Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold1086
Parameters: 2 7 7 80 10 50 1000
Length:  51957

Tables:   1   

This is table  1  of  1  ( 34 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
2980--3025
21
2.2
20
81
11
58
32
19
4
43
1.71
5409--5434
13
2.0
13
100
0
52
38
15
15
30
1.88
9799--9853
22
2.6
21
77
5
56
3
20
1
74
1.06
9811--9852
11
3.8
11
84
6
50
0
21
0
78
0.75
11176--11394
32
7.0
31
79
9
191
18
15
36
28
1.92
11208--11350
64
2.2
64
97
0
268
13
16
39
31
1.87
11341--13691
27
85.9
28
81
6
667
29
15
30
24
1.95
11362--11663
28
10.6
28
77
8
137
25
16
28
29
1.97
11360--11581
117
1.9
116
84
6
297
26
16
27
30
1.97
11639--13704
27
76.0
27
84
2
2316
30
15
30
23
1.95
11639--13704
109
19.0
108
85
2
2384
30
15
30
23
1.95
15014--15076
20
3.3
18
79
16
65
9
9
6
74
1.21
15014--15063
20
2.5
20
87
6
66
10
8
8
74
1.24
17586--17652
33
2.0
33
88
0
98
34
11
13
40
1.81
17606--17630
13
1.9
13
100
0
50
36
16
16
32
1.90
17693--17717
13
1.9
13
100
0
50
32
16
16
36
1.90
17726--17849
52
2.4
51
92
6
207
33
18
17
29
1.94
25294--25349
22
2.5
22
82
5
60
1
19
0
78
0.84
25307--25351
11
4.1
11
91
0
72
0
17
0
82
0.68
27213--27261
20
2.4
21
86
3
64
40
8
24
26
1.83
30489--30550
3
20.7
3
74
23
51
0
29
4
66
1.12
30494--30550
22
2.8
20
84
10
62
0
28
5
66
1.13
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
32810--32863
20
2.7
20
91
0
81
29
14
18
37
1.91
35079--35121
21
2.1
20
83
12
52
53
6
13
25
1.65
35079--35121
20
2.1
21
83
12
54
53
6
13
25
1.65
37401--37466
33
2.0
34
88
8
100
33
16
13
36
1.88
40042--40083
13
3.2
13
79
0
57
38
11
14
35
1.83
45571--45627
13
3.9
13
72
24
51
35
15
17
31
1.92
45553--45648
32
3.0
32
93
1
165
35
13
16
34
1.88
45553--45646
19
5.6
18
68
28
73
35
13
17
34
1.89
45689--45713
13
1.9
13
100
0
50
32
16
16
36
1.90
45702--45850
52
2.9
51
87
7
219
34
19
16
28
1.94
49903--49951
13
4.2
13
75
24
63
36
18
12
32
1.88
49903--49972
33
2.1
34
89
7
108
34
20
12
32
1.90

Tables:   1

The End!