Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Scaffold109
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 1855911
ACGTcount: A:0.34, C:0.14, G:0.15, T:0.34
Warning! 69956 characters in sequence are not A, C, G, or T
File 3 of 13
Found at i:270062 original size:22 final size:24
Alignment explanation
Indices: 270017--270074 Score: 68
Period size: 22 Copynumber: 2.5 Consensus size: 24
270007 ATATTATTAA
*
270017 TTAATTAATAAAAAATTATTTAAA-T
1 TTAATT-AT-AAAAATTATATAAATT
270042 TTAATTATAAAAA-TATATAAATT
1 TTAATTATAAAAATTATATAAATT
270065 TTAA-TATAAA
1 TTAATTATAAA
270075 TGATATTTTA
Statistics
Matches: 31, Mismatches: 1, Indels: 5
0.84 0.03 0.14
Matches are distributed among these distances:
22 13 0.42
23 10 0.32
24 2 0.06
25 6 0.19
ACGTcount: A:0.57, C:0.00, G:0.00, T:0.43
Consensus pattern (24 bp):
TTAATTATAAAAATTATATAAATT
Found at i:270080 original size:23 final size:22
Alignment explanation
Indices: 270021--270093 Score: 69
Period size: 23 Copynumber: 3.3 Consensus size: 22
270011 TATTAATTAA
*
270021 TTAATA-AAAAATTATTTAAA-T
1 TTAATATAAAAA-TATATAAATT
270042 TTAATTATAAAAATATATAAATT
1 TTAA-TATAAAAATATATAAATT
* * *
270065 TTAATATAAATGATATTTTAATT
1 TTAATATAAA-AATATATAAATT
270088 TTAATA
1 TTAATA
270094 AATTTTAAAT
Statistics
Matches: 44, Mismatches: 4, Indels: 6
0.81 0.07 0.11
Matches are distributed among these distances:
21 4 0.09
22 15 0.34
23 25 0.57
ACGTcount: A:0.52, C:0.00, G:0.01, T:0.47
Consensus pattern (22 bp):
TTAATATAAAAATATATAAATT
Found at i:270553 original size:14 final size:14
Alignment explanation
Indices: 270532--270572 Score: 50
Period size: 14 Copynumber: 3.1 Consensus size: 14
270522 ATTTTTTAAT
270532 TAAA-TAAAAATAA
1 TAAATTAAAAATAA
*
270545 TATATTAAAAATAA
1 TAAATTAAAAATAA
*
270559 AAAATT-AAAATAA
1 TAAATTAAAAATAA
270572 T
1 T
270573 TAATAATTTT
Statistics
Matches: 23, Mismatches: 4, Indels: 2
0.79 0.14 0.07
Matches are distributed among these distances:
13 10 0.43
14 13 0.57
ACGTcount: A:0.71, C:0.00, G:0.00, T:0.29
Consensus pattern (14 bp):
TAAATTAAAAATAA
Found at i:270659 original size:21 final size:21
Alignment explanation
Indices: 270635--270693 Score: 57
Period size: 21 Copynumber: 2.7 Consensus size: 21
270625 TTTTTATGTC
*
270635 ATTTTTATTTTTATTATATTT
1 ATTTTTATTTTTATTATAATT
* *
270656 A-TTTTATATTATATTTTAATT
1 ATTTTTAT-TTTTATTATAATT
270677 ATTTTTTATTTTATATT
1 A-TTTTTATTTT-TATT
270694 TAAATCGTGT
Statistics
Matches: 30, Mismatches: 4, Indels: 6
0.75 0.10 0.15
Matches are distributed among these distances:
20 6 0.20
21 12 0.40
22 2 0.07
23 10 0.33
ACGTcount: A:0.27, C:0.00, G:0.00, T:0.73
Consensus pattern (21 bp):
ATTTTTATTTTTATTATAATT
Found at i:270667 original size:16 final size:15
Alignment explanation
Indices: 270623--270671 Score: 62
Period size: 16 Copynumber: 3.1 Consensus size: 15
270613 AATATAATCA
*
270623 TATTTTTATGTCATTTT
1 TATTTTTAT-T-ATATT
270640 TATTTTTATTATATT
1 TATTTTTATTATATT
270655 TATTTTATATTATATT
1 TATTTT-TATTATATT
270671 T
1 T
270672 TAATTATTTT
Statistics
Matches: 30, Mismatches: 1, Indels: 3
0.88 0.03 0.09
Matches are distributed among these distances:
15 10 0.33
16 11 0.37
17 9 0.30
ACGTcount: A:0.24, C:0.02, G:0.02, T:0.71
Consensus pattern (15 bp):
TATTTTTATTATATT
Found at i:270678 original size:16 final size:17
Alignment explanation
Indices: 270637--270693 Score: 57
Period size: 16 Copynumber: 3.5 Consensus size: 17
270627 TTTATGTCAT
*
270637 TTTTAT-TTTTATTATA
1 TTTTATATTATATTATA
*
270653 -TTTATTTTATATTATA
1 TTTTATATTATATTATA
* *
270669 TTTTA-ATTATTTTTTA
1 TTTTATATTATATTATA
270685 TTTTATATT
1 TTTTATATT
270694 TAAATCGTGT
Statistics
Matches: 34, Mismatches: 4, Indels: 5
0.79 0.09 0.12
Matches are distributed among these distances:
15 5 0.15
16 22 0.65
17 7 0.21
ACGTcount: A:0.26, C:0.00, G:0.00, T:0.74
Consensus pattern (17 bp):
TTTTATATTATATTATA
Found at i:270695 original size:11 final size:11
Alignment explanation
Indices: 270635--270687 Score: 51
Period size: 11 Copynumber: 5.0 Consensus size: 11
270625 TTTTTATGTC
270635 ATTTT-TATTT
1 ATTTTATATTT
270645 -TTATTATATTT
1 ATT-TTATATTT
270656 ATTTTATATTAT
1 ATTTTATATT-T
270668 ATTTTA-A-TT
1 ATTTTATATTT
*
270677 ATTTTTTATTT
1 ATTTTATATTT
270688 TATATTTAAA
Statistics
Matches: 36, Mismatches: 1, Indels: 11
0.75 0.02 0.23
Matches are distributed among these distances:
9 8 0.22
10 4 0.11
11 15 0.42
12 9 0.25
ACGTcount: A:0.26, C:0.00, G:0.00, T:0.74
Consensus pattern (11 bp):
ATTTTATATTT
Found at i:273086 original size:18 final size:17
Alignment explanation
Indices: 273063--273106 Score: 56
Period size: 16 Copynumber: 2.6 Consensus size: 17
273053 ATACTAATTA
273063 AAAATAATTTTGATAAAT
1 AAAATAATTTTGA-AAAT
*
273081 AAAAT-ATTTTTAAAAT
1 AAAATAATTTTGAAAAT
273097 AAAA-AATTTT
1 AAAATAATTTT
273107 ATTATATTTA
Statistics
Matches: 24, Mismatches: 1, Indels: 4
0.83 0.03 0.14
Matches are distributed among these distances:
16 13 0.54
17 6 0.25
18 5 0.21
ACGTcount: A:0.57, C:0.00, G:0.02, T:0.41
Consensus pattern (17 bp):
AAAATAATTTTGAAAAT
Found at i:273791 original size:22 final size:22
Alignment explanation
Indices: 273765--273806 Score: 68
Period size: 22 Copynumber: 1.9 Consensus size: 22
273755 TATTTTTATT
273765 TAAAT-TTAATTATAAAAATATA
1 TAAATATTAA-TATAAAAATATA
273787 TAAATATTAATATAAAAATA
1 TAAATATTAATATAAAAATA
273807 ATTTTTTAAT
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
22 15 0.79
23 4 0.21
ACGTcount: A:0.62, C:0.00, G:0.00, T:0.38
Consensus pattern (22 bp):
TAAATATTAATATAAAAATATA
Found at i:274712 original size:3 final size:3
Alignment explanation
Indices: 274704--274735 Score: 64
Period size: 3 Copynumber: 10.7 Consensus size: 3
274694 TCTCTAGTCC
274704 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TA
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TA
274736 AGTTTTAACA
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 29 1.00
ACGTcount: A:0.34, C:0.00, G:0.00, T:0.66
Consensus pattern (3 bp):
TAT
Found at i:275001 original size:15 final size:15
Alignment explanation
Indices: 274981--275012 Score: 64
Period size: 15 Copynumber: 2.1 Consensus size: 15
274971 ATTTATTTAT
274981 ATAATTATTTTTAAA
1 ATAATTATTTTTAAA
274996 ATAATTATTTTTAAA
1 ATAATTATTTTTAAA
275011 AT
1 AT
275013 GTAACATTTA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (15 bp):
ATAATTATTTTTAAA
Found at i:276426 original size:3 final size:3
Alignment explanation
Indices: 276418--276464 Score: 78
Period size: 3 Copynumber: 15.7 Consensus size: 3
276408 TTATCAAACA
276418 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAAT AA- AAT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT -AAT AAT AAT
276463 AA
1 AA
276465 AAGCATGCTT
Statistics
Matches: 42, Mismatches: 0, Indels: 4
0.91 0.00 0.09
Matches are distributed among these distances:
2 2 0.05
3 37 0.88
4 3 0.07
ACGTcount: A:0.70, C:0.00, G:0.00, T:0.30
Consensus pattern (3 bp):
AAT
Found at i:276669 original size:20 final size:23
Alignment explanation
Indices: 276624--276671 Score: 66
Period size: 23 Copynumber: 2.2 Consensus size: 23
276614 AATTTAATTA
*
276624 TAAATATTAATATAATATTATCT
1 TAAATAATAATATAATATTATCT
276647 TAAATAATAATAT-ATATT-T-T
1 TAAATAATAATATAATATTATCT
276667 TAAAT
1 TAAAT
276672 CAATTTAATT
Statistics
Matches: 24, Mismatches: 1, Indels: 3
0.86 0.04 0.11
Matches are distributed among these distances:
20 6 0.25
21 1 0.04
22 5 0.21
23 12 0.50
ACGTcount: A:0.50, C:0.02, G:0.00, T:0.48
Consensus pattern (23 bp):
TAAATAATAATATAATATTATCT
Found at i:282159 original size:2 final size:2
Alignment explanation
Indices: 282154--282203 Score: 100
Period size: 2 Copynumber: 25.0 Consensus size: 2
282144 ATATACACAC
282154 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG
1 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG
282196 AG AG AG AG
1 AG AG AG AG
282204 TAATATCCAA
Statistics
Matches: 48, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 48 1.00
ACGTcount: A:0.50, C:0.00, G:0.50, T:0.00
Consensus pattern (2 bp):
AG
Found at i:282340 original size:3 final size:3
Alignment explanation
Indices: 282332--282378 Score: 85
Period size: 3 Copynumber: 15.7 Consensus size: 3
282322 AGCAAAACCC
*
282332 TAT TAT TAT TTT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TA
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TA
282379 ATCTTTAAAT
Statistics
Matches: 42, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
3 42 1.00
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (3 bp):
TAT
Found at i:293298 original size:2 final size:2
Alignment explanation
Indices: 293285--293319 Score: 61
Period size: 2 Copynumber: 17.5 Consensus size: 2
293275 GCCATTCTTT
*
293285 TA TA TA TT TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
293320 TTCTTTTAAA
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
2 31 1.00
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (2 bp):
TA
Found at i:301423 original size:38 final size:38
Alignment explanation
Indices: 301318--301425 Score: 153
Period size: 38 Copynumber: 2.8 Consensus size: 38
301308 CCCAGCCGCT
* *
301318 AACCACCGGCCAATTCCAAATTGAATTCTCTAGTTGCC
1 AACCACCGGCCAATTCCAAATTGAATTCTTTAGTCGCC
** *
301356 AACCATTGGCCAATTCCAAATTGAATTCTTTAGTCGTC
1 AACCACCGGCCAATTCCAAATTGAATTCTTTAGTCGCC
* *
301394 AGCCACCAGCCAATTCCAAATTGAATTCTTTA
1 AACCACCGGCCAATTCCAAATTGAATTCTTTA
301426 ACCGTCAGTT
Statistics
Matches: 61, Mismatches: 9, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
38 61 1.00
ACGTcount: A:0.31, C:0.28, G:0.12, T:0.30
Consensus pattern (38 bp):
AACCACCGGCCAATTCCAAATTGAATTCTTTAGTCGCC
Found at i:301432 original size:38 final size:38
Alignment explanation
Indices: 301364--301474 Score: 123
Period size: 38 Copynumber: 2.9 Consensus size: 38
301354 CCAACCATTG
**
301364 GCCAATTCCAAATTGAATTCTTTAGTCGTCAGCCACCA
1 GCCAATTCCAAATTGAATTCTTTAACCGTCAGCCACCA
****
301402 GCCAATTCCAAATTGAATTCTTTAACCGTCAGTTGTCA
1 GCCAATTCCAAATTGAATTCTTTAACCGTCAGCCACCA
* * * * *
301440 ACCAATTTCAAATTAAATTCTCTAACCATCAGCCA
1 GCCAATTCCAAATTGAATTCTTTAACCGTCAGCCA
301475 ATTCAATTTG
Statistics
Matches: 59, Mismatches: 14, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
38 59 1.00
ACGTcount: A:0.32, C:0.27, G:0.10, T:0.31
Consensus pattern (38 bp):
GCCAATTCCAAATTGAATTCTTTAACCGTCAGCCACCA
Found at i:306103 original size:38 final size:38
Alignment explanation
Indices: 306014--306161 Score: 127
Period size: 38 Copynumber: 3.9 Consensus size: 38
306004 CACCAGTTGC
* * * * *
306014 CAGCCACCAGTTAATTCTAAATTGAATTCTCTAGTTGT
1 CAGCCACCAATCAATTCTAAATTAAATTCTCTAATTAT
*** * *
306052 CAGCCATTGATCAATTCTAAATTGAATTCTCTATTTAT
1 CAGCCACCAATCAATTCTAAATTAAATTCTCTAATTAT
* *
306090 CAGCCACCAATCAATT-TCAAATTAAATTTTCTAACTAT
1 CAGCCACCAATCAATTCT-AAATTAAATTCTCTAATTAT
** * * *
306128 CAATCATCAATCAATTTTAAATTAAATTTTCTAA
1 CAGCCACCAATCAATTCTAAATTAAATTCTCTAA
306162 CCGTTAATCG
Statistics
Matches: 91, Mismatches: 17, Indels: 4
0.81 0.15 0.04
Matches are distributed among these distances:
37 1 0.01
38 89 0.98
39 1 0.01
ACGTcount: A:0.36, C:0.20, G:0.06, T:0.39
Consensus pattern (38 bp):
CAGCCACCAATCAATTCTAAATTAAATTCTCTAATTAT
Found at i:307299 original size:18 final size:19
Alignment explanation
Indices: 307276--307316 Score: 66
Period size: 19 Copynumber: 2.2 Consensus size: 19
307266 AATCAACTTA
307276 AAATAATAT-TTTTTAATT
1 AAATAATATATTTTTAATT
*
307294 AAATAATATATTTTTATTT
1 AAATAATATATTTTTAATT
307313 AAAT
1 AAAT
307317 TTAATTATAA
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
18 9 0.43
19 12 0.57
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (19 bp):
AAATAATATATTTTTAATT
Found at i:309482 original size:20 final size:22
Alignment explanation
Indices: 309457--309497 Score: 59
Period size: 22 Copynumber: 2.0 Consensus size: 22
309447 GTTAAGATTT
309457 ATTT-AAT-TAATGTTTTAAGA
1 ATTTAAATATAATGTTTTAAGA
*
309477 ATTTAAATATAATTTTTTAAG
1 ATTTAAATATAATGTTTTAAG
309498 GTTTGGTTAA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
20 4 0.22
21 3 0.17
22 11 0.61
ACGTcount: A:0.41, C:0.00, G:0.07, T:0.51
Consensus pattern (22 bp):
ATTTAAATATAATGTTTTAAGA
Found at i:309796 original size:2 final size:2
Alignment explanation
Indices: 309752--309776 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
309742 TTCAACCTTC
309752 AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT A
309777 CACACACACA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:311930 original size:19 final size:20
Alignment explanation
Indices: 311908--311955 Score: 62
Period size: 19 Copynumber: 2.5 Consensus size: 20
311898 TTTATTACTC
* *
311908 AATTTAATTTTTTTTTA-AA
1 AATTTAAATTTATTTTATAA
*
311927 AATTTAAATTTATTTTATGA
1 AATTTAAATTTATTTTATAA
311947 AATTTAAAT
1 AATTTAAAT
311956 CTTGAAATGA
Statistics
Matches: 25, Mismatches: 3, Indels: 1
0.86 0.10 0.03
Matches are distributed among these distances:
19 15 0.60
20 10 0.40
ACGTcount: A:0.42, C:0.00, G:0.02, T:0.56
Consensus pattern (20 bp):
AATTTAAATTTATTTTATAA
Found at i:314321 original size:14 final size:14
Alignment explanation
Indices: 314302--314331 Score: 60
Period size: 14 Copynumber: 2.1 Consensus size: 14
314292 CTTTTCATTC
314302 TTTCAAATATACCT
1 TTTCAAATATACCT
314316 TTTCAAATATACCT
1 TTTCAAATATACCT
314330 TT
1 TT
314332 AAAAAAACTA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 16 1.00
ACGTcount: A:0.33, C:0.20, G:0.00, T:0.47
Consensus pattern (14 bp):
TTTCAAATATACCT
Found at i:314515 original size:22 final size:22
Alignment explanation
Indices: 314473--314513 Score: 59
Period size: 22 Copynumber: 1.9 Consensus size: 22
314463 AAAATAAAAA
314473 ATATTTTTACATTAATATTTAT
1 ATATTTTTACATTAATATTTAT
314495 ATATTTTATA-ATTAA-ATTT
1 ATATTTT-TACATTAATATTT
314514 TAATAACAAA
Statistics
Matches: 18, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
21 4 0.22
22 12 0.67
23 2 0.11
ACGTcount: A:0.39, C:0.02, G:0.00, T:0.59
Consensus pattern (22 bp):
ATATTTTTACATTAATATTTAT
Found at i:320909 original size:15 final size:16
Alignment explanation
Indices: 320882--320911 Score: 53
Period size: 15 Copynumber: 1.9 Consensus size: 16
320872 AATCGCTTTG
320882 ATTATTAAATAGTAAT
1 ATTATTAAATAGTAAT
320898 ATTATT-AATAGTAA
1 ATTATTAAATAGTAA
320912 AACAGATAGT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 8 0.57
16 6 0.43
ACGTcount: A:0.50, C:0.00, G:0.07, T:0.43
Consensus pattern (16 bp):
ATTATTAAATAGTAAT
Found at i:321742 original size:16 final size:16
Alignment explanation
Indices: 321708--321750 Score: 52
Period size: 16 Copynumber: 2.8 Consensus size: 16
321698 TTATTTCGGT
* *
321708 TTCAAA-TACTTCAAT
1 TTCAAATTATTTCAAG
*
321723 TTCAAGTTATTTCAAG
1 TTCAAATTATTTCAAG
321739 TTCAAATTATTT
1 TTCAAATTATTT
321751 TAATTTTAAG
Statistics
Matches: 23, Mismatches: 4, Indels: 1
0.82 0.14 0.04
Matches are distributed among these distances:
15 5 0.22
16 18 0.78
ACGTcount: A:0.35, C:0.14, G:0.05, T:0.47
Consensus pattern (16 bp):
TTCAAATTATTTCAAG
Found at i:321799 original size:16 final size:16
Alignment explanation
Indices: 321747--321799 Score: 70
Period size: 16 Copynumber: 3.2 Consensus size: 16
321737 AGTTCAAATT
321747 ATTTTAATTTTAAGATA
1 ATTTTAATTTTAAG-TA
* * *
321764 ATTTTAAATTTAGGTT
1 ATTTTAATTTTAAGTA
321780 ATTTTAATTTTAAGTA
1 ATTTTAATTTTAAGTA
321796 ATTT
1 ATTT
321800 CAGATTCGGG
Statistics
Matches: 30, Mismatches: 6, Indels: 1
0.81 0.16 0.03
Matches are distributed among these distances:
16 18 0.60
17 12 0.40
ACGTcount: A:0.36, C:0.00, G:0.08, T:0.57
Consensus pattern (16 bp):
ATTTTAATTTTAAGTA
Found at i:322390 original size:24 final size:23
Alignment explanation
Indices: 322355--322408 Score: 74
Period size: 24 Copynumber: 2.3 Consensus size: 23
322345 AATATAATAC
*
322355 ATATATTTAATATCTTATATTA-
1 ATATATTTAATATATTATATTAT
322377 ATCATATTTAAATATATTATATTAT
1 AT-ATATTT-AATATATTATATTAT
322402 ATATATT
1 ATATATT
322409 ATTTTTTTAT
Statistics
Matches: 28, Mismatches: 1, Indels: 4
0.85 0.03 0.12
Matches are distributed among these distances:
22 2 0.07
23 6 0.21
24 18 0.64
25 2 0.07
ACGTcount: A:0.43, C:0.04, G:0.00, T:0.54
Consensus pattern (23 bp):
ATATATTTAATATATTATATTAT
Found at i:322722 original size:3 final size:3
Alignment explanation
Indices: 322714--322745 Score: 64
Period size: 3 Copynumber: 10.7 Consensus size: 3
322704 ATTGGAATTT
322714 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA AT
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA AT
322746 TTGTAAATTG
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 29 1.00
ACGTcount: A:0.66, C:0.00, G:0.00, T:0.34
Consensus pattern (3 bp):
ATA
Found at i:322881 original size:14 final size:14
Alignment explanation
Indices: 322862--322890 Score: 58
Period size: 14 Copynumber: 2.1 Consensus size: 14
322852 TTCTAGTAAT
322862 ATTCAAACATAGTG
1 ATTCAAACATAGTG
322876 ATTCAAACATAGTG
1 ATTCAAACATAGTG
322890 A
1 A
322891 GCTGTGTCTC
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.45, C:0.14, G:0.14, T:0.28
Consensus pattern (14 bp):
ATTCAAACATAGTG
Found at i:323766 original size:75 final size:75
Alignment explanation
Indices: 323643--323878 Score: 375
Period size: 75 Copynumber: 3.1 Consensus size: 75
323633 ATGATAATAT
* *
323643 GAGATAATCTGCACGATAATTACAATCAACAAATGTTTC-AGCATATTTCACAGTACTACTATCA
1 GAGATAATCTGCACGATAACTACAATCAACAAATGTTTCTA-CATATTTCACATTACTACTATCA
323707 ATAACTAATCC
65 ATAACTAATCC
* * * * *
323718 GAGATAATCTGCGCGATAACTACAATCAACAAATGTTTTTTCATATTTCATATTGCTACTATCAA
1 GAGATAATCTGCACGATAACTACAATCAACAAATGTTTCTACATATTTCACATTACTACTATCAA
*
323783 TAACTAATCT
66 TAACTAATCC
323793 GAGATAATCTGCACGATAACTACAATCAACAAATGTTTCTACATATTTCACATTACTACTATCAA
1 GAGATAATCTGCACGATAACTACAATCAACAAATGTTTCTACATATTTCACATTACTACTATCAA
*
323858 CAACTAATCC
66 TAACTAATCC
323868 GAGATAATCTG
1 GAGATAATCTG
323879 TATATTTCAC
Statistics
Matches: 145, Mismatches: 15, Indels: 2
0.90 0.09 0.01
Matches are distributed among these distances:
75 145 1.00
ACGTcount: A:0.39, C:0.21, G:0.09, T:0.31
Consensus pattern (75 bp):
GAGATAATCTGCACGATAACTACAATCAACAAATGTTTCTACATATTTCACATTACTACTATCAA
TAACTAATCC
Found at i:324221 original size:27 final size:27
Alignment explanation
Indices: 324181--324237 Score: 78
Period size: 27 Copynumber: 2.1 Consensus size: 27
324171 GGGTCGTGGC
** *
324181 AGGATATGTTGGGTATGGAGGTTAAGT
1 AGGATATGACGGGTATGGAGATTAAGT
*
324208 AGGATATGACGGGTATGGAGATTGAGT
1 AGGATATGACGGGTATGGAGATTAAGT
324235 AGG
1 AGG
324238 GAAATATGGT
Statistics
Matches: 26, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
27 26 1.00
ACGTcount: A:0.28, C:0.02, G:0.42, T:0.28
Consensus pattern (27 bp):
AGGATATGACGGGTATGGAGATTAAGT
Found at i:325377 original size:17 final size:17
Alignment explanation
Indices: 325333--325383 Score: 50
Period size: 16 Copynumber: 3.0 Consensus size: 17
325323 GTTAAACATG
* *
325333 TAAAATAATTAAAAAAA
1 TAAAATTATTAATAAAA
* *
325350 TAACA-TATTAATAACA
1 TAAAATTATTAATAAAA
325366 TAAAATTATTAATTAAAA
1 TAAAATTATTAA-TAAAA
325384 AAGGTATTCA
Statistics
Matches: 26, Mismatches: 6, Indels: 3
0.74 0.17 0.09
Matches are distributed among these distances:
16 12 0.46
17 10 0.38
18 4 0.15
ACGTcount: A:0.65, C:0.04, G:0.00, T:0.31
Consensus pattern (17 bp):
TAAAATTATTAATAAAA
Found at i:326182 original size:102 final size:102
Alignment explanation
Indices: 326006--326209 Score: 399
Period size: 102 Copynumber: 2.0 Consensus size: 102
325996 TCAATGCACC
*
326006 GATTAAGCTATGATCTACTGTGCAGTAGTCGATATGAACGATGTTCACAAATCCACATGCATGTA
1 GATTAAGCTATGATCTACTGTGCAGTAGCCGATATGAACGATGTTCACAAATCCACATGCATGTA
326071 AATATGGAATAAGTTGCTCAGGTGGATCGACATGTCT
66 AATATGGAATAAGTTGCTCAGGTGGATCGACATGTCT
326108 GATTAAGCTATGATCTACTGTGCAGTAGCCGATATGAACGATGTTCACAAATCCACATGCATGTA
1 GATTAAGCTATGATCTACTGTGCAGTAGCCGATATGAACGATGTTCACAAATCCACATGCATGTA
326173 AATATGGAATAAGTTGCTCAGGTGGATCGACATGTCT
66 AATATGGAATAAGTTGCTCAGGTGGATCGACATGTCT
326210 AAACTTCTTT
Statistics
Matches: 101, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
102 101 1.00
ACGTcount: A:0.31, C:0.17, G:0.23, T:0.29
Consensus pattern (102 bp):
GATTAAGCTATGATCTACTGTGCAGTAGCCGATATGAACGATGTTCACAAATCCACATGCATGTA
AATATGGAATAAGTTGCTCAGGTGGATCGACATGTCT
Found at i:329579 original size:22 final size:21
Alignment explanation
Indices: 329554--329604 Score: 59
Period size: 22 Copynumber: 2.3 Consensus size: 21
329544 AGGATTACTT
*
329554 TTAAATTAGGTTTGTTTAA-AGA
1 TTAAATTA--TTTATTTAATAGA
329576 TTAAATTATTTATTTAATTAGA
1 TTAAATTATTTATTTAA-TAGA
329598 TTAAATT
1 TTAAATT
329605 GATAAAAATA
Statistics
Matches: 26, Mismatches: 1, Indels: 4
0.84 0.03 0.13
Matches are distributed among these distances:
20 8 0.31
22 18 0.69
ACGTcount: A:0.39, C:0.00, G:0.10, T:0.51
Consensus pattern (21 bp):
TTAAATTATTTATTTAATAGA
Found at i:329656 original size:17 final size:16
Alignment explanation
Indices: 329636--329685 Score: 55
Period size: 17 Copynumber: 2.9 Consensus size: 16
329626 ATTTAAGTTA
329636 ATTTAATTTAGATTATT
1 ATTTAATTTA-ATTATT
* *
329653 ATTTAATTAATATTTTT
1 ATTTAATTTA-ATTATT
329670 ATTTAAATTTAATTAT
1 ATTT-AATTTAATTAT
329686 AAAAATATAA
Statistics
Matches: 27, Mismatches: 5, Indels: 2
0.79 0.15 0.06
Matches are distributed among these distances:
17 22 0.81
18 5 0.19
ACGTcount: A:0.38, C:0.00, G:0.02, T:0.60
Consensus pattern (16 bp):
ATTTAATTTAATTATT
Found at i:331504 original size:2 final size:2
Alignment explanation
Indices: 331499--331528 Score: 60
Period size: 2 Copynumber: 15.0 Consensus size: 2
331489 GATGACAACT
331499 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
331529 CACACACATC
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 28 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:333801 original size:22 final size:22
Alignment explanation
Indices: 333758--333823 Score: 68
Period size: 21 Copynumber: 3.1 Consensus size: 22
333748 TATTTTTATT
333758 TAAAT-TTAATTATAAAAT-ATA
1 TAAATATTAA-TATAAAATAATA
333779 TAAATATTAATATAAAATAATA
1 TAAATATTAATATAAAATAATA
** *
333801 T-TTTAATAATATAAAATAA-A
1 TAAATATTAATATAAAATAATA
333821 TAA
1 TAA
333824 TAAAATAAGT
Statistics
Matches: 38, Mismatches: 4, Indels: 6
0.79 0.08 0.12
Matches are distributed among these distances:
20 2 0.05
21 28 0.74
22 8 0.21
ACGTcount: A:0.61, C:0.00, G:0.00, T:0.39
Consensus pattern (22 bp):
TAAATATTAATATAAAATAATA
Found at i:335126 original size:33 final size:33
Alignment explanation
Indices: 335080--335142 Score: 101
Period size: 34 Copynumber: 1.9 Consensus size: 33
335070 AATTTGAGAA
335080 GAATTTTAAGGAAT-ATTGGAGAAATGAATGTG
1 GAATTTTAAGGAATAATTGGAGAAATGAATGTG
*
335112 GAATTTTGAAGGAATAATTGGAGAATTGAAT
1 GAATTTT-AAGGAATAATTGGAGAAATGAAT
335143 TAATTATTTT
Statistics
Matches: 28, Mismatches: 1, Indels: 2
0.90 0.03 0.06
Matches are distributed among these distances:
32 7 0.25
33 7 0.25
34 14 0.50
ACGTcount: A:0.41, C:0.00, G:0.27, T:0.32
Consensus pattern (33 bp):
GAATTTTAAGGAATAATTGGAGAAATGAATGTG
Found at i:337795 original size:16 final size:16
Alignment explanation
Indices: 337774--337815 Score: 57
Period size: 16 Copynumber: 2.6 Consensus size: 16
337764 ATCAATTTCG
337774 GTTATTTTAAGTATAA
1 GTTATTTTAAGTATAA
* *
337790 GTTATTTTAATTTTAA
1 GTTATTTTAAGTATAA
*
337806 GTCATTTTAA
1 GTTATTTTAA
337816 ATTCGGAATA
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
16 23 1.00
ACGTcount: A:0.33, C:0.02, G:0.10, T:0.55
Consensus pattern (16 bp):
GTTATTTTAAGTATAA
Found at i:338971 original size:3 final size:3
Alignment explanation
Indices: 338950--338987 Score: 58
Period size: 3 Copynumber: 12.7 Consensus size: 3
338940 TTGCAAATTG
* *
338950 TTA TTA TTG TTA TTG TTA TTA TTA TTA TTA TTA TTA TT
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TT
338988 CTCAATTTTC
Statistics
Matches: 31, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
3 31 1.00
ACGTcount: A:0.26, C:0.00, G:0.05, T:0.68
Consensus pattern (3 bp):
TTA
Found at i:340616 original size:15 final size:15
Alignment explanation
Indices: 340596--340634 Score: 69
Period size: 15 Copynumber: 2.6 Consensus size: 15
340586 TGAGTTTTAG
340596 TTATTTTAATTTGAA
1 TTATTTTAATTTGAA
*
340611 TTATTTTAATTTGAG
1 TTATTTTAATTTGAA
340626 TTATTTTAA
1 TTATTTTAA
340635 CTTCGAGTTA
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
15 23 1.00
ACGTcount: A:0.31, C:0.00, G:0.08, T:0.62
Consensus pattern (15 bp):
TTATTTTAATTTGAA
Found at i:345258 original size:21 final size:21
Alignment explanation
Indices: 345232--345281 Score: 55
Period size: 21 Copynumber: 2.4 Consensus size: 21
345222 ATTACTGATT
345232 ATAATAATTACGATAATTATA
1 ATAATAATTACGATAATTATA
* ** *
345253 ATAATATTTATTATATTTATA
1 ATAATAATTACGATAATTATA
*
345274 ATCATAAT
1 ATAATAAT
345282 AAATATAATA
Statistics
Matches: 23, Mismatches: 6, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
21 23 1.00
ACGTcount: A:0.48, C:0.04, G:0.02, T:0.46
Consensus pattern (21 bp):
ATAATAATTACGATAATTATA
Found at i:346590 original size:3 final size:3
Alignment explanation
Indices: 346578--346619 Score: 77
Period size: 3 Copynumber: 14.3 Consensus size: 3
346568 TCAAAACAAA
346578 TAT T-T TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT T
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT T
346620 GTTGTTGTTG
Statistics
Matches: 38, Mismatches: 0, Indels: 2
0.95 0.00 0.05
Matches are distributed among these distances:
2 2 0.05
3 36 0.95
ACGTcount: A:0.31, C:0.00, G:0.00, T:0.69
Consensus pattern (3 bp):
TAT
Found at i:346725 original size:2 final size:2
Alignment explanation
Indices: 346718--346749 Score: 64
Period size: 2 Copynumber: 16.0 Consensus size: 2
346708 TTTAATTTTC
346718 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
346750 ATGTGTTTTG
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 30 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:346789 original size:10 final size:10
Alignment explanation
Indices: 346774--346816 Score: 50
Period size: 10 Copynumber: 4.1 Consensus size: 10
346764 TGCTTAAATC
346774 AAATAAATTA
1 AAATAAATTA
*
346784 AAATAAATTCT
1 AAATAAATT-A
346795 AAATCAAATTA
1 AAAT-AAATTA
*
346806 AATTAAATTA
1 AAATAAATTA
346816 A
1 A
346817 TTTGAAGGAC
Statistics
Matches: 28, Mismatches: 3, Indels: 4
0.80 0.09 0.11
Matches are distributed among these distances:
10 16 0.57
11 7 0.25
12 5 0.18
ACGTcount: A:0.63, C:0.05, G:0.00, T:0.33
Consensus pattern (10 bp):
AAATAAATTA
Found at i:346804 original size:22 final size:21
Alignment explanation
Indices: 346774--346814 Score: 64
Period size: 22 Copynumber: 1.9 Consensus size: 21
346764 TGCTTAAATC
346774 AAATAAATTAAAATAAATTCT
1 AAATAAATTAAAATAAATTCT
*
346795 AAATCAAATTAAATTAAATT
1 AAAT-AAATTAAAATAAATT
346815 AATTTGAAGG
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
21 4 0.22
22 14 0.78
ACGTcount: A:0.61, C:0.05, G:0.00, T:0.34
Consensus pattern (21 bp):
AAATAAATTAAAATAAATTCT
Found at i:348496 original size:22 final size:21
Alignment explanation
Indices: 348454--348496 Score: 50
Period size: 21 Copynumber: 2.0 Consensus size: 21
348444 ATACAGAAAC
* *
348454 CAATAAATAAAAAAGTTAATT
1 CAATAAATAAAAAACTAAATT
*
348475 CAATTAATAAAAAACTCAAATT
1 CAATAAATAAAAAACT-AAATT
348497 TAGTAGATAA
Statistics
Matches: 18, Mismatches: 3, Indels: 1
0.82 0.14 0.05
Matches are distributed among these distances:
21 14 0.78
22 4 0.22
ACGTcount: A:0.60, C:0.09, G:0.02, T:0.28
Consensus pattern (21 bp):
CAATAAATAAAAAACTAAATT
Found at i:352053 original size:20 final size:20
Alignment explanation
Indices: 352028--352067 Score: 71
Period size: 20 Copynumber: 2.0 Consensus size: 20
352018 AATGAAAAAC
352028 ATGTAAATAAGTCAATCTAT
1 ATGTAAATAAGTCAATCTAT
*
352048 ATGTAAATTAGTCAATCTAT
1 ATGTAAATAAGTCAATCTAT
352068 TATAAATCAG
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.42, C:0.10, G:0.10, T:0.38
Consensus pattern (20 bp):
ATGTAAATAAGTCAATCTAT
Found at i:352082 original size:20 final size:20
Alignment explanation
Indices: 352031--352078 Score: 62
Period size: 20 Copynumber: 2.5 Consensus size: 20
352021 GAAAAACATG
* *
352031 TAAATAAGTCAATCTATATG
1 TAAATCAGTCAATCTATATA
*
352051 TAAATTAGTCAATCTAT-TA
1 TAAATCAGTCAATCTATATA
352070 TAAATCAGT
1 TAAATCAGT
352079 TCAAATTTAA
Statistics
Matches: 25, Mismatches: 3, Indels: 1
0.86 0.10 0.03
Matches are distributed among these distances:
19 9 0.36
20 16 0.64
ACGTcount: A:0.44, C:0.10, G:0.08, T:0.38
Consensus pattern (20 bp):
TAAATCAGTCAATCTATATA
Found at i:352840 original size:6 final size:6
Alignment explanation
Indices: 352831--352864 Score: 68
Period size: 6 Copynumber: 5.7 Consensus size: 6
352821 GCTGCTGTGG
352831 CTGACC CTGACC CTGACC CTGACC CTGACC CTGA
1 CTGACC CTGACC CTGACC CTGACC CTGACC CTGA
352865 GGCCATGATG
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 28 1.00
ACGTcount: A:0.18, C:0.47, G:0.18, T:0.18
Consensus pattern (6 bp):
CTGACC
Found at i:356530 original size:15 final size:16
Alignment explanation
Indices: 356512--356555 Score: 54
Period size: 16 Copynumber: 2.8 Consensus size: 16
356502 TTTATTTATT
356512 AAATTAATTTTATAAA
1 AAATTAATTTTATAAA
* *
356528 AATTTAA-TATATAAA
1 AAATTAATTTTATAAA
356543 AATATTAATTTTA
1 AA-ATTAATTTTA
356556 AATAAATATT
Statistics
Matches: 22, Mismatches: 4, Indels: 3
0.76 0.14 0.10
Matches are distributed among these distances:
15 9 0.41
16 10 0.45
17 3 0.14
ACGTcount: A:0.55, C:0.00, G:0.00, T:0.45
Consensus pattern (16 bp):
AAATTAATTTTATAAA
Found at i:356564 original size:17 final size:17
Alignment explanation
Indices: 356514--356567 Score: 69
Period size: 17 Copynumber: 3.3 Consensus size: 17
356504 TATTTATTAA
356514 ATTAATTTTATAAAAAT
1 ATTAATTTTATAAAAAT
*
356531 -TTAA-TATATAAAAAT
1 ATTAATTTTATAAAAAT
356546 ATTAATTTTA-AATAAAT
1 ATTAATTTTATAA-AAAT
356563 ATTAA
1 ATTAA
356568 ATATAATTAA
Statistics
Matches: 32, Mismatches: 2, Indels: 6
0.80 0.05 0.15
Matches are distributed among these distances:
15 10 0.31
16 10 0.31
17 12 0.38
ACGTcount: A:0.56, C:0.00, G:0.00, T:0.44
Consensus pattern (17 bp):
ATTAATTTTATAAAAAT
Found at i:372140 original size:35 final size:33
Alignment explanation
Indices: 372085--372153 Score: 95
Period size: 35 Copynumber: 2.0 Consensus size: 33
372075 TATGGTTTAA
372085 AATAAAAATTAAATTATTTAAATT-TATTTATTT
1 AATAAAAATTAAATTATTTAAATTATA-TTATTT
*
372118 AATAAAAATTAATTTAATTTTAAATTATATTATTT
1 AATAAAAATTAAATT-A-TTTAAATTATATTATTT
372153 A
1 A
372154 TTTGTAATTT
Statistics
Matches: 32, Mismatches: 1, Indels: 4
0.86 0.03 0.11
Matches are distributed among these distances:
33 14 0.44
34 1 0.03
35 15 0.47
36 2 0.06
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (33 bp):
AATAAAAATTAAATTATTTAAATTATATTATTT
Found at i:372208 original size:20 final size:20
Alignment explanation
Indices: 372179--372221 Score: 61
Period size: 20 Copynumber: 2.1 Consensus size: 20
372169 TTAATTTTTT
*
372179 AATATTAATT-AAAATAATAA
1 AATATAAATTAAAAATAA-AA
372199 AATATAAATTAAAAATAAAA
1 AATATAAATTAAAAATAAAA
372219 AAT
1 AAT
372222 TTAATTAGAC
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
20 14 0.67
21 7 0.33
ACGTcount: A:0.70, C:0.00, G:0.00, T:0.30
Consensus pattern (20 bp):
AATATAAATTAAAAATAAAA
Found at i:373684 original size:16 final size:16
Alignment explanation
Indices: 373659--373729 Score: 53
Period size: 16 Copynumber: 4.7 Consensus size: 16
373649 ACTCAGTAAA
373659 TTTA-TAATTTTAACT
1 TTTATTAATTTTAACT
*
373674 TTTATTAATTTTAAGGT
1 TTTATTAATTTTAA-CT
** * *
373691 TACATTAA--GTAA-A
1 TTTATTAATTTTAACT
373704 TTTA-TAATTTTAACT
1 TTTATTAATTTTAACT
373719 TTTATTAATTT
1 TTTATTAATTT
373730 AAAAGTTACA
Statistics
Matches: 41, Mismatches: 9, Indels: 11
0.67 0.15 0.18
Matches are distributed among these distances:
12 3 0.07
13 2 0.05
14 3 0.07
15 11 0.27
16 15 0.37
17 7 0.17
ACGTcount: A:0.35, C:0.04, G:0.04, T:0.56
Consensus pattern (16 bp):
TTTATTAATTTTAACT
Found at i:373717 original size:45 final size:45
Alignment explanation
Indices: 373653--373744 Score: 166
Period size: 45 Copynumber: 2.0 Consensus size: 45
373643 TTCTTAACTC
* *
373653 AGTAAATTTATAATTTTAACTTTTATTAATTTTAAGGTTACATTA
1 AGTAAATTTATAATTTTAACTTTTATTAATTTAAAAGTTACATTA
373698 AGTAAATTTATAATTTTAACTTTTATTAATTTAAAAGTTACATTA
1 AGTAAATTTATAATTTTAACTTTTATTAATTTAAAAGTTACATTA
373743 AG
1 AG
373745 CATTAGGGAA
Statistics
Matches: 45, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
45 45 1.00
ACGTcount: A:0.40, C:0.04, G:0.07, T:0.49
Consensus pattern (45 bp):
AGTAAATTTATAATTTTAACTTTTATTAATTTAAAAGTTACATTA
Found at i:373758 original size:45 final size:45
Alignment explanation
Indices: 373662--373760 Score: 119
Period size: 45 Copynumber: 2.2 Consensus size: 45
373652 CAGTAAATTT
* * * ***
373662 ATAATTTTAACTTTTATTAATTTTAAGGTTACATTAAGTAAATTT
1 ATAATTTTAACTTTTATTAATTTAAAAGTTACATTAAGCAAAGGG
*
373707 ATAATTTTAACTTTTATTAATTTAAAAGTTACATTAAGCATTAGGG
1 ATAATTTTAACTTTTATTAATTTAAAAGTTACATTAAGCA-AAGGG
373753 A-AATTTTA
1 ATAATTTTA
373761 CATGCATAAT
Statistics
Matches: 46, Mismatches: 7, Indels: 2
0.84 0.13 0.04
Matches are distributed among these distances:
45 44 0.96
46 2 0.04
ACGTcount: A:0.39, C:0.05, G:0.08, T:0.47
Consensus pattern (45 bp):
ATAATTTTAACTTTTATTAATTTAAAAGTTACATTAAGCAAAGGG
Found at i:374651 original size:8 final size:8
Alignment explanation
Indices: 374638--374721 Score: 50
Period size: 8 Copynumber: 10.5 Consensus size: 8
374628 CCTTACAATA
374638 ATTTATAT
1 ATTTATAT
374646 ATTTATAAT
1 ATTTAT-AT
374655 ATATT-TAT
1 AT-TTATAT
*
374663 ATAT-TAT
1 ATTTATAT
374670 ATTTATA-
1 ATTTATAT
* *
374677 ATTAAAAT
1 ATTTATAT
374685 A-TTATAT
1 ATTTATAT
*
374692 GTTTATAT
1 ATTTATAT
*
374700 AAATTTAAAT
1 --ATTTATAT
*
374710 ATTTAAAT
1 ATTTATAT
374718 ATTT
1 ATTT
374722 CTTATTATAT
Statistics
Matches: 60, Mismatches: 9, Indels: 14
0.72 0.11 0.17
Matches are distributed among these distances:
7 16 0.27
8 31 0.52
9 5 0.08
10 8 0.13
ACGTcount: A:0.44, C:0.00, G:0.01, T:0.55
Consensus pattern (8 bp):
ATTTATAT
Found at i:374658 original size:11 final size:11
Alignment explanation
Indices: 374642--374678 Score: 56
Period size: 11 Copynumber: 3.2 Consensus size: 11
374632 ACAATAATTT
374642 ATATATTTATA
1 ATATATTTATA
374653 ATATATTTATA
1 ATATATTTATA
374664 TATTATATTTATA
1 -A-TATATTTATA
374677 AT
1 AT
374679 TAAAATATTA
Statistics
Matches: 24, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
11 12 0.50
12 2 0.08
13 10 0.42
ACGTcount: A:0.43, C:0.00, G:0.00, T:0.57
Consensus pattern (11 bp):
ATATATTTATA
Found at i:375431 original size:13 final size:14
Alignment explanation
Indices: 375413--375446 Score: 52
Period size: 14 Copynumber: 2.5 Consensus size: 14
375403 AATTAAAAAT
375413 TATTTAAT-TATTA
1 TATTTAATATATTA
375426 TATTTAATATATTA
1 TATTTAATATATTA
*
375440 TTTTTAA
1 TATTTAA
375447 ATAATTTATA
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
13 8 0.42
14 11 0.58
ACGTcount: A:0.38, C:0.00, G:0.00, T:0.62
Consensus pattern (14 bp):
TATTTAATATATTA
Found at i:376397 original size:14 final size:14
Alignment explanation
Indices: 376378--376405 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
376368 ATGCTATAAT
376378 AAAATTTAAATTAA
1 AAAATTTAAATTAA
376392 AAAATTTAAATTAA
1 AAAATTTAAATTAA
376406 TTCATAAAAA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.64, C:0.00, G:0.00, T:0.36
Consensus pattern (14 bp):
AAAATTTAAATTAA
Found at i:376865 original size:16 final size:16
Alignment explanation
Indices: 376834--376877 Score: 56
Period size: 16 Copynumber: 2.8 Consensus size: 16
376824 TCGTATATTT
376834 ATATTTTAT-TTAAAA
1 ATATTTTATATTAAAA
376849 A-ATTTATTATATTAAAA
1 ATA-TT-TTATATTAAAA
376866 ATATTTTATATT
1 ATATTTTATATT
376878 TATATAAATT
Statistics
Matches: 25, Mismatches: 0, Indels: 7
0.78 0.00 0.22
Matches are distributed among these distances:
14 1 0.04
15 3 0.12
16 11 0.44
17 9 0.36
18 1 0.04
ACGTcount: A:0.45, C:0.00, G:0.00, T:0.55
Consensus pattern (16 bp):
ATATTTTATATTAAAA
Found at i:377112 original size:17 final size:17
Alignment explanation
Indices: 377092--377124 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
377082 TTTATAATAT
377092 AAAAATATAAAATAAAA
1 AAAAATATAAAATAAAA
*
377109 AAAAATTTAAAATAAA
1 AAAAATATAAAATAAA
377125 TTATTAATTT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.79, C:0.00, G:0.00, T:0.21
Consensus pattern (17 bp):
AAAAATATAAAATAAAA
Found at i:377410 original size:17 final size:18
Alignment explanation
Indices: 377365--377420 Score: 62
Period size: 18 Copynumber: 3.1 Consensus size: 18
377355 AATAAATTTT
377365 AAAATATTATATAATATA
1 AAAATATTATATAATATA
*
377383 AAAATAATATA-AATA-A
1 AAAATATTATATAATATA
*
377399 AAAATAGTTATACGAATATA
1 AAAATA-TTATA-TAATATA
377419 AA
1 AA
377421 TTTATTAACC
Statistics
Matches: 32, Mismatches: 2, Indels: 6
0.80 0.05 0.15
Matches are distributed among these distances:
16 7 0.22
17 8 0.25
18 10 0.31
19 4 0.12
20 3 0.09
ACGTcount: A:0.64, C:0.02, G:0.04, T:0.30
Consensus pattern (18 bp):
AAAATATTATATAATATA
Found at i:378694 original size:69 final size:69
Alignment explanation
Indices: 378574--378712 Score: 224
Period size: 69 Copynumber: 2.0 Consensus size: 69
378564 TCACGGAGCA
*
378574 GTGGGAAGACAAAGATTGGAATCAATGGTATGTTTACTTATTATGACTAAGTTTTTCTTTGGTTT
1 GTGGGAAGACAAAGATTGGAATCAATGGTATGTTTACTTATTATGACTAAGTTTTTCTTTGCTTT
378639 ATTT
66 ATTT
* * * * *
378643 GTGGGAAGGCAAAGTTTGGAATCAATGGTATGTTTTCTTATTTTGATTAAGTTTTTCTTTGCTTT
1 GTGGGAAGACAAAGATTGGAATCAATGGTATGTTTACTTATTATGACTAAGTTTTTCTTTGCTTT
378708 ATTT
66 ATTT
378712 G
1 G
378713 ATAGTTGTAT
Statistics
Matches: 64, Mismatches: 6, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
69 64 1.00
ACGTcount: A:0.24, C:0.07, G:0.22, T:0.46
Consensus pattern (69 bp):
GTGGGAAGACAAAGATTGGAATCAATGGTATGTTTACTTATTATGACTAAGTTTTTCTTTGCTTT
ATTT
Found at i:382625 original size:2 final size:2
Alignment explanation
Indices: 382618--382647 Score: 60
Period size: 2 Copynumber: 15.0 Consensus size: 2
382608 ATGGTTTAAG
382618 CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT
1 CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT
382648 TGCTTGCTCT
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 28 1.00
ACGTcount: A:0.00, C:0.50, G:0.00, T:0.50
Consensus pattern (2 bp):
CT
Found at i:382968 original size:180 final size:180
Alignment explanation
Indices: 382624--382977 Score: 405
Period size: 180 Copynumber: 2.0 Consensus size: 180
382614 TAAGCTCTCT
* * *
382624 CTCTCTCTCTCTCTCTCTCTCTCTTGCTTGCTCTTGAACACACCCACGTATTCACTCACGCACAG
1 CTCTCTCTCCCTCTCTCTCTCTCTCGCTTGCTCTT-AACACACCCACATATTCACTCACGCACAG
* * ** *
382689 GCACACACCAAGCCCTTTCATGACTTACTCCTGTGCACACTCAACGTGCCCTGCTGCACATGCAG
65 GCACACACCAAGCCCTTTCACGACTTACTCCTGTGCACACACAACGCCCCCTGCGGCACATGCAG
* *
382754 ACACCCAAACACAAACCACAGAAAAGTGCATAATC-AAGTGATGTTTTAAG
130 ACACACAAACACAAACCACAGAAAAGTACATAATCTAAGTGATGTTTTAAG
* * * * * * *
382804 CTCTCTCTCCCTCTCTGTCTTTCTCGCTTGCTGTT-ATACACCCACAT-TTCCACTTATGCATAG
1 CTCTCTCTCCCTCTCTCTCTCTCTCGCTTGCTCTTAACACACCCACATATT-CACTCACGCACAG
* *
382867 GCACACACCAAGCCCTTTCACGACTTCCTCCCATGCT-CACACACATAC-CCCCCTGCGGCACGT
65 GCACACACCAAGCCCTTTCACGACTTACT-CC-TG-TGCACACACA-ACGCCCCCTGCGGCACAT
** *
382930 GCAGACACACAAACA-AACACCACAGTGAAGTACATAATCTGAGTGATG
126 GCAGACACACAAACACAA-ACCACAGAAAAGTACATAATCTAAGTGATG
382978 GTTCTATTTA
Statistics
Matches: 145, Mismatches: 22, Indels: 13
0.81 0.12 0.07
Matches are distributed among these distances:
177 2 0.01
178 47 0.32
179 4 0.03
180 82 0.57
181 10 0.07
ACGTcount: A:0.26, C:0.36, G:0.13, T:0.25
Consensus pattern (180 bp):
CTCTCTCTCCCTCTCTCTCTCTCTCGCTTGCTCTTAACACACCCACATATTCACTCACGCACAGG
CACACACCAAGCCCTTTCACGACTTACTCCTGTGCACACACAACGCCCCCTGCGGCACATGCAGA
CACACAAACACAAACCACAGAAAAGTACATAATCTAAGTGATGTTTTAAG
Found at i:383449 original size:24 final size:25
Alignment explanation
Indices: 383417--383465 Score: 82
Period size: 24 Copynumber: 2.0 Consensus size: 25
383407 TGATTTTGTG
383417 TTCATCTATTTATTAT-GTGATATA
1 TTCATCTATTTATTATGGTGATATA
*
383441 TTCATCTATTTTTTATGGTGATATA
1 TTCATCTATTTATTATGGTGATATA
383466 AAAAAATCAG
Statistics
Matches: 23, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
24 15 0.65
25 8 0.35
ACGTcount: A:0.27, C:0.08, G:0.10, T:0.55
Consensus pattern (25 bp):
TTCATCTATTTATTATGGTGATATA
Found at i:383709 original size:16 final size:16
Alignment explanation
Indices: 383675--383730 Score: 58
Period size: 16 Copynumber: 3.4 Consensus size: 16
383665 AGATCGTATC
383675 ATTTAATTAAATATAT
1 ATTTAATTAAATATAT
* * *
383691 ATTTTATTAAGTATTT
1 ATTTAATTAAATATAT
* *
383707 ATTAAATTTAAATATTT
1 ATTTAA-TTAAATATAT
383724 ATTTAAT
1 ATTTAAT
383731 AATATAATTA
Statistics
Matches: 32, Mismatches: 7, Indels: 2
0.78 0.17 0.05
Matches are distributed among these distances:
16 18 0.56
17 14 0.44
ACGTcount: A:0.43, C:0.00, G:0.02, T:0.55
Consensus pattern (16 bp):
ATTTAATTAAATATAT
Found at i:386884 original size:16 final size:15
Alignment explanation
Indices: 386810--386886 Score: 57
Period size: 16 Copynumber: 4.9 Consensus size: 15
386800 TCATTATCCG
* *
386810 AAATAATTCAAATTTT
1 AAATAATTTAAA-TTA
386826 AAATAATTTAAA-TA
1 AAATAATTTAAATTA
* *
386840 AAAAAATTTTAACTGTA
1 AAATAA-TTTAAAT-TA
* *
386857 ATATAATCTAAATCTA
1 AAATAATTTAAAT-TA
386873 AAATAATTTAAATT
1 AAATAATTTAAATT
386887 CGTAATTATT
Statistics
Matches: 47, Mismatches: 11, Indels: 7
0.72 0.17 0.11
Matches are distributed among these distances:
14 6 0.13
15 6 0.13
16 29 0.62
17 6 0.13
ACGTcount: A:0.55, C:0.05, G:0.01, T:0.39
Consensus pattern (15 bp):
AAATAATTTAAATTA
Found at i:387300 original size:2 final size:2
Alignment explanation
Indices: 387286--387326 Score: 57
Period size: 2 Copynumber: 21.0 Consensus size: 2
387276 CATAGCCCAA
* *
387286 CT CT CT CG C- CT CT CT CT CT GT CT CT CT CT CT CT CT CT CT CT
1 CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT
387327 TGAAAATCAC
Statistics
Matches: 35, Mismatches: 3, Indels: 2
0.88 0.08 0.05
Matches are distributed among these distances:
1 1 0.03
2 34 0.97
ACGTcount: A:0.00, C:0.49, G:0.05, T:0.46
Consensus pattern (2 bp):
CT
Found at i:387382 original size:6 final size:6
Alignment explanation
Indices: 387371--387419 Score: 53
Period size: 6 Copynumber: 8.2 Consensus size: 6
387361 TTCTTAAAAA
* * * **
387371 ATTTTG ATTTTG ATTTTA ATTCTG GTTTTG ATAATG ATTTTG ATTTTG
1 ATTTTG ATTTTG ATTTTG ATTTTG ATTTTG ATTTTG ATTTTG ATTTTG
387419 A
1 A
387420 GGTGCTTTCT
Statistics
Matches: 33, Mismatches: 10, Indels: 0
0.77 0.23 0.00
Matches are distributed among these distances:
6 33 1.00
ACGTcount: A:0.22, C:0.02, G:0.16, T:0.59
Consensus pattern (6 bp):
ATTTTG
Found at i:388267 original size:19 final size:21
Alignment explanation
Indices: 388219--388268 Score: 56
Period size: 19 Copynumber: 2.6 Consensus size: 21
388209 TTTTATTTAA
*
388219 TAAAGTAAA-ATTTTAATATT
1 TAAACTAAATATTTTAATATT
388239 TAAACT--ATATTTTAATA-T
1 TAAACTAAATATTTTAATATT
388257 TAAA-TAAATATT
1 TAAACTAAATATT
388269 ATATATAATA
Statistics
Matches: 26, Mismatches: 1, Indels: 7
0.76 0.03 0.21
Matches are distributed among these distances:
17 1 0.04
18 6 0.23
19 14 0.54
20 5 0.19
ACGTcount: A:0.50, C:0.02, G:0.02, T:0.46
Consensus pattern (21 bp):
TAAACTAAATATTTTAATATT
Found at i:388472 original size:17 final size:16
Alignment explanation
Indices: 388456--388507 Score: 54
Period size: 16 Copynumber: 3.3 Consensus size: 16
388446 AAAAATTATA
*
388456 TTATTAAATTAAATAT
1 TTATTATATTAAATAT
*
388472 ATT-TT-TATTAATTAT
1 -TTATTATATTAAATAT
*
388487 TTATTATATTTAATAT
1 TTATTATATTAAATAT
388503 TTATT
1 TTATT
388508 TAATATATTA
Statistics
Matches: 29, Mismatches: 4, Indels: 5
0.76 0.11 0.13
Matches are distributed among these distances:
14 2 0.07
15 10 0.34
16 15 0.52
17 2 0.07
ACGTcount: A:0.38, C:0.00, G:0.00, T:0.62
Consensus pattern (16 bp):
TTATTATATTAAATAT
Found at i:388498 original size:20 final size:20
Alignment explanation
Indices: 388470--388520 Score: 59
Period size: 20 Copynumber: 2.6 Consensus size: 20
388460 TAAATTAAAT
* *
388470 ATATTTTTATTAATTATTTA
1 ATATATTTAATAATTATTTA
* *
388490 TTATATTTAATATTTATTTA
1 ATATATTTAATAATTATTTA
388510 ATATA-TTAATA
1 ATATATTTAATA
388521 TTAAAAATTT
Statistics
Matches: 26, Mismatches: 5, Indels: 1
0.81 0.16 0.03
Matches are distributed among these distances:
19 6 0.23
20 20 0.77
ACGTcount: A:0.39, C:0.00, G:0.00, T:0.61
Consensus pattern (20 bp):
ATATATTTAATAATTATTTA
Found at i:388520 original size:19 final size:20
Alignment explanation
Indices: 388483--388522 Score: 64
Period size: 20 Copynumber: 2.0 Consensus size: 20
388473 TTTTTATTAA
*
388483 TTATTTATTATATTTAATAT
1 TTATTTAATATATTTAATAT
388503 TTATTTAATATA-TTAATAT
1 TTATTTAATATATTTAATAT
388522 T
1 T
388523 AAAAATTTTT
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
19 8 0.42
20 11 0.58
ACGTcount: A:0.38, C:0.00, G:0.00, T:0.62
Consensus pattern (20 bp):
TTATTTAATATATTTAATAT
Found at i:388930 original size:19 final size:19
Alignment explanation
Indices: 388875--388931 Score: 55
Period size: 19 Copynumber: 3.1 Consensus size: 19
388865 TTAATTATGT
* *
388875 ATAAAAA-ATTTATATATA
1 ATAAAAAGATTTTTATAAA
* *
388893 ATTAATAGATTATTT-TAAA
1 ATAAAAAGATT-TTTATAAA
388912 ATAAAAAGATTTTTATAAA
1 ATAAAAAGATTTTTATAAA
388931 A
1 A
388932 AAATTATATA
Statistics
Matches: 30, Mismatches: 6, Indels: 5
0.73 0.15 0.12
Matches are distributed among these distances:
18 8 0.27
19 20 0.67
20 2 0.07
ACGTcount: A:0.56, C:0.00, G:0.04, T:0.40
Consensus pattern (19 bp):
ATAAAAAGATTTTTATAAA
Found at i:388987 original size:132 final size:132
Alignment explanation
Indices: 388836--389075 Score: 417
Period size: 132 Copynumber: 1.8 Consensus size: 132
388826 CATCACATAC
* *
388836 ATATATAAATGGAATATATTAATTACTGTTTAATTATGTATAAAAAATTTATATATAATTAATAG
1 ATATAAAAATGGAAAATATTAATTACTGTTTAATTATGTATAAAAAATTTATATATAATTAATAG
* *
388901 ATTATTTTAAAATAAAAAGATTTTTATAAAAAAATTATATATATAAATTACTGTTTTAAAAATTT
66 ATTATTTAAAAATAAAAAGATATTTATAAAAAAATTATATATATAAATTACTGTTTTAAAAATTT
388966 AT
131 AT
**
388968 ATATAAAAATGGAAAATATTAATTACTGTTTAATTATGTATAAAAAATTTATATATAATTAATTT
1 ATATAAAAATGGAAAATATTAATTACTGTTTAATTATGTATAAAAAATTTATATATAATTAATAG
*
389033 TTTATTTAAAAATAAAAAGATATTTATAAAAAAATTATATATA
66 ATTATTTAAAAATAAAAAGATATTTATAAAAAAATTATATATA
389076 ATTAATGAAT
Statistics
Matches: 101, Mismatches: 7, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
132 101 1.00
ACGTcount: A:0.51, C:0.01, G:0.05, T:0.43
Consensus pattern (132 bp):
ATATAAAAATGGAAAATATTAATTACTGTTTAATTATGTATAAAAAATTTATATATAATTAATAG
ATTATTTAAAAATAAAAAGATATTTATAAAAAAATTATATATATAAATTACTGTTTTAAAAATTT
AT
Found at i:395310 original size:27 final size:27
Alignment explanation
Indices: 395280--395354 Score: 89
Period size: 32 Copynumber: 2.6 Consensus size: 27
395270 TAAGATCATG
395280 TTTAAAATAT-TTTATATTTATATAAAT
1 TTTAAAATATATTTATA-TTATATAAAT
395307 TTTAATATATTAATAATTTATATTATATAAAT
1 TTTAA-A-A-T-AT-ATTTATATTATATAAAT
395339 TTTAAAATATATTTAT
1 TTTAAAATATATTTAT
395355 GTGATGTAAT
Statistics
Matches: 42, Mismatches: 0, Indels: 12
0.78 0.00 0.22
Matches are distributed among these distances:
27 11 0.26
28 3 0.07
29 2 0.05
30 2 0.05
31 3 0.07
32 15 0.36
33 6 0.14
ACGTcount: A:0.45, C:0.00, G:0.00, T:0.55
Consensus pattern (27 bp):
TTTAAAATATATTTATATTATATAAAT
Found at i:395322 original size:18 final size:17
Alignment explanation
Indices: 395288--395342 Score: 64
Period size: 16 Copynumber: 3.4 Consensus size: 17
395278 TGTTTAAAAT
395288 ATTTTATATTTATATAA
1 ATTTTATATTTATATAA
395305 ATTTTAATATATTA-AT-A
1 ATTTT-ATAT-TTATATAA
395322 A-TTTATA-TTATATAA
1 ATTTTATATTTATATAA
395337 ATTTTA
1 ATTTTA
395343 AAATATATTT
Statistics
Matches: 33, Mismatches: 0, Indels: 11
0.75 0.00 0.25
Matches are distributed among these distances:
13 3 0.09
14 2 0.06
15 5 0.15
16 7 0.21
17 7 0.21
18 6 0.18
19 3 0.09
ACGTcount: A:0.44, C:0.00, G:0.00, T:0.56
Consensus pattern (17 bp):
ATTTTATATTTATATAA
Found at i:395336 original size:32 final size:33
Alignment explanation
Indices: 395285--395348 Score: 103
Period size: 32 Copynumber: 2.0 Consensus size: 33
395275 TCATGTTTAA
* *
395285 AATATTTTATATTTATATAAATTTTAATATATT
1 AATAATTTATATTTATATAAATTTTAAAATATT
395318 AATAATTTATA-TTATATAAATTTTAAAATAT
1 AATAATTTATATTTATATAAATTTTAAAATAT
395349 ATTTATGTGA
Statistics
Matches: 29, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
32 19 0.66
33 10 0.34
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (33 bp):
AATAATTTATATTTATATAAATTTTAAAATATT
Found at i:395348 original size:14 final size:14
Alignment explanation
Indices: 395298--395349 Score: 50
Period size: 14 Copynumber: 3.4 Consensus size: 14
395288 ATTTTATATT
395298 TATATAAATTTTAA
1 TATATAAATTTTAA
*
395312 TATATTAATAATTTATAT
1 TATA-T-A-AATTT-TAA
395330 TATATAAATTTTAA
1 TATATAAATTTTAA
*
395344 AATATA
1 TATATA
395350 TTTATGTGAT
Statistics
Matches: 31, Mismatches: 3, Indels: 8
0.74 0.07 0.19
Matches are distributed among these distances:
14 11 0.35
15 6 0.19
16 2 0.06
17 6 0.19
18 6 0.19
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (14 bp):
TATATAAATTTTAA
Found at i:395398 original size:14 final size:15
Alignment explanation
Indices: 395365--395401 Score: 51
Period size: 14 Copynumber: 2.6 Consensus size: 15
395355 GTGATGTAAT
395365 TTATATTT-TATATA
1 TTATATTTATATATA
*
395379 TCATATTTATATA-A
1 TTATATTTATATATA
395393 TTATATTTA
1 TTATATTTA
395402 AATTATCAAA
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
14 16 0.80
15 4 0.20
ACGTcount: A:0.38, C:0.03, G:0.00, T:0.59
Consensus pattern (15 bp):
TTATATTTATATATA
Found at i:396319 original size:18 final size:17
Alignment explanation
Indices: 396298--396360 Score: 58
Period size: 18 Copynumber: 3.6 Consensus size: 17
396288 TTTAACATAA
396298 TTATGATATTTTATATTT
1 TTAT-ATATTTTATATTT
396316 TTATATTATTTTA-ATATT
1 TTATA-TATTTTATAT-TT
* *
396334 ATATTATATTTTATATAT
1 TTA-TATATTTTATATTT
396352 TTATA-ATTT
1 TTATATATTT
396361 AATTTGTTTT
Statistics
Matches: 38, Mismatches: 3, Indels: 10
0.75 0.06 0.20
Matches are distributed among these distances:
16 4 0.11
17 5 0.13
18 25 0.66
19 4 0.11
ACGTcount: A:0.33, C:0.00, G:0.02, T:0.65
Consensus pattern (17 bp):
TTATATATTTTATATTT
Found at i:397700 original size:16 final size:14
Alignment explanation
Indices: 397683--397750 Score: 54
Period size: 14 Copynumber: 5.1 Consensus size: 14
397673 AATTACCAAT
397683 TATT-AAAATTATA
1 TATTAAAAATTATA
397696 TATTAAAAATTATA
1 TATTAAAAATTATA
** * *
397710 TATATTTATATTAAA
1 TAT-TAAAAATTATA
*
397725 TAAT-AAAA-TATA
1 TATTAAAAATTATA
397737 TATT-AAAATTATA
1 TATTAAAAATTATA
397750 T
1 T
397751 CTATTAAATA
Statistics
Matches: 43, Mismatches: 9, Indels: 6
0.74 0.16 0.10
Matches are distributed among these distances:
12 10 0.23
13 11 0.26
14 13 0.30
15 9 0.21
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (14 bp):
TATTAAAAATTATA
Found at i:398162 original size:2 final size:2
Alignment explanation
Indices: 398155--398190 Score: 72
Period size: 2 Copynumber: 18.0 Consensus size: 2
398145 CCTGATCACC
398155 CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT
1 CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT
398191 GTCACTCCCA
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 34 1.00
ACGTcount: A:0.00, C:0.50, G:0.00, T:0.50
Consensus pattern (2 bp):
CT
Found at i:403125 original size:69 final size:69
Alignment explanation
Indices: 403010--403963 Score: 1432
Period size: 69 Copynumber: 13.8 Consensus size: 69
403000 AGGCCTAAGT
* * * * *
403010 CGTCGGCTACTCCAAGAAAAAGAG-CCTTCTGTTGTTGGCCATGACGATTGGTCTTCCATGTTGG
1 CGTCGTCTGCTCCAAGAAAAAGAGCCCCTC-GTTGTTGGCCACGACGACTGGTCTTCCATGTTGG
*
403074 ATAAG
65 ATAAA
*
403079 CGTCGTTTGCTCCAAGAAAAAGAGCCCCTCGTTGTTGGCCACGACGACTGGTCTTCCATGTTGGA
1 CGTCGTCTGCTCCAAGAAAAAGAGCCCCTCGTTGTTGGCCACGACGACTGGTCTTCCATGTTGGA
*
403144 TAAG
66 TAAA
403148 CGTCGTCTGCTCCAAGAAAAAGAGCCCCTCGTTGTTGGCCACGACGACTGGTCTTCCATGTTGGA
1 CGTCGTCTGCTCCAAGAAAAAGAGCCCCTCGTTGTTGGCCACGACGACTGGTCTTCCATGTTGGA
403213 TAAA
66 TAAA
* * *
403217 CGTCGTCTGCTCCAAGAAAAAGAG-CCTTCTGTTGTTGGCCATGACGATTGGTCTTCCATGTTGG
1 CGTCGTCTGCTCCAAGAAAAAGAGCCCCTC-GTTGTTGGCCACGACGACTGGTCTTCCATGTTGG
403281 ATAAA
65 ATAAA
403286 CGTCGTCTGCTCCAAGAAAAAGAGCCCCTCGTTGTTGGCCACGACGACTGGTCTTCCATGTTGGA
1 CGTCGTCTGCTCCAAGAAAAAGAGCCCCTCGTTGTTGGCCACGACGACTGGTCTTCCATGTTGGA
403351 TAAA
66 TAAA
403355 CGTCGTCTGCTCCAAGAAAAAGAGCCCCTCGTTGTTGGCCACGACGACTGGTCTTCCATGTTGGA
1 CGTCGTCTGCTCCAAGAAAAAGAGCCCCTCGTTGTTGGCCACGACGACTGGTCTTCCATGTTGGA
403420 TAAA
66 TAAA
403424 CGTCGTCTGCTCCAAGAAAAAGAGCCCCTCGTTGTTGGCCACGACGACTGGTCTTCCATGTTGGA
1 CGTCGTCTGCTCCAAGAAAAAGAGCCCCTCGTTGTTGGCCACGACGACTGGTCTTCCATGTTGGA
403489 TAAA
66 TAAA
** * *
403493 CGTCGTCTGCTCCAAGAAAAAGAG-CTTTCTGTTGTTGGCCATGACGATTGGTCTTCCATGTTGG
1 CGTCGTCTGCTCCAAGAAAAAGAGCCCCTC-GTTGTTGGCCACGACGACTGGTCTTCCATGTTGG
403557 ATAAA
65 ATAAA
403562 CGTCGTCTGCTCCAAGAAAAAGAGCCCCTCGTTGTTGGCCACGACGACTGGTCTTCCATGTTGGA
1 CGTCGTCTGCTCCAAGAAAAAGAGCCCCTCGTTGTTGGCCACGACGACTGGTCTTCCATGTTGGA
403627 TAAA
66 TAAA
*
403631 CGTCGTCTGCTCCAAGAAAAAGAGCCTCCT-GTCGTTGGCCACGACGACTGGTCTTCCATGTTGG
1 CGTCGTCTGCTCCAAGAAAAAGAGCC-CCTCGTTGTTGGCCACGACGACTGGTCTTCCATGTTGG
*
403695 ATAAG
65 ATAAA
* * *
403700 CGTCGTCTGCTCCAAGAAAAAGAGCCCCCCGTTGTTGGTCAGGACGACTGGTCTTCCATGTTGGA
1 CGTCGTCTGCTCCAAGAAAAAGAGCCCCTCGTTGTTGGCCACGACGACTGGTCTTCCATGTTGGA
*
403765 TAAG
66 TAAA
* * * *
403769 CGTCGTCTGCTCCAAGAAAAAGAACCTCTCGTTGTTGGCCATGACGACTGGTCTTCCATGTTAGA
1 CGTCGTCTGCTCCAAGAAAAAGAGCCCCTCGTTGTTGGCCACGACGACTGGTCTTCCATGTTGGA
*
403834 CAAA
66 TAAA
* * * * * * * * * *
403838 CGTCGTCTGCTCCAAGATAAAGAGCCACTTGTCGTTGGCCATGGCGATTGGTCCTCTATGTTAGA
1 CGTCGTCTGCTCCAAGAAAAAGAGCCCCTCGTTGTTGGCCACGACGACTGGTCTTCCATGTTGGA
403903 TAAA
66 TAAA
* * * * * * * *
403907 CGTCGTCTACTACAAAAAAAAGAAACCCC-CGTTATTGGCCATGCCGATTGGTCTTCC
1 CGTCGTCTGCTCCAAGAAAAAG-AGCCCCTCGTTGTTGGCCACGACGACTGGTCTTCC
403964 GAAATAGAGA
Statistics
Matches: 819, Mismatches: 58, Indels: 16
0.92 0.06 0.02
Matches are distributed among these distances:
68 9 0.01
69 792 0.97
70 18 0.02
ACGTcount: A:0.23, C:0.26, G:0.25, T:0.26
Consensus pattern (69 bp):
CGTCGTCTGCTCCAAGAAAAAGAGCCCCTCGTTGTTGGCCACGACGACTGGTCTTCCATGTTGGA
TAAA
Found at i:406381 original size:20 final size:21
Alignment explanation
Indices: 406331--406374 Score: 56
Period size: 20 Copynumber: 2.2 Consensus size: 21
406321 TATTTTTATA
*
406331 TAAATATA-AAAAATATTTTT
1 TAAATATATTAAAATATTTTT
*
406351 TGAATATATTAAAAT-TTTTT
1 TAAATATATTAAAATATTTTT
406371 TAAA
1 TAAA
406375 ATAATTATAT
Statistics
Matches: 20, Mismatches: 3, Indels: 2
0.80 0.12 0.08
Matches are distributed among these distances:
20 15 0.75
21 5 0.25
ACGTcount: A:0.50, C:0.00, G:0.02, T:0.48
Consensus pattern (21 bp):
TAAATATATTAAAATATTTTT
Found at i:407666 original size:21 final size:21
Alignment explanation
Indices: 407636--407676 Score: 66
Period size: 22 Copynumber: 2.0 Consensus size: 21
407626 ATCCATACAT
407636 ATTATATTTTA-AAAAATAAA
1 ATTATATTTTACAAAAATAAA
407656 ATTATTATTTTACAAAAATAA
1 ATTA-TATTTTACAAAAATAA
407677 CATATAATAA
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
20 4 0.21
21 7 0.37
22 8 0.42
ACGTcount: A:0.56, C:0.02, G:0.00, T:0.41
Consensus pattern (21 bp):
ATTATATTTTACAAAAATAAA
Found at i:407802 original size:22 final size:23
Alignment explanation
Indices: 407777--407833 Score: 75
Period size: 22 Copynumber: 2.6 Consensus size: 23
407767 ATAAAAATTT
*
407777 AAATAAATATAATATATAA-A-AA
1 AAAT-AATATAAAATATAATATAA
407799 AAATAAT-TAAAATATAATATAA
1 AAATAATATAAAATATAATATAA
407821 AAATAATATAAAA
1 AAATAATATAAAA
407834 ATGATACATA
Statistics
Matches: 31, Mismatches: 1, Indels: 5
0.84 0.03 0.14
Matches are distributed among these distances:
20 9 0.29
21 4 0.13
22 13 0.42
23 5 0.16
ACGTcount: A:0.72, C:0.00, G:0.00, T:0.28
Consensus pattern (23 bp):
AAATAATATAAAATATAATATAA
Found at i:407810 original size:38 final size:37
Alignment explanation
Indices: 407759--407834 Score: 100
Period size: 38 Copynumber: 2.0 Consensus size: 37
407749 TTAGTGTATT
* *
407759 AAAAATAAATAAAAATTTAA-ATAAATATAATATATAAA
1 AAAAATAAAT-AAAATATAATATAAAAATAATATA-AAA
*
407797 AAAAATAATTAAAATATAATATAAAAATAATATAAAA
1 AAAAATAAATAAAATATAATATAAAAATAATATAAAA
407834 A
1 A
407835 TGATACATAA
Statistics
Matches: 34, Mismatches: 3, Indels: 3
0.85 0.08 0.08
Matches are distributed among these distances:
37 12 0.35
38 22 0.65
ACGTcount: A:0.72, C:0.00, G:0.00, T:0.28
Consensus pattern (37 bp):
AAAAATAAATAAAATATAATATAAAAATAATATAAAA
Found at i:407835 original size:11 final size:11
Alignment explanation
Indices: 407758--407835 Score: 64
Period size: 11 Copynumber: 7.6 Consensus size: 11
407748 ATTAGTGTAT
407758 TAAAAATAA-A
1 TAAAAATAATA
407768 TAAAAAT--T-
1 TAAAAATAATA
*
407776 TAAATA-AATA
1 TAAAAATAATA
*
407786 TAATATATAA-A
1 TAA-AAATAATA
407797 -AAAAATAAT-
1 TAAAAATAATA
407806 TAAAATATAATA
1 TAAAA-ATAATA
407818 TAAAAATAATA
1 TAAAAATAATA
407829 TAAAAAT
1 TAAAAAT
407836 GATACATAAT
Statistics
Matches: 56, Mismatches: 2, Indels: 19
0.73 0.03 0.25
Matches are distributed among these distances:
8 5 0.09
9 6 0.11
10 16 0.29
11 22 0.39
12 7 0.12
ACGTcount: A:0.71, C:0.00, G:0.00, T:0.29
Consensus pattern (11 bp):
TAAAAATAATA
Found at i:409606 original size:54 final size:54
Alignment explanation
Indices: 409539--409644 Score: 169
Period size: 54 Copynumber: 2.0 Consensus size: 54
409529 GGGGCCAGTC
*
409539 AGTAGGGGCATGTCACGTGACTTTAATA-ATTTTTCATGTAATTTATATTTATAT
1 AGTAGGGGCATGTCACGTGA-TTTAATATATTTATCATGTAATTTATATTTATAT
* *
409593 AGTAGGGGCATGTCACGTGATTTTATATATTTATCGTGTAATTTATATTTAT
1 AGTAGGGGCATGTCACGTGATTTAATATATTTATCATGTAATTTATATTTAT
409645 TTAATATAAT
Statistics
Matches: 48, Mismatches: 3, Indels: 2
0.91 0.06 0.04
Matches are distributed among these distances:
53 6 0.12
54 42 0.88
ACGTcount: A:0.28, C:0.08, G:0.18, T:0.45
Consensus pattern (54 bp):
AGTAGGGGCATGTCACGTGATTTAATATATTTATCATGTAATTTATATTTATAT
Found at i:412137 original size:34 final size:34
Alignment explanation
Indices: 412094--412159 Score: 132
Period size: 34 Copynumber: 1.9 Consensus size: 34
412084 ATATAGATTC
412094 GTAGTTATATAAAGCCTACCTGAATTGGCAATTT
1 GTAGTTATATAAAGCCTACCTGAATTGGCAATTT
412128 GTAGTTATATAAAGCCTACCTGAATTGGCAAT
1 GTAGTTATATAAAGCCTACCTGAATTGGCAAT
412160 GGCGCTGGCA
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
34 32 1.00
ACGTcount: A:0.33, C:0.15, G:0.18, T:0.33
Consensus pattern (34 bp):
GTAGTTATATAAAGCCTACCTGAATTGGCAATTT
Found at i:412675 original size:33 final size:34
Alignment explanation
Indices: 412637--412711 Score: 86
Period size: 33 Copynumber: 2.3 Consensus size: 34
412627 ATAACGAGAC
412637 ATAAATATATAAATAT-TTCAAAAGTTATAT-AAT
1 ATAAATATATAAATATATT-AAAAGTTATATAAAT
* * *
412670 ATAAAT-TATTAATATATTAAAATTTATGTAAAT
1 ATAAATATATAAATATATTAAAAGTTATATAAAT
412703 ATAAA-ATAT
1 ATAAATATAT
412712 CTTAAATAAA
Statistics
Matches: 36, Mismatches: 3, Indels: 6
0.80 0.07 0.13
Matches are distributed among these distances:
32 17 0.47
33 19 0.53
ACGTcount: A:0.55, C:0.01, G:0.03, T:0.41
Consensus pattern (34 bp):
ATAAATATATAAATATATTAAAAGTTATATAAAT
Found at i:414414 original size:26 final size:27
Alignment explanation
Indices: 414380--414430 Score: 63
Period size: 26 Copynumber: 1.9 Consensus size: 27
414370 ATAATAAAAA
414380 TTATCAAAT-TATTAAT-TTATTAAATTT
1 TTATCAAATATA-TAATATT-TTAAATTT
414407 TTAT-AAATATATAATATTTTAAAT
1 TTATCAAATATATAATATTTTAAAT
414431 ATAATTATAA
Statistics
Matches: 22, Mismatches: 0, Indels: 5
0.81 0.00 0.19
Matches are distributed among these distances:
26 14 0.64
27 8 0.36
ACGTcount: A:0.45, C:0.02, G:0.00, T:0.53
Consensus pattern (27 bp):
TTATCAAATATATAATATTTTAAATTT
Found at i:425117 original size:48 final size:45
Alignment explanation
Indices: 425065--425170 Score: 110
Period size: 48 Copynumber: 2.3 Consensus size: 45
425055 TATGAGCTTT
425065 TTTTTTATTATTATAAGTTATTTTTT-AAATTAAAAGATATAAAAGATA
1 TTTTTTATTATTATAA-TTATTTTTTAAAATT-AAA-ATATAAAA-ATA
* * *
425113 TTTTTTAAGTA-AATAATTATTTTTTAAAATTAAAATATTAAAATA
1 TTTTTT-ATTATTATAATTATTTTTTAAAATTAAAATATAAAAATA
*
425158 TTTTTAATT-TTAT
1 TTTTTTATTATTAT
425171 TTTATTATTA
Statistics
Matches: 49, Mismatches: 6, Indels: 10
0.75 0.09 0.15
Matches are distributed among these distances:
44 4 0.08
45 8 0.16
46 7 0.14
47 12 0.24
48 15 0.31
49 3 0.06
ACGTcount: A:0.43, C:0.00, G:0.04, T:0.53
Consensus pattern (45 bp):
TTTTTTATTATTATAATTATTTTTTAAAATTAAAATATAAAAATA
Found at i:426599 original size:18 final size:18
Alignment explanation
Indices: 426559--426600 Score: 59
Period size: 18 Copynumber: 2.3 Consensus size: 18
426549 GATAATATGC
426559 TTAATAAATATAAATAAT
1 TTAATAAATATAAATAAT
*
426577 ATAATAAATATGAAAT-AT
1 TTAATAAATAT-AAATAAT
426595 TTAATA
1 TTAATA
426601 CATAAATTAA
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
18 17 0.81
19 4 0.19
ACGTcount: A:0.60, C:0.00, G:0.02, T:0.38
Consensus pattern (18 bp):
TTAATAAATATAAATAAT
Found at i:426651 original size:2 final size:2
Alignment explanation
Indices: 426644--426691 Score: 96
Period size: 2 Copynumber: 24.0 Consensus size: 2
426634 TGTCATCAAT
426644 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
426686 TA TA TA
1 TA TA TA
426692 CACTTACATG
Statistics
Matches: 46, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 46 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:427042 original size:2 final size:2
Alignment explanation
Indices: 427035--427065 Score: 62
Period size: 2 Copynumber: 15.5 Consensus size: 2
427025 AGGGCAGTAA
427035 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
427066 CACACACCGA
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 29 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:432188 original size:2 final size:2
Alignment explanation
Indices: 432181--432219 Score: 78
Period size: 2 Copynumber: 19.5 Consensus size: 2
432171 CGATCAGAAA
432181 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG A
1 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG A
432220 ACGGCAATGG
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 37 1.00
ACGTcount: A:0.51, C:0.00, G:0.49, T:0.00
Consensus pattern (2 bp):
AG
Found at i:432771 original size:21 final size:21
Alignment explanation
Indices: 432745--432785 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 21
432735 ATATAAAATG
*
432745 TAAGTAATTT-TTTAATAAAAA
1 TAAGT-ATTTATTAAATAAAAA
432766 TAAGTATTTATTAAATAAAA
1 TAAGTATTTATTAAATAAAA
432786 GGGTAGTTTT
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
20 4 0.22
21 14 0.78
ACGTcount: A:0.54, C:0.00, G:0.05, T:0.41
Consensus pattern (21 bp):
TAAGTATTTATTAAATAAAAA
Found at i:433174 original size:27 final size:26
Alignment explanation
Indices: 433140--433200 Score: 72
Period size: 27 Copynumber: 2.3 Consensus size: 26
433130 ATTGTATATC
433140 ATAT-ATTATTTAATAT-ATAAATAAA
1 ATATAATTATTT-ATATCATAAATAAA
* *
433165 TTATTAATTATTTATATCATACATAAA
1 ATA-TAATTATTTATATCATAAATAAA
433192 ATATAATTA
1 ATATAATTA
433201 AAAATAAAAT
Statistics
Matches: 30, Mismatches: 3, Indels: 5
0.79 0.08 0.13
Matches are distributed among these distances:
25 2 0.07
26 11 0.37
27 17 0.57
ACGTcount: A:0.51, C:0.03, G:0.00, T:0.46
Consensus pattern (26 bp):
ATATAATTATTTATATCATAAATAAA
Found at i:433550 original size:40 final size:40
Alignment explanation
Indices: 433506--433644 Score: 138
Period size: 40 Copynumber: 3.5 Consensus size: 40
433496 CACACCGTTG
* * *
433506 CACATTTTTTAACATATATTTTTAATTT-CTT-CGTATTTGA
1 CACATTTTTGAACATATTTTTTTAATTTAATTAC--ATTTGA
* *
433546 CACATTTTTGAACGTATTTTTTTGATTTAATTACATTTGA
1 CACATTTTTGAACATATTTTTTTAATTTAATTACATTTGA
* * * * *
433586 CACATTTTCGAACATATTTTTTTGATTCAATCACGTTTGA
1 CACATTTTTGAACATATTTTTTTAATTTAATTACATTTGA
**
433626 CACATTTTCAAACATATTT
1 CACATTTTTGAACATATTT
433645 GTGATTTCAT
Statistics
Matches: 86, Mismatches: 11, Indels: 4
0.85 0.11 0.04
Matches are distributed among these distances:
40 83 0.97
41 2 0.02
42 1 0.01
ACGTcount: A:0.29, C:0.14, G:0.07, T:0.50
Consensus pattern (40 bp):
CACATTTTTGAACATATTTTTTTAATTTAATTACATTTGA
Found at i:433659 original size:38 final size:39
Alignment explanation
Indices: 433541--433665 Score: 128
Period size: 40 Copynumber: 3.2 Consensus size: 39
433531 TTTCTTCGTA
** * * * * *
433541 TTTGACACATTTTTGAACGTATTTTTTTGATTTAATTACA
1 TTTGACACATTTTCAAACATA-TTTTGTGATTCAATCACG
* *
433581 TTTGACACATTTTCGAACATATTTTTTTGATTCAATCACG
1 TTTGACACATTTTCAAACATA-TTTTGTGATTCAATCACG
433621 TTTGACACATTTTCAAACATA-TTTGTGATTTC-ATCACG
1 TTTGACACATTTTCAAACATATTTTGTGA-TTCAATCACG
433659 TTTGACA
1 TTTGACA
433666 GTGTGATTGT
Statistics
Matches: 77, Mismatches: 7, Indels: 4
0.88 0.08 0.05
Matches are distributed among these distances:
38 19 0.25
39 3 0.04
40 55 0.71
ACGTcount: A:0.28, C:0.15, G:0.10, T:0.46
Consensus pattern (39 bp):
TTTGACACATTTTCAAACATATTTTGTGATTCAATCACG
Found at i:440625 original size:9 final size:9
Alignment explanation
Indices: 440611--440645 Score: 70
Period size: 9 Copynumber: 3.9 Consensus size: 9
440601 GTATACCAAA
440611 TATTTCAAG
1 TATTTCAAG
440620 TATTTCAAG
1 TATTTCAAG
440629 TATTTCAAG
1 TATTTCAAG
440638 TATTTCAA
1 TATTTCAA
440646 ACTCTGCAGT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 26 1.00
ACGTcount: A:0.34, C:0.11, G:0.09, T:0.46
Consensus pattern (9 bp):
TATTTCAAG
Found at i:441313 original size:93 final size:93
Alignment explanation
Indices: 441177--441402 Score: 301
Period size: 93 Copynumber: 2.4 Consensus size: 93
441167 GAGTTCTTGG
* * * *
441177 GGCAGAGCTTACCAATCCAG-ACTTCTGGACCTCAGAAGCCACACCTTCAGCAGCAGAGATGGCT
1 GGCAGAGCTTACCACTCCAGTAC-TCTGGACCTCAGTAGGCACACCTTCAGCAGCAGAGATGACT
441241 CCGGACGAGACCTGCTGGAGGAATCCCGA
65 CCGGACGAGACCTGCTGGAGGAATCCCGA
* * *
441270 GGCAGAGCTCAACACTCCAGTACTCTGGACCTCAGTAGGCACACCTTCAGCAGCCGAGATGACTC
1 GGCAGAGCTTACCACTCCAGTACTCTGGACCTCAGTAGGCACACCTTCAGCAGCAGAGATGACTC
* * * * *
441335 CGGATGTGACCTGGTTGAGGAATCCGGA
66 CGGACGAGACCTGCTGGAGGAATCCCGA
* * *
441363 AGCAGAGCTTACCACTCCAGTACTCTGGACTTTAGTAGGC
1 GGCAGAGCTTACCACTCCAGTACTCTGGACCTCAGTAGGC
441403 TCATCAACAG
Statistics
Matches: 115, Mismatches: 17, Indels: 2
0.86 0.13 0.01
Matches are distributed among these distances:
93 113 0.98
94 2 0.02
ACGTcount: A:0.26, C:0.30, G:0.27, T:0.18
Consensus pattern (93 bp):
GGCAGAGCTTACCACTCCAGTACTCTGGACCTCAGTAGGCACACCTTCAGCAGCAGAGATGACTC
CGGACGAGACCTGCTGGAGGAATCCCGA
Found at i:442778 original size:2 final size:2
Alignment explanation
Indices: 442771--442796 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
442761 TGAGATAAAA
442771 AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT
442797 CTGTAATTTC
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:443418 original size:114 final size:114
Alignment explanation
Indices: 443213--443481 Score: 511
Period size: 114 Copynumber: 2.4 Consensus size: 114
443203 CAGCCACACC
* *
443213 TTGGGCAGCCGAGATGGCATCGGATGAGACCTGCTTGATGAATCCGGAGGCAGTATTCAGCACTC
1 TTGGACAGCCGAGATGGCATCGGATGAGACCTGCTTGATGAATCCCGAGGCAGTATTCAGCACTC
443278 CACCACTCTGGACCCCAGTAGCCATACCAATAGCCGCTCCTGGAACATT
66 CACCACTCTGGACCCCAGTAGCCATACCAATAGCCGCTCCTGGAACATT
443327 TTGGACAGCCGAGATGGCATCGGATGAGACCTGCTTGATGAATCCCGAGGCAGTATTCAGCACTC
1 TTGGACAGCCGAGATGGCATCGGATGAGACCTGCTTGATGAATCCCGAGGCAGTATTCAGCACTC
443392 CACCACTCTGGACCCCAGTAGCCATACCAATAGCCGCTCCTGGAACATT
66 CACCACTCTGGACCCCAGTAGCCATACCAATAGCCGCTCCTGGAACATT
*
443441 TTGGACAGCCGAGATGGCTTCGGATGAGACCTGCTTGATGA
1 TTGGACAGCCGAGATGGCATCGGATGAGACCTGCTTGATGA
443482 CTGAAGGGAC
Statistics
Matches: 152, Mismatches: 3, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
114 152 1.00
ACGTcount: A:0.25, C:0.29, G:0.26, T:0.21
Consensus pattern (114 bp):
TTGGACAGCCGAGATGGCATCGGATGAGACCTGCTTGATGAATCCCGAGGCAGTATTCAGCACTC
CACCACTCTGGACCCCAGTAGCCATACCAATAGCCGCTCCTGGAACATT
Found at i:447367 original size:28 final size:31
Alignment explanation
Indices: 447323--447386 Score: 91
Period size: 28 Copynumber: 2.2 Consensus size: 31
447313 TTAGATTTAT
447323 AATTT-TAAAATAATATAATAAAAA-ATT-A
1 AATTTATAAAATAATATAATAAAAATATTAA
*
447351 AATTTATAAAA-ATTATAATAAAAATATTAA
1 AATTTATAAAATAATATAATAAAAATATTAA
447381 AATTTA
1 AATTTA
447387 AATTTTAAAC
Statistics
Matches: 32, Mismatches: 1, Indels: 4
0.86 0.03 0.11
Matches are distributed among these distances:
28 17 0.53
29 8 0.25
30 7 0.22
ACGTcount: A:0.62, C:0.00, G:0.00, T:0.38
Consensus pattern (31 bp):
AATTTATAAAATAATATAATAAAAATATTAA
Found at i:447626 original size:30 final size:31
Alignment explanation
Indices: 447590--447670 Score: 87
Period size: 32 Copynumber: 2.6 Consensus size: 31
447580 ATTATTCAAA
447590 AATAAAATATATTTTTAAT-ATATAAATATTAAT
1 AATAAAATATATTTTTAATAATAT-AATA--AAT
*
447623 AA-AAAATA-ATATTTTATTAATATAATAAAT
1 AATAAAATATAT-TTTTAATAATATAATAAAT
*
447653 AATAAAATAAATTTTTAA
1 AATAAAATATATTTTTAA
447671 GTCGATCAAA
Statistics
Matches: 42, Mismatches: 2, Indels: 10
0.78 0.04 0.19
Matches are distributed among these distances:
30 5 0.12
31 13 0.31
32 18 0.43
33 6 0.14
ACGTcount: A:0.58, C:0.00, G:0.00, T:0.42
Consensus pattern (31 bp):
AATAAAATATATTTTTAATAATATAATAAAT
Found at i:449130 original size:17 final size:17
Alignment explanation
Indices: 449108--449141 Score: 50
Period size: 17 Copynumber: 2.0 Consensus size: 17
449098 AAATAATTTA
449108 TATATTCATATTATATT
1 TATATTCATATTATATT
**
449125 TATATTTTTATTATATT
1 TATATTCATATTATATT
449142 ATAATTGTAT
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.32, C:0.03, G:0.00, T:0.65
Consensus pattern (17 bp):
TATATTCATATTATATT
Found at i:449270 original size:27 final size:28
Alignment explanation
Indices: 449185--449270 Score: 85
Period size: 27 Copynumber: 3.2 Consensus size: 28
449175 ATTTGATACG
* *
449185 TTAATAATTTATAT-TATA-AATTTTTAA
1 TTAATAATTTATATCTATATTATATTT-A
449212 TT-ATATATTTATATC-ATATTATATCTTA
1 TTAATA-ATTTATATCTATATTATAT-TTA
449240 -TAATAATTT-TATCTATATTATATTTA
1 TTAATAATTTATATCTATATTATATTTA
449266 TTAAT
1 TTAAT
449271 TATGTTTAAA
Statistics
Matches: 50, Mismatches: 2, Indels: 14
0.76 0.03 0.21
Matches are distributed among these distances:
26 10 0.20
27 31 0.62
28 7 0.14
29 2 0.04
ACGTcount: A:0.40, C:0.03, G:0.00, T:0.57
Consensus pattern (28 bp):
TTAATAATTTATATCTATATTATATTTA
Found at i:449992 original size:26 final size:26
Alignment explanation
Indices: 449963--450025 Score: 72
Period size: 26 Copynumber: 2.4 Consensus size: 26
449953 GTTTATAAAT
*
449963 AATAATAAAATTTATATTAATATTAG
1 AATAATAAAATTTAAATTAATATTAG
* * * *
449989 AATAATTAAATTTAAATTATTTTTAT
1 AATAATAAAATTTAAATTAATATTAG
*
450015 AATTATAAAAT
1 AATAATAAAAT
450026 AATAATTTAA
Statistics
Matches: 30, Mismatches: 7, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
26 30 1.00
ACGTcount: A:0.52, C:0.00, G:0.02, T:0.46
Consensus pattern (26 bp):
AATAATAAAATTTAAATTAATATTAG
Found at i:450384 original size:9 final size:9
Alignment explanation
Indices: 450357--450386 Score: 51
Period size: 9 Copynumber: 3.2 Consensus size: 9
450347 AGAGATGAGT
450357 TTTAATCGA
1 TTTAATCGA
450366 TTTGAATCGA
1 TTT-AATCGA
450376 TTTAATCGA
1 TTTAATCGA
450385 TT
1 TT
450387 AAATTAATTA
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
9 11 0.55
10 9 0.45
ACGTcount: A:0.30, C:0.10, G:0.13, T:0.47
Consensus pattern (9 bp):
TTTAATCGA
Found at i:451935 original size:120 final size:120
Alignment explanation
Indices: 451644--452607 Score: 1348
Period size: 120 Copynumber: 8.1 Consensus size: 120
451634 GAAATATTAT
* *
451644 GTTCGAATTTGGCTTGATCCAAAAGAGTTGGGGATGCAAGTGACTTGA-TATACTTAGAAATGTT
1 GTTCGAATTAGGCTTGATCCAAAAGATTTGGGGATGCAAGTGACTT-ATTATACTTAGAAATGTT
* * *
451708 TATTGATCGAGTTGAATTATATCATAATTTTAAAAATTTTAAGAA--TCTGTGTAG
65 TATTGATCGAGTTGAATCAGATCATAATTTTAAAAATTTTAAGAATTTCTGTTTAG
* * * * *
451762 GTTCGAATTAGGTTTGATCCAAAAGATTTGGGGATGCAAATGACTTAGTATACTTAGAATTGGTT
1 GTTCGAATTAGGCTTGATCCAAAAGATTTGGGGATGCAAGTGACTTATTATACTTAGAAATGTTT
*
451827 ATTGATCTAGTTGAATCAGATCATAATTTTAAAAATTTTAAGAATTTCTGTTTAG
66 ATTGATCGAGTTGAATCAGATCATAATTTTAAAAATTTTAAGAATTTCTGTTTAG
* ** *
451882 GTTCGAATTAGACTTGATCCAAAAGATTTGGGGATGCAAGTGACTTAGCATACTTAGAATTGTTT
1 GTTCGAATTAGGCTTGATCCAAAAGATTTGGGGATGCAAGTGACTTATTATACTTAGAAATGTTT
* * *
451947 ATTGATCGAGTTAAATCAGATCATAATTTTAAAAATTTTAAGAATTTTTGTTTAA
66 ATTGATCGAGTTGAATCAGATCATAATTTTAAAAATTTTAAGAATTTCTGTTTAG
* *
452002 GTTCGAATTAGGCTTGATTCAAAAGATTT-GGGATGCAAGTGAC--ATTATATTTAGAAATGTTT
1 GTTCGAATTAGGCTTGATCCAAAAGATTTGGGGATGCAAGTGACTTATTATACTTAGAAATGTTT
*
452064 ATTGATCGAGTTGAATCAGATCATAATTTTAAAAATTTTAAGAATTTCTATTTAG
66 ATTGATCGAGTTGAATCAGATCATAATTTTAAAAATTTTAAGAATTTCTGTTTAG
* *
452119 GTTCGAATTAGGCTTGATCCAAAAGATTTAGGGATGCAAGTGACTTATTATACTTAGAATTGTTT
1 GTTCGAATTAGGCTTGATCCAAAAGATTTGGGGATGCAAGTGACTTATTATACTTAGAAATGTTT
* * *
452184 ATTGATCGAGTTGAATCAAATCATAATTTTAAAAACTTTAAAAATTTCTGTTTAG
66 ATTGATCGAGTTGAATCAGATCATAATTTTAAAAATTTTAAGAATTTCTGTTTAG
* *
452239 GTTCGAATTAGGCTTGATGCAAAAGATTTGGAGATGCAAGTGACTTATTATACTTAGAAATGTTT
1 GTTCGAATTAGGCTTGATCCAAAAGATTTGGGGATGCAAGTGACTTATTATACTTAGAAATGTTT
* * * * *
452304 ATTGATCGAGTTG-ATCCATATCACAATTTTAAAAATTTAAAAAATTTTTGTTTAG
66 ATTGATCGAGTTGAAT-CAGATCATAATTTTAAAAATTTTAAGAATTTCTGTTTAG
* * * * * *
452359 GTTCGAATTAAGCTTGATCCAAAAAATTTGGAGATGTAAGTGATTTATTATACTTAGAAATGTTA
1 GTTCGAATTAGGCTTGATCCAAAAGATTTGGGGATGCAAGTGACTTATTATACTTAGAAATGTTT
* * * * *
452424 ATTGATCGAGTTGAATTAGATTACAATTTTAAAAATTTTAAAAATTTCTGTTTAA
66 ATTGATCGAGTTGAATCAGATCATAATTTTAAAAATTTTAAGAATTTCTGTTTAG
* * * ** * * *
452479 GTTTGAATTAAGCTTGATCCAATAGATTTGGAAATGCAAGTGATTTATTATACTTAAAAATATTT
1 GTTCGAATTAGGCTTGATCCAAAAGATTTGGGGATGCAAGTGACTTATTATACTTAGAAATGTTT
* * * *
452544 ATTGATCAAGTTGAATCATATCACAATTCTAAAAATTTTAAGAATTTCTGTTTAG
66 ATTGATCGAGTTGAATCAGATCATAATTTTAAAAATTTTAAGAATTTCTGTTTAG
*
452599 ATTCGAATT
1 GTTCGAATT
452608 GGAAGTGTGT
Statistics
Matches: 764, Mismatches: 74, Indels: 14
0.90 0.09 0.02
Matches are distributed among these distances:
117 95 0.12
118 112 0.15
119 16 0.02
120 539 0.71
121 2 0.00
ACGTcount: A:0.35, C:0.09, G:0.17, T:0.39
Consensus pattern (120 bp):
GTTCGAATTAGGCTTGATCCAAAAGATTTGGGGATGCAAGTGACTTATTATACTTAGAAATGTTT
ATTGATCGAGTTGAATCAGATCATAATTTTAAAAATTTTAAGAATTTCTGTTTAG
Found at i:452334 original size:357 final size:356
Alignment explanation
Indices: 451644--452607 Score: 1351
Period size: 357 Copynumber: 2.7 Consensus size: 356
451634 GAAATATTAT
* *
451644 GTTCGAATTTGGCTTGATCCAAAAGAGTTGGGGATGCAAGTGAC-TTGATATACTTAGAAATGTT
1 GTTCGAATTAGGCTTGATCCAAAAGA-TTTGGGATGCAAGTGACATT-ATAT--TTAGAAATGTT
* *
451708 TATTGATCGAGTTGAATTATATCATAATTTTAAAAATTTTAAGAA--TCTGTGTAGGTTCGAATT
62 TATTGATCGAGTTGAATTAGATCATAATTTTAAAAATTTTAAGAATTTCTGTTTAGGTTCGAATT
* * * * *
451771 AGGTTTGATCCAAAAGATTTGGGGATGCAAATGACTTAGTATACTTAGAATTGGTTATTGATCTA
127 AGGCTTGATCCAAAAGATTT-GGGATGCAAGTGACTTATTATACTTAGAATTGTTTATTGATCAA
*
451836 GTTGAATCAGATCATAATTTTAAAAATTTTAAGAATTTCTGTTTAGGTTCGAATTAGACTTGATC
191 GTTGAATCAAATCATAATTTTAAAAATTTTAAGAATTTCTGTTTAGGTTCGAATTAGACTTGATC
* *
451901 CAAAAGATTTGGGGATGCAAGTGACTTAGCATACTTAGAATTGTTTATTGATCGAGTTAAATCAG
256 CAAAAGATTTGGAGATGCAAGTGACTTAGCATACTTAGAAATGTTTATTGATCGAGTTAAATCAG
* * *
451966 ATCATAATTTTAAAAATTTTAAGAATTTTTGTTTAA
321 ATCACAATTTTAAAAATTTAAAAAATTTTTGTTTAA
*
452002 GTTCGAATTAGGCTTGATTCAAAAGATTTGGGATGCAAGTGACATTATATTTAGAAATGTTTATT
1 GTTCGAATTAGGCTTGATCCAAAAGATTTGGGATGCAAGTGACATTATATTTAGAAATGTTTATT
* *
452067 GATCGAGTTGAATCAGATCATAATTTTAAAAATTTTAAGAATTTCTATTTAGGTTCGAATTAGGC
66 GATCGAGTTGAATTAGATCATAATTTTAAAAATTTTAAGAATTTCTGTTTAGGTTCGAATTAGGC
*
452132 TTGATCCAAAAGATTTAGGGATGCAAGTGACTTATTATACTTAGAATTGTTTATTGATCGAGTTG
131 TTGATCCAAAAGATTT-GGGATGCAAGTGACTTATTATACTTAGAATTGTTTATTGATCAAGTTG
* * * *
452197 AATCAAATCATAATTTTAAAAACTTTAAAAATTTCTGTTTAGGTTCGAATTAGGCTTGATGCAAA
195 AATCAAATCATAATTTTAAAAATTTTAAGAATTTCTGTTTAGGTTCGAATTAGACTTGATCCAAA
** * *
452262 AGATTTGGAGATGCAAGTGACTTATTATACTTAGAAATGTTTATTGATCGAGTT-GATCCATATC
260 AGATTTGGAGATGCAAGTGACTTAGCATACTTAGAAATGTTTATTGATCGAGTTAAAT-CAGATC
*
452326 ACAATTTTAAAAATTTAAAAAATTTTTGTTTAG
324 ACAATTTTAAAAATTTAAAAAATTTTTGTTTAA
* * * * * *
452359 GTTCGAATTAAGCTTGATCCAAAAAATTTGGAGATGTAAGTGATTTATTATACTTAGAAATGTTA
1 GTTCGAATTAGGCTTGATCCAAAAGATTTGG-GATGCAAGTGA--CATTATATTTAGAAATGTTT
* * * * *
452424 ATTGATCGAGTTGAATTAGATTACAATTTTAAAAATTTTAAAAATTTCTGTTTAAGTTTGAATTA
63 ATTGATCGAGTTGAATTAGATCATAATTTTAAAAATTTTAAGAATTTCTGTTTAGGTTCGAATTA
* * * * * * *
452489 AGCTTGATCCAATAGATTTGGAAATGCAAGTGATTTATTATACTTAAAAATATTTATTGATCAAG
128 GGCTTGATCCAAAAGATTTGG-GATGCAAGTGACTTATTATACTTAGAATTGTTTATTGATCAAG
* * * *
452554 TTGAATCATATCACAATTCTAAAAATTTTAAGAATTTCTGTTTAGATTCGAATT
192 TTGAATCAAATCATAATTTTAAAAATTTTAAGAATTTCTGTTTAGGTTCGAATT
452608 GGAAGTGTGT
Statistics
Matches: 542, Mismatches: 56, Indels: 14
0.89 0.09 0.02
Matches are distributed among these distances:
355 54 0.10
356 2 0.00
357 271 0.50
358 36 0.07
359 2 0.00
360 177 0.33
ACGTcount: A:0.35, C:0.09, G:0.17, T:0.39
Consensus pattern (356 bp):
GTTCGAATTAGGCTTGATCCAAAAGATTTGGGATGCAAGTGACATTATATTTAGAAATGTTTATT
GATCGAGTTGAATTAGATCATAATTTTAAAAATTTTAAGAATTTCTGTTTAGGTTCGAATTAGGC
TTGATCCAAAAGATTTGGGATGCAAGTGACTTATTATACTTAGAATTGTTTATTGATCAAGTTGA
ATCAAATCATAATTTTAAAAATTTTAAGAATTTCTGTTTAGGTTCGAATTAGACTTGATCCAAAA
GATTTGGAGATGCAAGTGACTTAGCATACTTAGAAATGTTTATTGATCGAGTTAAATCAGATCAC
AATTTTAAAAATTTAAAAAATTTTTGTTTAA
Found at i:453360 original size:120 final size:119
Alignment explanation
Indices: 453125--453649 Score: 606
Period size: 120 Copynumber: 4.4 Consensus size: 119
453115 AAATTTTAAA
* * * *
453125 TTAAAAA-TTATGTTTAGGTTCGAATTAGGCTTGATCCAAAATATTTGGGGATGCAAGTGACTTA
1 TTAAAAATTTCTGTTTAGGTTCGAATTAGGCTTGAT-CAAAAGATTTGGAGATGTAAGTGACTTA
* * * * * *
453189 TTATAATTAGAAATGTTTATTGATCGAGTTGAATCATATCATAATTTTAAAAATT
65 TTACACTTAAAAATATTTATTGATCGAGTTGAATCAGATCACAATTTTAAAAATT
* * * *
453244 TAAAAAATTTTTGTTTAGGTTCGAATTAGGCTTGATACAAAAGATTTGGAGACGTAAGTGATTTA
1 TTAAAAATTTCTGTTTAGGTTCGAATTAGGCTTGAT-CAAAAGATTTGGAGATGTAAGTGACTTA
* * * * *
453309 TTACACTTAAAAATGTTAATTGATCGAGTTGAATTAGATTACAATTCTAAAAATT
65 TTACACTTAAAAATATTTATTGATCGAGTTGAATCAGATCACAATTTTAAAAATT
* * * * ** *
453364 TTAAAAATTTCTATTTAGGTTTGAATTAAGCTTGATCTAATAGATTTGG-GAATACAAGTGATTT
1 TTAAAAATTTCTGTTTAGGTTCGAATTAGGCTTGATC-AAAAGATTTGGAG-ATGTAAGTGACTT
* * *
453428 ATTACACTTAAAAATATTTATTGATCGAGTTGAATTATAGCACAATTTTAAAAATT
64 ATTACACTTAAAAATATTTATTGATCGAGTTGAATCAGATCACAATTTTAAAAATT
* *
453484 TTAAAAATTTCTGTTTAGGTTCAAATTGGGCTTGATCCAAAAGATTT-GAGGATGTAAGTGACTT
1 TTAAAAATTTCTGTTTAGGTTCGAATTAGGCTTGAT-CAAAAGATTTGGA-GATGTAAGTGACTT
* ** * *
453548 ATTATACTTGGAAATATTTATTGATCAAGTTGAATCAGATCATAATTTTAAAAATT
64 ATTACACTTAAAAATATTTATTGATCGAGTTGAATCAGATCACAATTTTAAAAATT
* * **
453604 TTAAGAATTTTTGTTTAGGTTCGAATTAAACTTGATCTAAAAGATT
1 TTAAAAATTTCTGTTTAGGTTCGAATTAGGCTTGATC-AAAAGATT
453650 GAATTTTATG
Statistics
Matches: 344, Mismatches: 55, Indels: 13
0.83 0.13 0.03
Matches are distributed among these distances:
119 10 0.03
120 332 0.97
121 2 0.01
ACGTcount: A:0.37, C:0.08, G:0.16, T:0.40
Consensus pattern (119 bp):
TTAAAAATTTCTGTTTAGGTTCGAATTAGGCTTGATCAAAAGATTTGGAGATGTAAGTGACTTAT
TACACTTAAAAATATTTATTGATCGAGTTGAATCAGATCACAATTTTAAAAATT
Done.