Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Scaffold1083
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 33907
ACGTcount: A:0.33, C:0.16, G:0.21, T:0.30
Found at i:1504 original size:474 final size:475
Alignment explanation
Indices: 2--2139 Score: 3380
Period size: 474 Copynumber: 4.5 Consensus size: 475
1 G
*
2 TGTTTGGCTCATTTGAGGCACAAACTTAGACTTTACAAAAATTGGTAAGGGGAAAGCCTTTCTAG
1 TGTTTGGCTCATTTGAGGCACAAACTTAGACTTTACAAAAATTGGTAGGGGGAAAGCCTTTCTAG
67 CGAAA-CAAAGAATCAATATCGTGCATCCTTATGAGAAGACTGCATTTATGGTGCCTAATCTCGA
66 CGAAACCAAAGAATCAATATCGTGCATCCTTATGAGAAGACTGCATTTATGGTGCCTAATCTCGA
131 AAAGAATGGGAATTAGTATGACTATTCATATTTGTCTTA-TTAAGAGGCAAACTTTGATTCTATC
131 AAAGAATGGGAATTAGTATGACTATTCATATTTGTCTTATTTAAGAGGCAAACTTTGATTCTATC
195 AAAAATGGTGAAAAGAAAAGCCTTTCTTGCGACACCAAAGCATCACTGTCATGTATCCTAATGAA
196 AAAAATGGTGAAAAGAAAAGCCTTTCTTGCGACACCAAAGCATCACTGTCATGTATCCTAATGAA
* *
260 GGGAATGTGTTTTTGGTTCCAAATCCTGAAAAGAACGGAGACTATTACGAGAATCGATGCTAGTC
261 GGGAATGTGTTTTTGGTTCCCAATCCTGAAAAGAACGGAGACTATTACAAGAATCGATGCTAGTC
*
325 TTATTTAAGGGATGAACTTTTATTTTAAGGAAAATAGGGCAAAGAAAAGATTTCCGCGCAAAAGA
326 TTATTTAAGGGATGAACTTTTATTTTAAGGAAAATAGGGCAAAGAAAAGATTTCCACGCAAAAGA
* *
390 AATCCTCAATATCATTTATCCTAACGAGGAGAATATGTTCATAGTGCCTAATCACAAAATGAATG
391 AATCATCAATATCATTTATCCTAACGAGGAGAATATGTTCATAGTGCCGAATCACAAAATGAATG
455 AAGATCAATACTAGAATCCT
456 AAGATCAATACTAGAATCCT
*
475 TG-TTGGCTCATTTGAGGCACAAACTTAGACTTTACAAAAATTGGCA-GGGGAAAGCCTTTCTAG
1 TGTTTGGCTCATTTGAGGCACAAACTTAGACTTTACAAAAATTGGTAGGGGGAAAGCCTTTCTAG
* *
538 CGAATCCAAAGAATCAATATCGTGCATCCTTATGAGAAGACTGCATTTATGGTGCCTAATCTTGA
66 CGAAACCAAAGAATCAATATCGTGCATCCTTATGAGAAGACTGCATTTATGGTGCCTAATCTCGA
603 AAAGAATGGGAATTAGTATGACTATTCATATTTGTCTTATTTAAGAGGCAAACTTTGATTCTATC
131 AAAGAATGGGAATTAGTATGACTATTCATATTTGTCTTATTTAAGAGGCAAACTTTGATTCTATC
* *
668 AAAAACGGTGAAAAGAAAAAGCCTTTCTTGCGACACCAAAGTATCACTGTCATGTATCCTAATGA
196 AAAAATGGTGAAAAG-AAAAGCCTTTCTTGCGACACCAAAGCATCACTGTCATGTATCCTAATGA
733 AGGGAATGTGTTTTTTGGTTCCCAATCCTGAAAAGAACGGAGACTATTACAAGAATCGATGCTAG
260 AGGGAATGTG-TTTTTGGTTCCCAATCCTGAAAAGAACGGAGACTATTACAAGAATCGATGCTAG
* *
798 TCTTATTTAAGGGATGAACTTTTATTTTAAGGAAAATAGGGCAAAGAAAAGATTTTCGCGCAAAA
324 TCTTATTTAAGGGATGAACTTTTATTTTAAGGAAAATAGGGCAAAGAAAAGATTTCCACGCAAAA
* *
863 GAAATCCTCAATATCATTTATCCTAACGAGGAGAATATGTTCATAGTGCCTAATCACAAAATGAA
389 GAAATCATCAATATCATTTATCCTAACGAGGAGAATATGTTCATAGTGCCGAATCACAAAATGAA
928 TGAAGATCAATACTAGAATCCT
454 TGAAGATCAATACTAGAATCCT
*
950 TGTTTGGCTCATTTGAGGCACAAACTTAGACTTTACAAAAATTGGCAGGGGGAAAGCCTTTCTAG
1 TGTTTGGCTCATTTGAGGCACAAACTTAGACTTTACAAAAATTGGTAGGGGGAAAGCCTTTCTAG
* *
1015 CGAAACTAAAGAATCAATATCGTGCATCCTTTTGAGAAGACTGCATTTATGGTGCCTAATCTCGA
66 CGAAACCAAAGAATCAATATCGTGCATCCTTATGAGAAGACTGCATTTATGGTGCCTAATCTCGA
1080 AAAGAATGGGAATTAGTATGACTATTCATATTTGTCTTATTTAAGAGGCAAACTTTGATTCTATC
131 AAAGAATGGGAATTAGTATGACTATTCATATTTGTCTTATTTAAGAGGCAAACTTTGATTCTATC
1145 AAAAATGGTGAAAAGAAAAGCCTTTCTTGCGACACCAAAGCATCACTGTCATGTATCCTAATGAA
196 AAAAATGGTGAAAAGAAAAGCCTTTCTTGCGACACCAAAGCATCACTGTCATGTATCCTAATGAA
* * *
1210 GGGAATGTGTTTTTGGTTCCCAATCCTGAAAAGAACGGAGACTATTACGAGAATCAATGTTAGTC
261 GGGAATGTGTTTTTGGTTCCCAATCCTGAAAAGAACGGAGACTATTACAAGAATCGATGCTAGTC
* * *
1275 TTATTTAAGGGATGAACTTTTATTTTAAGGAAAATATGTCAAAGAAAAGATTTCCACGCAAAGGA
326 TTATTTAAGGGATGAACTTTTATTTTAAGGAAAATAGGGCAAAGAAAAGATTTCCACGCAAAAGA
* * * * *
1340 AAT-ATCAATATTATTTATCCTAACGATGAGAGTTTGTTCATAGTGCCGAATCACAAAATTAATG
391 AATCATCAATATCATTTATCCTAACGAGGAGAATATGTTCATAGTGCCGAATCACAAAATGAATG
*
1404 AAGATTAATACTAGAATCCT
456 AAGATCAATACTAGAATCCT
* * *
1424 TGTTTGTCTCATTTAAGGCACAAACTTAGACTTTACAAAAATTGGTAGGGGGAAAGCTTTTCTAG
1 TGTTTGGCTCATTTGAGGCACAAACTTAGACTTTACAAAAATTGGTAGGGGGAAAGCCTTTCTAG
* * * ** *
1489 CAAAACCAAAGAATCAATATTGTGCATCCTTATGAGAAGACGGCGCTTATGGTGCCTAATCTCAA
66 CGAAACCAAAGAATCAATATCGTGCATCCTTATGAGAAGACTGCATTTATGGTGCCTAATCTCGA
* *
1554 AAAGAATGGGAATTAGTATGACTGTTCATATTTGTCTTATTTAAGAGCCAAACTTTGATTCTATC
131 AAAGAATGGGAATTAGTATGACTATTCATATTTGTCTTATTTAAGAGGCAAACTTTGATTCTATC
* *
1619 AAAAATGGTGAAAAGAAAAGCCTTTCTTGCGACAACAAAGCATCACTGTCGTGTATCCTAATGAA
196 AAAAATGGTGAAAAGAAAAGCCTTTCTTGCGACACCAAAGCATCACTGTCATGTATCCTAATGAA
* * * *
1684 GGGAATGTGTTTTTGGTTCCCAATCCTGAAAGGAATGGAGACTATTACAAGAATCGATGCTATTG
261 GGGAATGTGTTTTTGGTTCCCAATCCTGAAAAGAACGGAGACTATTACAAGAATCGATGCTAGTC
* * *
1749 TTATTTAAGGGATGAACTTTTAGTTTAAGGAAAATAGGGCAGAGAAAAGATTTCCACGCAAAATA
326 TTATTTAAGGGATGAACTTTTATTTTAAGGAAAATAGGGCAAAGAAAAGATTTCCACGCAAAA-G
* * * * * *
1814 AAATCATCAATATCATTTAACCTAATGAGGAGAATGTGTTTATAGTG-CGTAATCTCAAAGTGAA
390 AAATCATCAATATCATTTATCCTAACGAGGAGAATATGTTCATAGTGCCG-AATCACAAAATGAA
*
1878 TGAAGATAAATACTAGAATCCT
454 TGAAGATCAATACTAGAATCCT
* **
1900 TGTTTGGCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGGT-GGGAAAAAAGCCTTTCTT
1 TGTTTGGCTCATTTGAGGCACAAACTTAGACTTTACAAAAATTGGTAGGG-GGAAAGCCTTTC-T
* *** * * * * * *
1964 A-AGAAACCAAAGCCCCAATATCATGTATCCTAAGGTGAAGACT-AAGTTTATGGTGCCTAATCA
64 AGCGAAACCAAAGAATCAATATCGTGCATCCTTATGAGAAGACTGCA-TTTATGGTGCCTAATC-
* * * * ***
2027 T-GAAAATAAGGGGGAA-TAGTATGAGTATTCATGTTTGTCTTATTTAAGAGATGAACTTTGATT
127 TCGAAAAGAA-TGGGAATTAGTATGACTATTCATATTTGTCTTATTTAAGAGGCAAACTTTGATT
** * * *
2090 CTATCAAAAACAGTGGAAAGAAAAGCTTTTCTTGTGACACCAAAGCATCA
191 CTATCAAAAATGGTGAAAAGAAAAGCCTTTCTTGCGACACCAAAGCATCA
2140 ATGTTGTAGA
Statistics
Matches: 1545, Mismatches: 106, Indels: 25
0.92 0.06 0.01
Matches are distributed among these distances:
471 21 0.01
472 140 0.09
473 41 0.03
474 491 0.32
475 330 0.21
476 357 0.23
477 165 0.11
ACGTcount: A:0.36, C:0.15, G:0.19, T:0.30
Consensus pattern (475 bp):
TGTTTGGCTCATTTGAGGCACAAACTTAGACTTTACAAAAATTGGTAGGGGGAAAGCCTTTCTAG
CGAAACCAAAGAATCAATATCGTGCATCCTTATGAGAAGACTGCATTTATGGTGCCTAATCTCGA
AAAGAATGGGAATTAGTATGACTATTCATATTTGTCTTATTTAAGAGGCAAACTTTGATTCTATC
AAAAATGGTGAAAAGAAAAGCCTTTCTTGCGACACCAAAGCATCACTGTCATGTATCCTAATGAA
GGGAATGTGTTTTTGGTTCCCAATCCTGAAAAGAACGGAGACTATTACAAGAATCGATGCTAGTC
TTATTTAAGGGATGAACTTTTATTTTAAGGAAAATAGGGCAAAGAAAAGATTTCCACGCAAAAGA
AATCATCAATATCATTTATCCTAACGAGGAGAATATGTTCATAGTGCCGAATCACAAAATGAATG
AAGATCAATACTAGAATCCT
Found at i:1910 original size:950 final size:948
Alignment explanation
Indices: 2--2139 Score: 3401
Period size: 950 Copynumber: 2.3 Consensus size: 948
1 G
*
2 TGTTTGGCTCATTTGAGGCACAAACTTAGACTTTACAAAAATTGGTAAGGGGAAAGCCTTTCTAG
1 TGTTTGGCTCATTTGAGGCACAAACTTAGACTTTACAAAAATTGG-AGGGGGAAAGCCTTTCTAG
67 CGAAACAAAGAATCAATATCGTGCATCCTTATGAGAAGACTGCATTTATGGTGCCTAATCTCGAA
65 CGAAACAAAGAATCAATATCGTGCATCCTTATGAGAAGACTGCATTTATGGTGCCTAATCTCGAA
132 AAGAATGGGAATTAGTATGACTATTCATATTTGTCTTA-TTAAGAGGCAAACTTTGATTCTATCA
130 AAGAATGGGAATTAGTATGACTATTCATATTTGTCTTATTTAAGAGGCAAACTTTGATTCTATCA
196 AAAATGGTGAAAAGAAAAGCCTTTCTTGCGACACCAAAGCATCACTGTCATGTATCCTAATGAAG
195 AAAATGGTGAAAAGAAAAGCCTTTCTTGCGACACCAAAGCATCACTGTCATGTATCCTAATGAAG
*
261 GGAATGTGTTTTTGGTTCCAAATCCTGAAAAGAACGGAGACTATTACGAGAATCGATGCTAGTCT
260 GGAATGTGTTTTTGGTTCCAAATCCTGAAAAGAACGGAGACTATTACGAGAATCAATGCTAGTCT
*
326 TATTTAAGGGATGAACTTTTATTTTAAGGAAAATAGGGCAAAGAAAAGATTTCCGCGCAAAAGAA
325 TATTTAAGGGATGAACTTTTATTTTAAGGAAAATAGGGCAAAGAAAAGATTTCCACGCAAAAGAA
* *
391 ATCCTCAATATCATTTATCCTAACGAGGAGAATATGTTCATAGTGCCTAATCACAAAATGAATGA
390 ATCATCAATATCATTTATCCTAACGAGGAGAATATGTTCATAGTGCCGAATCACAAAATGAATGA
*
456 AGATCAATACTAGAATCCTTGTTGGCTCATTTGAGGCACAAACTTAGACTTTACAAAAATTGGCA
455 AGATCAATACTAGAATCCTTGTTGGCTCATTTAAGGCACAAACTTAGACTTTACAAAAATTGGCA
* * * *
521 GGGGAAAGCCTTTCTAGCGAATCCAAAGAATCAATATCGTGCATCCTTATGAGAAGACTGCATTT
520 GGGGAAAGCCTTTCTAGCAAAACCAAAGAATCAATATCGTGCATCCTTATGAGAAGACGGCACTT
** *
586 ATGGTGCCTAATCTTGAAAAGAATGGGAATTAGTATGACTATTCATATTTGTCTTATTTAAGAGG
585 ATGGTGCCTAATCTCAAAAAGAATGGGAATTAGTATGACTATTCATATTTGTCTTATTTAAGAGC
* *
651 CAAACTTTGATTCTATCAAAAACGGTGAAAAGAAAAAGCCTTTCTTGCGACACCAAAGTATCACT
650 CAAACTTTGATTCTATCAAAAACGGTGAAAAGAAAAAGCCTTTCTTGCGACAACAAAGCATCACT
716 GTCATGTATCCTAATGAAGGGAATGTGTTTTTTGGTTCCCAATCCTGAAAAGAACGGAGACTATT
715 GTCATGTATCCTAATGAAGGGAATGTGTTTTTTGGTTCCCAATCCTGAAAAGAACGGAGACTATT
*
781 ACAAGAATCGATGCTAGTCTTATTTAAGGGATGAACTTTTATTTTAAGGAAAATAGGGCAAAGAA
780 ACAAGAATCGATGCTAGTCTTATTTAAGGGATGAACTTTTAGTTTAAGGAAAATAGGGCAAAGAA
* * * * *
846 AAGATTTTCGCGCAAAAGAAATCCTCAATATCATTTATCCTAACGAGGAGAATATGTTCATAGTG
845 AAGATTTCCACGCAAAAAAAATCATCAATATCATTTAACCTAACGAGGAGAATATGTTCATAGTG
*
911 CCTAATCACAAAATGAATGAAGATCAATACTAGAATCCT
910 CCTAATCACAAAATGAATGAAGATAAATACTAGAATCCT
950 TGTTTGGCTCATTTGAGGCACAAACTTAGACTTTACAAAAATTGGCAGGGGGAAAGCCTTTCTAG
1 TGTTTGGCTCATTTGAGGCACAAACTTAGACTTTACAAAAATTGG-AGGGGGAAAGCCTTTCTAG
*
1015 CGAAACTAAAGAATCAATATCGTGCATCCTTTTGAGAAGACTGCATTTATGGTGCCTAATCTCGA
65 CGAAAC-AAAGAATCAATATCGTGCATCCTTATGAGAAGACTGCATTTATGGTGCCTAATCTCGA
1080 AAAGAATGGGAATTAGTATGACTATTCATATTTGTCTTATTTAAGAGGCAAACTTTGATTCTATC
129 AAAGAATGGGAATTAGTATGACTATTCATATTTGTCTTATTTAAGAGGCAAACTTTGATTCTATC
1145 AAAAATGGTGAAAAGAAAAGCCTTTCTTGCGACACCAAAGCATCACTGTCATGTATCCTAATGAA
194 AAAAATGGTGAAAAGAAAAGCCTTTCTTGCGACACCAAAGCATCACTGTCATGTATCCTAATGAA
* *
1210 GGGAATGTGTTTTTGGTTCCCAATCCTGAAAAGAACGGAGACTATTACGAGAATCAATGTTAGTC
259 GGGAATGTGTTTTTGGTTCCAAATCCTGAAAAGAACGGAGACTATTACGAGAATCAATGCTAGTC
* * *
1275 TTATTTAAGGGATGAACTTTTATTTTAAGGAAAATATGTCAAAGAAAAGATTTCCACGCAAAGGA
324 TTATTTAAGGGATGAACTTTTATTTTAAGGAAAATAGGGCAAAGAAAAGATTTCCACGCAAAAGA
* * * * *
1340 AAT-ATCAATATTATTTATCCTAACGATGAGAGTTTGTTCATAGTGCCGAATCACAAAATTAATG
389 AATCATCAATATCATTTATCCTAACGAGGAGAATATGTTCATAGTGCCGAATCACAAAATGAATG
* *
1404 AAGATTAATACTAGAATCCTTGTTTGTCTCATTTAAGGCACAAACTTAGACTTTACAAAAATTGG
454 AAGATCAATACTAGAATCCTTG-TTGGCTCATTTAAGGCACAAACTTAGACTTTACAAAAATTGG
* * * *
1469 TAGGGGGAAAGCTTTTCTAGCAAAACCAAAGAATCAATATTGTGCATCCTTATGAGAAGACGGCG
518 CA-GGGGAAAGCCTTTCTAGCAAAACCAAAGAATCAATATCGTGCATCCTTATGAGAAGACGGCA
*
1534 CTTATGGTGCCTAATCTCAAAAAGAATGGGAATTAGTATGACTGTTCATATTTGTCTTATTTAAG
582 CTTATGGTGCCTAATCTCAAAAAGAATGGGAATTAGTATGACTATTCATATTTGTCTTATTTAAG
*
1599 AGCCAAACTTTGATTCTATCAAAAATGGTGAAAAG-AAAAGCCTTTCTTGCGACAACAAAGCATC
647 AGCCAAACTTTGATTCTATCAAAAACGGTGAAAAGAAAAAGCCTTTCTTGCGACAACAAAGCATC
* * *
1663 ACTGTCGTGTATCCTAATGAAGGGAATGTG-TTTTTGGTTCCCAATCCTGAAAGGAATGGAGACT
712 ACTGTCATGTATCCTAATGAAGGGAATGTGTTTTTTGGTTCCCAATCCTGAAAAGAACGGAGACT
* * *
1727 ATTACAAGAATCGATGCTATTGTTATTTAAGGGATGAACTTTTAGTTTAAGGAAAATAGGGCAGA
777 ATTACAAGAATCGATGCTAGTCTTATTTAAGGGATGAACTTTTAGTTTAAGGAAAATAGGGCAAA
* * *
1792 GAAAAGATTTCCACGCAAAATAAAATCATCAATATCATTTAACCTAATGAGGAGAATGTGTTTAT
842 GAAAAGATTTCCACGCAAAA-AAAATCATCAATATCATTTAACCTAACGAGGAGAATATGTTCAT
* * *
1857 AGTGCGTAATCTCAAAGTGAATGAAGATAAATACTAGAATCCT
906 AGTGCCTAATCACAAAATGAATGAAGATAAATACTAGAATCCT
* * **
1900 TGTTTGGCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGGTGGGAAAAAAGCCTTTCTTA
1 TGTTTGGCTCATTTGAGGCACAAACTTAGACTTTACAAAAATTGGAGGG-GGAAAGCCTTTC-TA
* *** * * * * * *
1965 -AGAAACCAAAGCCCCAATATCATGTATCCTAAGGTGAAGACT-AAGTTTATGGTGCCTAATCAT
64 GCGAAA-CAAAGAATCAATATCGTGCATCCTTATGAGAAGACTGCA-TTTATGGTGCCTAATC-T
* * * * ***
2028 -GAAAATAAGGGGGAA-TAGTATGAGTATTCATGTTTGTCTTATTTAAGAGATGAACTTTGATTC
126 CGAAAAGAA-TGGGAATTAGTATGACTATTCATATTTGTCTTATTTAAGAGGCAAACTTTGATTC
** * * *
2091 TATCAAAAACAGTGGAAAGAAAAGCTTTTCTTGTGACACCAAAGCATCA
190 TATCAAAAATGGTGAAAAGAAAAGCCTTTCTTGCGACACCAAAGCATCA
2140 ATGTTGTAGA
Statistics
Matches: 1098, Mismatches: 81, Indels: 20
0.92 0.07 0.02
Matches are distributed among these distances:
948 69 0.06
949 286 0.26
950 584 0.53
951 159 0.14
ACGTcount: A:0.36, C:0.15, G:0.19, T:0.30
Consensus pattern (948 bp):
TGTTTGGCTCATTTGAGGCACAAACTTAGACTTTACAAAAATTGGAGGGGGAAAGCCTTTCTAGC
GAAACAAAGAATCAATATCGTGCATCCTTATGAGAAGACTGCATTTATGGTGCCTAATCTCGAAA
AGAATGGGAATTAGTATGACTATTCATATTTGTCTTATTTAAGAGGCAAACTTTGATTCTATCAA
AAATGGTGAAAAGAAAAGCCTTTCTTGCGACACCAAAGCATCACTGTCATGTATCCTAATGAAGG
GAATGTGTTTTTGGTTCCAAATCCTGAAAAGAACGGAGACTATTACGAGAATCAATGCTAGTCTT
ATTTAAGGGATGAACTTTTATTTTAAGGAAAATAGGGCAAAGAAAAGATTTCCACGCAAAAGAAA
TCATCAATATCATTTATCCTAACGAGGAGAATATGTTCATAGTGCCGAATCACAAAATGAATGAA
GATCAATACTAGAATCCTTGTTGGCTCATTTAAGGCACAAACTTAGACTTTACAAAAATTGGCAG
GGGAAAGCCTTTCTAGCAAAACCAAAGAATCAATATCGTGCATCCTTATGAGAAGACGGCACTTA
TGGTGCCTAATCTCAAAAAGAATGGGAATTAGTATGACTATTCATATTTGTCTTATTTAAGAGCC
AAACTTTGATTCTATCAAAAACGGTGAAAAGAAAAAGCCTTTCTTGCGACAACAAAGCATCACTG
TCATGTATCCTAATGAAGGGAATGTGTTTTTTGGTTCCCAATCCTGAAAAGAACGGAGACTATTA
CAAGAATCGATGCTAGTCTTATTTAAGGGATGAACTTTTAGTTTAAGGAAAATAGGGCAAAGAAA
AGATTTCCACGCAAAAAAAATCATCAATATCATTTAACCTAACGAGGAGAATATGTTCATAGTGC
CTAATCACAAAATGAATGAAGATAAATACTAGAATCCT
Found at i:2415 original size:13 final size:13
Alignment explanation
Indices: 2397--2421 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
2387 CATAAAGTGT
2397 TGTATCGATACAA
1 TGTATCGATACAA
2410 TGTATCGATACA
1 TGTATCGATACA
2422 TATTTTTTTG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.36, C:0.16, G:0.16, T:0.32
Consensus pattern (13 bp):
TGTATCGATACAA
Found at i:2420 original size:33 final size:33
Alignment explanation
Indices: 2377--2443 Score: 89
Period size: 33 Copynumber: 2.0 Consensus size: 33
2367 TTCAATGATT
*
2377 TGTATTGATACATAAAGTGTTGTATCGATACAA
1 TGTATCGATACATAAAGTGTTGTATCGATACAA
*** *
2410 TGTATCGATACATATTTTTTTGTATCGATACAA
1 TGTATCGATACATAAAGTGTTGTATCGATACAA
2443 T
1 T
2444 TTAAGCTACT
Statistics
Matches: 29, Mismatches: 5, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
33 29 1.00
ACGTcount: A:0.33, C:0.10, G:0.15, T:0.42
Consensus pattern (33 bp):
TGTATCGATACATAAAGTGTTGTATCGATACAA
Found at i:2546 original size:52 final size:52
Alignment explanation
Indices: 2504--2613 Score: 184
Period size: 52 Copynumber: 2.1 Consensus size: 52
2494 CATTGATCTT
*
2504 TGTATCGATACATGCATGCAAATTTGCCCAGATGTATCGATACATTATAAAA
1 TGTATCGATACATGCAGGCAAATTTGCCCAGATGTATCGATACATTATAAAA
* * *
2556 TGTATCGATACATGCAGGCAAATTTTCCCAGATGTATCGATACACTATTAAA
1 TGTATCGATACATGCAGGCAAATTTGCCCAGATGTATCGATACATTATAAAA
2608 TGTATC
1 TGTATC
2614 ATGTATCGAT
Statistics
Matches: 54, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
52 54 1.00
ACGTcount: A:0.35, C:0.18, G:0.15, T:0.32
Consensus pattern (52 bp):
TGTATCGATACATGCAGGCAAATTTGCCCAGATGTATCGATACATTATAAAA
Found at i:7767 original size:475 final size:475
Alignment explanation
Indices: 5715--8232 Score: 3408
Period size: 475 Copynumber: 5.3 Consensus size: 475
5705 CGTTACGACA
* * * * * *
5715 AATGTCAAGTATCTTAATGAAGGGAATGGGTTTTAGGTTCCCAATCCTAAAAAGAATGGAGATTG
1 AATGTCATGTATCCTAATGAAGGGAATGTGTTTTTGGTTCCCAATCCTAAAAAGAATGGAGACTA
* * * * * *
5780 TTACGAGAATCGATCCTTGTCTTTTTTAAGGGATGAACATTGATTTTAAGCAAAATATGGCATAG
66 TTATGAGAATCGATGCTTGTCTTATTTAAGGGATGAACTTTGATTTTAAGGAAAATATGGCAAAG
* * * *
5845 AAAAGATTTCCACGTAAAAGAAAATCATCAAGATTATTTATCCTAAAGAGGAGAATGTGTTTATA
131 AAAAGATTTCCACGCAAAA-AAAATCATCAACATCATTTATCCTAATGAGGAGAATGTGTTTATA
*
5910 GTGTGCATAATCACAAAATGAAAT-AAGATAAATACTAGAATCCCTGTTTGGCTCATTTGAGGCA
195 --GTGCATAATCACAAAATG-AATGAAGATAAATACTAGAATCCTTGTTTGGCTCATTTGAGGCA
* * ***
5974 CGAACTTAGACTTTGCAAAAATTGGAGGGAAAAAAGCCTTTCTTAAGAAACCAAATTGCCAATAT
257 CGAACTTAGACTTTACAAAAATTGGTGGGAAAAAAGCCTTTCTTAAGAAACCAAAGCACCAATAT
* * ** ** *
6039 CATGTATCCTAAGGTGAAGACTAAGTTTATGGTGCCTAATCAAGATGAGAATGGGGAACAGTATG
322 CATGTATCCTAATGAGAAGACTAAGTTTATGGTGCCTAATCGTGAAAAGAATGGGGAAGAGTATG
* * * *
6104 AGTATGCATGTTTGTCTTATTTAAGAGTCAAACTTTGATTCTATCAAAAATGGTGGAAAGAAAGG
387 TGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAATGGTGGAAAGAAAAG
* *
6169 CTTTTCTAGCAACACCAAAGCATC
452 CTTTTCTTGCGACACCAAAGCATC
* * * * *
6193 AATGTCAAGTATCCTAATGAAGAGAATGTGTTTTTGGTTCCCAATCCTGAAAAGGATGGAGACCA
1 AATGTCATGTATCCTAATGAAGGGAATGTGTTTTTGGTTCCCAATCCTAAAAAGAATGGAGACTA
* * * *
6258 TTACGAGAGTCGATGCTTGTCTTATTCAAGGGATGAACTTTGATTTTAAGGAAAATA-GGATAAA
66 TTATGAGAATCGATGCTTGTCTTATTTAAGGGATGAACTTTGATTTTAAGGAAAATATGG-CAAA
* * * *
6322 GAAAAGTTTTCCACACAAAATAAAATCATCAATAT-ATTTTATCCTAATGAGGAGAAGGTGTTTA
130 GAAAAGATTTCCACGCAAAA-AAAATCATCAACATCA-TTTATCCTAATGAGGAGAATGTGTTTA
* * * *
6386 TAGTGCGA-AATCTCAAAATGAATGACGATAAATACTAAAATCCTTGTTTGGCTCATTTAAGGCA
193 TAGTGC-ATAATCACAAAATGAATGAAGATAAATACTAGAATCCTTGTTTGGCTCATTTGAGGCA
* *
6450 TGAACTTAGACTTTACAAAAATTGGTGGGAAAAAAGCCTTTTTTAAGAAACCAAAGCACCAATAT
257 CGAACTTAGACTTTACAAAAATTGGTGGGAAAAAAGCCTTTCTTAAGAAACCAAAGCACCAATAT
* * * *
6515 CATGTATCCTAATGAGAAGACTAAGTTTGTGGTCCCTAATCGGGGAAAGAATGGGGAAGAGTATG
322 CATGTATCCTAATGAGAAGACTAAGTTTATGGTGCCTAATCGTGAAAAGAATGGGGAAGAGTATG
* * * * * *
6580 TGTATTAATGTTTGTCTTATTTTTGAGAGGCAAACTTTGATTCTATAAAAAATAGTGGAAAAAAA
387 TGTATTCATGTTTGTCTTA--TTTAAGAGACAAACTTTGATTCTATCAAAAATGGTGGAAAGAAA
*
6645 AGCTTTTCTTGTGACACCAAAGCATC
450 AGCTTTTCTTGCGACACCAAAGCATC
* * * *
6671 AATGTCTTTTATCCTAATGAAGGGAATGTGTTTTTGGTTCCCAATCCTGAAAAGAATGGTGACTA
1 AATGTCATGTATCCTAATGAAGGGAATGTGTTTTTGGTTCCCAATCCTAAAAAGAATGGAGACTA
* * * * * *
6736 TTA-GAAGAATCAATGCTTGTCTTA-TTAAGAGAGGGACTTTGA-TTTAAGGAAAATAGGGCAGA
66 TTATG-AGAATCGATGCTTGTCTTATTTAAGGGATGAACTTTGATTTTAAGGAAAATATGGCAAA
* * * * *
6798 GAAAAGATTTCCACGTAAAAAAAATCATCAGCATCATTTCA-CCTAGTAAGGAGAATGTGTTTTT
130 GAAAAGATTTCCACGCAAAAAAAATCATCAACATCATTT-ATCCTAATGAGGAGAATGTG-TTTA
** * * * * *
6862 TAGTTTATAATCACAAAATGAATGAAGATAAAAACTAGAATCCTTGTTTGGCTTATTAGTGGCAT
193 TAGTGCATAATCACAAAATGAATGAAGATAAATACTAGAATCCTTGTTTGGCTCATTTGAGGCAC
* *
6927 GAACTTAGACTTTAAAAAAATTGGTGGGAAAAAAGCCTTTCTTAAGAAACCAAAGCTCCAATATC
258 GAACTTAGACTTTACAAAAATTGGTGGGAAAAAAGCCTTTCTTAAGAAACCAAAGCACCAATATC
* *
6992 GTGTATCCTAATGAGAAGACTAAGTTTATGGTGCCTAATCGTGAAAAGAAAGGGGAAGAG--TGT
323 ATGTATCCTAATGAGAAGACTAAGTTTATGGTGCCTAATCGTGAAAAGAATGGGGAAGAGTATGT
* ** * *
7055 GTATTCATGCTTGTCTTATTTGGGAGACAAACTTTGACTCTATCAAAAATGATGGAAAGAAAAGC
388 GTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAATGGTGGAAAGAAAAGC
*
7120 TTTTCTTGCGACACAAAAGCATC
453 TTTTCTTGCGACACCAAAGCATC
** ** *
7143 AATGTCATGTATCCTAAAAAACAGAATGTGTTTTAGGTTCCCAATCCTAAAAAGAATGGAGACTA
1 AATGTCATGTATCCTAATGAAGGGAATGTGTTTTTGGTTCCCAATCCTAAAAAGAATGGAGACTA
* * * * **
7208 TTATGGGAATTGATGCTCGTCTTATTTAAGGGATGAACTTTGATTTTAAGTAAAATATGGCATGG
66 TTATGAGAATCGATGCTTGTCTTATTTAAGGGATGAACTTTGATTTTAAGGAAAATATGGCAAAG
*
7273 AAAAGATTTCCACGCAAAAAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAG
131 AAAAGATTTCCACGCAAAAAAAATCATCAACATCATTTATCCTAATGAGGAGAATGTGTTTATAG
* * * *
7338 TGCATAATCACAAAATGAATGAAGATAAAAAGTAGAATCCTTGTTTAGCTCATTTGAGGTACGAA
196 TGCATAATCACAAAATGAATGAAGATAAATACTAGAATCCTTGTTTGGCTCATTTGAGGCACGAA
* *
7403 CTTAGACTTTACAAAAATTGGTGGGTAAAAAAGCTTTTCTTAAGAAAGCAAAGCACCAATATCAT
261 CTTAGACTTTACAAAAATTGGTGGG-AAAAAAGCCTTTCTTAAGAAACCAAAGCACCAATATCAT
*
7468 GTATCCTAAAGAGAAGACTAAGTTTATGGTGCCTAATCGTGAAAAGAATGGGGAAGAGTATGTGT
325 GTATCCTAATGAGAAGACTAAGTTTATGGTGCCTAATCGTGAAAAGAATGGGGAAGAGTATGTGT
* * * *
7533 ATTCGTGTTTGCCTTATTTAAGAGACAAACTTTGATTCTATCAAAAATGGTAGAAA-AAATGCTT
390 ATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAATGGTGGAAAGAAAAGCTT
7597 TTCTTGCGACACCAAAGCATC
455 TTCTTGCGACACCAAAGCATC
* * * *
7618 AATGTCTTGTATCCTAGTGAAGGCAATGTGTTTTTGGTTCCTAATCC-AGAAAAGAATGGAGACT
1 AATGTCATGTATCCTAATGAAGGGAATGTGTTTTTGGTTCCCAATCCTA-AAAAGAATGGAGACT
* * * *
7682 ATTATGAGAATCGATGTTTGTGTCATTTAAGGGATGTACTTTGATTTTAAGGAAAATATGGCAAA
65 ATTATGAGAATCGATGCTTGTCTTATTTAAGGGATGAACTTTGATTTTAAGGAAAATATGGCAAA
* *
7747 GAAAAGATTTTCATGCAAAAAAAATCATCAACATCATTTATCCTAATGAGGAGAATGTGTTTATA
130 GAAAAGATTTCCACGCAAAAAAAATCATCAACATCATTTATCCTAATGAGGAGAATGTGTTTATA
* * *
7812 GTGCTTAATTACAAAATGAATGAAGATAAATACTAGAATCCTTGTTTGGCTCAATTGAGGCACGA
195 GTGCATAATCACAAAATGAATGAAGATAAATACTAGAATCCTTGTTTGGCTCATTTGAGGCACGA
7877 ACTTAGACTTTACAAAAATTGGTGGGAAAAAAGCCTTTCTTAAGAAACCAAAGCACCAATATCAT
260 ACTTAGACTTTACAAAAATTGGTGGGAAAAAAGCCTTTCTTAAGAAACCAAAGCACCAATATCAT
* * * * * * *
7942 GTATCCTAGTGAGAAGACTAAGTTTATAGTGCCTAATCATGAAAAGAATGGGCAACAGCATGAGT
325 GTATCCTAATGAGAAGACTAAGTTTATGGTGCCTAATCGTGAAAAGAATGGGGAAGAGTATGTGT
* ** * * *
8007 ATTCATGTTAGTCTTATTTAAGAGATGAACTTTGATTTTATCAAAAACGATGGAAAGAAAAGCTT
390 ATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAATGGTGGAAAGAAAAGCTT
*
8072 TTCTAGC-AGCACCAAAGCATC
455 TTCTTGCGA-CACCAAAGCATC
* * *
8093 AACGTCAAGTATCCTAATGAAGGGAATGTGTTCTTT-GTTCCTAATCCTAAAAAGAATGGAGACT
1 AATGTCATGTATCCTAATGAAGGGAATGTGTT-TTTGGTTCCCAATCCTAAAAAGAATGGAGACT
* * *
8157 ATTTTGAGAATCGATGCTTGTCTTATTTAAAGGATGAACTTTGATTTTAAGGAAAATAGGGCAAA
65 ATTATGAGAATCGATGCTTGTCTTATTTAAGGGATGAACTTTGATTTTAAGGAAAATATGGCAAA
8222 GAAAAGATTTC
130 GAAAAGATTTC
8233 TGATGAAAAC
Statistics
Matches: 1789, Mismatches: 227, Indels: 51
0.87 0.11 0.02
Matches are distributed among these distances:
472 135 0.08
473 103 0.06
474 321 0.18
475 461 0.26
476 443 0.25
477 21 0.01
478 305 0.17
ACGTcount: A:0.37, C:0.13, G:0.20, T:0.30
Consensus pattern (475 bp):
AATGTCATGTATCCTAATGAAGGGAATGTGTTTTTGGTTCCCAATCCTAAAAAGAATGGAGACTA
TTATGAGAATCGATGCTTGTCTTATTTAAGGGATGAACTTTGATTTTAAGGAAAATATGGCAAAG
AAAAGATTTCCACGCAAAAAAAATCATCAACATCATTTATCCTAATGAGGAGAATGTGTTTATAG
TGCATAATCACAAAATGAATGAAGATAAATACTAGAATCCTTGTTTGGCTCATTTGAGGCACGAA
CTTAGACTTTACAAAAATTGGTGGGAAAAAAGCCTTTCTTAAGAAACCAAAGCACCAATATCATG
TATCCTAATGAGAAGACTAAGTTTATGGTGCCTAATCGTGAAAAGAATGGGGAAGAGTATGTGTA
TTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAATGGTGGAAAGAAAAGCTTT
TCTTGCGACACCAAAGCATC
Found at i:7991 original size:158 final size:156
Alignment explanation
Indices: 5883--7991 Score: 551
Period size: 158 Copynumber: 13.3 Consensus size: 156
5873 CAAGATTATT
* * * *
5883 TATCCTAAAGAGGAGAATGTGTTTATAGTGTGCATAATCACAAAATGAAAT-AAGATAAATACT-
1 TATCCTAATGAGAAGAATGTGTTTATA--GTGCCTAATCAGAAAA-G-AATGAAGATAAATA-TG
* * * *
5946 AGAATCCCTGTTTGGCTCATTTGAGGCACGAACTTAGACTTTGCAAAAATTGGAGGGAAAAAAGC
61 AGAATCCTTGTTTGGCTCATTTAAGG-ACGAACTTAGACTTTACAAAAATTGGTGGGAAAAAAGC
* ***
6011 CTTTCTTAAGAAACCAAATTGCCAATATCATG
125 TTTTCTTAAGAAACCAAAGCACCAATATCATG
* * * ** * ** ** * *
6043 TATCCTAAGGTGAAGACTAAGTTTATGGTGCCTAATCAAGATGAGAATGGGGA-ACAGTATGAGT
1 TATCCTAATGAGAAGAATGTGTTTATAGTGCCTAATC-AGAAAAGAATGAAGATA-AATATGAGA
* * * * * * *
6107 ATGCATGTTTGTCTTATTTAAGAGTCAAACTTTGA-TTCTATCAAAAA-TGGT-GGAAAGAAAGG
64 ATCCTTGTTTGGCTCATTTAAG-GACGAACTTAGACTT-TA-CAAAAATTGGTGGGAAA-AAA-G
* * *
6169 CTTTTC-T-AGCAACACCAAAGCATCAATGTCAAG
124 CTTTTCTTAAG-AA-ACCAAAGCACCAATATCATG
* * * * * * * ** * *
6202 TATCCTAATGA-AGAGAATGTGTTTTTGGTTCCCAATCCTGAAAAGGATGGAGACCATTACGAGA
1 TATCCTAATGAGA-AGAATGTGTTTATAGTGCCTAAT-CAGAAAAGAATGAAGATAAATATGAGA
* ** * * * * * * * * *
6266 GTCGATGCTTGTCTTATTCAAGGGATGAACTTTGATTTTA-AGGAAAATAGGAT--AAAGAAAAG
64 ATCCTTGTTTGGCTCATTTAA-GGACGAACTTAGACTTTACA--AAAATTGG-TGGGAA-AAAAG
* * ** * * *
6328 -TTTTC-CACACAAAATAAAATCATCAATAT-ATTT
124 CTTTTCTTA-A-GAAACCAAAGCACCAATATCA-TG
* * ** ** * *
6361 TATCCTAATGAGGAGAAGGTGTTTATAGTGCGAAATCTCAAAATGAATGACGATAAATACT-AAA
1 TATCCTAATGAGAAGAATGTGTTTATAGTGCCTAATCAGAAAA-GAATGAAGATAAATA-TGAGA
*
6425 ATCCTTGTTTGGCTCATTTAAGGCATGAACTTAGACTTTACAAAAATTGGTGGGAAAAAAGCCTT
64 ATCCTTGTTTGGCTCATTTAAGG-ACGAACTTAGACTTTACAAAAATTGGTGGGAAAAAAG-CTT
6490 TT-TTAAGAAACCAAAGCACCAATATCATG
127 TTCTTAAGAAACCAAAGCACCAATATCATG
* ** * * * * * ** * * *
6519 TATCCTAATGAGAAGACTAAGTTTGTGGTCCCTAATCGGGGAAAGAATGGGGA-AGAGTATGTGT
1 TATCCTAATGAGAAGAATGTGTTTATAGTGCCTAATC-AGAAAAGAATGAAGATA-AATATGAGA
*** * * * * * * * *
6583 ATTAATGTTTGTCTTATTTTTGAGAGG-CAAACTTTGA-TTCTATAAAAAATAGTGGAAAAAAAA
64 ATCCTTGTTTGGCTCA--TTT-A-AGGACGAACTTAGACTT-TACAAAAATTGGTGG-GAAAAAA
** * * * * *
6646 GCTTTTCTTGTGACACCAAAGCATCAATGTCTTT
123 GCTTTTCTTAAGAAACCAAAGCACCAATATCATG
* * * * * * ** *
6680 TATCCTAATGA-AGGGAATGTGTTTTTGGTTCCCAATCCTGAAAAGAATGGTGACT-ATTA-GAA
1 TATCCTAATGAGA-AGAATGTGTTTATAGTGCCTAAT-CAGAAAAGAATGAAGA-TAAATATG-A
** * * * * * * * * *
6742 GAATCAATGCTTGTCTTA-TTAAGAGAGGGACTTTGA-TTTA-AGGAAAATAGG-GCAGAGAAAA
62 GAATCCTTGTTTGGCTCATTTAAG-GACGAACTTAGACTTTACA--AAAATTGGTG-GGAAAAAA
* * * * * ** *
6803 GATTTCCACGTAA-AAA--AAATCATCAGCATCATT
123 GCTTT--TCTTAAGAAACCAAAGCACCAATATCATG
* * * * *** * *
6836 TCA-CCTAGTAAGGAGAATGTGTTTTTTAGTTTATAATCACAAAATGAATGAAGATAAAAACT-A
1 T-ATCCTAATGAGAAGAATGTG-TTTATAGTGCCTAATCAGAAAA-GAATGAAGATAAATA-TGA
* * * *
6899 GAATCCTTGTTTGGCTTA-TTAGTGGCATGAACTTAGACTTTAAAAAAATTGGTGGGAAAAAAGC
62 GAATCCTTGTTTGGCTCATTTA-AGG-ACGAACTTAGACTTTACAAAAATTGGTGGGAAAAAAGC
* * *
6963 CTTTCTTAAGAAACCAAAGCTCCAATATCGTG
125 TTTTCTTAAGAAACCAAAGCACCAATATCATG
* ** * * * ** * * * *
6995 TATCCTAATGAGAAGACTAAGTTTATGGTGCCTAATCGTGAAAAGAAAGGGGA-AGA-GTGTGTA
1 TATCCTAATGAGAAGAATGTGTTTATAGTGCCTAATC-AGAAAAGAATGAAGATAAATATGAGAA
* * * * * ** * * * * *
7058 TTCATGCTTGTCTTATTTGGGAGACAAACTTTGACTCTATCAAAAA-TGATGGAAAGAAAAGCTT
65 TCCTTGTTTGGCTCATTTAAG-GACGAACTTAGACTTTA-CAAAAATTGGTGGGAA-AAAAGCTT
** * * * *
7122 TTCTTGCGACACAAAAGCATCAATGTCATG
127 TTCTTAAGAAACCAAAGCACCAATATCATG
* * * * * *
7152 TATCCTAA-AAAACAGAATGTGTTT-TAGGTTCCCAATCCTA-AAAAGAATGGAGACT-ATTATG
1 TATCCTAATGAGA-AGAATGTGTTTATA-GTGCCTAAT-C-AGAAAAGAATGAAGA-TAAATATG
* *** * * * * * * *
7213 GGAATTGATGCTCGTCTTATTTAAGGGATGAACTTTGATTTTA-AGTAAAATATGGCAT-GG--A
61 AGAATCCTTGTTTGGCTCATTTAA-GGACGAACTTAGACTTTACA--AAAAT-TGG--TGGGAAA
* * * ** * * *
7274 AAAG-ATTTC-CACGCAAAAAAAATCATCAATATCATT
120 AAAGCTTTTCTTAAG-AAACCAAAGCACCAATATCATG
* * * *
7310 TATCCTAATGAGGAGAATGTGTTTATAGTGCATAATCACAAAATGAATGAAGATAAA-AAGTAGA
1 TATCCTAATGAGAAGAATGTGTTTATAGTGCCTAATCAGAAAA-GAATGAAGATAAATATG-AGA
* *
7374 ATCCTTGTTTAGCTCATTTGAGGTACGAACTTAGACTTTACAAAAATTGGTGGGTAAAAAAGCTT
64 ATCCTTGTTTGGCTCATTTAAGG-ACGAACTTAGACTTTACAAAAATTGGTGGG-AAAAAAGCTT
*
7439 TTCTTAAGAAAGCAAAGCACCAATATCATG
127 TTCTTAAGAAACCAAAGCACCAATATCATG
* * ** * * ** * * *
7469 TATCCTAAAGAGAAGACTAAGTTTATGGTGCCTAATCGTGAAAAGAATGGGGA-AGAGTATGTGT
1 TATCCTAATGAGAAGAATGTGTTTATAGTGCCTAATC-AGAAAAGAATGAAGATA-AATATGAGA
* * * * * * *
7533 ATTCGTGTTTGCCTTATTTAAGAGACAAACTTTGA-TTCTATCAAAAA-TGGT-AGAAAAAATGC
64 ATCCTTGTTTGGCTCATTTAAG-GACGAACTTAGACTT-TA-CAAAAATTGGTGGGAAAAAA-GC
** * * * *
7595 TTTTCTTGCGACACCAAAGCATCAATGTCTTG
125 TTTTCTTAAGAAACCAAAGCACCAATATCATG
* * * * * * *
7627 TATCCTAGTGA-AGGCAATGTGTTTTTGGTTCCTAATCCAGAAAAGAATGGAGACT-ATTATGAG
1 TATCCTAATGAGAAG-AATGTGTTTATAGTGCCTAAT-CAGAAAAGAATGAAGA-TAAATATGAG
** * * * * **
7690 AATCGATGTTTGTG-TCATTTAAGGGATGTACTTTGATTTTA-AGGAAAATAT-G-GCAAAGAAA
63 AATCCTTGTTTG-GCTCATTTAA-GGACGAACTTAGACTTTACA--AAAAT-TGGTGGGAA-AAA
* * * * * *
7751 AGATTTTCATGCAA-AAA--AAATCATCAACATCATT
122 AGCTTTTC-T-TAAGAAACCAAAGCACCAATATCATG
* * * *
7785 TATCCTAATGAGGAGAATGTGTTTATAGTGCTTAATTACAAAATGAATGAAGATAAATACT-AGA
1 TATCCTAATGAGAAGAATGTGTTTATAGTGCCTAATCAGAAAA-GAATGAAGATAAATA-TGAGA
* * *
7849 ATCCTTGTTTGGCTCAATTGAGGCACGAACTTAGACTTTACAAAAATTGGTGGGAAAAAAGCCTT
64 ATCCTTGTTTGGCTCATTTAAGG-ACGAACTTAGACTTTACAAAAATTGGTGGGAAAAAAGCTTT
7914 TCTTAAGAAACCAAAGCACCAATATCATG
128 TCTTAAGAAACCAAAGCACCAATATCATG
* * **
7943 TATCCTAGTGAGAAGACTAAGTTTATAGTGCCTAATCATGAAAAGAATG
1 TATCCTAATGAGAAGAATGTGTTTATAGTGCCTAATCA-GAAAAGAATG
7992 GGCAACAGCA
Statistics
Matches: 1389, Mismatches: 417, Indels: 288
0.66 0.20 0.14
Matches are distributed among these distances:
154 1 0.00
155 5 0.00
156 85 0.06
157 198 0.14
158 528 0.38
159 383 0.28
160 94 0.07
161 89 0.06
162 5 0.00
163 1 0.00
ACGTcount: A:0.37, C:0.13, G:0.20, T:0.30
Consensus pattern (156 bp):
TATCCTAATGAGAAGAATGTGTTTATAGTGCCTAATCAGAAAAGAATGAAGATAAATATGAGAAT
CCTTGTTTGGCTCATTTAAGGACGAACTTAGACTTTACAAAAATTGGTGGGAAAAAAGCTTTTCT
TAAGAAACCAAAGCACCAATATCATG
Found at i:9911 original size:42 final size:42
Alignment explanation
Indices: 9845--9967 Score: 183
Period size: 42 Copynumber: 2.9 Consensus size: 42
9835 TAGCCCTCAA
* * *
9845 AGAGAAAGAAGAGAGAGGAAGGATGATAGGAGGAGAGACAGG
1 AGAGATAGTAGAGAGAGGAGGGATGATAGGAGGAGAGACAGG
*
9887 AGAGATAGTAGAGATAGGAGGGATGATAGGAGGAGAGACAGG
1 AGAGATAGTAGAGAGAGGAGGGATGATAGGAGGAGAGACAGG
* *
9929 AGAGATAATAGAGAGAGGAGGGATGACAGGAGGAAGAGA
1 AGAGATAGTAGAGAGAGGAGGGATGATAGGAGG-AGAGA
9968 GAAGAAGATG
Statistics
Matches: 73, Mismatches: 7, Indels: 1
0.90 0.09 0.01
Matches are distributed among these distances:
42 68 0.93
43 5 0.07
ACGTcount: A:0.45, C:0.02, G:0.45, T:0.08
Consensus pattern (42 bp):
AGAGATAGTAGAGAGAGGAGGGATGATAGGAGGAGAGACAGG
Found at i:9930 original size:24 final size:24
Alignment explanation
Indices: 9854--9939 Score: 76
Period size: 24 Copynumber: 3.8 Consensus size: 24
9844 AAGAGAAAGA
* *
9854 AGAGAGAGGAAGGATGATAGGAGG
1 AGAGACAGGAGGGATGATAGGAGG
*
9878 AGAGACAGGA--GA-GAT---AGT
1 AGAGACAGGAGGGATGATAGGAGG
*
9896 AGAGATAGGAGGGATGATAGGAGG
1 AGAGACAGGAGGGATGATAGGAGG
* *
9920 AGAGACAGGAGAGATAATAG
1 AGAGACAGGAGGGATGATAG
9940 AGAGAGGAGG
Statistics
Matches: 49, Mismatches: 7, Indels: 12
0.72 0.10 0.18
Matches are distributed among these distances:
18 11 0.22
20 2 0.04
21 6 0.12
22 2 0.04
24 28 0.57
ACGTcount: A:0.43, C:0.02, G:0.44, T:0.10
Consensus pattern (24 bp):
AGAGACAGGAGGGATGATAGGAGG
Found at i:18092 original size:42 final size:42
Alignment explanation
Indices: 18031--18149 Score: 195
Period size: 42 Copynumber: 2.8 Consensus size: 42
18021 TAGCCCTCAA
*
18031 AGAGAAAGAAGAGAGAGGAGGGATGATAGGAGGAGAGACAGG
1 AGAGATAGAAGAGAGAGGAGGGATGATAGGAGGAGAGACAGG
* *
18073 AGAGATAGAAGAGATAGGAGGGATGATAAGAGGAGAGACAGG
1 AGAGATAGAAGAGAGAGGAGGGATGATAGGAGGAGAGACAGG
18115 AGAGATA-ATAGAGAGAGGAGGGATGATAGGAGGAG
1 AGAGATAGA-AGAGAGAGGAGGGATGATAGGAGGAG
18150 GAGAGAAGAA
Statistics
Matches: 71, Mismatches: 5, Indels: 2
0.91 0.06 0.03
Matches are distributed among these distances:
41 1 0.01
42 70 0.99
ACGTcount: A:0.45, C:0.02, G:0.45, T:0.08
Consensus pattern (42 bp):
AGAGATAGAAGAGAGAGGAGGGATGATAGGAGGAGAGACAGG
Found at i:18133 original size:18 final size:18
Alignment explanation
Indices: 18106--18155 Score: 57
Period size: 18 Copynumber: 2.8 Consensus size: 18
18096 TGATAAGAGG
*
18106 AGAGACAGGAGAGATAAT
1 AGAGAGAGGAGAGATAAT
* *
18124 AGAGAGAGGAGGGATGAT
1 AGAGAGAGGAGAGATAAT
18142 AG-GAGGAGGAGAGA
1 AGAGA-GAGGAGAGA
18156 AGAAGATGGA
Statistics
Matches: 27, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
17 2 0.07
18 25 0.93
ACGTcount: A:0.44, C:0.02, G:0.46, T:0.08
Consensus pattern (18 bp):
AGAGAGAGGAGAGATAAT
Found at i:28467 original size:471 final size:474
Alignment explanation
Indices: 27409--33277 Score: 6995
Period size: 471 Copynumber: 12.4 Consensus size: 474
27399 GTTTGGCTTA
* * *
27409 GGTGGGAAGAAAGCCTTTCTTAAGAAGCCAAAGCTCCAATATCGTGTATCCTAATGAGAAGACTA
1 GGTGGGAAAAAAGCCTTTCTTAAGAAACCAAAGCACCAATATCGTGTATCCTAATGAGAAGACTA
* * * *
27474 AGTTTATGGTGCCTAATCGTGAAAAGAATGAGGTAGAGTATGTGTATTCATGTTTGTCTTATTTA
66 AGTTTATGGTGCCTAATC-TGAAAAGAATGGGGAATAGTATGAGTATTCATGTTTGTCTTATTTA
* * * * *
27539 GGAGACAAACTTTGACTCTATCAAAAA-GATGGAAAGAAAAGTTTTTCTTGCGATACCAAAGCAT
130 AGAGACAAACTTTGATTCTATCAAAAACGGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCAT
** ** * * *
27603 CAATGTCATGTATCCTAAAAAATAGAATGT-TTTTTAAGTTCCCAATCCTGAAAAGAATAGAGAT
195 CAATGTCATGTATCCTAATGAAGGGAATGTGTTTTT-GGTTCCCAATCCTGAAAAGAATGGAGAC
* ** * *
27667 TATTACGAGAATCGATGCTTGTCTTATTTGAGGGATGAAC-TTGATTTTAAATAAAATATGGCAT
259 TATTACGAGAATCGATGCTTGTCTTATTTAAGGGATGAACTTTGATTTTAAGGAAAATAGGGCAA
* * *
27731 AGAAAATATTTCCACGCAAAAGAAAATCATCAATATCATATATCCTAATGAGGAGAATGTGTTTA
324 AGAAAAGATTTCCACGCAAAA-AAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTCA
* *
27796 TGGTGCGTAATCAC-AAATGAATGAAGATAAATACTAGAATCCTTG-TTGGCTCATTTGAGGCAC
388 TAGTGCCTAATCACAAAATGAATGAAGATAAATACTAGAATCCTTGTTTGGCTCATTTGAGGCAC
*
27859 AAACTTAGATTTTACAAAAATT
453 AAACTTAGACTTTACAAAAATT
* ** * *
27881 GGTGGGTAAAAAAGCCTTTCTTACGAAAGTAAAGCACCAATATCATGTATCCTAAAGAGAAGACT
1 GGTGGG-AAAAAAGCCTTTCTTAAGAAACCAAAGCACCAATATCGTGTATCCTAATGAGAAGACT
* * * * *
27946 AAGTTTATGGTGCCAAACCGTGAAAAGAATGGGGAAGAGTATGTGTATTCATGTTTGCCTTATTT
65 AAGTTTATGGTGCCTAATC-TGAAAAGAATGGGGAATAGTATGAGTATTCATGTTTGTCTTATTT
* * * *
28011 AAGAGGACAAACGTTGATTCTATCAAAAATGGTGGAAA-AAATGCTTTTCTTGTGACACCAAAGC
129 AAGA-GACAAACTTTGATTCTATCAAAAACGGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGC
* * **
28075 ATCAATGTCTTGTATCCTAGTGAAGGGAATGTGTTTTTGGTTCCCAATCCAAAAAAGAATGGAGA
193 ATCAATGTCATGTATCCTAATGAAGGGAATGTGTTTTTGGTTCCCAATCCTGAAAAGAATGGAGA
* * * * **
28140 CTATTATGAGAATCGA-GTTTGTGTTATTTAAGGGATGTACTTTGATTTTATTGAAAATA-GGCA
258 CTATTACGAGAATCGATGCTTGTCTTATTTAAGGGATGAACTTTGATTTTAAGGAAAATAGGGCA
* * *
28203 AAGAAAAGATTTTCATGCAAAAAAAATCATCAACATCATTTATCCTAATGA-GAGAATGTGCTT-
323 AAGAAAAGATTTCCACGCAAAAAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTG-TTC
** * * *
28266 GGAGTACCAAATCACAAAATGAATGAAGACT-AATACTAGAATCCTTGTTTGGTTCATTTGAGGC
387 ATAGTGCCTAATCACAAAATGAATGAAGA-TAAATACTAGAATCCTTGTTTGGCTCATTTGAGGC
*
28330 ACAAACTTAGATTTTAC-AAAATT
451 ACAAACTTAGACTTTACAAAAATT
* * * *
28353 GGTGAGAAAAGAGCCTTTCTTAATAAACCAAAGCACCAATATCGTGTATCCTAGTGAGAAGACTA
1 GGTGGGAAAAAAGCCTTTCTTAAGAAACCAAAGCACCAATATCGTGTATCCTAATGAGAAGACTA
* ** *
28418 AGTTTTTGGTGCCTAATCATGTAAAA-AATGGGGAATAGCGTGAGTATTCATGTTGGTCTTATTT
66 AGTTTATGGTGCCTAATC-TG-AAAAGAATGGGGAATAGTATGAGTATTCATGTTTGTCTTATTT
* * * * *
28482 AAGAGACGAGCTTTGATTCTATCAAAAACGATAGAAAGAAAAGCTTTTCTAGC-AGCACCAAAGC
129 AAGAGACAAACTTTGATTCTATCAAAAACGGTGGAAAGAAAAGCTTTTCTTGCGA-CACCAAAGC
* * * *
28546 ATCAATGTCAAGAATCCTAATGAAGGGATTGTGTTTTTGGTTCCTAATCCTGAAAAGAATGGAGA
193 ATCAATGTCATGTATCCTAATGAAGGGAATGTGTTTTTGGTTCCCAATCCTGAAAAGAATGGAGA
* *
28611 CTATTTTCGAGAATCGATGCTTGTCTTATTTAAGGGATGAACTTTTATTTTAAGGAAAATAGGGC
258 CTA-TTACGAGAATCGATGCTTGTCTTATTTAAGGGATGAACTTTGATTTTAAGGAAAATAGGGC
* * * *
28676 -AAG-AAAGA-TTCCACGCAAAAGAAATCATCAACATCATTTATCCTAACG-GAGAGAATATGTT
322 AAAGAAAAGATTTCCACGCAAAAAAAATCATCAATATCATTTATCCTAATGAG-GAGAATGTGTT
* * * *
28737 CATAGTGCCTAATCAC-ATATGAATGAAGGTCAATACTAGAATCCCTGTTTGGCTCATTTGAGGC
386 CATAGTGCCTAATCACAAAATGAATGAAGATAAATACTAGAATCCTTGTTTGGCTCATTTGAGGC
** * *
28801 ATGAACTTAGACTTGAAAAAAATT
451 ACAAACTTAGACTTTACAAAAATT
*** * * * * *
28825 GG-GAGG-GGGAAGTCTTTC-T-AGCAAAACCAAAGAATCAATATCGTGCATCCTTATGAGAAGA
1 GGTG-GGAAAAAAGCCTTTCTTAAG--AAACCAAAGCACCAATATCGTGTATCCTAATGAGAAGA
** * * * * *
28886 CTGCGTTGATGGTGCCTAATCTCGAAAAGAAT-AGGAATTAGTATGATTATTCATATTTGTCTCA
63 CTAAGTTTATGGTGCCTAATCT-GAAAAGAATGGGGAA-TAGTATGAGTATTCATGTTTGTCTTA
* * * * * * * * **
28950 TTTAAGATG-CAAACTTTTAGTCTAACGAAAATGGCGAAAAGAAAAGCCTTTCTTATGACACCAA
126 TTTAAGA-GACAAACTTTGATTCTATCAAAAACGGTGGAAAGAAAAGCTTTTCTTGCGACACCAA
* * ** * *
29014 AGCCTCAATATTGTGTATCCTAATGAAGTGAATGTGTTTTTGGTTCCCAATCCT-AAACA-AAAG
190 AGCATCAATGTCATGTATCCTAATGAAGGGAATGTGTTTTTGGTTCCCAATCCTGAAA-AGAATG
* * * *
29077 GAGACTATTAAGAGAATCGATGCTTGTCTTTTTTAAGGGAT-AAGCATT-AATTTAAGGAAAATA
254 GAGACTATTACGAGAATCGATGCTTGTCTTATTTAAGGGATGAA-CTTTGATTTTAAGGAAAATA
* * * *
29140 -GGAAAAGAATAG-TTTCCATGCAAAAGAAAATCA-CTAATATCATTTATCCTAATGAGCAGAAT
318 GGGCAAAGAAAAGATTTCCACGCAAAA-AAAATCATC-AATATCATTTATCCTAATGAGGAGAAT
* * * * *
29202 GTGTTCATAGTGCCTAATCAC-AAATGAATGAAGATTAACACTGGAATCCATGTTTGTCTCATTT
381 GTGTTCATAGTGCCTAATCACAAAATGAATGAAGATAAATACTAGAATCCTTGTTTGGCTCATTT
*
29266 GAGGCACAAACTTAGACATTACAAAAATT
446 GAGGCACAAACTTAGACTTTACAAAAATT
* * *
29295 GGTGAGAAAAAAGCATTTCTTAAGAATCCAAAGCACCAATATCGTGTATCCTAATGAGAAGACTA
1 GGTGGGAAAAAAGCCTTTCTTAAGAAACCAAAGCACCAATATCGTGTATCCTAATGAGAAGACTA
* * * *
29360 AGTTTATGATGCCTAATCATGAAAAGAATGGGGAAGAGTATGTGTATTCATGTCTGTTCTTATTT
66 AGTTTATGGTGCCTAATC-TGAAAAGAATGGGGAATAGTATGAGTATTCATGTTTG-TCTTATTT
* * * *
29425 AAGAGACAAACTTTGATTCTATCAAAAGCGGGGGTAGAAAGGAAAGCTTTTCTTGCAACACCAAA
129 AAGAGACAAACTTTGATTCTATCAAAAAC---GGTGGAAAGAAAAGCTTTTCTTGCGACACCAAA
* * * * *
29490 GCATCAATGTCAAGTATCCTAACGAAGGGAATGTGTTTTAGGATCCCAATCCTAAAAAGAATGGA
191 GCATCAATGTCATGTATCCTAATGAAGGGAATGTGTTTTTGGTTCCCAATCCTGAAAAGAATGGA
* * * * * *
29555 GATTGTTACGAGAATCGATCCTTTTCGTATTTAAGGGATGAACTTTGATTTTAAGTAAAATAGGG
256 GACTATTACGAGAATCGATGCTTGTCTTATTTAAGGGATGAACTTTGATTTTAAGGAAAATAGGG
* * * *
29620 CAAAAAAAAGATTTTCACGCAAAAGAAAATCATCAATATTATCTATCCTAATGAGGAGAATGTGT
321 CAAAGAAAAGATTTCCACGCAAAA-AAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGT
* * * * *
29685 TTATAGTGCGTAATCTCAAAATGAATGAAGATAAATACTAAAATCCTTGTTTGCCTCATTTGAGG
385 TCATAGTGCCTAATCACAAAATGAATGAAGATAAATACTAGAATCCTTGTTTGGCTCATTTGAGG
*
29750 CACCAAACTTAAAACTTTACAAAAATT
450 CA-CAAACTT-AGACTTTACAAAAATT
* * *
29777 GGTGGGAAAAAAGCCTTT-TTAAGAAACCATAGCACCAATATCGTGCATCCTAATGACAAGACTA
1 GGTGGGAAAAAAGCCTTTCTTAAGAAACCAAAGCACCAATATCGTGTATCCTAATGAGAAGACTA
* * * * * * *
29841 TGTTTGTAGTCCCTAATCCTGTAAAA-AATAGGGAAGAGTATGTGTATTCATGTTTGTCTTATTT
66 AGTTTATGGTGCCTAAT-CTG-AAAAGAATGGGGAATAGTATGAGTATTCATGTTTGTCTTATTT
* * * *
29905 AGGAGACAAACTTTGACTCTATCAAAAACGATGGAAAGAAAAGCTTTTCTTGCGATACCAAAGCA
129 AAGAGACAAACTTTGATTCTATCAAAAACGGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCA
* * ** *
29970 TCAATGTCATGTGTCCTAA--AAGATAGAATGTGTTTTAAGTT-CC-ATCATGAAAAGAATGGAG
194 TCAATGTCATGTATCCTAATGAAG--GGAATGTGTTTTTGGTTCCCAATCCTGAAAAGAATGGAG
* * *
30031 ACTATTACGAGAATCAATGCTTGTCTTATTTAAGGGATGAAC-TTGATTTTAA-GTAAATATGGC
257 ACTATTACGAGAATCGATGCTTGTCTTATTTAAGGGATGAACTTTGATTTTAAGGAAAATAGGGC
* * *
30094 ATAGAAAAGATTT-CACGCAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTT
322 AAAGAAAAGATTTCCACGCAAAAAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTC
** * *
30158 ACGGTGCATAATCACAAAATGAATGAAGATAAATAGTAGAATCCTTGTTTGGCTCATTTGAGGCA
387 ATAGTGCCTAATCACAAAATGAATGAAGATAAATACTAGAATCCTTGTTTGGCTCATTTGAGGCA
*
30223 CAGACTTAGACTTTAC-AAAATT
452 CAAACTTAGACTTTACAAAAATT
* * *
30245 GG-GGGTAAAAAAGCCTTTC-TAAGAAAGCAAAGCACCAATATCGTGTATCCTAAAGATAAGACT
1 GGTGGG-AAAAAAGCCTTTCTTAAGAAACCAAAGCACCAATATCGTGTATCCTAATGAGAAGACT
* * * *
30308 AAGTTTATGGTGCCTAATCGTGAAAAGAATGGGAAAGAGTATGTGTATTCATGTTTGCCTTATTT
65 AAGTTTATGGTGCCTAATC-TGAAAAGAATGGGGAATAGTATGAGTATTCATGTTTGTCTTATTT
*** * *
30373 AAGAGACAAACTTTGATTCTATCAAAAATTTTAG-AA-AAATGCTTTTCTTGCGACACCAAAGCA
129 AAGAGACAAACTTTGATTCTATCAAAAACGGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCA
* * * * **
30436 TCAATGTCTTGTATCCTAGTGAAGGGAATGTGCTTTTGGTTCCCAACCCAAAAAAGAATGGAGAC
194 TCAATGTCATGTATCCTAATGAAGGGAATGTGTTTTTGGTTCCCAATCCTGAAAAGAATGGAGAC
* * * * *
30501 TATTATGAGAATCGATGTTTGTGTTATTTAGGGGATGTACTTTTGA-TTTAAGGAAAATAGGGCA
259 TATTACGAGAATCGATGCTTGTCTTATTTAAGGGATGAAC-TTTGATTTTAAGGAAAATAGGGCA
* * * * *
30565 AAGAAAAGATTTTCATGCAAAAAAAAATTATCAACATCATTTAT-CTAATGAGGAGAATGGGTT-
323 AAGAAAAGATTTCCACGC-AAAAAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTC
** * * *
30628 GGAGTGCCGAATCACAAAATGAAAGAAGATTAATACTAGAATCCTTGTTTGGCTCATTTGAGGCA
387 ATAGTGCCTAATCACAAAATGAATGAAGATAAATACTAGAATCCTTGTTTGGCTCATTTGAGGCA
*
30693 CGAACTTAGACTTTACAAAAATT
452 CAAACTTAGACTTTACAAAAATT
* *
30716 GGTGGAAAAAAAGCCTTTCTTAAGAAACCAAAGCACCAATATCATGTATCCTAATGAGAAGACTA
1 GGTGGGAAAAAAGCCTTTCTTAAGAAACCAAAGCACCAATATCGTGTATCCTAATGAGAAGACTA
* *
30781 ACTTTATGGTGCCTAATCAT-AAAAGAATGGGGAATA-TACTGAGTA---GTGTTTGTCTTATTT
66 AGTTTATGGTGCCTAATC-TGAAAAGAATGGGGAATAGTA-TGAGTATTCATGTTTGTCTTATTT
*** * * *
30841 AAGAGGTGAACTTTGATTCTATC-AAAACGATGGAAAGAAAAGCTTTTATAGC-AGCACC-AAGC
129 AAGAGACAAACTTTGATTCTATCAAAAACGGTGGAAAGAAAAGCTTTTCTTGCGA-CACCAAAGC
* * * *
30903 ATCAATGTCAAGTATTCTAATGAAGGGAATGTGTTTTT-GTTCCCAATCTTGACAAGAATGGAGA
193 ATCAATGTCATGTATCCTAATGAAGGGAATGTGTTTTTGGTTCCCAATCCTGAAAAGAATGGAGA
**
30967 CTATTTTGAGAATCGATGCTTGTCTTATTTAAGGGATGAACTTTGATTTTAAGGAAAATAGGGCA
258 CTATTACGAGAATCGATGCTTGTCTTATTTAAGGGATGAACTTTGATTTTAAGGAAAATAGGGCA
* * * *
31032 AAG-AAAGATTTCCACGCAAAAGAAATCCTCAATATCATTTATCCTAACGAGGAGAATATGTTCA
323 AAGAAAAGATTTCCACGCAAAAAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTCA
*
31096 TAGTGCCTAATCACAAAATGAATGAAGATCAATACTAGAATCCTTGTTTGGCTCATTTGAGGCAC
388 TAGTGCCTAATCACAAAATGAATGAAGATAAATACTAGAATCCTTGTTTGGCTCATTTGAGGCAC
31161 AAACTTAGACTTTACAAAAATT
453 AAACTTAGACTTTACAAAAATT
* * * * * *
31183 GGTAAGGG--GAAAGCCTTTC-TAGCGAAACCAAAGAATCAATATCGTGCATCCTTATGAGAAGA
1 GGT--GGGAAAAAAGCCTTTCTTA-AGAAACCAAAGCACCAATATCGTGTATCCTAATGAGAAGA
* * *
31245 CTGCA-TTTATGGTGCCTAATCTCGAAAAGAAT-GGGAATTAGTATGACTATTCATATTTGTCTT
63 CT-AAGTTTATGGTGCCTAATCT-GAAAAGAATGGGGAA-TAGTATGAGTATTCATGTTTGTCTT
* * * *
31308 A-TTAAGAGGCAAACTTTGATTCTATCAAAAATGGTGAAAAGAAAAGCCTTTCTTGCGACACCAA
125 ATTTAAGAGACAAACTTTGATTCTATCAAAAACGGTGGAAAGAAAAGCTTTTCTTGCGACACCAA
* * *
31372 AGCATCACTGTCATGTATCCTAATGAA-GGAATGTGTTTTTGGTTCCAAATCCTGAAAAG-ACGG
190 AGCATCAATGTCATGTATCCTAATGAAGGGAATGTGTTTTTGGTTCCCAATCCTGAAAAGAATGG
* *
31435 AGACTATTACGAGAATCGATGCTAGTCTTATTTAAGGGATGAACTTTTATTTTAAGGAAAATAGG
255 AGACTATTACGAGAATCGATGCTTGTCTTATTTAAGGGATGAACTTTGATTTTAAGGAAAATAGG
* * * * *
31500 GCAAAGAAAAGATTTCCGCGCAAAAGAAATCCTCAATATCATTTATCCTAACGAGGAGAATATGT
320 GCAAAGAAAAGATTTCCACGCAAAAAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGT
*
31565 TCATAGTGCCTAATCACAAAATGAATGAAGATCAATACTAGAATCCTTGTTTGGCTCATTTGAGG
385 TCATAGTGCCTAATCACAAAATGAATGAAGATAAATACTAGAATCCTTGTTTGGCTCATTTGAGG
31630 CACAAACTTAGACTTTACAAAAATT
450 CACAAACTTAGACTTTACAAAAATT
* * * * * * * *
31655 GGCAGGG--GAAAGCCTTTC-TAGCGAATCCAAAGAATCAATATCGTGCATCCTTATGAGAAGAC
1 GG-TGGGAAAAAAGCCTTTCTTA-AGAAACCAAAGCACCAATATCGTGTATCCTAATGAGAAGAC
* * *
31717 TGCA-TTTATGGTGCCTAATCTTGAAAAGAAT-GGGAATTAGTATGACTATTCATATTTGTCTTA
64 T-AAGTTTATGGTGCCTAATC-TGAAAAGAATGGGGAA-TAGTATGAGTATTCATGTTTGTCTTA
* * *
31780 -TTAAGAGGCAAACTTTGATTCTATCAAAAACGGTGAAAAGAAAAGCCTTTCTTGCGACACCAAA
126 TTTAAGAGACAAACTTTGATTCTATCAAAAACGGTGGAAAGAAAAGCTTTTCTTGCGACACCAAA
* * *
31844 GTATCACTGTCATGTATCCTAATGAAGGGAATGTGTTTTTGGTTCCCAATCCTGAAAAGAACGGA
191 GCATCAATGTCATGTATCCTAATGAAGGGAATGTGTTTTTGGTTCCCAATCCTGAAAAGAATGGA
* * *
31909 GACTATTACAAGAATCGATGCTAGTCTTATTTAAGGGATGAACTTTTATTTTAAGGAAAATAGGG
256 GACTATTACGAGAATCGATGCTTGTCTTATTTAAGGGATGAACTTTGATTTTAAGGAAAATAGGG
* * * * *
31974 CCAAAGAAAAGATTTTCGCGCAAAAGAAAATCCTCAATATCATTTATCCTAACGAGGAGAATATG
321 -CAAAGAAAAGATTTCCACGCAAAA-AAAATCATCAATATCATTTATCCTAATGAGGAGAATGTG
*
32039 TTCATAGTGCCT-ATCACAAAATGAATGAAGATCAATACTAGAATCCTTGTTTGGCTCATTTGAG
384 TTCATAGTGCCTAATCACAAAATGAATGAAGATAAATACTAGAATCCTTGTTTGGCTCATTTGAG
32103 GCACAAACTTAGACTTTAC-AAAATT
449 GCACAAACTTAGACTTTACAAAAATT
* ** * * * * * **
32128 GGCAGGG-GGAAAGCCTTTC-TAGCGAAACTAAAGAATCAATATCGTGCATCCTTTTGAGAAGAC
1 GG-TGGGAAAAAAGCCTTTCTTA-AGAAACCAAAGCACCAATATCGTGTATCCTAATGAGAAGAC
* * *
32191 TGCA-TTTATGGTGCCTAATCTCGAAAAGAAT-GGGAATTAGTATGACTATTCATATTTGTCTTA
64 T-AAGTTTATGGTGCCTAATCT-GAAAAGAATGGGGAA-TAGTATGAGTATTCATGTTTGTCTTA
* * * *
32254 TTTAAGAGGCAAACTTTGATTCTATCAAAAATGGTGAAAAG-AAAGCCTTTCTTGCGACACCAAA
126 TTTAAGAGACAAACTTTGATTCTATCAAAAACGGTGGAAAGAAAAGCTTTTCTTGCGACACCAAA
* *
32318 GCATCACTGTCATGTATCCTAATGAAGGGAATGTGTTTTTGG-TCCCAATCCTGAAAAGAACGGA
191 GCATCAATGTCATGTATCCTAATGAAGGGAATGTGTTTTTGGTTCCCAATCCTGAAAAGAATGGA
* * *
32382 GACTATTACGAGAATCAATG-TTAGTCTTATTTAAGGGATGAACTTTTATTTTAAGGAAAATATG
256 GACTATTACGAGAATCGATGCTT-GTCTTATTTAAGGGATGAACTTTGATTTTAAGGAAAATAGG
* ** * * * * *
32446 TCAAAGAAAAGATTTCCACGCAAAGGAAAT-ATCAATATTATTTATCCTAACGATGAGAGTTTGT
320 GCAAAGAAAAGATTTCCACGCAAAAAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGT
* * * * *
32510 TCATAGTGCCCGAATCACAAAATTAATGAAGATTAATACTAGAATCCTTGTTTGTCTCATTTAAG
385 TCATAGTG-CCTAATCACAAAATGAATGAAGATAAATACTAGAATCCTTGTTTGGCTCATTTGAG
32575 GCACAAACTTAGACTTTACAAAAATT
449 GCACAAACTTAGACTTTACAAAAATT
** * * * * * *
32601 GGTAGGG-GGAAAGCTTTTC-T-AGCAAAACCAAAGAATCAATATTGTGCATCCTTATGAGAAGA
1 GGT-GGGAAAAAAGCCTTTCTTAAG--AAACCAAAGCACCAATATCGTGTATCCTAATGAGAAGA
*** * * * * *
32663 CGGCGCTTATGGTGCCTTAATCTCAAAAAGAAT-GGGAATTAGTATGACTGTTCATATTTGTCTT
63 CTAAGTTTATGGTGCC-TAATCT-GAAAAGAATGGGGAA-TAGTATGAGTATTCATGTTTGTCTT
* * * * *
32727 ATTTAAGAGCCAAACTTTGATTCTATCAAAAATGGTGAAAAGAAAAGCCTTTCTTGCGACAACAA
125 ATTTAAGAGACAAACTTTGATTCTATCAAAAACGGTGGAAAGAAAAGCTTTTCTTGCGACACCAA
* * *
32792 AGCATCACTGTCGTGTATCCTAATGAAGGGAATGTGTTTTTGGTTCCCAATCCTGAAAGGAATGG
190 AGCATCAATGTCATGTATCCTAATGAAGGGAATGTGTTTTTGGTTCCCAATCCTGAAAAGAATGG
* * * *
32857 AGACTATTACAAGAATCGATGCTAT-TGTTATTTAAGGGATGAACTTTTAGTTTAAGGAAAATAG
255 AGACTATTACGAGAATCGATGCT-TGTCTTATTTAAGGGATGAACTTTGATTTTAAGGAAAATAG
* *
32921 GGCAGAGAAAAGATTTCCACGCAAAATAAAATCATCAATATCA-TTAACCTAATGAGGAGAATGT
319 GGCAAAGAAAAGATTTCCACGCAAAA-AAAATCATCAATATCATTTATCCTAATGAGGAGAATGT
* * * *
32985 GTTTATAGTGCGTAATCTCAAAGTGAATGAAGATAAATACTAGAATCCTTGTTTGGCTCATTTGA
383 GTTCATAGTGCCTAATCACAAAATGAATGAAGATAAATACTAGAATCCTTGTTTGGCTCATTTGA
*
33050 GGCACGAACTTAGACTTTACAAAAATT
448 GGCACAAACTTAGACTTTACAAAAATT
* * * *
33077 GGTGGGAAAAAAGCCTTTCTTAAGAAACCAAAGCCCCAATATCATGTATCCTAAGGTGAAGACTA
1 GGTGGGAAAAAAGCCTTTCTTAAGAAACCAAAGCACCAATATCGTGTATCCTAATGAGAAGACTA
* *
33142 AGTTTATGGTGCCTAATCATGAAAATAAGGGGGAATAGTATGAGTATTCATGTTTGTCTTATTTA
66 AGTTTATGGTGCCTAATC-TGAAAAGAATGGGGAATAGTATGAGTATTCATGTTTGTCTTATTTA
** * *
33207 AGAGATGAACTTTGATTCTATCAAAAACAGTGGAAAGAAAAGCTTTTCTTGTGACACCAAAGCAT
130 AGAGACAAACTTTGATTCTATCAAAAACGGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCAT
33272 CAATGT
195 CAATGT
33278 TGTAGACACT
Statistics
Matches: 4709, Mismatches: 559, Indels: 255
0.85 0.10 0.05
Matches are distributed among these distances:
465 21 0.00
466 90 0.02
467 250 0.05
468 299 0.06
469 83 0.02
470 327 0.07
471 1046 0.22
472 561 0.12
473 481 0.10
474 492 0.10
475 391 0.08
476 274 0.06
477 108 0.02
478 21 0.00
479 61 0.01
480 78 0.02
481 91 0.02
482 35 0.01
ACGTcount: A:0.36, C:0.15, G:0.19, T:0.30
Consensus pattern (474 bp):
GGTGGGAAAAAAGCCTTTCTTAAGAAACCAAAGCACCAATATCGTGTATCCTAATGAGAAGACTA
AGTTTATGGTGCCTAATCTGAAAAGAATGGGGAATAGTATGAGTATTCATGTTTGTCTTATTTAA
GAGACAAACTTTGATTCTATCAAAAACGGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATC
AATGTCATGTATCCTAATGAAGGGAATGTGTTTTTGGTTCCCAATCCTGAAAAGAATGGAGACTA
TTACGAGAATCGATGCTTGTCTTATTTAAGGGATGAACTTTGATTTTAAGGAAAATAGGGCAAAG
AAAAGATTTCCACGCAAAAAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTCATAG
TGCCTAATCACAAAATGAATGAAGATAAATACTAGAATCCTTGTTTGGCTCATTTGAGGCACAAA
CTTAGACTTTACAAAAATT
Found at i:31359 original size:158 final size:156
Alignment explanation
Indices: 30724--32817 Score: 557
Period size: 158 Copynumber: 13.3 Consensus size: 156
30714 TTGGTGGAAA
* * * *
30724 AAAAGCCTTTCTTA-AGAAACCAAAGCACCAATATCATGTATCCTAATGAGAAGACT-AACTTTA
1 AAAAGCCTTTC-TAGCGAAACCAAAGCATCAATATCATGTATCCTAATGAGAAGAATGCA-TTTA
* *
30787 TGGTGCCTAATCAT--AAAAGAATGGG-GAATA-TACTG-AGT-AGTGTTTGTCTTATTTAAGAG
64 TGGTGCCTAATC-TCGAAAAGAATGGGAGATTAGTA-TGAATTCA-TGTTTGTCTTA-TTAAGAG
**
30846 GTGAACTTTGATTCTATCAAAACGAT-GG-AAAG
125 GCAAACTTTGATTCTATCAAAA--ATGGGAAAAG
* * * * * * * **
30878 AAAAGCTTTTATAGC-AGCACC-AAGCATCAATGTCAAGTATTCTAATGA-AGGGAATGTGTTT-
1 AAAAGCCTTTCTAGCGA-AACCAAAGCATCAATATCATGTATCCTAATGAGA-AGAATGCATTTA
* * * * * * * * * *
30939 TTGTTCCCAATCTTGACAAGAAT-GGAGACTATTTTGAGAATCGATGCTTGTCTTATTTAAG-GG
64 TGGTGCCTAATCTCGAAAAGAATGGGAGATTAGTATGA-ATTC-ATGTTTGTCTTA-TTAAGAGG
* *** *
31002 -ATGAACTTTGATTTTAAGGAAAATAGGGCAAAG
126 CA--AACTTTGATTCTATCAAAAAT-GGGAAAAG
* * ** * * * * *
31035 -AAAG-ATTTCCA-CGCAAAAGAAATCCTCAATATCATTTATCCTAACGAGGAGAAT--ATGTTC
1 AAAAGCCTTTCTAGCG-AAACCAAAGCATCAATATCATGTATCCTAATGAGAAGAATGCAT-TT-
* * * * * * * * * *
31095 ATAGTGCCTAATCAC-AAAATGAAT-GAAGATCAATACTAGAATCCTTGTTTGGCTCATT-TGAG
63 ATGGTGCCTAATCTCGAAAA-GAATGGGAGATTAGTA-T-GAATTCATGTTTGTCTTATTAAGAG
* * **
31157 GCACAAACTTAGACTT-TA-CAAAAATTGGTAAGGG
125 G--CAAACTTTGA-TTCTATCAAAAA-TGGGAAAAG
* * * * * *
31191 GAAAGCCTTTCTAGCGAAACCAAAGAATCAATATCGTGCATCCTTATGAGAAGACTGCATTTATG
1 AAAAGCCTTTCTAGCGAAACCAAAGCATCAATATCATGTATCCTAATGAGAAGAATGCATTTATG
*
31256 GTGCCTAATCTCGAAAAGAATGGGA-ATTAGTATGACTATTCATATTTGTCTTATTAAGAGGCAA
66 GTGCCTAATCTCGAAAAGAATGGGAGATTAGTATGA--ATTCATGTTTGTCTTATTAAGAGGCAA
31320 ACTTTGATTCTATCAAAAATGGTGAAAAG
129 ACTTTGATTCTATCAAAAATGG-GAAAAG
* * * * * ** *
31349 AAAAGCCTTTCTTGCGACACCAAAGCATCACTGTCATGTATCCTAATGA-AGGAATGTGTTTTTG
1 AAAAGCCTTTCTAGCGAAACCAAAGCATCAATATCATGTATCCTAATGAGAAGAATGCATTTATG
* * * * * * * * *
31413 GTTCCAAATC-CTGAAAAG-A-CGGAGACTATTACGAGAATCGATGCTAGTCTTATTTAAG-GG-
66 GTGCCTAATCTC-GAAAAGAATGGGAGATTAGTATGA-ATTC-ATGTTTGTCTTA-TTAAGAGGC
* * *** *
31473 ATGAACTTTTATTTTAAGGAAAATAGGGCAAAG
127 A--AACTTTGATTCTATCAAAAAT-GGGAAAAG
* * ** * * * * *
31506 AAAAG-ATTTC-CGCGCAAAAGAAATCCTCAATATCATTTATCCTAACGAGGAGAAT--ATGTTC
1 AAAAGCCTTTCTAGCG-AAACCAAAGCATCAATATCATGTATCCTAATGAGAAGAATGCAT-TT-
* * * * * * * * * *
31567 ATAGTGCCTAATCAC-AAAATGAAT-GAAGATCAATACTAGAATCCTTGTTTGGCTCATT-TGAG
63 ATGGTGCCTAATCTCGAAAA-GAATGGGAGATTAGTA-T-GAATTCATGTTTGTCTTATTAAGAG
* * * **
31629 GCACAAACTTAGACTT-TA-CAAAAATTGGCAGGG
125 G--CAAACTTTGA-TTCTATCAAAAATGGGAAAAG
* * * * * * *
31662 GAAAGCCTTTCTAGCGAATCCAAAGAATCAATATCGTGCATCCTTATGAGAAGACTGCATTTATG
1 AAAAGCCTTTCTAGCGAAACCAAAGCATCAATATCATGTATCCTAATGAGAAGAATGCATTTATG
* *
31727 GTGCCTAATCTTGAAAAGAATGGGA-ATTAGTATGACTATTCATATTTGTCTTATTAAGAGGCAA
66 GTGCCTAATCTCGAAAAGAATGGGAGATTAGTATGA--ATTCATGTTTGTCTTATTAAGAGGCAA
*
31791 ACTTTGATTCTATCAAAAACGGTGAAAAG
129 ACTTTGATTCTATCAAAAATGG-GAAAAG
* * * * * * ** *
31820 AAAAGCCTTTCTTGCGACACCAAAGTATCACTGTCATGTATCCTAATGA-AGGGAATGTGTTTTT
1 AAAAGCCTTTCTAGCGAAACCAAAGCATCAATATCATGTATCCTAATGAGA-AGAATGCATTTAT
* * * * * * * *
31884 GGTTCCCAATC-CTGAAAAGAACGGAGACTATTA-CAAGAA-TCGATGCTAGTCTTATTTAAG-G
65 GGTGCCTAATCTC-GAAAAGAATGG-GA-GATTAGTATGAATTC-ATGTTTGTCTTA-TTAAGAG
* * *** *
31945 G-ATGAACTTTTATTTTAAGGAAAATAGGGCCAAAG
125 GCA--AACTTTGATTCTATCAAAAAT-GGG-AAAAG
** ** * ** * * * * *
31980 AAAAGATTTTCGCGCAAAAGAAAATCCTCAATATCATTTATCCTAACGAGGAGAAT--ATGTTCA
1 AAAAGCCTTTCTAGCGAAACCAAAGCATCAATATCATGTATCCTAATGAGAAGAATGCAT-TT-A
* * * * * * * * * *
32043 TAGTGCCT-ATCAC-AAAATGAAT-GAAGATCAATACTAGAATCCTTGTTTGGCTCATT-TGAGG
64 TGGTGCCTAATCTCGAAAA-GAATGGGAGATTAGTA-T-GAATTCATGTTTGTCTTATTAAGAGG
* * * ***
32104 CACAAACTTAGACTT-TA-CAAAATTGGCAGGGG
126 --CAAACTTTGA-TTCTATCAAAAATGGGAAAAG
* * * * * ** *
32136 GAAAGCCTTTCTAGCGAAACTAAAGAATCAATATCGTGCATCCTTTTGAGAAGACTGCATTTATG
1 AAAAGCCTTTCTAGCGAAACCAAAGCATCAATATCATGTATCCTAATGAGAAGAATGCATTTATG
*
32201 GTGCCTAATCTCGAAAAGAATGGGA-ATTAGTATGACTATTCATATTTGTCTTATTTAAGAGGCA
66 GTGCCTAATCTCGAAAAGAATGGGAGATTAGTATGA--ATTCATGTTTGTCTTA-TTAAGAGGCA
32265 AACTTTGATTCTATCAAAAATGGTGAAAAG
128 AACTTTGATTCTATCAAAAATGG-GAAAAG
* * * * * ** *
32295 -AAAGCCTTTCTTGCGACACCAAAGCATCACTGTCATGTATCCTAATGA-AGGGAATGTGTTTTT
1 AAAAGCCTTTCTAGCGAAACCAAAGCATCAATATCATGTATCCTAATGAGA-AGAATGCATTTAT
* * * * * * *
32358 GGT-CCCAATC-CTGAAAAGAA-CGGAGACTATTACGAGAATCAATGTTAGTCTTATTTAAG-GG
65 GGTGCCTAATCTC-GAAAAGAATGGGAGATTAGTATGA-ATTC-ATGTTTGTCTTA-TTAAGAGG
* * ** **
32419 -ATGAACTTTTATTTTAAGGAAAATAT-GTCAAAG
126 CA--AACTTTGATTCT-ATCAAAA-ATGGGAAAAG
* * ** * * * * ** *
32452 AAAAG-ATTTCCA-CGCAAAGGAAA-TATCAATATTATTTATCCTAACGATGAGAGTTTG--TTC
1 AAAAGCCTTTCTAGCG-AAACCAAAGCATCAATATCATGTATCCTAATGA-GA-AGAATGCATTT
* * * * * * * * *
32512 ATAGTGCCCGAATCAC-AAAATTAAT-GAAGATTAATACTAGAATCCTTGTTTGTCTCATTTAAG
63 ATGGTG-CCTAATCTCGAAAA-GAATGGGAGATTAGTA-T-GAATTCATGTTTGTCTTA-TTAAG
* * * ***
32575 -GCACAAACTTAGACTT-TA-CAAAAATTGGTAGGGG
123 AG-GCAAACTTTGA-TTCTATCAAAAA-TGGGAAAAG
* * * * ** * * ** **
32609 GAAAGCTTTTCTAGCAAAACCAAAGAATCAATATTGTGCATCCTTATGAGAAGACGGCGCTTATG
1 AAAAGCCTTTCTAGCGAAACCAAAGCATCAATATCATGTATCCTAATGAGAAGAATGCATTTATG
* * * *
32674 GTGCCTTAATCTCAAAAAGAATGGGA-ATTAGTATGACTGTTCATATTTGTCTTATTTAAGAGCC
66 GTGCC-TAATCTCGAAAAGAATGGGAGATTAGTATGA--ATTCATGTTTGTCTTA-TTAAGAGGC
32738 AAACTTTGATTCTATCAAAAATGGTGAAAAG
127 AAACTTTGATTCTATCAAAAATGG-GAAAAG
* * * *
32769 AAAAGCCTTTCTTGCGACAA-CAAAGCATCACTGTCGTGTATCCTAATGA
1 AAAAGCCTTTCTAGCGA-AACCAAAGCATCAATATCATGTATCCTAATGA
32818 AGGGAATGTG
Statistics
Matches: 1363, Mismatches: 421, Indels: 306
0.65 0.20 0.15
Matches are distributed among these distances:
151 1 0.00
152 12 0.01
153 45 0.03
154 17 0.01
155 31 0.02
156 248 0.18
157 335 0.25
158 397 0.29
159 155 0.11
160 115 0.08
161 7 0.01
ACGTcount: A:0.36, C:0.16, G:0.19, T:0.30
Consensus pattern (156 bp):
AAAAGCCTTTCTAGCGAAACCAAAGCATCAATATCATGTATCCTAATGAGAAGAATGCATTTATG
GTGCCTAATCTCGAAAAGAATGGGAGATTAGTATGAATTCATGTTTGTCTTATTAAGAGGCAAAC
TTTGATTCTATCAAAAATGGGAAAAG
Found at i:33548 original size:13 final size:13
Alignment explanation
Indices: 33530--33554 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
33520 CATAAAGTGT
33530 TGTATCGATACAA
1 TGTATCGATACAA
33543 TGTATCGATACA
1 TGTATCGATACA
33555 TATTTTTTTG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.36, C:0.16, G:0.16, T:0.32
Consensus pattern (13 bp):
TGTATCGATACAA
Found at i:33553 original size:33 final size:33
Alignment explanation
Indices: 33510--33576 Score: 89
Period size: 33 Copynumber: 2.0 Consensus size: 33
33500 TTCAATGATT
*
33510 TGTATTGATACATAAAGTGTTGTATCGATACAA
1 TGTATCGATACATAAAGTGTTGTATCGATACAA
*** *
33543 TGTATCGATACATATTTTTTTGTATCGATACAA
1 TGTATCGATACATAAAGTGTTGTATCGATACAA
33576 T
1 T
33577 TTAAGCTACT
Statistics
Matches: 29, Mismatches: 5, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
33 29 1.00
ACGTcount: A:0.33, C:0.10, G:0.15, T:0.42
Consensus pattern (33 bp):
TGTATCGATACATAAAGTGTTGTATCGATACAA
Found at i:33679 original size:52 final size:52
Alignment explanation
Indices: 33637--33745 Score: 175
Period size: 52 Copynumber: 2.1 Consensus size: 52
33627 CATTGATCTT
*
33637 TGTATCGATACATGCATGCAAATTTGCCCAGATGTATCGATACATTATAAAA
1 TGTATCGATACATGCAGGCAAATTTGCCCAGATGTATCGATACATTATAAAA
* * *
33689 TGTATCGATACATGCAGGCAAATTTTCCCAGATGTATCGATACACTAT-TAA
1 TGTATCGATACATGCAGGCAAATTTGCCCAGATGTATCGATACATTATAAAA
33740 TGTATC
1 TGTATC
33746 ATGTATCGAT
Statistics
Matches: 53, Mismatches: 4, Indels: 1
0.91 0.07 0.02
Matches are distributed among these distances:
51 8 0.15
52 45 0.85
ACGTcount: A:0.34, C:0.18, G:0.16, T:0.32
Consensus pattern (52 bp):
TGTATCGATACATGCAGGCAAATTTGCCCAGATGTATCGATACATTATAAAA
Done.