genome.fa.s1088.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold1088
Parameters: 2 7 7 80 10 50 1000
Length:  88335

Tables:   1   

This is table  1  of  1  ( 78 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
8--55	19	2.5	19	76	6	53	43	0	2	54	1.12
748--791	21	2.1	22	87	8	65	59	0	0	40	0.98
2487--2529	15	2.8	16	82	10	54	65	0	0	34	0.93
2449--2520	26	2.7	27	79	14	78	58	0	0	41	0.98
2480--2545	15	4.8	14	70	20	50	59	0	0	40	0.98
2476--2553	28	2.9	27	74	17	74	60	1	0	38	1.05
3464--3505	20	2.0	21	95	4	77	33	14	11	40	1.82
8025--8220	105	1.9	106	91	1	322	40	13	10	35	1.80
8669--8693	6	4.2	6	100	0	50	0	16	16	68	1.22
9932--9966	2	17.5	2	100	0	70	48	0	0	51	1.00
9964--9988	4	6.2	4	100	0	50	24	0	24	52	1.48
10186--10222	2	18.5	2	88	0	56	54	0	0	45	1.00
10186--10221	10	3.6	10	96	0	63	55	0	0	44	0.99
10758--10782	2	12.5	2	100	0	50	48	0	0	52	1.00
13862--14819	157	6.1	153	75	8	612	38	20	15	25	1.92
14173--14868	155	4.5	149	75	10	437	38	20	15	25	1.92
13966--14938	156	6.2	156	72	11	385	38	19	16	25	1.92
16041--16094	19	2.7	21	82	5	76	40	12	14	31	1.84
20912--21001	19	5.1	18	71	22	75	35	12	15	36	1.85
20958--20982	13	1.9	13	100	0	50	36	16	16	32	1.90
20937--21009	32	2.3	32	97	0	137	34	12	17	35	1.88
21053--21078	13	2.0	13	100	0	52	30	15	15	38	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
21033--21099	34	2.0	33	91	2	107	25	16	13	44	1.84
23438--23560	51	2.4	52	86	8	171	32	25	11	30	1.91
23438--23560	53	2.4	51	86	8	169	32	25	11	30	1.91
23544--23618	27	2.7	28	89	6	109	24	33	20	22	1.97
23571--23745	79	2.2	79	82	4	210	26	26	14	32	1.95
23704--23847	51	2.8	51	83	6	168	30	26	11	31	1.91
23905--23957	27	2.0	27	88	0	79	24	33	16	24	1.96
23938--24122	79	2.4	76	82	9	212	28	24	12	34	1.93
24041--24159	51	2.3	51	85	2	150	30	26	10	32	1.90
36366--36486	52	2.3	52	97	0	224	29	19	16	34	1.93
36358--36506	52	2.9	52	84	6	194	32	16	16	34	1.91
36562--36659	19	5.8	18	71	28	90	36	17	11	34	1.85
36557--36657	32	3.1	32	94	1	166	35	17	10	35	1.85
36581--36605	13	1.9	13	100	0	50	32	16	16	36	1.90
36861--36896	18	2.0	18	94	0	63	27	30	11	30	1.91
38012--38045	7	4.7	7	85	7	50	88	11	0	0	0.52
38009--38045	11	3.4	11	92	0	65	89	10	0	0	0.49
38009--38045	15	2.5	14	87	12	56	89	10	0	0	0.49
39077--39180	37	2.8	37	95	0	190	26	14	14	44	1.84
39546--39870	28	11.3	29	80	7	360	32	28	16	22	1.95
39892--39973	43	1.9	43	85	5	112	30	21	17	30	1.96
44253--44295	18	2.3	18	84	11	52	20	9	9	60	1.55
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46149--46197	8	6.0	8	95	4	89	12	0	12	75	1.05
46306--46375	34	2.1	34	100	0	140	30	14	17	38	1.89
46903--46954	19	2.6	21	84	6	72	38	15	13	32	1.86
46989--47053	21	3.1	21	84	6	71	33	15	12	38	1.85
47128--47203	38	2.0	38	100	0	152	21	21	7	50	1.74
49446--49710	75	3.5	75	82	4	300	26	22	12	38	1.90
55591--55720	52	2.6	50	87	4	172	43	11	15	29	1.82
55591--55720	50	2.5	52	85	7	176	43	11	15	29	1.82
55770--55813	21	2.1	21	95	4	81	31	15	9	43	1.79
57711--57754	18	2.4	19	88	3	63	52	0	0	47	1.00
58392--58431	20	2.1	20	86	9	57	45	0	2	52	1.14
58443--58479	13	2.8	14	88	8	51	67	0	0	32	0.91
58450--58496	18	2.6	18	80	12	60	70	2	0	27	0.99
58536--58596	24	2.6	23	82	12	70	39	3	0	57	1.15
58705--58754	15	3.6	15	69	20	54	54	0	0	46	1.00
58689--58764	26	2.8	27	94	6	136	56	1	0	42	1.07
59265--59318	23	2.3	23	75	6	56	46	0	1	51	1.11
63500--63531	13	2.4	14	94	5	57	18	9	21	50	1.75
63486--63523	20	1.9	20	88	0	58	21	7	23	47	1.77
69665--70327	49	14.2	49	72	14	332	32	17	25	24	1.97
69675--69947	148	1.8	146	84	5	370	33	16	25	24	1.96
69868--70110	87	2.8	87	82	7	303	31	19	22	26	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
70091--70327	92	2.6	92	90	2	363	32	18	25	23	1.97
70336--70641	29	10.7	29	81	8	326	19	16	32	31	1.94
70336--70632	86	3.4	85	84	7	359	19	16	31	31	1.94
72069--72135	19	3.7	18	82	7	73	2	0	14	82	0.79
72081--72132	10	5.2	10	81	9	70	1	0	13	84	0.70
72081--72131	5	10.4	5	77	10	52	1	0	13	84	0.71
72069--72131	9	6.6	9	77	13	63	3	0	14	82	0.79
72078--72132	13	4.2	13	84	13	69	1	0	14	83	0.73
72069--72135	27	2.4	27	83	13	84	2	0	14	82	0.79
72078--72135	14	4.3	13	82	6	71	1	0	15	82	0.74
87962--88109	52	2.9	51	86	5	217	31	17	18	33	1.94
88098--88122	13	1.9	13	100	0	50	36	16	16	32	1.90

Tables:   1

The End!