genome.fa.s1089.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold1089
Parameters: 2 7 7 80 10 50 1000
Length:  79684

Tables:   1   

This is table  1  of  1  ( 39 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1293--1422	9	14.2	9	78	13	115	0	5	9	85	0.74
1292--1423	70	1.9	68	85	13	180	0	6	9	84	0.79
1293--1422	1	130.0	1	75	0	89	0	5	9	85	0.74
1293--1449	74	2.2	71	80	14	171	0	5	10	83	0.80
12804--12863	24	2.5	24	83	5	68	61	5	5	28	1.38
16943--17004	26	2.4	26	75	0	70	38	8	12	40	1.73
17708--17737	6	5.0	6	95	0	51	0	63	3	33	1.11
19920--19945	13	2.0	13	100	0	52	92	0	7	0	0.39
22029--22093	18	3.6	18	81	6	78	49	4	7	38	1.52
23310--23348	18	2.2	18	95	0	69	25	28	12	33	1.93
24907--24974	18	3.8	17	76	19	75	51	2	0	45	1.16
25919--25952	2	17.5	2	93	6	61	0	50	0	50	1.00
27114--27152	3	13.0	3	100	0	78	66	0	0	33	0.92
32138--32168	2	15.5	2	100	0	62	0	48	0	51	1.00
43052--43094	21	2.0	21	86	8	61	39	16	9	34	1.80
43132--43202	20	3.6	19	77	7	70	40	16	12	29	1.86
43172--43305	53	2.5	53	93	1	232	37	17	17	27	1.92
43332--43362	10	3.1	10	90	0	53	22	29	6	41	1.78
43350--43405	21	2.6	22	94	5	105	26	25	10	37	1.88
43495--43520	13	2.0	13	100	0	52	30	15	23	30	1.95
46566--46675	29	3.8	30	75	12	104	36	14	20	29	1.92
46723--46764	14	2.9	14	85	3	57	33	21	19	26	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47578--47604	14	1.9	14	100	0	54	81	0	18	0	0.69
48733--48791	29	2.0	29	83	6	75	20	0	18	61	1.35
49046--49127	37	2.2	37	86	4	112	25	20	19	34	1.96
49095--49194	37	2.7	37	76	0	110	33	18	13	36	1.89
50139--50379	132	1.8	133	82	7	310	35	13	24	26	1.92
52415--52479	15	4.5	14	73	7	58	38	13	21	26	1.91
52415--52479	29	2.2	29	78	5	69	38	13	21	26	1.91
63169--63217	21	2.3	21	82	6	55	38	12	4	44	1.61
70253--70306	19	2.8	18	77	20	63	35	14	16	33	1.90
70282--70399	28	4.1	28	91	8	200	35	11	17	35	1.85
70282--70399	60	2.0	58	93	6	204	35	11	17	35	1.85
70350--70407	13	4.0	13	74	23	53	34	15	17	32	1.91
70275--70406	28	4.4	32	91	7	199	34	12	18	34	1.89
70338--70393	19	3.3	19	72	27	70	35	12	17	33	1.88
70445--70472	13	2.2	13	100	0	56	35	14	10	39	1.81
75626--75842	34	6.4	33	81	9	258	40	26	7	25	1.82
75626--75842	102	2.1	101	88	1	335	40	26	7	25	1.82

Tables:   1

The End!