Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold1080
Parameters: 2 7 7 80 10 50 1000
Length:  24910

Tables:   1   

This is table  1  of  1  ( 14 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
22--492
54
9.0
46
87
7
173
22
33
14
29
1.93
74--1321
27
46.0
27
92
3
2093
22
35
14
27
1.93
1304--4461
32
102.8
32
87
6
4109
30
33
18
17
1.95
74--4461
32
148.3
29
87
7
2363
28
33
17
20
1.95
1304--4461
95
34.3
95
86
7
4079
30
33
18
17
1.95
4494--4612
49
2.5
47
80
9
127
19
29
22
28
1.98
5693--5733
11
3.5
11
81
12
55
78
0
19
2
0.87
10445--10485
21
1.9
22
90
5
66
43
17
17
21
1.87
11326--11453
51
2.5
52
84
5
179
29
14
17
38
1.89
11462--11486
13
1.9
13
100
0
50
36
16
16
32
1.90
11569--11632
19
3.7
18
76
23
75
37
17
14
31
1.89
11587--11613
13
2.1
13
100
0
54
40
14
14
29
1.86
11531--11632
32
3.2
32
90
4
154
38
16
13
31
1.88
20499--20849
175
2.0
175
98
0
675
20
23
18
36
1.95

Tables:   1

The End!