATATTGGACTTAATGGTGAAGGTGC
66 GGCCAGCTATATTGGACTTAATGGTGAAGGTGC
222825 CAATGTGCTGAGTCAAGGCCAGCTACATTGGACTTAAAGATAAAGGTGCCAATATGCTGATTCAA
1 CAATGTGCTGAGTCAAGGCCAGCTACATTGGACTTAAAGATAAAGGTGCCAATATGCTGATTCAA
*
222890 GGCTAGCTATATTGGACTTAATGGTGAAGGTGC
66 GGCCAGCTATATTGGACTTAATGGTGAAGGTGC
222923 CAATGTGCTGAGTCAAGGCCAGCTACATTGGACTTAAAGATAAAGGTGCCAATATGCTGATTCAA
1 CAATGTGCTGAGTCAAGGCCAGCTACATTGGACTTAAAGATAAAGGTGCCAATATGCTGATTCAA
222988 GGCCAGCTATATTGGACTTAATGGTGAAGGTGC
66 GGCCAGCTATATTGGACTTAATGGTGAAGGTGC
* *
223021 CAATGTGCTGAGTCAAGGCTAGCTACATTGGACTTAAAGATAAAGGTGCCAATATTCTGATTCAA
1 CAATGTGCTGAGTCAAGGCCAGCTACATTGGACTTAAAGATAAAGGTGCCAATATGCTGATTCAA
223086 GGCCAGCTATATTGGACTTAA---T---GGTGC
66 GGCCAGCTATATTGGACTTAATGGTGAAGGTGC
* * * * *
223113 CAATGTGCTAAGTCAAGGCCAGCTACATTGGACTTAAAGGT-GAGGTGCCAATGTGCTGAGTCAA
1 CAATGTGCTGAGTCAAGGCCAGCTACATTGGACTTAAAGATAAAGGTGCCAATATGCTGATTCAA
* *
223177 GGCCAGCTACATTGGACTTAAAGGTG-AGGTGC
66 GGCCAGCTATATTGGACTTAATGGTGAAGGTGC
* * * * *
223209 CAATATGCTGATTCAGGGCCAGCTATATTGGGCTTA
1 CAATGTGCTGAGTCAAGGCCAGCTACATTGGACTTA
223245 GAAGGGTTGC
Statistics
Matches: 569, Mismatches: 34, Indels: 23
0.91 0.05 0.04
Matches are distributed among these distances:
91 78 0.14
92 44 0.08
94 1 0.00
95 39 0.07
96 35 0.06
97 45 0.08
98 327 0.57
ACGTcount: A:0.30, C:0.18, G:0.27, T:0.26
Consensus pattern (98 bp):
CAATGTGCTGAGTCAAGGCCAGCTACATTGGACTTAAAGATAAAGGTGCCAATATGCTGATTCAA
GGCCAGCTATATTGGACTTAATGGTGAAGGTGC
Found at i:223377 original size:35 final size:34
Alignment explanation
Indices: 223280--224195 Score: 261
Period size: 33 Copynumber: 28.7 Consensus size: 34
223270 GCTTTAGAAG
223280 AAGGTGCCACGGAGTCGTGGACTTAAAAGGAAAA
1 AAGGTGCCACGGAGTCGTGGACTTAAAAGGAAAA
* * * * *
223314 GA-GTGCCACGTAGTTGTGGGCTTTAAAGGAAAA
1 AAGGTGCCACGGAGTCGTGGACTTAAAAGGAAAA
*
223347 AATGGTGCCACGGAGTCATGGACTTAAAAGG----
1 AA-GGTGCCACGGAGTCGTGGACTTAAAAGGAAAA
** * *
223378 -A--TGCCACGGAGTTATGGGCTT-AAACG----
1 AAGGTGCCACGGAGTCGTGGACTTAAAAGGAAAA
*
223404 --GGTGCCACGGAGTTGTGGACTTAGAAA-G-AAA
1 AAGGTGCCACGGAGTCGTGGACTTA-AAAGGAAAA
* *
223435 AAGAGTGCCACGGAGTTGTGGGCTTTAAAAAGG-AAA
1 AAG-GTGCCACGGAGTCGTGGAC-TT-AAAAGGAAAA
* * *
223471 AAGATGCCACGGAGTTGTGGGCTT-------AAA
1 AAGGTGCCACGGAGTCGTGGACTTAAAAGGAAAA
* * *
223498 ATGGTGCCACAGAGTTGTGGACTTAAAAGGAAAA
1 AAGGTGCCACGGAGTCGTGGACTTAAAAGGAAAA
* ** * *
223532 GA-GTGCCACATAGTTGTAGG-CTTTAAAGGAAAA
1 AAGGTGCCACGGAGTCGT-GGACTTAAAAGGAAAA
**
223565 AAGGGTGCCACAAAGTCGTGGACTTAAAA-G----
1 AA-GGTGCCACGGAGTCGTGGACTTAAAAGGAAAA
* * * *
223595 --GGTGCCACAGAGTTGTGGGCTT--TA--AAAA
1 AAGGTGCCACGGAGTCGTGGACTTAAAAGGAAAA
* * * * *
223623 GA-GTGCCACAGAGTTGTGGGCTT----TGAAAA
1 AAGGTGCCACGGAGTCGTGGACTTAAAAGGAAAA
*
223652 GAAGGTGCCACGGAGTCGTGGACTTTAAAAGGGAAA
1 -AAGGTGCCACGGAGTCGTGGAC-TTAAAAGGAAAA
* * *
223688 AAGAGTGCCACGGAGTTGTGGGCTTTGAAAAGGGAAA
1 AAG-GTGCCACGGAGTCGTGGAC-TT-AAAAGGAAAA
* * *
223725 AAGAGTGCCACGGAGTTGTGGGCTTTAAAAAG-AAA
1 AAG-GTGCCACGGAGTCGTGGAC-TTAAAAGGAAAA
* * *
223760 AA-GTGCCACGGAGTGGTGGGCTTTGAGAA-G-AAA
1 AAGGTGCCACGGAGTCGTGGAC-TT-AAAAGGAAAA
* * * *
223793 AAGGTTGCCACGGAATTGTGGGCTT------TAAA
1 AAGG-TGCCACGGAGTCGTGGACTTAAAAGGAAAA
* * *
223822 ATGGTGCCACGGAGTTGTGGACTTAAAAGG-AAC
1 AAGGTGCCACGGAGTCGTGGACTTAAAAGGAAAA
* *
223855 AAGGTGCCACGGAGTTGTGGACTTAAAA-GCAAA
1 AAGGTGCCACGGAGTCGTGGACTTAAAAGGAAAA
* * *
223888 AAGAGTGCCACGGAGTTGTGGGCTTTAAAAAG-AAA
1 AAG-GTGCCACGGAGTCGTGGAC-TTAAAAGGAAAA
* * **
223923 AAGGTGCCACGGAGTTGTGGGCTTTGAA-G--AA
1 AAGGTGCCACGGAGTCGTGGACTTAAAAGGAAAA
* ** *
223954 AAGGATGCCACTGAGTCGTGGACTT-TGA-GACAA
1 AAGG-TGCCACGGAGTCGTGGACTTAAAAGGAAAA
* ** *
223987 AA--TGCCACTGAGTCGTGGACTT-TGA-GACAA
1 AAGGTGCCACGGAGTCGTGGACTTAAAAGGAAAA
* **
224017 AA--TGCCACTGAGTCGTGGACTTTGAA-G--AA
1 AAGGTGCCACGGAGTCGTGGACTTAAAAGGAAAA
* ** *
224046 AAGGATGCCACTGAGTCGTGGACTT-TGA-GAAGA
1 AAGG-TGCCACGGAGTCGTGGACTTAAAAGGAAAA
* * * *
224079 GA-TTGCCACTGAGTCGTGGACTTTAAA-G--AA
1 AAGGTGCCACGGAGTCGTGGACTTAAAAGGAAAA
* ** *
224109 AAGGATGCCACTGAGTCGTGGACTT-TGA-GACAA
1 AAGG-TGCCACGGAGTCGTGGACTTAAAAGGAAAA
* *
224142 AA--TGCCACTGAGTCGTGGACTTTAAA-G--AA
1 AAGGTGCCACGGAGTCGTGGACTTAAAAGGAAAA
*
224171 AAGGATGCCACTGAGTCGTGGACTT
1 AAGG-TGCCACGGAGTCGTGGACTT
224196 TGAGACAAAA
Statistics
Matches: 730, Mismatches: 77, Indels: 152
0.76 0.08 0.16
Matches are distributed among these distances:
25 1 0.00
26 4 0.01
27 78 0.11
28 19 0.03
29 42 0.06
30 74 0.10
31 52 0.07
32 83 0.11
33 131 0.18
34 72 0.10
35 100 0.14
36 38 0.05
37 36 0.05
ACGTcount: A:0.32, C:0.15, G:0.32, T:0.21
Consensus pattern (34 bp):
AAGGTGCCACGGAGTCGTGGACTTAAAAGGAAAA
Found at i:223383 original size:27 final size:27
Alignment explanation
Indices: 223352--223431 Score: 106
Period size: 27 Copynumber: 2.9 Consensus size: 27
223342 GAAAAAATGG
*
223352 TGCCACGGAGTCATGGACTTAAAAGGA
1 TGCCACGGAGTTATGGACTTAAAAGGA
* * *
223379 TGCCACGGAGTTATGGGCTTAAACGGG
1 TGCCACGGAGTTATGGACTTAAAAGGA
*
223406 TGCCACGGAGTTGTGGACTTAGAAAG
1 TGCCACGGAGTTATGGACTTA-AAAG
223432 AAAAAGAGTG
Statistics
Matches: 45, Mismatches: 7, Indels: 1
0.85 0.13 0.02
Matches are distributed among these distances:
27 42 0.93
28 3 0.07
ACGTcount: A:0.28, C:0.17, G:0.34, T:0.21
Consensus pattern (27 bp):
TGCCACGGAGTTATGGACTTAAAAGGA
Found at i:223496 original size:123 final size:125
Alignment explanation
Indices: 223265--223754 Score: 454
Period size: 123 Copynumber: 3.9 Consensus size: 125
223255 CACCGACTTG
* * * *
223265 TGTGGGCTTTAGAAGAAGGTGCCACGGAGTCGTGGAC-TTAAAAGGAAAAGAGTGCCACGTAGTT
1 TGTGGGCTTAAAAAG-AGGTGCCACGGAGTCGTGGACTTTAAAAGAAAAAGAGTGCCACGGAGTT
* ** * *
223329 GTGGGCTTT-AAAGGAAAAAATGGTGCCACGGAGTCATGGAC-TTAAAAGGATGCCACGGAGT
65 GTGGGCTTTAAAAGG-AAAAA-GATGCCACGGAGTTGTGGGCTTTAAAAGGATGCCACAGAGT
* * *
223390 TATGGGCTT-AAACG-GGTGCCACGGAGTTGTGGAC-TTAGAAAGAAAAAGAGTGCCACGGAGTT
1 TGTGGGCTTAAAAAGAGGTGCCACGGAGTCGTGGACTTTA-AAAGAAAAAGAGTGCCACGGAGTT
223452 GTGGGCTTTAAAAAGGAAAAAGATGCCACGGAGTTGTGGGC-TTAAAATGG-TGCCACAGAGT
65 GTGGGCTTT-AAAAGGAAAAAGATGCCACGGAGTTGTGGGCTTTAAAA-GGATGCCACAGAGT
* * ** * * * *
223513 TGTGGACTTAAAAGGAAAAGAGTGCCACATAGTTGTAGG-CTTTAAAGGAAAAAAGGGTGCCACA
1 TGTGGGCTT-AAA--AAGAG-GTGCCACGGAGTCGT-GGACTTTAAAAG-AAAAAGAGTGCCACG
* * * * *
223577 AAGTCGTGGAC-TTAAAAGG-----G-TGCCACAGAGTTGTGGGCTTTAAAAAGAGTGCCACAGA
60 GAGTTGTGGGCTTTAAAAGGAAAAAGATGCCACGGAGTTGTGGGCTTTAAAAGGA-TGCCACAGA
223635 GT
124 GT
*
223637 TGTGGGCTTTGAAAAGAAGGTGCCACGGAGTCGTGGACTTTAAAAGGGAAAAAGAGTGCCACGGA
1 TGTGGGC-TTAAAAAG-AGGTGCCACGGAGTCGTGGACTTTAAAA--GAAAAAGAGTGCCACGGA
223702 GTTGTGGGCTTTGAAAAGGGAAAAAGAGTGCCACGGAGTTGTGGGCTTTAAAA
62 GTTGTGGGCTTT-AAAA-GGAAAAAGA-TGCCACGGAGTTGTGGGCTTTAAAA
223755 AGAAAAAGTG
Statistics
Matches: 296, Mismatches: 38, Indels: 54
0.76 0.10 0.14
Matches are distributed among these distances:
121 2 0.01
122 61 0.21
123 100 0.34
124 32 0.11
125 21 0.07
126 2 0.01
127 1 0.00
128 7 0.02
129 19 0.06
130 26 0.09
131 1 0.00
133 24 0.08
ACGTcount: A:0.32, C:0.13, G:0.33, T:0.21
Consensus pattern (125 bp):
TGTGGGCTTAAAAAGAGGTGCCACGGAGTCGTGGACTTTAAAAGAAAAAGAGTGCCACGGAGTTG
TGGGCTTTAAAAGGAAAAAGATGCCACGGAGTTGTGGGCTTTAAAAGGATGCCACAGAGT
Found at i:223504 original size:96 final size:95
Alignment explanation
Indices: 223372--223978 Score: 450
Period size: 95 Copynumber: 6.3 Consensus size: 95
223362 TCATGGACTT
* * ** *
223372 AAAAGGATGCCACGGAGTTATGGGCTT-AAACGGGTGCCACGGAGTTGTGGACTTAGAAAGAAAA
1 AAAAGG-TGCCACGGAGTTGTGGACTTAAAAAAGGTGCCACGGAGTTGTGGGCTTA-AAAGAAAA
223436 AGAGTGCCACGGAGTTGTGGGCTTTAAAAAGGA
64 AGAGTGCCACGGAGTTGTGGGCTTT-AAAAGGA
* * * * * *
223469 AAAAGATGCCACGGAGTTGTGGGCTT-AAAATGGTGCCACAGAGTTGTGGACTTAAAAGGAAAAG
1 AAAAGGTGCCACGGAGTTGTGGACTTAAAAAAGGTGCCACGGAGTTGTGGGCTTAAAAGAAAAAG
** *
223533 AGTGCCACATAGTTGTAGGCTTT-AAAGGAA
66 AGTGCCACGGAGTTGTGGGCTTTAAAAGG-A
** * * * *
223563 AAAAGGGTGCCACAAAGTCGTGGACTT-AAAAGGGTGCCACAGAGTTGTGGGCTT----TAAAAA
1 AAAA-GGTGCCACGGAGTTGTGGACTTAAAAAAGGTGCCACGGAGTTGTGGGCTTAAAAGAAAAA
*
223623 GAGTGCCACAGAGTTGTGGGCTTTGAAAA-G-
65 GAGTGCCACGGAGTTGTGGGCTTT-AAAAGGA
*
223653 --AAGGTGCCACGGAGTCGTGGACTTTAAAAGGGAAAAAGAGTGCCACGGAGTTGTGGGCTTTGA
1 AAAAGGTGCCACGGAGTTGTGGAC-TT---A---AAAAAG-GTGCCACGGAGTTGTGGGC-TT-A
*
223716 AAAGGGAAAAAGAGTGCCACGGAGTTGTGGGCTTTAAAAAGA
56 AAA--GAAAAAGAGTGCCACGGAGTTGTGGGCTTTAAAAGGA
* * *
223758 AAAA-GTGCCACGGAGTGGTGGGCTTTGAGAAGAAAAAGGTTGCCACGGAATTGTGGGCTT----
1 AAAAGGTGCCACGGAGTTGTGGAC-TT----A-AAAAAGG-TGCCACGGAGTTGTGGGCTTAAAA
* * *
223818 TAAAATG-GTGCCACGGAGTTGTGGAC-TTAAAAGGA
59 GAAAAAGAGTGCCACGGAGTTGTGGGCTTTAAAAGGA
*
223853 ACAAGGTGCCACGGAGTTGTGGACTTAAAAGCAAAAAGAGTGCCACGGAGTTGTGGGCTTTAAAA
1 AAAAGGTGCCACGGAGTTGTGGACTT---A--AAAAAG-GTGCCACGGAGTTGTGGGC-TT-AAA
*
223918 AGAAAAAG-GTGCCACGGAGTTGTGGGCTTT-GAA-G-
58 AGAAAAAGAGTGCCACGGAGTTGTGGGCTTTAAAAGGA
* *
223952 AAAAGGATGCCACTGAGTCGTGGACTT
1 AAAAGG-TGCCACGGAGTTGTGGACTT
223979 TGAGACAAAA
Statistics
Matches: 425, Mismatches: 47, Indels: 73
0.78 0.09 0.13
Matches are distributed among these distances:
87 18 0.04
88 4 0.01
91 26 0.06
92 1 0.00
93 8 0.02
94 8 0.02
95 112 0.26
96 100 0.24
97 12 0.03
99 5 0.01
100 19 0.04
101 25 0.06
102 2 0.00
103 4 0.01
104 32 0.08
105 24 0.06
106 20 0.05
107 5 0.01
ACGTcount: A:0.33, C:0.14, G:0.33, T:0.21
Consensus pattern (95 bp):
AAAAGGTGCCACGGAGTTGTGGACTTAAAAAAGGTGCCACGGAGTTGTGGGCTTAAAAGAAAAAG
AGTGCCACGGAGTTGTGGGCTTTAAAAGGA
Found at i:223601 original size:27 final size:29
Alignment explanation
Indices: 223562--223681 Score: 136
Period size: 29 Copynumber: 4.1 Consensus size: 29
223552 CTTTAAAGGA
*
223562 AAAAAGGGTGCCACAAAGTCGTGGAC-TT
1 AAAAAGGGTGCCACAGAGTCGTGGACTTT
* *
223590 -AAAAGGGTGCCACAGAGTTGTGGGCTTT
1 AAAAAGGGTGCCACAGAGTCGTGGACTTT
* * *
223618 AAAAAGAGTGCCACAGAGTTGTGGGCTTT
1 AAAAAGGGTGCCACAGAGTCGTGGACTTT
* *
223647 GAAAAGAAGGTGCCACGGAGTCGTGGACTTT
1 -AAAA-AGGGTGCCACAGAGTCGTGGACTTT
223678 AAAA
1 AAAA
223682 GGGAAAAAGA
Statistics
Matches: 79, Mismatches: 9, Indels: 6
0.84 0.10 0.06
Matches are distributed among these distances:
27 22 0.28
28 2 0.03
29 27 0.34
30 8 0.10
31 20 0.25
ACGTcount: A:0.33, C:0.15, G:0.32, T:0.21
Consensus pattern (29 bp):
AAAAAGGGTGCCACAGAGTCGTGGACTTT
Found at i:223661 original size:122 final size:122
Alignment explanation
Indices: 223475--223698 Score: 287
Period size: 122 Copynumber: 1.8 Consensus size: 122
223465 AGGAAAAAGA
* *
223475 TGCCACGGAGTTGTGGGCTTAAAATGGTGCCACAGAGTTGTGGACTTAAAAGGAAAAGAGTGCCA
1 TGCCACAGAGTTGTGGGCTTAAAAAGGTGCCACAGAGTTGTGGACTTAAAAGG-AAAGAGTGCCA
* * *
223540 CATAGTTGTAGG-CTTT-AAAGGAAAAAAGGGTGCCACAAAGTCGTGGACTTAAAAGGG
65 CAGAGTCGT-GGACTTTAAAAGGAAAAAAGAGTGCCACAAAGTCGTGGACTTAAAAGGG
*
223597 TGCCACAGAGTTGTGGGCTTTAAAAAGAGTGCCACAGAGTTGTGGGCTTTGAAAA-G-AAG-GTG
1 TGCCACAGAGTTGTGGGC-TTAAAAAG-GTGCCACAGAGTTGTGGAC-TT-AAAAGGAAAGAGTG
* *
223659 CCACGGAGTCGTGGACTTTAAAAGGGAAAAAGAGTGCCAC
62 CCACAGAGTCGTGGACTTTAAAAGGAAAAAAGAGTGCCAC
223699 GGAGTTGTGG
Statistics
Matches: 88, Mismatches: 8, Indels: 11
0.82 0.07 0.10
Matches are distributed among these distances:
121 2 0.02
122 33 0.38
123 28 0.32
124 18 0.20
125 3 0.03
126 4 0.05
ACGTcount: A:0.33, C:0.15, G:0.32, T:0.21
Consensus pattern (122 bp):
TGCCACAGAGTTGTGGGCTTAAAAAGGTGCCACAGAGTTGTGGACTTAAAAGGAAAGAGTGCCAC
AGAGTCGTGGACTTTAAAAGGAAAAAAGAGTGCCACAAAGTCGTGGACTTAAAAGGG
Found at i:223699 original size:218 final size:220
Alignment explanation
Indices: 223265--223978 Score: 775
Period size: 218 Copynumber: 3.2 Consensus size: 220
223255 CACCGACTTG
* *
223265 TGTGGGCTTTAGAAGAAGGTGCCACGGAGTCGTGGACTTAAAAGGAAAAGAGTGCCACGTAGTTG
1 TGTGGGC-TTA-AAAAAGGTGCCACGGAGTTGTGGACTTAAAAGGAAAAGAGTGCCACGTAGTTG
* * * * *
223330 TGGGCTTTAAAGGAAAAAATGGTGCCACGGAGTCATGGACTTAAAAGGATGCCACGGAGTTATGG
64 TGGGCTTTAAAGGAAAAAAGGGTGCCACGAAGTCGTGGACTTAAAAGGGTGCCACGGAGTTGTGG
* *
223395 GC-TT-AAACGGGTGCCACGGAGTTGTGGACTTAGAAAGAAAAAGAGTGCCACGGAGTTGTGGGC
129 GCTTTAAAAAGAGTGCCACGGAGTTGTGGACTTAG-AAGAAAAAGAGTGCCACGGAGTTGTGGGC
223458 TTTAAAAAGGAAAAAGA-TGCCACGGAGT
193 TTT-AAAAGGAAAAAGAGTGCCACGGAGT
* * * *
223486 TGTGGGCTT-AAAATGGTGCCACAGAGTTGTGGACTTAAAAGGAAAAGAGTGCCACATAGTTGTA
1 TGTGGGCTTAAAAAAGGTGCCACGGAGTTGTGGACTTAAAAGGAAAAGAGTGCCACGTAGTTGTG
* *
223550 GGCTTTAAAGGAAAAAAGGGTGCCACAAAGTCGTGGACTTAAAAGGGTGCCACAGAGTTGTGGGC
66 GGCTTTAAAGGAAAAAAGGGTGCCACGAAGTCGTGGACTTAAAAGGGTGCCACGGAGTTGTGGGC
* * * * * *
223615 TTTAAAAAGAGTGCCACAGAGTTGTGGGCTTTGAA-AAGAAG-GTGCCACGGAGTCGTGGACTTT
131 TTTAAAAAGAGTGCCACGGAGTTGTGGACTTAGAAGAAAAAGAGTGCCACGGAGTTGTGGGCTTT
223678 AAAAGGGAAAAAGAGTGCCACGGAGT
196 AAAA-GGAAAAAGAGTGCCACGGAGT
* *
223704 TGTGGGCTTTGAAAAGGGAAAAAGAGTGCCACGGAGTTGTGGGCTTTAAAAAGAAAA-AGTGCCA
1 TGTGGGC-TT----A---AAAAAG-GTGCCACGGAGTTGTGGAC-TTAAAAGGAAAAGAGTGCCA
* * * * * *
223768 CGGAGTGGTGGGCTTTGAGAA-G-AAAAAGGTTGCCACGGAA-TTGTGGGCTTTAAAATGGTGCC
56 CGTAGTTGTGGGCTTT-A-AAGGAAAAAAGGGTGCCAC-GAAGTCGTGGAC-TTAAAAGGGTGCC
* * * *
223830 ACGGAGTTGTGGACTTAAAAGGAACAAGGTGCCACGGAGTTGTGGACTTAAAAGCAAAAAGAGTG
117 ACGGAGTTGTGGGCTTTAAA--AA-GA-GTGCCACGGAGTTGTGGACTTAGAAG-AAAAAGAGTG
*
223895 CCACGGAGTTGTGGGCTTTAAAAAGAAAAAG-GTGCCACGGAGT
177 CCACGGAGTTGTGGGCTTTAAAAGGAAAAAGAGTGCCACGGAGT
* *
223938 TGTGGGCTTTGAAGAAAAGGATGCCACTGAGTCGTGGACTT
1 TGTGGGC-TT-AA-AAAAGG-TGCCACGGAGTTGTGGACTT
223979 TGAGACAAAA
Statistics
Matches: 415, Mismatches: 50, Indels: 49
0.81 0.10 0.10
Matches are distributed among these distances:
216 4 0.01
217 29 0.07
218 130 0.31
219 6 0.01
220 26 0.06
221 7 0.02
227 5 0.01
228 59 0.14
229 64 0.15
230 2 0.00
231 3 0.01
232 1 0.00
233 21 0.05
234 22 0.05
235 12 0.03
236 24 0.06
ACGTcount: A:0.32, C:0.14, G:0.33, T:0.21
Consensus pattern (220 bp):
TGTGGGCTTAAAAAAGGTGCCACGGAGTTGTGGACTTAAAAGGAAAAGAGTGCCACGTAGTTGTG
GGCTTTAAAGGAAAAAAGGGTGCCACGAAGTCGTGGACTTAAAAGGGTGCCACGGAGTTGTGGGC
TTTAAAAAGAGTGCCACGGAGTTGTGGACTTAGAAGAAAAAGAGTGCCACGGAGTTGTGGGCTTT
AAAAGGAAAAAGAGTGCCACGGAGT
Found at i:223891 original size:200 final size:197
Alignment explanation
Indices: 223590--223983 Score: 544
Period size: 200 Copynumber: 2.0 Consensus size: 197
223580 TCGTGGACTT
* * ** *
223590 AAAAGGGTGCCACAGAGTTGTGGGCTTTAAAAAGAGTGCCACAGAGTTGTGGGCTTTGAAAAGAA
1 AAAAGGGTGCCACAGAATTGTGGGCTTTAAAAAGAGTGCCACAGAGTTGTGGACTTAAAAAACAA
*
223655 GGTGCCACGGAGTCGTGGACTTTAAAAGGGAAAAAGAGTGCCACGGAGTTGTGGGCTTTGAAAAG
66 GGTGCCACGGAGTCGTGGACTTTAAAAGGCAAAAAGAGTGCCACGGAGTTGTGGGCTTT-AAAA-
* * *
223720 GGAAAAAGAGTGCCACGGAGTTGTGGGCTTTAAAAAGAAAAAG-TGCCACGGAGTGGTGGGCTTT
129 AGAAAAAG-GTGCCACGGAGTTGTGGGCTTT--AAAGAAAAAGATGCCACGGAGTCGTGGACTTT
223784 GAGAAGA
191 GAGAAGA
* * * *
223791 AAAAGGTTGCCACGGAATTGTGGGCTTTAAAATG-GTGCCACGGAGTTGTGGACTTAAAAGGAAC
1 AAAAGGGTGCCACAGAATTGTGGGCTTTAAAAAGAGTGCCACAGAGTTGTGGACTTAAAA--AAC
*
223855 AAGGTGCCACGGAGTTGTGGAC-TTAAAA-GCAAAAAGAGTGCCACGGAGTTGTGGGCTTTAAAA
64 AAGGTGCCACGGAGTCGTGGACTTTAAAAGGCAAAAAGAGTGCCACGGAGTTGTGGGCTTTAAAA
* * *
223918 AGAAAAAGGTGCCACGGAGTTGTGGGCTTTGAAGAAAAGGATGCCACTGAGTCGTGGACTTTGAG
129 AGAAAAAGGTGCCACGGAGTTGTGGGCTTTAAAGAAAAAGATGCCACGGAGTCGTGGACTTTGAG
223983 A
194 A
223984 CAAAATGCCA
Statistics
Matches: 173, Mismatches: 17, Indels: 11
0.86 0.08 0.05
Matches are distributed among these distances:
195 8 0.05
196 22 0.13
197 22 0.13
198 7 0.04
199 4 0.02
200 51 0.29
201 36 0.21
202 23 0.13
ACGTcount: A:0.32, C:0.13, G:0.34, T:0.21
Consensus pattern (197 bp):
AAAAGGGTGCCACAGAATTGTGGGCTTTAAAAAGAGTGCCACAGAGTTGTGGACTTAAAAAACAA
GGTGCCACGGAGTCGTGGACTTTAAAAGGCAAAAAGAGTGCCACGGAGTTGTGGGCTTTAAAAAG
AAAAAGGTGCCACGGAGTTGTGGGCTTTAAAGAAAAAGATGCCACGGAGTCGTGGACTTTGAGAA
GA
Found at i:224010 original size:62 final size:60
Alignment explanation
Indices: 223921--224383 Score: 592
Period size: 62 Copynumber: 7.5 Consensus size: 60
223911 TTTAAAAAGA
* * * *
223921 AAAAGGTGCCACGGAGTTGTGGGCTTTGAAGAAAAGGATGCCACTGAGTCGTGGACTTTGAG
1 AAAAGATGCCACTGAGTCGTGGACTTTG-AGAAAA-GATGCCACTGAGTCGTGGACTTTGAG
223983 ACAAA-ATGCCACTGAGTCGTGGACTTTGAGACAAA-ATGCCACTGAGTCGTGGACTTTGAAG
1 A-AAAGATGCCACTGAGTCGTGGACTTTGAGA-AAAGATGCCACTGAGTCGTGGACTTTG-AG
* *
224044 AAAAGGATGCCACTGAGTCGTGGACTTTGAGAAGAGATTGCCACTGAGTCGTGGACTTTAAAG
1 AAAA-GATGCCACTGAGTCGTGGACTTTGAGAAAAGA-TGCCACTGAGTCGTGGACTTT-GAG
*
224107 AAAAGGATGCCACTGAGTCGTGGACTTTGAGACAAA-ATGCCACTGAGTCGTGGACTTTAAAG
1 AAAA-GATGCCACTGAGTCGTGGACTTTGAGA-AAAGATGCCACTGAGTCGTGGACTTT-GAG
*
224169 AAAAGGATGCCACTGAGTCGTGGACTTTGAGACAAA-ATGCCACTAAGTCGTGGACTTTGAAG
1 AAAA-GATGCCACTGAGTCGTGGACTTTGAGA-AAAGATGCCACTGAGTCGTGGACTTTG-AG
* * * *
224231 AAAAGGATGTCACTGAGTCGTGGACTTCGAGCAGAGATTGCCACTGAGTCGTGGACTTTGAAG
1 AAAA-GATGCCACTGAGTCGTGGACTTTGAGAAAAGA-TGCCACTGAGTCGTGGACTTTG-AG
*
224294 AAAAGGATGCCACTGAGTCGTGGACTTTGAGAAGAGATTGCCACTGAGTCGTGGACTTTGAG
1 AAAA-GATGCCACTGAGTCGTGGACTTTGAGAAAAGA-TGCCACTGAGTCGTGGACTTTGAG
*
224356 AAGAGATTGCCACTGAGTCGTGGACTTT
1 AAAAGA-TGCCACTGAGTCGTGGACTTT
224384 AAAAAGGTAT
Statistics
Matches: 370, Mismatches: 18, Indels: 26
0.89 0.04 0.06
Matches are distributed among these distances:
60 26 0.07
61 12 0.03
62 190 0.51
63 140 0.38
64 2 0.01
ACGTcount: A:0.29, C:0.17, G:0.30, T:0.24
Consensus pattern (60 bp):
AAAAGATGCCACTGAGTCGTGGACTTTGAGAAAAGATGCCACTGAGTCGTGGACTTTGAG
Found at i:224139 original size:125 final size:123
Alignment explanation
Indices: 223921--224383 Score: 668
Period size: 125 Copynumber: 3.7 Consensus size: 123
223911 TTTAAAAAGA
* * * * *
223921 AAAAGG-TGCCACGGAGTTGTGGGCTTTGAAGAAAAGGA-TGCCACTGAGTCGTGGACTTTGAGA
1 AAAAGGATGCCACTGAGTCGTGGACTTTG-AGAAGA-GATTGCCACTGAGTCGTGGACTTTAAGA
223984 CAAA-ATGCCACTGAGTCGTGGACTTTGAGACAAAATGCCACTGAGTCGTGGACTTTGAAG
64 -AAAGATGCCACTGAGTCGTGGACTTTGAGACAAAATGCCACTGAGTCGTGGACTTTGAAG
224044 AAAAGGATGCCACTGAGTCGTGGACTTTGAGAAGAGATTGCCACTGAGTCGTGGACTTTAAAGAA
1 AAAAGGATGCCACTGAGTCGTGGACTTTGAGAAGAGATTGCCACTGAGTCGTGGACTTT-AAGAA
*
224109 AAGGATGCCACTGAGTCGTGGACTTTGAGACAAAATGCCACTGAGTCGTGGACTTTAAAG
65 AA-GATGCCACTGAGTCGTGGACTTTGAGACAAAATGCCACTGAGTCGTGGACTTTGAAG
* *
224169 AAAAGGATGCCACTGAGTCGTGGACTTTGAGACA-A-AATGCCACTAAGTCGTGGACTTTGAAGA
1 AAAAGGATGCCACTGAGTCGTGGACTTTGAGA-AGAGATTGCCACTGAGTCGTGGACTTT-AAGA
* * *
224232 AAAGGATGTCACTGAGTCGTGGACTTCGAG-CAGAGATTGCCACTGAGTCGTGGACTTTGAAG
64 AAA-GATGCCACTGAGTCGTGGACTTTGAGACA-A-AATGCCACTGAGTCGTGGACTTTGAAG
* *
224294 AAAAGGATGCCACTGAGTCGTGGACTTTGAGAAGAGATTGCCACTGAGTCGTGGACTTTGAGAAG
1 AAAAGGATGCCACTGAGTCGTGGACTTTGAGAAGAGATTGCCACTGAGTCGTGGACTTTAAGAAA
224359 AGATTGCCACTGAGTCGTGGACTTT
66 AGA-TGCCACTGAGTCGTGGACTTT
224384 AAAAAGGTAT
Statistics
Matches: 310, Mismatches: 19, Indels: 20
0.89 0.05 0.06
Matches are distributed among these distances:
122 2 0.01
123 37 0.12
124 79 0.25
125 170 0.55
126 22 0.07
ACGTcount: A:0.29, C:0.17, G:0.30, T:0.24
Consensus pattern (123 bp):
AAAAGGATGCCACTGAGTCGTGGACTTTGAGAAGAGATTGCCACTGAGTCGTGGACTTTAAGAAA
AGATGCCACTGAGTCGTGGACTTTGAGACAAAATGCCACTGAGTCGTGGACTTTGAAG
Found at i:224188 original size:187 final size:184
Alignment explanation
Indices: 223893--224383 Score: 725
Period size: 187 Copynumber: 2.6 Consensus size: 184
223883 GCAAAAAGAG
* * * * * *
223893 TGCCACGGAGTTGTGGGCTTTAAAAAGAAAAAGG-TGCCACGGAGTTGTGGGCTTTGAAGAAAAG
1 TGCCACTGAGTCGTGGACTTT--AAAG-AAAAGGATGCCACTGAGTCGTGGACTTTG-AGAAAA-
223957 GATGCCACTGAGTCGTGGACTTTGAGACAAA-ATGCCACTGAGTCGTGGACTTTGAGACAAAATG
61 -ATGCCACTGAGTCGTGGACTTTGAGA-AAAGATGCCACTGAGTCGTGGACTTTGAGACAAAATG
* *
224021 CCACTGAGTCGTGGACTTTGAAGAAAAGGATGCCACTGAGTCGTGGACTTTGAGAAGAGAT
124 CCACTAAGTCGTGGACTTTGAAGAAAAGGATGCCACTGAGTCGTGGACTTCGAGAAGAGAT
224082 TGCCACTGAGTCGTGGACTTTAAAGAAAAGGATGCCACTGAGTCGTGGACTTTGAGACAAAATGC
1 TGCCACTGAGTCGTGGACTTTAAAGAAAAGGATGCCACTGAGTCGTGGACTTTGAGA-AAAATGC
*
224147 CACTGAGTCGTGGACTTTAAAGAAAAGGATGCCACTGAGTCGTGGACTTTGAGACAAAATGCCAC
65 CACTGAGTCGTGGACTTT-GAGAAAA-GATGCCACTGAGTCGTGGACTTTGAGACAAAATGCCAC
* *
224212 TAAGTCGTGGACTTTGAAGAAAAGGATGTCACTGAGTCGTGGACTTCGAGCAGAGAT
128 TAAGTCGTGGACTTTGAAGAAAAGGATGCCACTGAGTCGTGGACTTCGAGAAGAGAT
* *
224269 TGCCACTGAGTCGTGGACTTTGAAGAAAAGGATGCCACTGAGTCGTGGACTTTGAGAAGAGATTG
1 TGCCACTGAGTCGTGGACTTTAAAGAAAAGGATGCCACTGAGTCGTGGACTTTGAGAA-A-AATG
*
224334 CCACTGAGTCGTGGACTTTGAGAAGAGATTGCCACTGAGTCGTGGACTTT
64 CCACTGAGTCGTGGACTTTGAGAAAAGA-TGCCACTGAGTCGTGGACTTT
224384 AAAAAGGTAT
Statistics
Matches: 279, Mismatches: 15, Indels: 18
0.89 0.05 0.06
Matches are distributed among these distances:
185 25 0.09
186 15 0.05
187 199 0.71
188 22 0.08
189 18 0.06
ACGTcount: A:0.29, C:0.17, G:0.30, T:0.24
Consensus pattern (184 bp):
TGCCACTGAGTCGTGGACTTTAAAGAAAAGGATGCCACTGAGTCGTGGACTTTGAGAAAAATGCC
ACTGAGTCGTGGACTTTGAGAAAAGATGCCACTGAGTCGTGGACTTTGAGACAAAATGCCACTAA
GTCGTGGACTTTGAAGAAAAGGATGCCACTGAGTCGTGGACTTCGAGAAGAGAT
Found at i:225348 original size:15 final size:14
Alignment explanation
Indices: 225330--225368 Score: 51
Period size: 15 Copynumber: 2.7 Consensus size: 14
225320 TTTTTCCTTC
* *
225330 TTTTATTTGTTTTT
1 TTTTTTTTGTTTGT
225344 TTTTTGTTTGTTTGT
1 TTTTT-TTTGTTTGT
225359 TTTTTTTTGT
1 TTTTTTTTGT
225369 GGAAAAGAAC
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
14 9 0.41
15 13 0.59
ACGTcount: A:0.03, C:0.00, G:0.13, T:0.85
Consensus pattern (14 bp):
TTTTTTTTGTTTGT
Found at i:232635 original size:52 final size:52
Alignment explanation
Indices: 232550--232674 Score: 223
Period size: 52 Copynumber: 2.4 Consensus size: 52
232540 ATATGAAAAG
* *
232550 TTGCTTGCATGTATCGATACATTTAATAGTGTATCGATACATCTGGGCAAAT
1 TTGCCTGCATGTATCGATACATTTAATAATGTATCGATACATCTGGGCAAAT
*
232602 TTGCCTGCATGTATCGATACATTTTATAATGTATCGATACATCTGGGCAAAT
1 TTGCCTGCATGTATCGATACATTTAATAATGTATCGATACATCTGGGCAAAT
232654 TTGCCTGCATGTATCGATACA
1 TTGCCTGCATGTATCGATACA
232675 AAGATCAGTG
Statistics
Matches: 70, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
52 70 1.00
ACGTcount: A:0.28, C:0.18, G:0.18, T:0.36
Consensus pattern (52 bp):
TTGCCTGCATGTATCGATACATTTAATAATGTATCGATACATCTGGGCAAAT
Found at i:232701 original size:13 final size:13
Alignment explanation
Indices: 232683--232707 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
232673 CAAAGATCAG
232683 TGTATCAATACAA
1 TGTATCAATACAA
232696 TGTATCAATACA
1 TGTATCAATACA
232708 TTTGAGTAAT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.44, C:0.16, G:0.08, T:0.32
Consensus pattern (13 bp):
TGTATCAATACAA
Found at i:232789 original size:13 final size:13
Alignment explanation
Indices: 232771--232795 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
232761 GAAAAAAATA
232771 TGTATCGATACAT
1 TGTATCGATACAT
232784 TGTATCGATACA
1 TGTATCGATACA
232796 ATATTTTATG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.36
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:242859 original size:20 final size:20
Alignment explanation
Indices: 242834--242887 Score: 76
Period size: 20 Copynumber: 2.7 Consensus size: 20
242824 GTTTGAAGCA
242834 ATGTATCGATACAAT-T-CATC
1 ATGTATCGATACAATGTGC--C
242854 ATGTATCGATACAATGTGCC
1 ATGTATCGATACAATGTGCC
242874 ATGTATCGATACAA
1 ATGTATCGATACAA
242888 ACAGTAGTAG
Statistics
Matches: 32, Mismatches: 0, Indels: 4
0.89 0.00 0.11
Matches are distributed among these distances:
20 30 0.94
21 1 0.03
22 1 0.03
ACGTcount: A:0.35, C:0.19, G:0.15, T:0.31
Consensus pattern (20 bp):
ATGTATCGATACAATGTGCC
Found at i:242960 original size:19 final size:20
Alignment explanation
Indices: 242916--242969 Score: 83
Period size: 19 Copynumber: 2.8 Consensus size: 20
242906 CTACCAGTTT
**
242916 CATGTATCGATACAATTGTC
1 CATGTATCGATACAATTGAA
242936 CATGTATCGATACAA-TGAA
1 CATGTATCGATACAATTGAA
242955 CATGTATCGATACAA
1 CATGTATCGATACAA
242970 AGCATAATGT
Statistics
Matches: 32, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
19 17 0.53
20 15 0.47
ACGTcount: A:0.37, C:0.19, G:0.15, T:0.30
Consensus pattern (20 bp):
CATGTATCGATACAATTGAA
Found at i:244455 original size:79 final size:77
Alignment explanation
Indices: 244313--244607 Score: 268
Period size: 79 Copynumber: 3.7 Consensus size: 77
244303 ATGTTTTGGA
* * * * * * **
244313 GGGTTGGCGTATCCCTTCAAAAGTGATGGGGTTAGAGTATCCCCGATGGTGAAAAA-TCGATATT
1 GGGTTGGAGTATCCCTTGAAAA-TAATGAGGTTAGAGTATCCCC-AAGATGAAAAATTTAATATT
244377 TTAGAAATAAAAATG
64 TT-GAAATAAAAATG
* * *
244392 GGGTTGAAGTATCCCCTTGAAAATAATGGGGTTGGAGTATCCCCAAGATGAAAAATTTAATATTT
1 GGGTTGGAGTAT-CCCTTGAAAATAATGAGGTTAGAGTATCCCCAAGATGAAAAATTTAATATTT
*
244457 TGAAAATAAAAATA
65 TG-AAATAAAAATG
* * ** * * *
244471 GGGTTGGAGTATCCCTTTAGAAATAACGAGGTGGGGGTATCCTCACGATGAAAAATTTAATATTT
1 GGGTTGGAGTATCCCTTGA-AAATAATGAGGTTAGAGTATCCCCAAGATGAAAAATTTAATATTT
244536 TGGAAATAAAAATG
65 T-GAAATAAAAATG
* * * * * * *
244550 AGATTGGAGTATCTCCTCGAAATTGATGAGGTTAGAGTATCCCTTAAGATGACAAATT
1 GGGTTGGAGTATC-CCTTGAAAATAATGAGGTTAGAGTATCCC-CAAGATGAAAAATT
244608 CGATGCTTTT
Statistics
Matches: 176, Mismatches: 33, Indels: 13
0.79 0.15 0.06
Matches are distributed among these distances:
78 16 0.09
79 135 0.77
80 25 0.14
ACGTcount: A:0.36, C:0.12, G:0.24, T:0.29
Consensus pattern (77 bp):
GGGTTGGAGTATCCCTTGAAAATAATGAGGTTAGAGTATCCCCAAGATGAAAAATTTAATATTTT
GAAATAAAAATG
Found at i:246932 original size:41 final size:41
Alignment explanation
Indices: 246887--246986 Score: 121
Period size: 41 Copynumber: 2.4 Consensus size: 41
246877 AAAATTGGTT
246887 GCATGTATCGATACA-TTAAAAAATGTATCGATACATTTTAA
1 GCATGTATCGATACATTTAAAAAATGTATCGATAC-TTTTAA
* ** *
246928 GCATGTATCGATACATTTTAAGCATGTATCGATACTTTTAC
1 GCATGTATCGATACATTTAAAAAATGTATCGATACTTTTAA
** *
246969 TTATGTATCGATATATTT
1 GCATGTATCGATACATTT
246987 CCTTTCCAGA
Statistics
Matches: 51, Mismatches: 7, Indels: 2
0.85 0.12 0.03
Matches are distributed among these distances:
41 35 0.69
42 16 0.31
ACGTcount: A:0.34, C:0.13, G:0.13, T:0.40
Consensus pattern (41 bp):
GCATGTATCGATACATTTAAAAAATGTATCGATACTTTTAA
Found at i:246974 original size:20 final size:21
Alignment explanation
Indices: 246887--246986 Score: 123
Period size: 21 Copynumber: 4.9 Consensus size: 21
246877 AAAATTGGTT
*
246887 GCATGTATCGATACA-TTAAA
1 GCATGTATCGATACATTTTAA
**
246907 AAATGTATCGATACATTTTAA
1 GCATGTATCGATACATTTTAA
246928 GCATGTATCGATACATTTTAA
1 GCATGTATCGATACATTTTAA
*
246949 GCATGTATCGATAC-TTTTAC
1 GCATGTATCGATACATTTTAA
** *
246969 TTATGTATCGATATATTT
1 GCATGTATCGATACATTT
246987 CCTTTCCAGA
Statistics
Matches: 69, Mismatches: 9, Indels: 3
0.85 0.11 0.04
Matches are distributed among these distances:
20 29 0.42
21 40 0.58
ACGTcount: A:0.34, C:0.13, G:0.13, T:0.40
Consensus pattern (21 bp):
GCATGTATCGATACATTTTAA
Found at i:247054 original size:20 final size:20
Alignment explanation
Indices: 247011--247084 Score: 67
Period size: 21 Copynumber: 3.6 Consensus size: 20
247001 AGAGTGGTTT
***
247011 TGTATCGATACATTTCAGGCA
1 TGTATCGATACA-TTCACTTA
247032 TGTATCGATACATTCACTTA
1 TGTATCGATACATTCACTTA
* * *
247052 TGTATCGATATATTTACTATT
1 TGTATCGATACATTCACT-TA
*
247073 TGTATCAATACA
1 TGTATCGATACA
247085 AATTGTAGAA
Statistics
Matches: 44, Mismatches: 8, Indels: 2
0.81 0.15 0.04
Matches are distributed among these distances:
20 21 0.48
21 23 0.52
ACGTcount: A:0.31, C:0.16, G:0.12, T:0.41
Consensus pattern (20 bp):
TGTATCGATACATTCACTTA
Found at i:248506 original size:13 final size:13
Alignment explanation
Indices: 248488--248548 Score: 62
Period size: 13 Copynumber: 5.2 Consensus size: 13
248478 ACCAAGGAAA
248488 TGTATCGATACAT
1 TGTATCGATACAT
*
248501 TGTATCGAGACAT
1 TGTATCGATACAT
248514 TG-ATC--T---T
1 TGTATCGATACAT
248521 TGTATCGATACAT
1 TGTATCGATACAT
*
248534 TGTATCGAGACAT
1 TGTATCGATACAT
248547 TG
1 TG
248549 ATCTTTTTAC
Statistics
Matches: 39, Mismatches: 3, Indels: 12
0.72 0.06 0.22
Matches are distributed among these distances:
7 3 0.08
8 3 0.08
10 1 0.03
12 3 0.08
13 29 0.74
ACGTcount: A:0.28, C:0.15, G:0.20, T:0.38
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:248530 original size:33 final size:33
Alignment explanation
Indices: 248488--248566 Score: 140
Period size: 33 Copynumber: 2.4 Consensus size: 33
248478 ACCAAGGAAA
248488 TGTATCGATACATTGTATCGAGACATTGATCTT
1 TGTATCGATACATTGTATCGAGACATTGATCTT
248521 TGTATCGATACATTGTATCGAGACATTGATCTT
1 TGTATCGATACATTGTATCGAGACATTGATCTT
* *
248554 TTTACCGATACAT
1 TGTATCGATACAT
248567 CTGTGAATTT
Statistics
Matches: 44, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
33 44 1.00
ACGTcount: A:0.28, C:0.16, G:0.16, T:0.39
Consensus pattern (33 bp):
TGTATCGATACATTGTATCGAGACATTGATCTT
Found at i:251295 original size:13 final size:13
Alignment explanation
Indices: 251277--251303 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
251267 CCATCTCTCC
251277 GGGGCGCATATGA
1 GGGGCGCATATGA
251290 GGGGCGCATATGA
1 GGGGCGCATATGA
251303 G
1 G
251304 ATTAAAATTT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.22, C:0.15, G:0.48, T:0.15
Consensus pattern (13 bp):
GGGGCGCATATGA
Found at i:252309 original size:7 final size:8
Alignment explanation
Indices: 252292--252326 Score: 52
Period size: 8 Copynumber: 4.4 Consensus size: 8
252282 AGGAAAAAAG
*
252292 AAAGAAAA
1 AAAGATAA
252300 AAAGATAA
1 AAAGATAA
252308 AAAGATAA
1 AAAGATAA
*
252316 AAAAATAA
1 AAAGATAA
252324 AAA
1 AAA
252327 ACTGAGGCTA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
8 25 1.00
ACGTcount: A:0.83, C:0.00, G:0.09, T:0.09
Consensus pattern (8 bp):
AAAGATAA
Found at i:252596 original size:64 final size:64
Alignment explanation
Indices: 252494--252692 Score: 191
Period size: 64 Copynumber: 3.1 Consensus size: 64
252484 GATTTGACTT
* *** * *
252494 AAAAAAGACCTCAACATCATTTTGTGGCTCGACATATTTATAGGAAAACATGTTCAACTTAAAA
1 AAAAAAGACCTCGACATCATTTCAAGGCTTGACCTATTTATAGGAAAACATGTTCAACTTAAAA
* * ** * * * ** *
252558 AAAAAGGACCTCGATATTGTTTTAAGGCTTGACCTATTTATAGGAAAATAGGTTTGACTAAGAAA
1 AAAAAAGACCTCGACATCATTTCAAGGCTTGACCTATTTATAGGAAAACATGTTCAACTTA-AAA
* * * * *
252623 AAAAAATACCTTGACATCATTTCAAGGCTTAACCTATTTTTAGGAAAACATGCTCAACTTAAAA
1 AAAAAAGACCTCGACATCATTTCAAGGCTTGACCTATTTATAGGAAAACATGTTCAACTTAAAA
*
252687 CAAAAA
1 AAAAAA
252693 TATCTCAGCA
Statistics
Matches: 104, Mismatches: 30, Indels: 2
0.76 0.22 0.01
Matches are distributed among these distances:
64 55 0.53
65 49 0.47
ACGTcount: A:0.42, C:0.16, G:0.14, T:0.29
Consensus pattern (64 bp):
AAAAAAGACCTCGACATCATTTCAAGGCTTGACCTATTTATAGGAAAACATGTTCAACTTAAAA
Found at i:253979 original size:20 final size:19
Alignment explanation
Indices: 253956--254027 Score: 74
Period size: 20 Copynumber: 3.7 Consensus size: 19
253946 CACATCCAGA
*
253956 TGTATCGATACAT-TATACTT
1 TGTATCGATACATGT-T-CAT
253976 TGTATCGATACATGTTCAT
1 TGTATCGATACATGTTCAT
**
253995 TGTATCGATACACATTCAAT
1 TGTATCGATACATGTTC-AT
*
254015 TGTGTCGATACAT
1 TGTATCGATACAT
254028 AAAACTGGCA
Statistics
Matches: 45, Mismatches: 5, Indels: 4
0.83 0.09 0.07
Matches are distributed among these distances:
19 17 0.38
20 27 0.60
21 1 0.02
ACGTcount: A:0.29, C:0.17, G:0.14, T:0.40
Consensus pattern (19 bp):
TGTATCGATACATGTTCAT
Found at i:256045 original size:21 final size:21
Alignment explanation
Indices: 256021--256079 Score: 109
Period size: 21 Copynumber: 2.8 Consensus size: 21
256011 GTAAATTCTT
256021 ATGCCTTTGAAGAATTACAAG
1 ATGCCTTTGAAGAATTACAAG
256042 ATGCCTTTGAAGAATTACAAG
1 ATGCCTTTGAAGAATTACAAG
*
256063 ATGCTTTTGAAGAATTA
1 ATGCCTTTGAAGAATTA
256080 GCATTAGAAT
Statistics
Matches: 37, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
21 37 1.00
ACGTcount: A:0.37, C:0.12, G:0.19, T:0.32
Consensus pattern (21 bp):
ATGCCTTTGAAGAATTACAAG
Found at i:258921 original size:31 final size:32
Alignment explanation
Indices: 258857--258933 Score: 111
Period size: 31 Copynumber: 2.4 Consensus size: 32
258847 ATTTTTACAA
258857 TTTGTATTGATACAATGTATCGATACATAAGT
1 TTTGTATTGATACAATGTATCGATACATAAGT
* *
258889 TTTGTATTGATACAAT-TATTGATATATAAGT
1 TTTGTATTGATACAATGTATCGATACATAAGT
* *
258920 TTCGTATCGATACA
1 TTTGTATTGATACA
258934 TGATTCAATA
Statistics
Matches: 41, Mismatches: 4, Indels: 1
0.89 0.09 0.02
Matches are distributed among these distances:
31 25 0.61
32 16 0.39
ACGTcount: A:0.34, C:0.09, G:0.14, T:0.43
Consensus pattern (32 bp):
TTTGTATTGATACAATGTATCGATACATAAGT
Found at i:258945 original size:31 final size:31
Alignment explanation
Indices: 258860--258946 Score: 77
Period size: 31 Copynumber: 2.8 Consensus size: 31
258850 TTTACAATTT
* ** * *
258860 GTATTGATACAATGTATCGATACATAAGTTTT
1 GTATCGATACAATG-ATTAATATATAAGTTTC
* * *
258892 GTATTGATACAATTATTGATATATAAGTTTC
1 GTATCGATACAATGATTAATATATAAGTTTC
258923 GTATCGATAC-ATGATTCAATATAT
1 GTATCGATACAATGATT-AATATAT
258947 TGATACATTA
Statistics
Matches: 47, Mismatches: 7, Indels: 3
0.82 0.12 0.05
Matches are distributed among these distances:
30 5 0.11
31 29 0.62
32 13 0.28
ACGTcount: A:0.36, C:0.09, G:0.14, T:0.41
Consensus pattern (31 bp):
GTATCGATACAATGATTAATATATAAGTTTC
Found at i:258953 original size:20 final size:20
Alignment explanation
Indices: 258924--258996 Score: 74
Period size: 20 Copynumber: 3.6 Consensus size: 20
258914 ATAAGTTTCG
258924 TATCGATACATGATTCAATA
1 TATCGATACATGATTCAATA
* * **
258944 TATTGATACATTACCCAGATA
1 TATCGATACATGATTCA-ATA
* * *
258965 TATCGATACATTATTAAATG
1 TATCGATACATGATTCAATA
258985 TATCGATACATG
1 TATCGATACATG
258997 CAGGTAAATT
Statistics
Matches: 42, Mismatches: 10, Indels: 2
0.78 0.19 0.04
Matches are distributed among these distances:
20 26 0.62
21 16 0.38
ACGTcount: A:0.38, C:0.15, G:0.11, T:0.36
Consensus pattern (20 bp):
TATCGATACATGATTCAATA
Found at i:261934 original size:13 final size:13
Alignment explanation
Indices: 261916--261940 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
261906 ATAATGCACA
261916 GTATCGATACATT
1 GTATCGATACATT
261929 GTATCGATACAT
1 GTATCGATACAT
261941 GACCAAATGT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.36
Consensus pattern (13 bp):
GTATCGATACATT
Found at i:261953 original size:20 final size:21
Alignment explanation
Indices: 261928--261980 Score: 65
Period size: 20 Copynumber: 2.6 Consensus size: 21
261918 ATCGATACAT
*
261928 TGTATCGATACATG-ACCA-AA
1 TGTATCGATACATGTA-AAGAA
*
261948 TGTATCGATACTTGTAAAGAA
1 TGTATCGATACATGTAAAGAA
261969 TGTATCGATACA
1 TGTATCGATACA
261981 AGTGATTGGC
Statistics
Matches: 28, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
20 14 0.50
21 14 0.50
ACGTcount: A:0.38, C:0.15, G:0.17, T:0.30
Consensus pattern (21 bp):
TGTATCGATACATGTAAAGAA
Found at i:262059 original size:13 final size:13
Alignment explanation
Indices: 262041--262066 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
262031 ACACACAATA
262041 TGTATCGATACAT
1 TGTATCGATACAT
262054 TGTATCGATACAT
1 TGTATCGATACAT
262067 CCCAAAATGT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.15, G:0.15, T:0.38
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:262082 original size:33 final size:32
Alignment explanation
Indices: 262021--262088 Score: 109
Period size: 33 Copynumber: 2.1 Consensus size: 32
262011 CCTTAACTGT
*
262021 TTGTATCGATACACACAATATGTATCGATACA
1 TTGTATCGATACACACAAAATGTATCGATACA
*
262053 TTGTATCGATACATCCCAAAATGTATCGATACA
1 TTGTATCGATACA-CACAAAATGTATCGATACA
262086 TTG
1 TTG
262089 GCTTGTAACG
Statistics
Matches: 33, Mismatches: 2, Indels: 1
0.92 0.06 0.03
Matches are distributed among these distances:
32 13 0.39
33 20 0.61
ACGTcount: A:0.35, C:0.19, G:0.13, T:0.32
Consensus pattern (32 bp):
TTGTATCGATACACACAAAATGTATCGATACA
Found at i:268013 original size:8 final size:8
Alignment explanation
Indices: 268000--268025 Score: 52
Period size: 8 Copynumber: 3.2 Consensus size: 8
267990 ATTTGATTAA
268000 ATTTTGTG
1 ATTTTGTG
268008 ATTTTGTG
1 ATTTTGTG
268016 ATTTTGTG
1 ATTTTGTG
268024 AT
1 AT
268026 GTTTTGAGTT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 18 1.00
ACGTcount: A:0.15, C:0.00, G:0.23, T:0.62
Consensus pattern (8 bp):
ATTTTGTG
Found at i:268708 original size:21 final size:21
Alignment explanation
Indices: 268671--268715 Score: 56
Period size: 20 Copynumber: 2.1 Consensus size: 21
268661 GCAGCACTCA
*
268671 CCAGGTCGCGACCGGCA-CCC
1 CCAGGTCGCAACCGGCAGCCC
*
268691 CCAGGTCGCAATCGGGCAGCCC
1 CCAGGTCGCAA-CCGGCAGCCC
268713 CCA
1 CCA
268716 CACTTACAGC
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
20 10 0.48
21 5 0.24
22 6 0.29
ACGTcount: A:0.18, C:0.47, G:0.29, T:0.07
Consensus pattern (21 bp):
CCAGGTCGCAACCGGCAGCCC
Found at i:270191 original size:37 final size:39
Alignment explanation
Indices: 270103--270193 Score: 120
Period size: 37 Copynumber: 2.5 Consensus size: 39
270093 AAATTGCTTT
**
270103 ATTAAGGGGGAGA-AATTTTTTTTGAGAAATTCTTTGAG
1 ATTAAGGGGGAGAGAAAATTTTTTGAGAAATTCTTTGAG
*
270141 ATT-AGGGGG-GAGAAAATTTTTTGAGAAATT-TTT-TG
1 ATTAAGGGGGAGAGAAAATTTTTTGAGAAATTCTTTGAG
270176 ATTAAGGGGGAGAGAAAA
1 ATTAAGGGGGAGAGAAAA
270194 GGAAAATGAA
Statistics
Matches: 47, Mismatches: 3, Indels: 7
0.82 0.05 0.12
Matches are distributed among these distances:
35 4 0.09
36 11 0.23
37 29 0.62
38 3 0.06
ACGTcount: A:0.35, C:0.01, G:0.30, T:0.34
Consensus pattern (39 bp):
ATTAAGGGGGAGAGAAAATTTTTTGAGAAATTCTTTGAG
Found at i:270761 original size:13 final size:13
Alignment explanation
Indices: 270743--270767 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
270733 ATAATGCACA
270743 GTATCGATACATC
1 GTATCGATACATC
270756 GTATCGATACAT
1 GTATCGATACAT
270768 GACCAAATGT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.20, G:0.16, T:0.32
Consensus pattern (13 bp):
GTATCGATACATC
Found at i:270781 original size:20 final size:21
Alignment explanation
Indices: 270756--270807 Score: 63
Period size: 21 Copynumber: 2.5 Consensus size: 21
270746 TCGATACATC
*
270756 GTATCGATACATG-ACCA-AAT
1 GTATCGATACATGTA-AAGAAT
*
270776 GTATCGATACTTGTAAAGAAT
1 GTATCGATACATGTAAAGAAT
270797 GTATCGATACA
1 GTATCGATACA
270808 GGTGATTGGC
Statistics
Matches: 27, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
20 13 0.48
21 14 0.52
ACGTcount: A:0.38, C:0.15, G:0.17, T:0.29
Consensus pattern (21 bp):
GTATCGATACATGTAAAGAAT
Found at i:270875 original size:13 final size:13
Alignment explanation
Indices: 270857--270882 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
270847 AGACACAATA
270857 TGTATCGATACAT
1 TGTATCGATACAT
270870 TGTATCGATACAT
1 TGTATCGATACAT
270883 CCCAAAATGT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.15, G:0.15, T:0.38
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:271984 original size:131 final size:131
Alignment explanation
Indices: 271750--272011 Score: 515
Period size: 131 Copynumber: 2.0 Consensus size: 131
271740 TATGTTTCTC
271750 ATCTCTTAGGGGCGCATATGGGATTAAAATTTTTATCAAAACCTGGATTTATTTTTATACAAAAT
1 ATCTCTTAGGGGCGCATATGGGATTAAAATTTTTATCAAAACCTGGATTTATTTTTATACAAAAT
271815 TCATACATTTAAAGGGGATTATATCGAAATAATGATAAACCGAAACCAAAGAAACCAATATTGAG
66 TCATACATTTAAAGGGGATTATATCGAAATAATGATAAACCGAAACCAAAGAAACCAATATTGAG
271880 T
131 T
*
271881 ATCTCTTAGGGGTGCATATGGGATTAAAATTTTTATCAAAACCTGGATTTATTTTTATACAAAAT
1 ATCTCTTAGGGGCGCATATGGGATTAAAATTTTTATCAAAACCTGGATTTATTTTTATACAAAAT
271946 TCATACATTTAAAGGGGATTATATCGAAATAATGATAAACCGAAACCAAAGAAACCAATATTGAG
66 TCATACATTTAAAGGGGATTATATCGAAATAATGATAAACCGAAACCAAAGAAACCAATATTGAG
272011 T
131 T
272012 CAAAACATAT
Statistics
Matches: 130, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
131 130 1.00
ACGTcount: A:0.40, C:0.13, G:0.15, T:0.32
Consensus pattern (131 bp):
ATCTCTTAGGGGCGCATATGGGATTAAAATTTTTATCAAAACCTGGATTTATTTTTATACAAAAT
TCATACATTTAAAGGGGATTATATCGAAATAATGATAAACCGAAACCAAAGAAACCAATATTGAG
T
Found at i:282828 original size:51 final size:51
Alignment explanation
Indices: 282751--282869 Score: 166
Period size: 51 Copynumber: 2.3 Consensus size: 51
282741 TGAAAACAAT
*
282751 AGGGTTGGAGTATCCCCAATTATGAGAAATCAATATTTTAGAAATAAGGCC
1 AGGGTTGGAGTATCCCCAATTATGAGAAATCAATATTTTAGAAATAAAGCC
* ** * * *
282802 AGGGTTGAAGTATCCCTGATTGTGAGAAATCAATATTTTGGAAATAAAGCT
1 AGGGTTGGAGTATCCCCAATTATGAGAAATCAATATTTTAGAAATAAAGCC
*
282853 GGGGTTGGAGTATCCCC
1 AGGGTTGGAGTATCCCC
282870 TTGGAAAAAA
Statistics
Matches: 58, Mismatches: 10, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
51 58 1.00
ACGTcount: A:0.33, C:0.13, G:0.25, T:0.29
Consensus pattern (51 bp):
AGGGTTGGAGTATCCCCAATTATGAGAAATCAATATTTTAGAAATAAAGCC
Found at i:282847 original size:130 final size:130
Alignment explanation
Indices: 282597--282896 Score: 303
Period size: 130 Copynumber: 2.3 Consensus size: 130
282587 AATAACTGGG
* * * * * *
282597 TTGGAGTATCTCC-TCGAAAATAACGGGGTTGGAGTATCCCCGATTGTGAAAAATCGATGATTTT
1 TTGGAGTATCCCCGTGGAAAA-AACTGGGTTGGAGTATCCCCAATTATGAAAAATCAATGATTTT
* * *
282661 GAAATAAGGCAAGGGTTGAAGTGTCTCCGATTATAGAAAATAGATGTTTCAAAAATAAA-ATCGA
65 GAAATAAGGCAAGGGTTGAAGTATCTCCGATTATAGAAAATAGATATTTCAAAAATAAAGCT-GA
282725 GA
129 GA
*
282727 TTGGAGTATCCCCGT-GAAAACAA-TAGGGTTGGAGTATCCCCAATTATGAGAAATCAAT-ATTT
1 TTGGAGTATCCCCGTGGAAAA-AACT-GGGTTGGAGTATCCCCAATTATGAAAAATCAATGATTT
* * ***
282789 TAGAAATAAGGCCAGGGTTGAAGTATC-CCTGATTGT-GAGAAATCA-ATATTTTGGAAATAAAG
64 T-GAAATAAGGCAAGGGTTGAAGTATCTCC-GATTATAGA-AAAT-AGATATTTCAAAAATAAAG
* *
282851 CTGGGG
125 CTGAGA
*
282857 TTGGAGTATCCCCTTGGAAAAAACT-GGTTGGAGTATCCCC
1 TTGGAGTATCCCCGTGGAAAAAACTGGGTTGGAGTATCCCC
282897 GATGAAATAA
Statistics
Matches: 143, Mismatches: 18, Indels: 19
0.79 0.10 0.11
Matches are distributed among these distances:
129 24 0.17
130 110 0.77
131 9 0.06
ACGTcount: A:0.34, C:0.14, G:0.24, T:0.28
Consensus pattern (130 bp):
TTGGAGTATCCCCGTGGAAAAAACTGGGTTGGAGTATCCCCAATTATGAAAAATCAATGATTTTG
AAATAAGGCAAGGGTTGAAGTATCTCCGATTATAGAAAATAGATATTTCAAAAATAAAGCTGAGA
Found at i:282922 original size:28 final size:29
Alignment explanation
Indices: 282853--282936 Score: 102
Period size: 27 Copynumber: 2.9 Consensus size: 29
282843 AAATAAAGCT
*
282853 GGGGTTGGAGTATCCCC-TTGGAAAAAAC
1 GGGGTTGGAGTATCCCCGATGGAAAAAAC
* *
282881 -TGGTTGGAGTATCCCCGAT-GAAATAAC
1 GGGGTTGGAGTATCCCCGATGGAAAAAAC
282908 GGGGTTGGAGTATCCCCGATTGTGAAAAA
1 GGGGTTGGAGTATCCCCGA-TG-GAAAAA
282937 TTAGTGTTTT
Statistics
Matches: 46, Mismatches: 5, Indels: 7
0.79 0.09 0.12
Matches are distributed among these distances:
27 22 0.48
28 18 0.39
29 1 0.02
31 5 0.11
ACGTcount: A:0.29, C:0.17, G:0.31, T:0.24
Consensus pattern (29 bp):
GGGGTTGGAGTATCCCCGATGGAAAAAAC
Found at i:282995 original size:51 final size:51
Alignment explanation
Indices: 282911--283026 Score: 142
Period size: 51 Copynumber: 2.3 Consensus size: 51
282901 AAATAACGGG
* * * *
282911 GTTGGAGTATCCCCGATTGTGAAAAATTAGTGTTTTGGAAATAAAATCAGA
1 GTTGGAGTATCCCCGACTATGAAAAATTAGTGTTTTAGAAATAAAACCAGA
* * * * * *
282962 GTTGGAATATCCCCGACTATGGAGAATTGGTGTTTTAGAAATAAAACCGGG
1 GTTGGAGTATCCCCGACTATGAAAAATTAGTGTTTTAGAAATAAAACCAGA
283013 GTTGGAGTATCCCC
1 GTTGGAGTATCCCC
283027 TCGAAAGTAA
Statistics
Matches: 54, Mismatches: 11, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
51 54 1.00
ACGTcount: A:0.31, C:0.14, G:0.26, T:0.29
Consensus pattern (51 bp):
GTTGGAGTATCCCCGACTATGAAAAATTAGTGTTTTAGAAATAAAACCAGA
Found at i:283096 original size:79 final size:79
Alignment explanation
Indices: 282962--283111 Score: 228
Period size: 79 Copynumber: 1.9 Consensus size: 79
282952 TAAAATCAGA
* * ** * *
282962 GTTGGAATATCCCCGACTATGGAGAATTGGTGTTTTAGAAATAAAACCGGGGTTGGAGTATCCCC
1 GTTGGAATATCCCCGACTATGAAAAATTAATGTTTTAAAAATAAAACCGGAGTTGGAGTATCCCC
283027 TCGAAAGTAACGGG
66 TCGAAAGTAACGGG
* *
283041 GTTGGAGTATCCCCGATTATGAAAAATTAATGTTTTAAAAATAAAACCGGAGTTGGAGTATCCCC
1 GTTGGAATATCCCCGACTATGAAAAATTAATGTTTTAAAAATAAAACCGGAGTTGGAGTATCCCC
283106 TCGAAA
66 TCGAAA
283112 AATCTAGAAA
Statistics
Matches: 63, Mismatches: 8, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
79 63 1.00
ACGTcount: A:0.33, C:0.16, G:0.25, T:0.27
Consensus pattern (79 bp):
GTTGGAATATCCCCGACTATGAAAAATTAATGTTTTAAAAATAAAACCGGAGTTGGAGTATCCCC
TCGAAAGTAACGGG
Found at i:283134 original size:130 final size:128
Alignment explanation
Indices: 282882--283134 Score: 278
Period size: 130 Copynumber: 1.9 Consensus size: 128
282872 GGAAAAAACT
* *
282882 GGTTGGAGTATCCCCGATGAAATAACGGGGTTGGAGTATCCCCGATTGTGAAAAATTAGTGTTTT
1 GGTTGGAGTATCCCC-ATGAAATAACGGGGTTGGAGTATCCCCGATTATGAAAAATTAATGTTTT
** * ** * * *** *
282947 GGAAATAAAATCAGAGTTGGAATATCCCCGACTATGGAGAATTGGTGTTTTAGAAATAAAACCGG
65 AAAAATAAAACCAGAGTTGGAATATCCCCGAAAATCGAGAAAT-GTGTAACAAAAATAAAACCGG
283012 GGTTGGAGTATCCCC-TCGAAAGTAACGGGGTTGGAGTATCCCCGATTATGAAAAATTAATGTTT
1 GGTTGGAGTATCCCCAT-GAAA-TAACGGGGTTGGAGTATCCCCGATTATGAAAAATTAATGTTT
* * *
283076 TAAAAATAAAACCGGAGTTGGAGTATCCCCTCGAAAAATCTAGAAAT-T-TAACAAAAATA
64 TAAAAATAAAACCAGAGTTGGAATAT-CCC-CG-AAAATCGAGAAATGTGTAACAAAAATA
283135 CTTTTAGGTT
Statistics
Matches: 102, Mismatches: 16, Indels: 10
0.80 0.12 0.08
Matches are distributed among these distances:
128 1 0.01
129 4 0.04
130 83 0.81
131 4 0.04
132 2 0.02
133 8 0.08
ACGTcount: A:0.35, C:0.14, G:0.24, T:0.27
Consensus pattern (128 bp):
GGTTGGAGTATCCCCATGAAATAACGGGGTTGGAGTATCCCCGATTATGAAAAATTAATGTTTTA
AAAATAAAACCAGAGTTGGAATATCCCCGAAAATCGAGAAATGTGTAACAAAAATAAAACCGG
Found at i:285575 original size:19 final size:21
Alignment explanation
Indices: 285551--285602 Score: 81
Period size: 21 Copynumber: 2.6 Consensus size: 21
285541 AGCGATACAC
285551 TGTATCGATACA-TTACT-TA
1 TGTATCGATACATTTACTATA
*
285570 TGTATCGATACATTTACTATT
1 TGTATCGATACATTTACTATA
285591 TGTATCGATACA
1 TGTATCGATACA
285603 AATTATTGAA
Statistics
Matches: 30, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
19 12 0.40
20 5 0.17
21 13 0.43
ACGTcount: A:0.31, C:0.15, G:0.12, T:0.42
Consensus pattern (21 bp):
TGTATCGATACATTTACTATA
Found at i:286532 original size:61 final size:58
Alignment explanation
Indices: 286444--287041 Score: 688
Period size: 61 Copynumber: 10.3 Consensus size: 58
286434 ATAAAGTGCA
* * * *
286444 TCCTACTCTTTAAGGACT-AAAAAGTGCCACCAACTCGTGTGGGCTTTGAAAAGGAATGGCG
1 TCCTGCTCTTTGAGGACTGGAAAA-TGCCACCAACTTGTGTGGGCTTTG-AAA-GAA-GGCG
* ** * *
286505 TCATGCTCTTTGAGGACTGGAAGGTGCCACCAACTTGTGTGGGCTTTGCAAAAAGAAAGCA
1 TCCTGCTCTTTGAGGACTGGAAAATGCCACCAACTTGTGTGGGCTTTG---AAAGAAGGCG
*
286566 TCCTGCTCTTTAAGGACTGGAAAATGCCACCAACTTGTGTGGGCTTTG--A-AAGGCG
1 TCCTGCTCTTTGAGGACTGGAAAATGCCACCAACTTGTGTGGGCTTTGAAAGAAGGCG
* ** *
286621 TCCTGCTCTTTAAGGACTGGAAAATGCCACCAACTTGCATGGGCTTT--AAG-AGGCA
1 TCCTGCTCTTTGAGGACTGGAAAATGCCACCAACTTGTGTGGGCTTTGAAAGAAGGCG
*
286676 TCCTGCTCTTTGAGGACTGGAAGATGCCACCAACTTGTGTGGGCTTT--AAG-AGGCG
1 TCCTGCTCTTTGAGGACTGGAAAATGCCACCAACTTGTGTGGGCTTTGAAAGAAGGCG
* *
286731 TCCTGCTCTTTGAGGACTGGAAAATGCCACCAACTTGTGTGGGCTTTGAAAAGAGAAAGCA
1 TCCTGCTCTTTGAGGACTGGAAAATGCCACCAACTTGTGTGGGCTTTG--AA-AGAAGGCG
286792 TCCTGCTCTTTGAGGACTGGAAAATGCCACCAACTTGTGTGGGCTTTG--A-AAGGCG
1 TCCTGCTCTTTGAGGACTGGAAAATGCCACCAACTTGTGTGGGCTTTGAAAGAAGGCG
*
286847 TCCTGCTCTTTGAGGACTGGAAAATGCCACCAACTTGTGTGAGCTTTGAAAGGAAAAGGCG
1 TCCTGCTCTTTGAGGACTGGAAAATGCCACCAACTTGTGTGGGCTTTGAAA-G--AAGGCG
* * *
286908 TCTTGCTCTTTGAGGACTGGGAAGTGCCACCAACTTGTGTGGGCTTTGAAAGGAAAAGGCG
1 TCCTGCTCTTTGAGGACTGGAAAATGCCACCAACTTGTGTGGGCTTTGAAA-G--AAGGCG
* *** * **
286969 TCCTGCTCTTTGAGGACTAGAGGGTGCCACTAACTCATGTGGGCTTTG--A-AAGGCG
1 TCCTGCTCTTTGAGGACTGGAAAATGCCACCAACTTGTGTGGGCTTTGAAAGAAGGCG
287024 TCCTGCTCTTTGAGGACT
1 TCCTGCTCTTTGAGGACT
287042 AAAGGGCGAA
Statistics
Matches: 479, Mismatches: 41, Indels: 40
0.86 0.07 0.07
Matches are distributed among these distances:
55 225 0.47
56 2 0.00
57 1 0.00
59 2 0.00
60 2 0.00
61 238 0.50
62 5 0.01
63 4 0.01
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (58 bp):
TCCTGCTCTTTGAGGACTGGAAAATGCCACCAACTTGTGTGGGCTTTGAAAGAAGGCG
Found at i:286642 original size:55 final size:55
Alignment explanation
Indices: 286566--287041 Score: 596
Period size: 55 Copynumber: 8.3 Consensus size: 55
286556 AAAGAAAGCA
*
286566 TCCTGCTCTTTAAGGACTGGAAAATGCCACCAACTTGTGTGGGCTTTGAAAGGCG
1 TCCTGCTCTTTGAGGACTGGAAAATGCCACCAACTTGTGTGGGCTTTGAAAGGCG
* ** *
286621 TCCTGCTCTTTAAGGACTGGAAAATGCCACCAACTTGCATGGGCTTT-AAGAGGCA
1 TCCTGCTCTTTGAGGACTGGAAAATGCCACCAACTTGTGTGGGCTTTGAA-AGGCG
*
286676 TCCTGCTCTTTGAGGACTGGAAGATGCCACCAACTTGTGTGGGCTTT-AAGAGGCG
1 TCCTGCTCTTTGAGGACTGGAAAATGCCACCAACTTGTGTGGGCTTTGAA-AGGCG
*
286731 TCCTGCTCTTTGAGGACTGGAAAATGCCACCAACTTGTGTGGGCTTTGAAAAGAGAAAGCA
1 TCCTGCTCTTTGAGGACTGGAAAATGCCACCAACTTGTGTGGGCTTTG--AA-AG---GCG
286792 TCCTGCTCTTTGAGGACTGGAAAATGCCACCAACTTGTGTGGGCTTTGAAAGGCG
1 TCCTGCTCTTTGAGGACTGGAAAATGCCACCAACTTGTGTGGGCTTTGAAAGGCG
*
286847 TCCTGCTCTTTGAGGACTGGAAAATGCCACCAACTTGTGTGAGCTTTGAAAGGAAAAGGCG
1 TCCTGCTCTTTGAGGACTGGAAAATGCCACCAACTTGTGTGGGCTTT-----G-AAAGGCG
* * *
286908 TCTTGCTCTTTGAGGACTGGGAAGTGCCACCAACTTGTGTGGGCTTTGAAAGGAAAAGGCG
1 TCCTGCTCTTTGAGGACTGGAAAATGCCACCAACTTGTGTGGGCTTT-----G-AAAGGCG
* *** * **
286969 TCCTGCTCTTTGAGGACTAGAGGGTGCCACTAACTCATGTGGGCTTTGAAAGGCG
1 TCCTGCTCTTTGAGGACTGGAAAATGCCACCAACTTGTGTGGGCTTTGAAAGGCG
287024 TCCTGCTCTTTGAGGACT
1 TCCTGCTCTTTGAGGACT
287042 AAAGGGCGAA
Statistics
Matches: 384, Mismatches: 24, Indels: 26
0.88 0.06 0.06
Matches are distributed among these distances:
54 2 0.01
55 218 0.57
56 1 0.00
58 7 0.02
59 2 0.01
60 1 0.00
61 153 0.40
ACGTcount: A:0.24, C:0.21, G:0.28, T:0.27
Consensus pattern (55 bp):
TCCTGCTCTTTGAGGACTGGAAAATGCCACCAACTTGTGTGGGCTTTGAAAGGCG
Found at i:286838 original size:116 final size:117
Alignment explanation
Indices: 286441--287019 Score: 732
Period size: 116 Copynumber: 4.9 Consensus size: 117
286431 AAAATAAAGT
* * * *
286441 GCATCCTACTCTTTAAGGACT-AAAAAGTGCCACCAACTCGTGTGGGCTTTGAAAAGGAATGGCG
1 GCATCCTGCTCTTTGAGGACTGGAAAA-TGCCACCAACTTGTGTGGGCTTTG--AA-G-A-GGCG
* **
286505 TCATGCTCTTTGAGGACTGGAAGGTGCCACCAACTTGTGTGGGCTTTGCAAAA-AGAAA
60 TCCTGCTCTTTGAGGACTGGAAAATGCCACCAACTTGTGTGGGCTTTG-AAAAGAGAAA
*
286563 GCATCCTGCTCTTTAAGGACTGGAAAATGCCACCAACTTGTGTGGGCTTTGAA-AGGCGTCCTGC
1 GCATCCTGCTCTTTGAGGACTGGAAAATGCCACCAACTTGTGTGGGCTTTGAAGAGGCGTCCTGC
* **
286627 TCTTTAAGGACTGGAAAATGCCACCAACTTGCATGGGCTTT---AAGAG---
66 TCTTTGAGGACTGGAAAATGCCACCAACTTGTGTGGGCTTTGAAAAGAGAAA
*
286673 GCATCCTGCTCTTTGAGGACTGGAAGATGCCACCAACTTGTGTGGGCTTT-AAGAGGCGTCCTGC
1 GCATCCTGCTCTTTGAGGACTGGAAAATGCCACCAACTTGTGTGGGCTTTGAAGAGGCGTCCTGC
286737 TCTTTGAGGACTGGAAAATGCCACCAACTTGTGTGGGCTTTGAAAAGAGAAA
66 TCTTTGAGGACTGGAAAATGCCACCAACTTGTGTGGGCTTTGAAAAGAGAAA
286789 GCATCCTGCTCTTTGAGGACTGGAAAATGCCACCAACTTGTGTGGGCTTTGAA-AGGCGTCCTGC
1 GCATCCTGCTCTTTGAGGACTGGAAAATGCCACCAACTTGTGTGGGCTTTGAAGAGGCGTCCTGC
* *
286853 TCTTTGAGGACTGGAAAATGCCACCAACTTGTGTGAGCTTTGAAAGGA-AAA
66 TCTTTGAGGACTGGAAAATGCCACCAACTTGTGTGGGCTTTGAAAAGAGAAA
* * * *
286904 GGCGTCTTGCTCTTTGAGGACTGGGAAGTGCCACCAACTTGTGTGGGCTTTGAAAGGAAAAGGCG
1 -GCATCCTGCTCTTTGAGGACTGGAAAATGCCACCAACTTGTGTGGGCTTTG-AA-G---AGGCG
* *** * **
286969 TCCTGCTCTTTGAGGACTAGAGGGTGCCACTAACTCATGTGGGCTTTGAAA
60 TCCTGCTCTTTGAGGACTGGAAAATGCCACCAACTTGTGTGGGCTTTGAAA
287020 GGCGTCCTGC
Statistics
Matches: 411, Mismatches: 29, Indels: 34
0.87 0.06 0.07
Matches are distributed among these distances:
109 2 0.00
110 97 0.24
112 2 0.00
113 7 0.02
115 3 0.01
116 198 0.48
117 5 0.01
120 2 0.00
122 91 0.22
123 4 0.01
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (117 bp):
GCATCCTGCTCTTTGAGGACTGGAAAATGCCACCAACTTGTGTGGGCTTTGAAGAGGCGTCCTGC
TCTTTGAGGACTGGAAAATGCCACCAACTTGTGTGGGCTTTGAAAAGAGAAA
Found at i:287116 original size:94 final size:94
Alignment explanation
Indices: 286955--287138 Score: 284
Period size: 94 Copynumber: 2.0 Consensus size: 94
286945 TGTGGGCTTT
*
286955 GAAAGGAAAAGGCGTCCTGCTCTTTGAGGACTAGAGGGTGCCACTAACTCATGTGGGCTTTGAAA
1 GAAAGGAAAAGGCGTCCTGCTCTTTGAGGACTAGAGGGTGCCACCAACTCATGTGGGCTTTGAAA
287020 GGCGTCCTGCTCTTTGAGGACTAAAGGGC
66 GGCGTCCTGCTCTTTGAGGACTAAAGGGC
**
287049 GAAAGGAGAAA-GCGTCCTGCTCTTTGAGGACT-G-GGAAGTGCCACCAACTTGTGTGGGCTTTG
1 GAAAGGA-AAAGGCGTCCTGCTCTTTGAGGACTAGAGG--GTGCCACCAACTCATGTGGGCTTTG
*
287111 AAAGGCGTCCTGCTGTTTGAGGACTAAA
63 AAAGGCGTCCTGCTCTTTGAGGACTAAA
287139 AAATGGAAGG
Statistics
Matches: 83, Mismatches: 4, Indels: 6
0.89 0.04 0.06
Matches are distributed among these distances:
92 2 0.02
93 1 0.01
94 77 0.93
95 3 0.04
ACGTcount: A:0.24, C:0.20, G:0.32, T:0.24
Consensus pattern (94 bp):
GAAAGGAAAAGGCGTCCTGCTCTTTGAGGACTAGAGGGTGCCACCAACTCATGTGGGCTTTGAAA
GGCGTCCTGCTCTTTGAGGACTAAAGGGC
Found at i:288100 original size:1 final size:1
Alignment explanation
Indices: 288094--288184 Score: 65
Period size: 1 Copynumber: 91.0 Consensus size: 1
288084 TAGGTTCTTC
* * * * * * * *
288094 TTTTTTTTTTCTTTTTTCTTTGTTTTGTTTTTTGTTTTTTTTTTTCTGTTTTTTTTGTTTTTTTT
1 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
* * * * *
288159 TGTTGTTTTTGTTTTGTTTGTTTTTT
1 TTTTTTTTTTTTTTTTTTTTTTTTTT
288185 GAAAAAGAAT
Statistics
Matches: 64, Mismatches: 26, Indels: 0
0.71 0.29 0.00
Matches are distributed among these distances:
1 64 1.00
ACGTcount: A:0.00, C:0.03, G:0.11, T:0.86
Consensus pattern (1 bp):
T
Found at i:288126 original size:28 final size:27
Alignment explanation
Indices: 288094--288184 Score: 100
Period size: 28 Copynumber: 3.4 Consensus size: 27
288084 TAGGTTCTTC
*
288094 TTTTTTTTTTCTTTTTTCTTTGTTTTG
1 TTTTTTTTTTTTTTTTTCTTTGTTTTG
288121 TTTTTTGTTTTTTTTTTTC--TGTTTT-
1 TTTTTT-TTTTTTTTTTTCTTTGTTTTG
288146 TTTTGTTTTTTTTTGTTGTT-TTTGTTTTG
1 TTTT-TTTTTTTTT-TT-TTCTTTGTTTTG
*
288175 TTTGTTTTTT
1 TTTTTTTTTT
288185 GAAAAAGAAT
Statistics
Matches: 55, Mismatches: 2, Indels: 13
0.79 0.03 0.19
Matches are distributed among these distances:
25 11 0.20
26 10 0.18
27 8 0.15
28 23 0.42
29 3 0.05
ACGTcount: A:0.00, C:0.03, G:0.11, T:0.86
Consensus pattern (27 bp):
TTTTTTTTTTTTTTTTTCTTTGTTTTG
Found at i:288140 original size:35 final size:36
Alignment explanation
Indices: 288094--288184 Score: 125
Period size: 35 Copynumber: 2.5 Consensus size: 36
288084 TAGGTTCTTC
288094 TTTTTTTTTTCT-TTTTTCTTTGTTTTGTTTT-TTGT
1 TTTTTTTTTTCTGTTTTT-TTTGTTTTGTTTTGTTGT
*
288129 TTTTTTTTTTCTGTTTTTTTTGTTTTTTTTTGTTGT
1 TTTTTTTTTTCTGTTTTTTTTGTTTTGTTTTGTTGT
288165 TTTTGTTTTGTT-TGTTTTTT
1 TTTT-TTTT-TTCTGTTTTTT
288185 GAAAAAGAAT
Statistics
Matches: 51, Mismatches: 1, Indels: 6
0.88 0.02 0.10
Matches are distributed among these distances:
35 24 0.47
36 13 0.25
37 12 0.24
38 2 0.04
ACGTcount: A:0.00, C:0.03, G:0.11, T:0.86
Consensus pattern (36 bp):
TTTTTTTTTTCTGTTTTTTTTGTTTTGTTTTGTTGT
Found at i:291762 original size:19 final size:19
Alignment explanation
Indices: 291738--291792 Score: 101
Period size: 19 Copynumber: 2.9 Consensus size: 19
291728 AATTCAACGA
291738 TTTGTATCGATACATAAGT
1 TTTGTATCGATACATAAGT
291757 TTTGTATCGATACATAAGT
1 TTTGTATCGATACATAAGT
*
291776 ATTGTATCGATACATAA
1 TTTGTATCGATACATAA
291793 TTAGCTACTA
Statistics
Matches: 35, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
19 35 1.00
ACGTcount: A:0.35, C:0.11, G:0.15, T:0.40
Consensus pattern (19 bp):
TTTGTATCGATACATAAGT
Found at i:294254 original size:51 final size:53
Alignment explanation
Indices: 294197--294351 Score: 217
Period size: 54 Copynumber: 2.9 Consensus size: 53
294187 AATTCTCCAC
* * * *
294197 AATCGGGGATATTCCAACTCCGATTTTATTTTC-AAGACACTAATTTT-CTATT
1 AATCGGGGATACTCCAACTCCGATTTTATTTCCAAAAACACCAATTTTCCT-TT
294249 -ATCGGGGATACTCCAACTCCGATTTTATTTCCAAAAAACACCAATTTTCCTTT
1 AATCGGGGATACTCCAACTCCGATTTTATTTCC-AAAAACACCAATTTTCCTTT
*
294302 AATCGGGGATACTCCAACTCCGATTTTATTTCCAAAAATACCAATGTTTC
1 AATCGGGGATACTCCAACTCCGATTTTATTTCCAAAAACACCAAT-TTTC
294352 ACAGTCGAGG
Statistics
Matches: 93, Mismatches: 5, Indels: 8
0.88 0.05 0.08
Matches are distributed among these distances:
51 30 0.32
53 25 0.27
54 38 0.41
ACGTcount: A:0.30, C:0.23, G:0.11, T:0.35
Consensus pattern (53 bp):
AATCGGGGATACTCCAACTCCGATTTTATTTCCAAAAACACCAATTTTCCTTT
Found at i:294391 original size:28 final size:28
Alignment explanation
Indices: 294360--294431 Score: 90
Period size: 28 Copynumber: 2.6 Consensus size: 28
294350 TCACAGTCGA
** * **
294360 GGATACTCCAACCTTGTTATTTCATCGG
1 GGATACTCCAACCCCGTTACTTCAGAGG
*
294388 GGATACTCCAACCCCGTTACTTCCGAGG
1 GGATACTCCAACCCCGTTACTTCAGAGG
294416 GGATACTCCAACCCCG
1 GGATACTCCAACCCCG
294432 GCTTTATTCC
Statistics
Matches: 38, Mismatches: 6, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
28 38 1.00
ACGTcount: A:0.22, C:0.33, G:0.19, T:0.25
Consensus pattern (28 bp):
GGATACTCCAACCCCGTTACTTCAGAGG
Found at i:294564 original size:80 final size:79
Alignment explanation
Indices: 294385--294590 Score: 216
Period size: 80 Copynumber: 2.6 Consensus size: 79
294375 GTTATTTCAT
* *
294385 CGGGGATACTCCAACCCCGTTACTTCCGAGGGGATACTCCAACCCCGGCTTTATTCCCAAAATAT
1 CGGGGATACTCCAACCCCGTTATTTTCGAGGGGATACTCCAACCCCGGCTTTATTCCCAAAATAT
* * *
294450 TGATTTCTCATAAT
66 CGATTTCTCACAAC
* * * ** * ** *
294464 TGGGGATGCTCCAACCCCGTTATTTTCGAGGGGATACTCCAATCCCGATTTTTTTTTTC-TAATC
1 CGGGGATACTCCAACCCCGTTATTTTCGAGGGGATACTCCAACCCCG-GCTTTATTCCCAAAAT-
294528 ATCGATTTCTCACAAC
64 ATCGATTTCTCACAAC
* * * * *
294544 CGGGGATACTCCAGCCCCGTTATTTTCAAGGGAACACTCCAGCCCCG
1 CGGGGATACTCCAACCCCGTTATTTTCGAGGGGATACTCCAACCCCG
294591 TTATTATCTC
Statistics
Matches: 103, Mismatches: 22, Indels: 3
0.80 0.17 0.02
Matches are distributed among these distances:
79 45 0.44
80 58 0.56
ACGTcount: A:0.23, C:0.30, G:0.18, T:0.29
Consensus pattern (79 bp):
CGGGGATACTCCAACCCCGTTATTTTCGAGGGGATACTCCAACCCCGGCTTTATTCCCAAAATAT
CGATTTCTCACAAC
Found at i:304859 original size:51 final size:51
Alignment explanation
Indices: 304781--304900 Score: 154
Period size: 51 Copynumber: 2.4 Consensus size: 51
304771 GTGAAAACAA
*
304781 CAGGGTTGGAGTATCCCCAATTATGAGAAATCAATATTTTAGAAATAAGAC
1 CAGGGTTGAAGTATCCCCAATTATGAGAAATCAATATTTTAGAAATAAGAC
** * *
304832 CAGGGTTGAAGTATCCCTGATTGTGAGAAATCAATATTTTGGAAATAA-AGC
1 CAGGGTTGAAGTATCCCCAATTATGAGAAATCAATATTTTAGAAATAAGA-C
*
304883 CGGGGTT-AGAGTATCCCC
1 CAGGGTTGA-AGTATCCCC
304901 CTGGAAAAAA
Statistics
Matches: 60, Mismatches: 7, Indels: 4
0.85 0.10 0.06
Matches are distributed among these distances:
50 2 0.03
51 58 0.97
ACGTcount: A:0.34, C:0.15, G:0.23, T:0.28
Consensus pattern (51 bp):
CAGGGTTGAAGTATCCCCAATTATGAGAAATCAATATTTTAGAAATAAGAC
Found at i:304878 original size:130 final size:127
Alignment explanation
Indices: 304603--304928 Score: 336
Period size: 130 Copynumber: 2.5 Consensus size: 127
304593 ACGAGAAATT
* * *
304603 TAATATTTTGGAGATAATAACGGGGTTAGAGTATCCCCTCGAAAATAACGGGGTTGGAGTATCCT
1 TAATATTTTGGAAATAA-AACGGGGTTAGAGTATCCCCTCGAAAA-AACAGGGTTGGAGTATCCC
* * * * *
304668 CGATTGTGAAAAATCGATGATTTAGAAATAAGGCAAGGGTTGAAGTGTCTCCGATTAT-AGAAAA
64 CAATTATGAAAAATCAATGATTTAGAAATAAGACAAGGGTTGAAGTATCTCCGATTATGAG-AAA
* *** * *
304732 TAGATGTTTCAAAAATAAAATCGGGATTGGAGTATCCCCGT-GAAAACAACAGGGTTGGAGTATC
1 TA-ATATTTTGGAAATAAAA-CGGGGTTAGAGTATCCCC-TCGAAAA-AACAGGGTTGGAGTATC
* * *
304796 CCCAATTATGAGAAATCAAT-ATTTTAGAAATAAGACCAGGGTTGAAGTATC-CCTGATTGTGAG
62 CCCAATTATGAAAAATCAATGA-TTTAGAAATAAGACAAGGGTTGAAGTATCTCC-GATTATGAG
304859 AAA
125 AAA
* * *
304862 TCAATATTTTGGAAATAAAGCCGGGGTTAGAGTATCCCCCTGGAAAAAACTGGGTTGGAGTATCC
1 T-AATATTTTGGAAATAAA-ACGGGGTTAGAGTAT-CCCCTCGAAAAAACAGGGTTGGAGTATCC
304927 CC
63 CC
304929 GATGAAATAA
Statistics
Matches: 161, Mismatches: 26, Indels: 19
0.78 0.13 0.09
Matches are distributed among these distances:
129 7 0.04
130 141 0.88
131 13 0.08
ACGTcount: A:0.35, C:0.14, G:0.24, T:0.27
Consensus pattern (127 bp):
TAATATTTTGGAAATAAAACGGGGTTAGAGTATCCCCTCGAAAAAACAGGGTTGGAGTATCCCCA
ATTATGAAAAATCAATGATTTAGAAATAAGACAAGGGTTGAAGTATCTCCGATTATGAGAAA
Found at i:304922 original size:28 final size:28
Alignment explanation
Indices: 304883--304959 Score: 84
Period size: 28 Copynumber: 2.8 Consensus size: 28
304873 GAAATAAAGC
* *
304883 CGGGGTTAGAGTATCCCC-CTGGAAAAAA
1 CGGGGTTGGAGTATCCCCGAT-GAAAAAA
* *
304911 CTGGGTTGGAGTATCCCCGATGAAATAA
1 CGGGGTTGGAGTATCCCCGATGAAAAAA
* *
304939 CGGGGCTGGAGTATCCTCGAT
1 CGGGGTTGGAGTATCCCCGAT
304960 TGTGAAAAAT
Statistics
Matches: 41, Mismatches: 7, Indels: 2
0.82 0.14 0.04
Matches are distributed among these distances:
28 40 0.98
29 1 0.02
ACGTcount: A:0.26, C:0.21, G:0.31, T:0.22
Consensus pattern (28 bp):
CGGGGTTGGAGTATCCCCGATGAAAAAA
Found at i:305011 original size:51 final size:51
Alignment explanation
Indices: 304945--305058 Score: 147
Period size: 51 Copynumber: 2.2 Consensus size: 51
304935 ATAACGGGGC
* * *
304945 TGGAGTATCCTCGATTGTGAAAAATTAGTGTTTTGGAAATAAAATCAGAGT
1 TGGAGTATCCCCGATTGTGAAAAATTAGTGTTTTAGAAATAAAACCAGAGT
* * * * * *
304996 TGGAATATCCCCGATTGTGGAGAATTGGTGTTTTAGAAATAAAACCGGGGT
1 TGGAGTATCCCCGATTGTGAAAAATTAGTGTTTTAGAAATAAAACCAGAGT
305047 TGGAGTATCCCC
1 TGGAGTATCCCC
305059 TCAAAAGTAA
Statistics
Matches: 53, Mismatches: 10, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
51 53 1.00
ACGTcount: A:0.31, C:0.12, G:0.26, T:0.31
Consensus pattern (51 bp):
TGGAGTATCCCCGATTGTGAAAAATTAGTGTTTTAGAAATAAAACCAGAGT
Found at i:305046 original size:158 final size:158
Alignment explanation
Indices: 304753--305089 Score: 360
Period size: 158 Copynumber: 2.1 Consensus size: 158
304743 AAAATAAAAT
* * *
304753 CGGGATTGGAGTATCCCCG-TGAAAACAACAGGGTTGGAGTATCCCCAATTATGAGAAATCAATA
1 CGGGGTTGGAGTATCCCCGATGAAAACAACAGGGCTGGAGTATCCCCAATTATGAAAAATCAATA
* * * * *
304817 TTTTAGAAATAAGACCAGGGTTGAAGTATCCCTGATTGTGAGAAATCAATATTTTGGAAATAAAG
66 TTTTAGAAATAAAACCAGAGTTGAAGTATCCCCGATTGTGAGAAATCAATATTTTAGAAATAAAA
*
304882 CCGGGGTTAGAGTATCCCCCTGGAAAA-AA
131 CCGGGGTTAGAGTAT-CCCCT-CAAAAGAA
* * * * * * * * *
304911 CTGGGTTGGAGTATCCCCGATG-AAATAACGGGGCTGGAGTATCCTCGATTGTGAAAAATTAGTG
1 CGGGGTTGGAGTATCCCCGATGAAAACAACAGGGCTGGAGTATCCCCAATTATGAAAAATCAATA
* * *** *
304975 TTTTGGAAATAAAATCAGAGTTGGAA-TATCCCCGATTGTG-GAGAATTGGTGTTTTAGAAATAA
66 TTTTAGAAATAAAACCAGAGTT-GAAGTATCCCCGATTGTGAGA-AATCAATATTTTAGAAATAA
*
305038 AACCGGGGTTGGAGTATCCCCTCAAAAGTAA
129 AACCGGGGTTAGAGTATCCCCTCAAAAG-AA
*
305069 CGGGGTTGGAATATCCCCGAT
1 CGGGGTTGGAGTATCCCCGAT
305090 TAAGAAAAAT
Statistics
Matches: 147, Mismatches: 27, Indels: 10
0.80 0.15 0.05
Matches are distributed among these distances:
156 4 0.03
157 7 0.05
158 131 0.89
159 5 0.03
ACGTcount: A:0.32, C:0.15, G:0.26, T:0.26
Consensus pattern (158 bp):
CGGGGTTGGAGTATCCCCGATGAAAACAACAGGGCTGGAGTATCCCCAATTATGAAAAATCAATA
TTTTAGAAATAAAACCAGAGTTGAAGTATCCCCGATTGTGAGAAATCAATATTTTAGAAATAAAA
CCGGGGTTAGAGTATCCCCTCAAAAGAA
Done.