Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Scaffold1095
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 100126
ACGTcount: A:0.37, C:0.14, G:0.14, T:0.36
Found at i:434 original size:34 final size:36
Alignment explanation
Indices: 359--434 Score: 97
Period size: 33 Copynumber: 2.2 Consensus size: 36
349 TTTTTAAAAT
*
359 TTAATTAAATATCATTTTTATTTTATTAAAATAATAA
1 TTAA-TAAATATCATTTTTATTTTATAAAAATAATAA
396 -TAATAAATA-C-TTTTTATTTT-TAAAAATATATAA
1 TTAATAAATATCATTTTTATTTTATAAAAATA-ATAA
429 TTAATA
1 TTAATA
435 TTTTAATTTG
Statistics
Matches: 36, Mismatches: 1, Indels: 7
0.82 0.02 0.16
Matches are distributed among these distances:
32 7 0.19
33 14 0.39
34 6 0.17
35 6 0.17
36 3 0.08
ACGTcount: A:0.47, C:0.03, G:0.00, T:0.50
Consensus pattern (36 bp):
TTAATAAATATCATTTTTATTTTATAAAAATAATAA
Found at i:449 original size:30 final size:29
Alignment explanation
Indices: 391--449 Score: 75
Period size: 30 Copynumber: 2.0 Consensus size: 29
381 TTATTAAAAT
*
391 AATAATAATAAATACTTTTTATTTTTAAA
1 AATAATAATAAATACTTTTAATTTTTAAA
*
420 AATATATAATTAATA-TTTTAATTTGTTAAA
1 AATA-ATAATAAATACTTTTAATTT-TTAAA
450 TGTAATTTTT
Statistics
Matches: 26, Mismatches: 2, Indels: 3
0.84 0.06 0.10
Matches are distributed among these distances:
29 12 0.46
30 14 0.54
ACGTcount: A:0.47, C:0.02, G:0.02, T:0.49
Consensus pattern (29 bp):
AATAATAATAAATACTTTTAATTTTTAAA
Found at i:520 original size:50 final size:48
Alignment explanation
Indices: 466--617 Score: 124
Period size: 46 Copynumber: 3.2 Consensus size: 48
456 TTTTTTAAAC
*
466 TTAATTAAATATTTTTTAATTTTATTAAAAATAATAATAATAAACTATTT
1 TTAATTAAATAATTTTT-ATTTTATTAAAAATAATAATAATAAA-TATTT
516 TTAATT---TAATTTTTATTTTA--AAAAATAATTAAT-ATAAAT-TTT
1 TTAATTAAATAATTTTTATTTTATTAAAAATAA-TAATAATAAATATTT
* * * * *
558 TAAAATTAATTAAATTTT-TTTAATTAAAAATAATAATTAATATATTATTAT
1 T-TAATTAAATAATTTTTATTTTATTAAAAATAATAA-TAATA-AATATT-T
609 TT-ATTAAAT
1 TTAATTAAAT
618 TTTTAAAATT
Statistics
Matches: 83, Mismatches: 7, Indels: 25
0.72 0.06 0.22
Matches are distributed among these distances:
42 4 0.05
43 5 0.06
44 13 0.16
45 8 0.10
46 16 0.19
47 16 0.19
48 3 0.04
49 8 0.10
50 8 0.10
51 2 0.02
ACGTcount: A:0.48, C:0.01, G:0.00, T:0.51
Consensus pattern (48 bp):
TTAATTAAATAATTTTTATTTTATTAAAAATAATAATAATAAATATTT
Found at i:548 original size:23 final size:23
Alignment explanation
Indices: 521--598 Score: 59
Period size: 23 Copynumber: 3.2 Consensus size: 23
511 TATTTTTAAT
521 TTAATTTTTATTTTAAAAAATAA
1 TTAATTTTTATTTTAAAAAATAA
* ** * *
544 TTAATATAAATTTTTAAAATTAA
1 TTAATTTTTATTTTAAAAAATAA
567 TTAAATTTTT-TTAATTAAAAATAATAA
1 TT-AATTTTTATT--TT-AAAA-AATAA
594 TTAAT
1 TTAAT
599 ATATTATTAT
Statistics
Matches: 40, Mismatches: 10, Indels: 7
0.70 0.18 0.12
Matches are distributed among these distances:
23 22 0.55
24 4 0.10
25 2 0.05
26 6 0.15
27 6 0.15
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (23 bp):
TTAATTTTTATTTTAAAAAATAA
Found at i:548 original size:107 final size:106
Alignment explanation
Indices: 330--524 Score: 245
Period size: 107 Copynumber: 1.8 Consensus size: 106
320 ATGTTATTTT
*
330 TTAATTTATTAATGTAAAATTTTTAAAATTTAATTAAATATCATTTTTATTTTATTAAAATAATA
1 TTAATTTATTAATGTAAAATTTTTAAAACTTAATTAAATAT-ATTTTTATTTTATTAAAATAATA
* ** *
395 ATAATAAATACTTTTTATTTTTAAAAATATATAATTAATATT
65 ATAATAAATACTTTTTATATTTAAAAATATATAAAAAATATA
* * *
437 TTAATTTGTTAAATGT-AATTTTTTTAAACTTAATTAAATAT-TTTTTAATTTTATTAAAAATAA
1 TTAATTTATT-AATGTAAAATTTTTAAAACTTAATTAAATATATTTTT-ATTTTATT-AAAATAA
500 TAATAATAAACTA-TTTTTA-ATTTAA
63 TAATAATAAA-TACTTTTTATATTTAA
525 TTTTTATTTT
Statistics
Matches: 79, Mismatches: 5, Indels: 9
0.85 0.05 0.10
Matches are distributed among these distances:
105 5 0.06
106 13 0.16
107 54 0.68
108 7 0.09
ACGTcount: A:0.45, C:0.02, G:0.02, T:0.52
Consensus pattern (106 bp):
TTAATTTATTAATGTAAAATTTTTAAAACTTAATTAAATATATTTTTATTTTATTAAAATAATAA
TAATAAATACTTTTTATATTTAAAAATATATAAAAAATATA
Found at i:557 original size:41 final size:39
Alignment explanation
Indices: 480--560 Score: 94
Period size: 41 Copynumber: 2.0 Consensus size: 39
470 TTAAATATTT
480 TTTAATTTTATTAAAAATAATAATAATAAACTATTTTTAA
1 TTTAATTTTATTAAAAATAATAATAATAAAC-ATTTTTAA
*
520 TTTAATTTTTATTTTAAAA-AATAATTAATATAA-ATTTTTAA
1 TTTAA-TTTTA-TTAAAAATAATAA-TAATA-AACATTTTTAA
561 AATTAATTAA
Statistics
Matches: 36, Mismatches: 1, Indels: 7
0.82 0.02 0.16
Matches are distributed among these distances:
40 5 0.14
41 18 0.50
42 11 0.31
43 2 0.06
ACGTcount: A:0.48, C:0.01, G:0.00, T:0.51
Consensus pattern (39 bp):
TTTAATTTTATTAAAAATAATAATAATAAACATTTTTAA
Found at i:568 original size:42 final size:46
Alignment explanation
Indices: 478--568 Score: 111
Period size: 44 Copynumber: 2.0 Consensus size: 46
468 AATTAAATAT
* *
478 TTTTTAATTTTATTAAAAATAATAATAATAAACTATTTTTAATTTAA
1 TTTTTAATTTTA-TAAAAATAATAATAATAAACTATTTTAAAATTAA
525 TTTTT-ATTTTA-AAAAATAATTAAT-ATAAA-T-TTTTAAAATTAA
1 TTTTTAATTTTATAAAAATAA-TAATAATAAACTATTTTAAAATTAA
567 TT
1 TT
569 AAATTTTTTT
Statistics
Matches: 41, Mismatches: 2, Indels: 7
0.82 0.04 0.14
Matches are distributed among these distances:
42 12 0.29
43 1 0.02
44 13 0.32
45 4 0.10
46 6 0.15
47 5 0.12
ACGTcount: A:0.47, C:0.01, G:0.00, T:0.52
Consensus pattern (46 bp):
TTTTTAATTTTATAAAAATAATAATAATAAACTATTTTAAAATTAA
Found at i:582 original size:18 final size:19
Alignment explanation
Indices: 540--584 Score: 65
Period size: 18 Copynumber: 2.4 Consensus size: 19
530 ATTTTAAAAA
540 ATAATTAATATAAATTTTT
1 ATAATTAATATAAATTTTT
*
559 AAAATTAAT-TAAATTTTT
1 ATAATTAATATAAATTTTT
*
577 TTAATTAA
1 ATAATTAA
585 AAATAATAAT
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
18 15 0.65
19 8 0.35
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (19 bp):
ATAATTAATATAAATTTTT
Found at i:2958 original size:29 final size:29
Alignment explanation
Indices: 2894--2963 Score: 74
Period size: 29 Copynumber: 2.4 Consensus size: 29
2884 AGTTTATCAC
* *
2894 GTAATATGGTAAATTAACTTATATTTAGA
1 GTAATATGGTAAATTAACTAAAATTTAGA
*
2923 GTTATATGGTAAATTATAC-AAAATTTAGCA
1 GTAATATGGTAAATTA-ACTAAAATTTAG-A
2953 G-AATAT-GTAAA
1 GTAATATGGTAAA
2964 GTAATTTTTG
Statistics
Matches: 35, Mismatches: 4, Indels: 5
0.80 0.09 0.11
Matches are distributed among these distances:
28 5 0.14
29 26 0.74
30 4 0.11
ACGTcount: A:0.44, C:0.04, G:0.14, T:0.37
Consensus pattern (29 bp):
GTAATATGGTAAATTAACTAAAATTTAGA
Found at i:4034 original size:32 final size:33
Alignment explanation
Indices: 3992--4068 Score: 84
Period size: 32 Copynumber: 2.3 Consensus size: 33
3982 TAAAATGTTA
3992 TATATTTATATAAATTTTAACACATTAATA-ATT
1 TATA-TTATATAAATTTTAACACATTAATATATT
* * * *
4025 TATATTATATATATTTTGACATATTTATATATT
1 TATATTATATAAATTTTAACACATTAATATATT
*
4058 TAGTATCATAT
1 TA-TATTATAT
4069 TATTGCTATT
Statistics
Matches: 37, Mismatches: 5, Indels: 3
0.82 0.11 0.07
Matches are distributed among these distances:
32 21 0.57
33 9 0.24
34 7 0.19
ACGTcount: A:0.40, C:0.05, G:0.03, T:0.52
Consensus pattern (33 bp):
TATATTATATAAATTTTAACACATTAATATATT
Found at i:4067 original size:20 final size:19
Alignment explanation
Indices: 4026--4071 Score: 58
Period size: 18 Copynumber: 2.4 Consensus size: 19
4016 TTAATAATTT
*
4026 ATATTATATATATTTTGAC
1 ATATTATATATATTTAGAC
4045 ATATT-TATATATTTAGTATC
1 ATATTATATATATTTAG-A-C
4065 ATATTAT
1 ATATTAT
4072 TGCTATTGTT
Statistics
Matches: 23, Mismatches: 1, Indels: 4
0.82 0.04 0.14
Matches are distributed among these distances:
18 10 0.43
19 6 0.26
20 6 0.26
21 1 0.04
ACGTcount: A:0.37, C:0.04, G:0.04, T:0.54
Consensus pattern (19 bp):
ATATTATATATATTTAGAC
Found at i:15909 original size:29 final size:31
Alignment explanation
Indices: 15855--15914 Score: 72
Period size: 30 Copynumber: 2.0 Consensus size: 31
15845 TAGTTTATAC
15855 ATTTAATTTTTTATTATATCAAAAA-TAAAAT
1 ATTTAATTTTTTATTATA-CAAAAATTAAAAT
*
15886 ATTT-ATTTTTATATTATA-ATAAATTAAAA
1 ATTTAATTTTT-TATTATACAAAAATTAAAA
15915 ATAAAATTGT
Statistics
Matches: 26, Mismatches: 1, Indels: 5
0.81 0.03 0.16
Matches are distributed among these distances:
29 4 0.15
30 11 0.42
31 11 0.42
ACGTcount: A:0.48, C:0.02, G:0.00, T:0.50
Consensus pattern (31 bp):
ATTTAATTTTTTATTATACAAAAATTAAAAT
Found at i:16177 original size:16 final size:17
Alignment explanation
Indices: 16156--16190 Score: 54
Period size: 16 Copynumber: 2.1 Consensus size: 17
16146 ATTTATTTAG
16156 AAAAAAATCAT-TTTTT
1 AAAAAAATCATATTTTT
*
16172 AAAAAATTCATATTTTT
1 AAAAAAATCATATTTTT
16189 AA
1 AA
16191 TATTTATTTC
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
16 10 0.59
17 7 0.41
ACGTcount: A:0.51, C:0.06, G:0.00, T:0.43
Consensus pattern (17 bp):
AAAAAAATCATATTTTT
Found at i:16781 original size:20 final size:20
Alignment explanation
Indices: 16734--16814 Score: 73
Period size: 20 Copynumber: 4.2 Consensus size: 20
16724 ATAAAAAATT
16734 TATTTTAAAAAAA-ATAAAA
1 TATTTTAAAAAAATATAAAA
*
16753 -ATATGTAAAAAAATATAAAA
1 TAT-TTTAAAAAAATATAAAA
*
16773 TATTTTAAATAAAAT-TATAA
1 TATTTTAAA-AAAATATAAAA
*
16793 TA--TTAAAAATATATAAATA
1 TATTTTAAAAAAATATAAA-A
16812 TAT
1 TAT
16815 AAATTATCAC
Statistics
Matches: 50, Mismatches: 5, Indels: 13
0.74 0.07 0.19
Matches are distributed among these distances:
17 4 0.08
18 10 0.20
19 12 0.24
20 17 0.34
21 7 0.14
ACGTcount: A:0.63, C:0.00, G:0.01, T:0.36
Consensus pattern (20 bp):
TATTTTAAAAAAATATAAAA
Found at i:16781 original size:39 final size:39
Alignment explanation
Indices: 16729--16814 Score: 111
Period size: 39 Copynumber: 2.2 Consensus size: 39
16719 TTAATATAAA
*
16729 AAATTTATTTTAAAAAAAATAAAAATATGTAAAAAAATAT
1 AAATATATTTTAAAAAAAATAAAAATAT-TAAAAAAATAT
* * * *
16769 AAA-ATATTTTAAATAAAATTATAATATTAAAAATATAT
1 AAATATATTTTAAAAAAAATAAAAATATTAAAAAAATAT
16807 AAATATAT
1 AAATATAT
16815 AAATTATCAC
Statistics
Matches: 40, Mismatches: 5, Indels: 3
0.83 0.10 0.06
Matches are distributed among these distances:
38 13 0.32
39 24 0.60
40 3 0.08
ACGTcount: A:0.63, C:0.00, G:0.01, T:0.36
Consensus pattern (39 bp):
AAATATATTTTAAAAAAAATAAAAATATTAAAAAAATAT
Found at i:16862 original size:19 final size:19
Alignment explanation
Indices: 16838--16874 Score: 65
Period size: 19 Copynumber: 1.9 Consensus size: 19
16828 TAACTGATAT
16838 AATTTATTCAAATTTAAAA
1 AATTTATTCAAATTTAAAA
*
16857 AATTTATTTAAATTTAAA
1 AATTTATTCAAATTTAAA
16875 TTGACTTAAT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.51, C:0.03, G:0.00, T:0.46
Consensus pattern (19 bp):
AATTTATTCAAATTTAAAA
Found at i:17728 original size:19 final size:18
Alignment explanation
Indices: 17687--17729 Score: 52
Period size: 18 Copynumber: 2.3 Consensus size: 18
17677 TTTTAAATTA
17687 ATTAAATTTATTATAAAT
1 ATTAAATTTATTATAAAT
17705 ATTAATATTT-TTATATAAT
1 ATTAA-ATTTATTATA-AAT
*
17724 GTTAAA
1 ATTAAA
17730 AATCATTAAA
Statistics
Matches: 22, Mismatches: 1, Indels: 4
0.81 0.04 0.15
Matches are distributed among these distances:
18 11 0.50
19 11 0.50
ACGTcount: A:0.47, C:0.00, G:0.02, T:0.51
Consensus pattern (18 bp):
ATTAAATTTATTATAAAT
Found at i:18745 original size:21 final size:21
Alignment explanation
Indices: 18698--18762 Score: 73
Period size: 21 Copynumber: 3.1 Consensus size: 21
18688 TTTTTTTCTC
18698 TATTTTACTAATTAAAA-TAT-
1 TATTTTA-TAATTAAAATTATA
18718 TATTTT-TATATTAATAATTATA
1 TATTTTATA-ATTAA-AATTATA
*
18740 TATTTTATAATTAAATTTATA
1 TATTTTATAATTAAAATTATA
18761 TA
1 TA
18763 AAAAAAAATA
Statistics
Matches: 39, Mismatches: 1, Indels: 9
0.80 0.02 0.18
Matches are distributed among these distances:
18 2 0.05
19 5 0.13
20 8 0.21
21 11 0.28
22 11 0.28
23 2 0.05
ACGTcount: A:0.43, C:0.02, G:0.00, T:0.55
Consensus pattern (21 bp):
TATTTTATAATTAAAATTATA
Found at i:18983 original size:18 final size:17
Alignment explanation
Indices: 18958--18992 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
18948 TATAAATATG
*
18958 TAAAAATTTATATAATA
1 TAAAAATTAATATAATA
18975 TAAATAATTAATATAATA
1 TAAA-AATTAATATAATA
18993 AATTTACATA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 4 0.25
18 12 0.75
ACGTcount: A:0.60, C:0.00, G:0.00, T:0.40
Consensus pattern (17 bp):
TAAAAATTAATATAATA
Found at i:19007 original size:32 final size:31
Alignment explanation
Indices: 18961--19021 Score: 88
Period size: 32 Copynumber: 1.9 Consensus size: 31
18951 AAATATGTAA
*
18961 AAATTTATATAATATA-AATAATTAATATAAT
1 AAATTTACATAATATATAAT-ATTAATATAAT
18992 AAATTTACATAAATATATAATATTAATATA
1 AAATTTACAT-AATATATAATATTAATATA
19022 CGAATATAAT
Statistics
Matches: 27, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
31 9 0.33
32 15 0.56
33 3 0.11
ACGTcount: A:0.57, C:0.02, G:0.00, T:0.41
Consensus pattern (31 bp):
AAATTTACATAATATATAATATTAATATAAT
Found at i:19046 original size:19 final size:19
Alignment explanation
Indices: 18944--19047 Score: 60
Period size: 19 Copynumber: 5.7 Consensus size: 19
18934 AAATAATATT
*
18944 AATATATAAATAT-GTAAA
1 AATATATAAATATAATAAA
*
18962 AAT-T-T--ATATAATATA
1 AATATATAAATATAATAAA
*
18977 AATA-ATTAATATAATAAA
1 AATATATAAATATAATAAA
** *
18995 TTTACATAAATAT-ATAATA
1 AATATATAAATATAATAA-A
**
19014 TTAATATACGAATATAATAAA
1 --AATATATAAATATAATAAA
19035 AATATATAAATAT
1 AATATATAAATAT
19048 TTTTATTAGC
Statistics
Matches: 63, Mismatches: 13, Indels: 19
0.66 0.14 0.20
Matches are distributed among these distances:
14 4 0.06
15 6 0.10
16 2 0.03
17 1 0.02
18 18 0.29
19 19 0.30
21 9 0.14
22 4 0.06
ACGTcount: A:0.59, C:0.02, G:0.02, T:0.38
Consensus pattern (19 bp):
AATATATAAATATAATAAA
Found at i:19495 original size:19 final size:18
Alignment explanation
Indices: 19460--19493 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
19450 ATTTTTAATA
19460 AAAGATCTATTTCATATT
1 AAAGATCTATTTCATATT
*
19478 AAAGATTTATTT-ATAT
1 AAAGATCTATTTCATAT
19494 ATGAATAAAG
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 4 0.27
18 11 0.73
ACGTcount: A:0.41, C:0.06, G:0.06, T:0.47
Consensus pattern (18 bp):
AAAGATCTATTTCATATT
Found at i:19848 original size:10 final size:10
Alignment explanation
Indices: 19835--19905 Score: 51
Period size: 10 Copynumber: 7.2 Consensus size: 10
19825 ATTTTAATAT
19835 AAATATTATA
1 AAATATTATA
19845 AAATATT-TA
1 AAATATTATA
19854 AATATATTATTA
1 AA-ATATTA-TA
*
19866 AAAT-TTATT
1 AAATATTATA
**
19875 TTAT-TTATA
1 AAATATTATA
*
19884 TAAATATTATC
1 -AAATATTATA
19895 AAATATT-TA
1 AAATATTATA
19904 AA
1 AA
19906 TATAACATTC
Statistics
Matches: 48, Mismatches: 8, Indels: 11
0.72 0.12 0.16
Matches are distributed among these distances:
9 14 0.29
10 24 0.50
11 6 0.12
12 4 0.08
ACGTcount: A:0.51, C:0.01, G:0.00, T:0.48
Consensus pattern (10 bp):
AAATATTATA
Found at i:19851 original size:24 final size:24
Alignment explanation
Indices: 19823--19910 Score: 81
Period size: 24 Copynumber: 3.6 Consensus size: 24
19813 GTTTAAATTT
*
19823 ATATTTTAATATAAATATTATAAA
1 ATATTTAAATATAAATATTATAAA
*
19847 ATATTTAAATAT-ATTATTA-AAA
1 ATATTTAAATATAAATATTATAAA
* * *
19869 TTTATTTTATTTATATAAATATTATCAA
1 -ATA-TTTA--AATATAAATATTATAAA
19897 ATATTTAAATATAA
1 ATATTTAAATATAA
19911 CATTCACTTA
Statistics
Matches: 50, Mismatches: 8, Indels: 12
0.71 0.11 0.17
Matches are distributed among these distances:
22 3 0.06
23 8 0.16
24 21 0.42
26 8 0.16
27 8 0.16
28 2 0.04
ACGTcount: A:0.50, C:0.01, G:0.00, T:0.49
Consensus pattern (24 bp):
ATATTTAAATATAAATATTATAAA
Found at i:20010 original size:7 final size:8
Alignment explanation
Indices: 19990--20014 Score: 50
Period size: 8 Copynumber: 3.1 Consensus size: 8
19980 ACCTTATTAC
19990 TAAAAATT
1 TAAAAATT
19998 TAAAAATT
1 TAAAAATT
20006 TAAAAATT
1 TAAAAATT
20014 T
1 T
20015 TAAATATTCA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 17 1.00
ACGTcount: A:0.60, C:0.00, G:0.00, T:0.40
Consensus pattern (8 bp):
TAAAAATT
Found at i:20904 original size:11 final size:10
Alignment explanation
Indices: 20888--20926 Score: 53
Period size: 11 Copynumber: 3.8 Consensus size: 10
20878 GGAGATCAGC
20888 TTTTTTGATAA
1 TTTTTT-ATAA
20899 TTTTTTATTAA
1 TTTTTTA-TAA
20910 TTTTTTAT-A
1 TTTTTTATAA
20919 TTTTTTAT
1 TTTTTTAT
20927 TAGTATTGTT
Statistics
Matches: 27, Mismatches: 0, Indels: 4
0.87 0.00 0.13
Matches are distributed among these distances:
9 9 0.33
10 2 0.07
11 16 0.59
ACGTcount: A:0.23, C:0.00, G:0.03, T:0.74
Consensus pattern (10 bp):
TTTTTTATAA
Found at i:20921 original size:20 final size:22
Alignment explanation
Indices: 20888--20928 Score: 68
Period size: 20 Copynumber: 2.0 Consensus size: 22
20878 GGAGATCAGC
20888 TTTTTTGATAATTTTTTATTAA
1 TTTTTTGATAATTTTTTATTAA
20910 TTTTTT-AT-ATTTTTTATTA
1 TTTTTTGATAATTTTTTATTA
20929 GTATTGTTTG
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
20 11 0.58
21 2 0.11
22 6 0.32
ACGTcount: A:0.24, C:0.00, G:0.02, T:0.73
Consensus pattern (22 bp):
TTTTTTGATAATTTTTTATTAA
Found at i:22001 original size:2 final size:2
Alignment explanation
Indices: 21994--22023 Score: 60
Period size: 2 Copynumber: 15.0 Consensus size: 2
21984 ATTGAAACCA
21994 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
22024 GAAAATCCAG
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 28 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:22422 original size:9 final size:9
Alignment explanation
Indices: 22410--22460 Score: 59
Period size: 9 Copynumber: 5.8 Consensus size: 9
22400 TATATATTTT
*
22410 ATAAAATTA
1 ATAAAAATA
22419 ATAAAAATA
1 ATAAAAATA
* *
22428 TTTAAAATA
1 ATAAAAATA
22437 ATAAAAATA
1 ATAAAAATA
*
22446 ATAAAATTA
1 ATAAAAATA
22455 A-AAAAA
1 ATAAAAA
22461 GCTGCGACAA
Statistics
Matches: 35, Mismatches: 7, Indels: 1
0.81 0.16 0.02
Matches are distributed among these distances:
8 4 0.11
9 31 0.89
ACGTcount: A:0.73, C:0.00, G:0.00, T:0.27
Consensus pattern (9 bp):
ATAAAAATA
Found at i:22460 original size:18 final size:19
Alignment explanation
Indices: 22409--22460 Score: 74
Period size: 18 Copynumber: 2.9 Consensus size: 19
22399 ATATATATTT
22409 TATAAAATTAATAAAAATA
1 TATAAAATTAATAAAAATA
*
22428 TTTAAAA-TAATAAAAATA
1 TATAAAATTAATAAAAATA
22446 -ATAAAATTAA-AAAAA
1 TATAAAATTAATAAAAA
22461 GCTGCGACAA
Statistics
Matches: 30, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
17 10 0.33
18 14 0.47
19 6 0.20
ACGTcount: A:0.71, C:0.00, G:0.00, T:0.29
Consensus pattern (19 bp):
TATAAAATTAATAAAAATA
Found at i:23446 original size:79 final size:82
Alignment explanation
Indices: 23349--23498 Score: 191
Period size: 79 Copynumber: 1.9 Consensus size: 82
23339 TTGTTTATTT
* * ** *
23349 TTATTAAATTATTAAAATAATAATTAAATTTAATATTTA-TTTTTCAATAAATTTATAAAATT-T
1 TTATCAAATTATTAAAATAATAATCAAATTTAATATTTAGCATTT-AATAAATTGATAAAATTCT
23412 TATCAATTTATAATTTAA
65 TATCAATTTATAATTTAA
* * *
23430 TTATCAAA-TATT-AAATAATGATCAAATTTAGTATTTAGCATTTAATTAATTGATAAAATTCTT
1 TTATCAAATTATTAAAATAATAATCAAATTTAATATTTAGCATTTAATAAATTGATAAAATTCTT
23493 ATCAAT
66 ATCAAT
23499 GTATGTTTTA
Statistics
Matches: 59, Mismatches: 8, Indels: 5
0.82 0.11 0.07
Matches are distributed among these distances:
79 37 0.63
80 15 0.25
81 7 0.12
ACGTcount: A:0.45, C:0.05, G:0.03, T:0.47
Consensus pattern (82 bp):
TTATCAAATTATTAAAATAATAATCAAATTTAATATTTAGCATTTAATAAATTGATAAAATTCTT
ATCAATTTATAATTTAA
Found at i:23893 original size:16 final size:16
Alignment explanation
Indices: 23874--23927 Score: 56
Period size: 16 Copynumber: 3.4 Consensus size: 16
23864 TTGATTTGAA
23874 TATATATTTTAAAATT
1 TATATATTTTAAAATT
*** *
23890 TATATAAGATAAATTAT
1 TATATATTTTAAAAT-T
23907 TA-ATATTTTAAAATT
1 TATATATTTTAAAATT
23922 TATATA
1 TATATA
23928 AATATAAAAT
Statistics
Matches: 28, Mismatches: 8, Indels: 4
0.70 0.20 0.10
Matches are distributed among these distances:
15 3 0.11
16 22 0.79
17 3 0.11
ACGTcount: A:0.48, C:0.00, G:0.02, T:0.50
Consensus pattern (16 bp):
TATATATTTTAAAATT
Found at i:23938 original size:27 final size:31
Alignment explanation
Indices: 23877--23945 Score: 92
Period size: 32 Copynumber: 2.3 Consensus size: 31
23867 ATTTGAATAT
*
23877 ATATTTTAAAATTTATATAAGATAAATTATTA
1 ATATTTTAAAATTTATATAAGAT-AATTATAA
23909 ATATTTTAAAATTTATATAA-AT-A-TA-AA
1 ATATTTTAAAATTTATATAAGATAATTATAA
23936 ATATTTTAAA
1 ATATTTTAAA
23946 TATGATTATA
Statistics
Matches: 36, Mismatches: 1, Indels: 5
0.86 0.02 0.12
Matches are distributed among these distances:
27 11 0.31
28 2 0.06
29 1 0.03
31 2 0.06
32 20 0.56
ACGTcount: A:0.52, C:0.00, G:0.01, T:0.46
Consensus pattern (31 bp):
ATATTTTAAAATTTATATAAGATAATTATAA
Found at i:27848 original size:3 final size:3
Alignment explanation
Indices: 27833--27868 Score: 54
Period size: 3 Copynumber: 12.0 Consensus size: 3
27823 TCCTTTTTTA
* *
27833 AAT AAT AAC AAT AAT AAT AAT AGT AAT AAT AAT AAT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
27869 TTTTACAATT
Statistics
Matches: 29, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
3 29 1.00
ACGTcount: A:0.64, C:0.03, G:0.03, T:0.31
Consensus pattern (3 bp):
AAT
Found at i:29363 original size:17 final size:17
Alignment explanation
Indices: 29336--29374 Score: 53
Period size: 17 Copynumber: 2.4 Consensus size: 17
29326 GATTTTTAAA
29336 TATTT-AAATTTAAAAT
1 TATTTAAAATTTAAAAT
* *
29352 TATTTAAAATTTGAATT
1 TATTTAAAATTTAAAAT
29369 TATTTA
1 TATTTA
29375 TTATTAGTTT
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
16 5 0.25
17 15 0.75
ACGTcount: A:0.44, C:0.00, G:0.03, T:0.54
Consensus pattern (17 bp):
TATTTAAAATTTAAAAT
Found at i:30000 original size:50 final size:51
Alignment explanation
Indices: 29937--30146 Score: 234
Period size: 50 Copynumber: 4.2 Consensus size: 51
29927 AGTTGCTTAG
*
29937 AGTCAACAATTACGACCACCTCTCTT-TATTGTCAAAGATTGGTGAAGAAT
1 AGTCAACAATTACGACCACCTCTCTTCTATTGTCAAAGATTGGTGAAAAAT
* * * * *
29987 AGTTAACAATTACGGCCACCTCTC-TCAATTTTCAAATG-TTGGTGAAGAAT
1 AGTCAACAATTACGACCACCTCTCTTCTATTGTCAAA-GATTGGTGAAAAAT
* * * *
30037 AATCAACAATTACGGCCACCTCT-TTCTATTGTCAAAGGTTGATGAAAAAT
1 AGTCAACAATTACGACCACCTCTCTTCTATTGTCAAAGATTGGTGAAAAAT
* * * *
30087 AGTCAACAATTAC-AGCTACCT-TTTTCTATTATCAAAGATTGGTAAAAAAT
1 AGTCAACAATTACGA-CCACCTCTCTTCTATTGTCAAAGATTGGTGAAAAAT
30137 AGTCAACAAT
1 AGTCAACAAT
30147 AGCAACACCT
Statistics
Matches: 137, Mismatches: 17, Indels: 12
0.83 0.10 0.07
Matches are distributed among these distances:
49 3 0.02
50 133 0.97
51 1 0.01
ACGTcount: A:0.36, C:0.19, G:0.14, T:0.31
Consensus pattern (51 bp):
AGTCAACAATTACGACCACCTCTCTTCTATTGTCAAAGATTGGTGAAAAAT
Found at i:30122 original size:100 final size:100
Alignment explanation
Indices: 29939--30146 Score: 258
Period size: 100 Copynumber: 2.1 Consensus size: 100
29929 TTGCTTAGAG
* * * *
29939 TCAACAATTACGACCACCTCTCTTTATTGTCAAAGATTGGTGAAGAATAGTTAACAATTACGGCC
1 TCAACAATTACGACCACCTCTCTTTATTGTCAAAGATTGATGAAAAATAGTCAACAATTACAGCC
* * *
30004 ACCTCTCTCAATTTTCAAATG-TTGGTGAAGAATAA
66 ACCTCTCTCAATTATCAAA-GATTGGTAAAAAATAA
* *
30039 TCAACAATTACGGCCACCTCT-TTCTATTGTCAAAGGTTGATGAAAAATAGTCAACAATTACAGC
1 TCAACAATTACGACCACCTCTCTT-TATTGTCAAAGATTGATGAAAAATAGTCAACAATTACAGC
* * * * *
30103 TACCTTTTTCTATTATCAAAGATTGGTAAAAAATAG
65 CACCTCTCTCAATTATCAAAGATTGGTAAAAAATAA
30139 TCAACAAT
1 TCAACAAT
30147 AGCAACACCT
Statistics
Matches: 92, Mismatches: 14, Indels: 4
0.84 0.13 0.04
Matches are distributed among these distances:
99 3 0.03
100 89 0.97
ACGTcount: A:0.36, C:0.19, G:0.13, T:0.31
Consensus pattern (100 bp):
TCAACAATTACGACCACCTCTCTTTATTGTCAAAGATTGATGAAAAATAGTCAACAATTACAGCC
ACCTCTCTCAATTATCAAAGATTGGTAAAAAATAA
Found at i:33586 original size:26 final size:26
Alignment explanation
Indices: 33545--33605 Score: 77
Period size: 26 Copynumber: 2.3 Consensus size: 26
33535 GCCTTAATTG
* * *
33545 TGACTCCTATTCTGGCCATGTTCCGT
1 TGACTCCCATTCTGGCCACGTTCCAT
*
33571 TGACTCCCATTTTGGCCACGTTCCAT
1 TGACTCCCATTCTGGCCACGTTCCAT
33597 TGATCTCCC
1 TGA-CTCCC
33606 TCTTGTCATA
Statistics
Matches: 30, Mismatches: 4, Indels: 1
0.86 0.11 0.03
Matches are distributed among these distances:
26 25 0.83
27 5 0.17
ACGTcount: A:0.13, C:0.34, G:0.16, T:0.36
Consensus pattern (26 bp):
TGACTCCCATTCTGGCCACGTTCCAT
Found at i:34609 original size:50 final size:50
Alignment explanation
Indices: 34548--34706 Score: 237
Period size: 50 Copynumber: 3.2 Consensus size: 50
34538 AGTTGCTTAG
* * *
34548 AGTCAATAATTACGATCACCTCTCTCTATTGTCAAAGATTAGTGAAGAAT
1 AGTCAACAATTACGACCACCTCTCTCTATTGTCAAAGGTTAGTGAAGAAT
* *
34598 AGTCAACAATTACGACCACCTCTCTCTATTGTCAAAGGTTGGTGAAAAAT
1 AGTCAACAATTACGACCACCTCTCTCTATTGTCAAAGGTTAGTGAAGAAT
* * * *
34648 AGTCAATAATTACGACCACCTCTCTCGATTGTCAAAGGTTTGTAAAGAAT
1 AGTCAACAATTACGACCACCTCTCTCTATTGTCAAAGGTTAGTGAAGAAT
34698 AGTCAACAA
1 AGTCAACAA
34707 ATAACAACAC
Statistics
Matches: 98, Mismatches: 11, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
50 98 1.00
ACGTcount: A:0.36, C:0.20, G:0.15, T:0.29
Consensus pattern (50 bp):
AGTCAACAATTACGACCACCTCTCTCTATTGTCAAAGGTTAGTGAAGAAT
Found at i:35717 original size:24 final size:27
Alignment explanation
Indices: 35655--35714 Score: 120
Period size: 27 Copynumber: 2.2 Consensus size: 27
35645 AATCACGTTG
35655 TATTATTATGATTGTAGATATAGTGAA
1 TATTATTATGATTGTAGATATAGTGAA
35682 TATTATTATGATTGTAGATATAGTGAA
1 TATTATTATGATTGTAGATATAGTGAA
35709 TATTAT
1 TATTAT
35715 GATAAATATC
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 33 1.00
ACGTcount: A:0.37, C:0.00, G:0.17, T:0.47
Consensus pattern (27 bp):
TATTATTATGATTGTAGATATAGTGAA
Found at i:35837 original size:39 final size:39
Alignment explanation
Indices: 35783--35858 Score: 152
Period size: 39 Copynumber: 1.9 Consensus size: 39
35773 ATGGGAAGAA
35783 CATCGTTTGTTATTTAAATTAAAATTACCACAAATTACC
1 CATCGTTTGTTATTTAAATTAAAATTACCACAAATTACC
35822 CATCGTTTGTTATTTAAATTAAAATTACCACAAATTA
1 CATCGTTTGTTATTTAAATTAAAATTACCACAAATTA
35859 AGCATAGAAT
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
39 37 1.00
ACGTcount: A:0.39, C:0.16, G:0.05, T:0.39
Consensus pattern (39 bp):
CATCGTTTGTTATTTAAATTAAAATTACCACAAATTACC
Found at i:37277 original size:15 final size:15
Alignment explanation
Indices: 37245--37287 Score: 54
Period size: 15 Copynumber: 2.9 Consensus size: 15
37235 TATAATTATT
37245 TTTAAAAAA-TAACA
1 TTTAAAAAATTAACA
37259 TTTAACAAAATTAAC-
1 TTTAA-AAAATTAACA
37274 TTTATAAAAATTAA
1 TTTA-AAAAATTAA
37288 TATAATATTC
Statistics
Matches: 26, Mismatches: 0, Indels: 5
0.84 0.00 0.16
Matches are distributed among these distances:
14 5 0.19
15 16 0.62
16 5 0.19
ACGTcount: A:0.58, C:0.07, G:0.00, T:0.35
Consensus pattern (15 bp):
TTTAAAAAATTAACA
Found at i:39318 original size:23 final size:22
Alignment explanation
Indices: 39270--39341 Score: 63
Period size: 23 Copynumber: 3.0 Consensus size: 22
39260 CACTGACATA
* * *
39270 TAAATATAAAAATATAATACATT
1 TAAATATAATAATATATTATA-T
39293 TAAATATAATTAATATATTATAT
1 TAAATATAA-TAATATATTATAT
*
39316 TAATATTTAATAATTTATATTATAT
1 TAA-ATATAATAA--TATATTATAT
39341 T
1 T
39342 TATGTGCCTG
Statistics
Matches: 41, Mismatches: 4, Indels: 6
0.80 0.08 0.12
Matches are distributed among these distances:
23 16 0.39
24 14 0.34
25 11 0.27
ACGTcount: A:0.51, C:0.01, G:0.00, T:0.47
Consensus pattern (22 bp):
TAAATATAATAATATATTATAT
Found at i:39342 original size:19 final size:19
Alignment explanation
Indices: 39284--39343 Score: 61
Period size: 20 Copynumber: 3.1 Consensus size: 19
39274 TATAAAAATA
* *
39284 TAATACATTTA-AATATAAT
1 TAATA-ATTTATATTATATT
39303 TAAT-ATATTATATTAATATT
1 TAATAAT-TTATATT-ATATT
39323 TAATAATTTATATTATATT
1 TAATAATTTATATTATATT
39342 TA
1 TA
39344 TGTGCCTGAA
Statistics
Matches: 35, Mismatches: 2, Indels: 8
0.78 0.04 0.18
Matches are distributed among these distances:
17 2 0.06
18 3 0.09
19 13 0.37
20 15 0.43
21 2 0.06
ACGTcount: A:0.47, C:0.02, G:0.00, T:0.52
Consensus pattern (19 bp):
TAATAATTTATATTATATT
Found at i:41549 original size:21 final size:22
Alignment explanation
Indices: 41523--41563 Score: 66
Period size: 22 Copynumber: 1.9 Consensus size: 22
41513 AGAACAAAAT
41523 AAAAATA-TCTATTATAATCTC
1 AAAAATATTCTATTATAATCTC
*
41544 AAAAATATTTTATTATAATC
1 AAAAATATTCTATTATAATC
41564 GTATCTTAAT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
21 7 0.39
22 11 0.61
ACGTcount: A:0.49, C:0.10, G:0.00, T:0.41
Consensus pattern (22 bp):
AAAAATATTCTATTATAATCTC
Found at i:44613 original size:2 final size:2
Alignment explanation
Indices: 44606--44631 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
44596 ACACTTTTAT
44606 TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA
44632 GTTTTAATGA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:45061 original size:2 final size:2
Alignment explanation
Indices: 45054--45087 Score: 68
Period size: 2 Copynumber: 17.0 Consensus size: 2
45044 TATAATTTTC
45054 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
45088 GTTCATGCTT
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 32 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:46505 original size:2 final size:2
Alignment explanation
Indices: 46498--46527 Score: 60
Period size: 2 Copynumber: 15.0 Consensus size: 2
46488 TGCAACAATG
46498 GT GT GT GT GT GT GT GT GT GT GT GT GT GT GT
1 GT GT GT GT GT GT GT GT GT GT GT GT GT GT GT
46528 AATATATAGA
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 28 1.00
ACGTcount: A:0.00, C:0.00, G:0.50, T:0.50
Consensus pattern (2 bp):
GT
Found at i:47360 original size:15 final size:15
Alignment explanation
Indices: 47336--47373 Score: 60
Period size: 15 Copynumber: 2.6 Consensus size: 15
47326 GATTTGAGAA
47336 TAAATT-ATTTAAAT
1 TAAATTAATTTAAAT
*
47350 TAAATTAATTTAATT
1 TAAATTAATTTAAAT
47365 TAAATTAAT
1 TAAATTAAT
47374 AATTAAATAA
Statistics
Matches: 22, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
14 6 0.27
15 16 0.73
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (15 bp):
TAAATTAATTTAAAT
Found at i:47362 original size:10 final size:10
Alignment explanation
Indices: 47336--47373 Score: 51
Period size: 10 Copynumber: 3.9 Consensus size: 10
47326 GATTTGAGAA
47336 TAAATT-ATT
1 TAAATTAATT
*
47345 TAAATTAAAT
1 TAAATTAATT
*
47355 TAATTTAATT
1 TAAATTAATT
47365 TAAATTAAT
1 TAAATTAAT
47374 AATTAAATAA
Statistics
Matches: 24, Mismatches: 4, Indels: 1
0.83 0.14 0.03
Matches are distributed among these distances:
9 6 0.25
10 18 0.75
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (10 bp):
TAAATTAATT
Found at i:48017 original size:2 final size:2
Alignment explanation
Indices: 48010--48037 Score: 56
Period size: 2 Copynumber: 14.0 Consensus size: 2
48000 AGAGTCTAAT
48010 TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA
48038 AGCCACAATA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:50493 original size:13 final size:13
Alignment explanation
Indices: 50475--50501 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
50465 ACGTATACGT
50475 TACTGGGACCGAC
1 TACTGGGACCGAC
50488 TACTGGGACCGAC
1 TACTGGGACCGAC
50501 T
1 T
50502 TAGCCGACCA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.22, C:0.30, G:0.30, T:0.19
Consensus pattern (13 bp):
TACTGGGACCGAC
Found at i:55196 original size:28 final size:27
Alignment explanation
Indices: 55160--55291 Score: 93
Period size: 28 Copynumber: 4.9 Consensus size: 27
55150 AACATAAAAA
*
55160 ATAAT-TAAAATATATTATAATATGAAT
1 ATAATATAAAAAATATTATAATAT-AAT
55187 ATAATATAAAAAATAATTA-AATAT-AT
1 ATAATATAAAAAAT-ATTATAATATAAT
*
55213 CA-ACATATAAAAAATATTATAAATTTAAT
1 -ATA-ATATAAAAAATATTAT-AATATAAT
*
55242 ATAAAATAAATAAATA-TATAA-A-AAT
1 ATAATATAAA-AAATATTATAATATAAT
*
55267 -TTATATAAAATAA-ATTATTAATATA
1 ATAATATAAAA-AATATTA-TAATATA
55292 TTAAAATTTA
Statistics
Matches: 85, Mismatches: 6, Indels: 28
0.71 0.05 0.24
Matches are distributed among these distances:
23 2 0.02
24 11 0.13
25 6 0.07
26 8 0.09
27 20 0.24
28 26 0.31
29 12 0.14
ACGTcount: A:0.61, C:0.02, G:0.01, T:0.36
Consensus pattern (27 bp):
ATAATATAAAAAATATTATAATATAAT
Found at i:55234 original size:39 final size:39
Alignment explanation
Indices: 55140--55235 Score: 106
Period size: 39 Copynumber: 2.5 Consensus size: 39
55130 TTTAAATACG
* * *
55140 ATATAAATATAACATAAAAAATAATTAAAATATATTATA
1 ATATAAAAATAATATAAAAAATAATTAAAATATATCATA
* *
55179 ATATGAATATAATATAAAAAATAATT-AAATATATCA-A
1 ATATAAAAATAATATAAAAAATAATTAAAATATATCATA
*
55216 CATATAAAAAATATTATAAA
1 -ATAT-AAAAATAATATAAA
55236 TTTAATATAA
Statistics
Matches: 49, Mismatches: 6, Indels: 4
0.83 0.10 0.07
Matches are distributed among these distances:
37 1 0.02
38 13 0.27
39 35 0.71
ACGTcount: A:0.64, C:0.03, G:0.01, T:0.32
Consensus pattern (39 bp):
ATATAAAAATAATATAAAAAATAATTAAAATATATCATA
Found at i:55298 original size:32 final size:30
Alignment explanation
Indices: 55226--55312 Score: 106
Period size: 32 Copynumber: 2.8 Consensus size: 30
55216 CATATAAAAA
55226 ATATTATAAATTTAATATAAAATAAA-TAAAT
1 ATATTA-AAATTT-ATATAAAATAAATTAAAT
*
55257 ATATAAAAATTTATATAAAATAAATTATTAAT
1 ATATTAAAATTTATATAAAATAAATTA--AAT
*
55289 ATATTAAAATTTACAT-AAATAAAT
1 ATATTAAAATTTATATAAAATAAAT
55313 AATACTTTAA
Statistics
Matches: 50, Mismatches: 3, Indels: 6
0.85 0.05 0.10
Matches are distributed among these distances:
29 12 0.24
30 8 0.16
31 13 0.26
32 17 0.34
ACGTcount: A:0.60, C:0.01, G:0.00, T:0.39
Consensus pattern (30 bp):
ATATTAAAATTTATATAAAATAAATTAAAT
Found at i:55829 original size:19 final size:18
Alignment explanation
Indices: 55794--55846 Score: 72
Period size: 19 Copynumber: 2.9 Consensus size: 18
55784 TTTAATTTTA
55794 AAATATAAAAAATTATAT
1 AAATATAAAAAATTATAT
55812 AAATATAATATAAA-TATAT
1 AAATATAA-A-AAATTATAT
*
55831 AAATATATAAAATTAT
1 AAATATAAAAAATTAT
55847 TTATTAATAT
Statistics
Matches: 31, Mismatches: 1, Indels: 6
0.82 0.03 0.16
Matches are distributed among these distances:
17 3 0.10
18 12 0.39
19 13 0.42
20 3 0.10
ACGTcount: A:0.64, C:0.00, G:0.00, T:0.36
Consensus pattern (18 bp):
AAATATAAAAAATTATAT
Found at i:56248 original size:14 final size:14
Alignment explanation
Indices: 56229--56256 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
56219 AAAAATTAAA
56229 AAATATTTTTATTT
1 AAATATTTTTATTT
56243 AAATATTTTTATTT
1 AAATATTTTTATTT
56257 TTATTTTCAA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.36, C:0.00, G:0.00, T:0.64
Consensus pattern (14 bp):
AAATATTTTTATTT
Found at i:56575 original size:17 final size:18
Alignment explanation
Indices: 56553--56607 Score: 58
Period size: 20 Copynumber: 2.9 Consensus size: 18
56543 TGATTTGACG
56553 TAATATTTTAAATATTT-
1 TAATATTTTAAATATTTA
56570 TAATATTTTTAAATTATTTA
1 TAATA-TTTTAAA-TATTTA
*
56590 TATATATATTAACATATT
1 TA-ATATTTTAA-ATATT
56608 ATGAAACATA
Statistics
Matches: 32, Mismatches: 1, Indels: 7
0.80 0.03 0.17
Matches are distributed among these distances:
17 5 0.16
18 7 0.22
19 5 0.16
20 11 0.34
21 4 0.12
ACGTcount: A:0.42, C:0.02, G:0.00, T:0.56
Consensus pattern (18 bp):
TAATATTTTAAATATTTA
Found at i:56594 original size:19 final size:18
Alignment explanation
Indices: 56553--56588 Score: 56
Period size: 18 Copynumber: 2.0 Consensus size: 18
56543 TGATTTGACG
56553 TAATA-TTTTAAATATTT
1 TAATATTTTTAAATATTT
56570 TAATATTTTTAAATTATTT
1 TAATATTTTTAAA-TATTT
56589 ATATATATAT
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
17 5 0.29
18 7 0.41
19 5 0.29
ACGTcount: A:0.39, C:0.00, G:0.00, T:0.61
Consensus pattern (18 bp):
TAATATTTTTAAATATTT
Found at i:56841 original size:17 final size:17
Alignment explanation
Indices: 56819--56854 Score: 56
Period size: 17 Copynumber: 2.1 Consensus size: 17
56809 AAATTATGAA
56819 AAAAAATGATT-ATAATT
1 AAAAAAT-ATTAATAATT
56836 AAAAAATATTAATAATT
1 AAAAAATATTAATAATT
56853 AA
1 AA
56855 TTTAAAAAAT
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
16 3 0.17
17 15 0.83
ACGTcount: A:0.64, C:0.00, G:0.03, T:0.33
Consensus pattern (17 bp):
AAAAAATATTAATAATT
Found at i:56933 original size:21 final size:20
Alignment explanation
Indices: 56895--56934 Score: 53
Period size: 21 Copynumber: 1.9 Consensus size: 20
56885 ATTTATTTAT
*
56895 ATATATTAATATATAAATTG
1 ATATATTAATATAAAAATTG
*
56915 ATATGATTTATATAAAAATT
1 ATAT-ATTAATATAAAAATT
56935 AAAATATTCT
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
20 4 0.24
21 13 0.76
ACGTcount: A:0.50, C:0.00, G:0.05, T:0.45
Consensus pattern (20 bp):
ATATATTAATATAAAAATTG
Found at i:57468 original size:18 final size:19
Alignment explanation
Indices: 57430--57507 Score: 63
Period size: 19 Copynumber: 4.2 Consensus size: 19
57420 GAAAATTTTT
*
57430 ATATTTTTATCATATTTTA
1 ATATTTTTATCATATTATA
*
57449 ATATTTTTAT-GTATTATA
1 ATATTTTTATCATATTATA
* **
57467 ATTTTATTTAAAATATTAT-
1 ATATT-TTTATCATATTATA
* *
57486 ATATTTATAT-AAATTATA
1 ATATTTTTATCATATTATA
57504 ATAT
1 ATAT
57508 ATTAAAATTT
Statistics
Matches: 47, Mismatches: 9, Indels: 7
0.75 0.14 0.11
Matches are distributed among these distances:
17 6 0.13
18 17 0.36
19 18 0.38
20 6 0.13
ACGTcount: A:0.40, C:0.01, G:0.01, T:0.58
Consensus pattern (19 bp):
ATATTTTTATCATATTATA
Found at i:57492 original size:20 final size:20
Alignment explanation
Indices: 57460--57510 Score: 59
Period size: 20 Copynumber: 2.5 Consensus size: 20
57450 TATTTTTATG
*
57460 TATTATA-ATTTTATTTAAAA
1 TATTATATA-TTTATATAAAA
*
57480 TATTATATATTTATATAAAT
1 TATTATATATTTATATAAAA
*
57500 TATAATATATT
1 TATTATATATT
57511 AAAATTTATA
Statistics
Matches: 27, Mismatches: 3, Indels: 2
0.84 0.09 0.06
Matches are distributed among these distances:
20 26 0.96
21 1 0.04
ACGTcount: A:0.45, C:0.00, G:0.00, T:0.55
Consensus pattern (20 bp):
TATTATATATTTATATAAAA
Found at i:57919 original size:5 final size:5
Alignment explanation
Indices: 57909--57940 Score: 57
Period size: 5 Copynumber: 6.6 Consensus size: 5
57899 AGCTCTACAA
57909 TTTAT TTTAT TTTAT TTTAT TTT-T TTTAT TTT
1 TTTAT TTTAT TTTAT TTTAT TTTAT TTTAT TTT
57941 TACTTGCCCC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
4 4 0.15
5 22 0.85
ACGTcount: A:0.16, C:0.00, G:0.00, T:0.84
Consensus pattern (5 bp):
TTTAT
Found at i:57935 original size:9 final size:9
Alignment explanation
Indices: 57908--57941 Score: 50
Period size: 9 Copynumber: 3.7 Consensus size: 9
57898 TAGCTCTACA
*
57908 ATTTATTTT
1 ATTTTTTTT
57917 ATTTTATTTT
1 ATTTT-TTTT
57927 ATTTTTTTT
1 ATTTTTTTT
57936 ATTTTT
1 ATTTTT
57942 ACTTGCCCCG
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
9 14 0.61
10 9 0.39
ACGTcount: A:0.18, C:0.00, G:0.00, T:0.82
Consensus pattern (9 bp):
ATTTTTTTT
Found at i:57942 original size:15 final size:15
Alignment explanation
Indices: 57909--57940 Score: 57
Period size: 14 Copynumber: 2.2 Consensus size: 15
57899 AGCTCTACAA
57909 TTTATTTTATTTTAT
1 TTTATTTTATTTTAT
57924 TTTATTTT-TTTTAT
1 TTTATTTTATTTTAT
57938 TTT
1 TTT
57941 TACTTGCCCC
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 9 0.53
15 8 0.47
ACGTcount: A:0.16, C:0.00, G:0.00, T:0.84
Consensus pattern (15 bp):
TTTATTTTATTTTAT
Found at i:59221 original size:12 final size:12
Alignment explanation
Indices: 59204--59256 Score: 52
Period size: 13 Copynumber: 4.2 Consensus size: 12
59194 GTATGGTATT
*
59204 TATTATTATAAA
1 TATTATAATAAA
*
59216 TATTATAATAAT
1 TATTATAATAAA
*
59228 TAATTAAAATAAA
1 T-ATTATAATAAA
*
59241 TAATAATAATAAA
1 T-ATTATAATAAA
59254 TAT
1 TAT
59257 AAATTATATA
Statistics
Matches: 34, Mismatches: 6, Indels: 2
0.81 0.14 0.05
Matches are distributed among these distances:
12 13 0.38
13 21 0.62
ACGTcount: A:0.58, C:0.00, G:0.00, T:0.42
Consensus pattern (12 bp):
TATTATAATAAA
Found at i:59261 original size:29 final size:28
Alignment explanation
Indices: 59229--59295 Score: 66
Period size: 29 Copynumber: 2.3 Consensus size: 28
59219 TATAATAATT
59229 AATTAAAATAAATAATAA-TAATAAA-TATA
1 AATTAAAATAAA-AATAATTAA-AAATTA-A
* *
59258 AATTATATATGAAAATAATTAAAAATTAA
1 AATTA-AAATAAAAATAATTAAAAATTAA
59287 AATTAAAAT
1 AATTAAAAT
59296 TTATATAAAT
Statistics
Matches: 32, Mismatches: 3, Indels: 7
0.76 0.07 0.17
Matches are distributed among these distances:
28 3 0.09
29 19 0.59
30 10 0.31
ACGTcount: A:0.66, C:0.00, G:0.01, T:0.33
Consensus pattern (28 bp):
AATTAAAATAAAAATAATTAAAAATTAA
Found at i:60007 original size:28 final size:28
Alignment explanation
Indices: 59960--60015 Score: 78
Period size: 28 Copynumber: 2.0 Consensus size: 28
59950 TATTTAATTT
59960 AATTTTAATTTTAATAATATTAAATATCA
1 AATTTTAATTTTAATAATA-TAAATATCA
* *
59989 AATTTT-ATTTTATTTATATAAATATCA
1 AATTTTAATTTTAATAATATAAATATCA
60016 GTGAGATATC
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
27 9 0.36
28 10 0.40
29 6 0.24
ACGTcount: A:0.45, C:0.04, G:0.00, T:0.52
Consensus pattern (28 bp):
AATTTTAATTTTAATAATATAAATATCA
Found at i:60013 original size:34 final size:34
Alignment explanation
Indices: 59939--60013 Score: 82
Period size: 34 Copynumber: 2.2 Consensus size: 34
59929 ATAAAAAAAT
* **
59939 TAAATATTTAATATTTAATTTAATTTTAATTTTA
1 TAAATATTAAATATCAAATTTAATTTTAATTTTA
*
59973 -ATAATATTAAATATCAAATTTTATTTT-ATTTATA
1 TA-AATATTAAATATCAAATTTAATTTTAATTT-TA
60007 TAAATAT
1 TAAATAT
60014 CAGTGAGATA
Statistics
Matches: 34, Mismatches: 4, Indels: 6
0.77 0.09 0.14
Matches are distributed among these distances:
33 5 0.15
34 28 0.82
35 1 0.03
ACGTcount: A:0.44, C:0.01, G:0.00, T:0.55
Consensus pattern (34 bp):
TAAATATTAAATATCAAATTTAATTTTAATTTTA
Found at i:60640 original size:15 final size:16
Alignment explanation
Indices: 60620--60655 Score: 56
Period size: 15 Copynumber: 2.3 Consensus size: 16
60610 AATATTTTTT
60620 TTAAATTTAAATT-AA
1 TTAAATTTAAATTAAA
*
60635 TTAAATTTAGATTAAA
1 TTAAATTTAAATTAAA
60651 TTAAA
1 TTAAA
60656 AATTTGATTA
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
15 12 0.63
16 7 0.37
ACGTcount: A:0.53, C:0.00, G:0.03, T:0.44
Consensus pattern (16 bp):
TTAAATTTAAATTAAA
Found at i:60666 original size:17 final size:19
Alignment explanation
Indices: 60626--60666 Score: 59
Period size: 20 Copynumber: 2.2 Consensus size: 19
60616 TTTTTTAAAT
60626 TTAAATTAATTAAATTTAGA
1 TTAAATTAA-TAAATTTAGA
60646 TTAAATTAA-AAATTT-GA
1 TTAAATTAATAAATTTAGA
60663 TTAA
1 TTAA
60667 CTGTTATTAT
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
17 6 0.29
18 6 0.29
20 9 0.43
ACGTcount: A:0.51, C:0.00, G:0.05, T:0.44
Consensus pattern (19 bp):
TTAAATTAATAAATTTAGA
Found at i:60706 original size:16 final size:17
Alignment explanation
Indices: 60680--60712 Score: 50
Period size: 16 Copynumber: 2.0 Consensus size: 17
60670 TTATTATTTA
*
60680 AATATTATTTTTTTAAT
1 AATATTATTTTTATAAT
60697 AATA-TATTTTTATAAT
1 AATATTATTTTTATAAT
60713 TAAATTTTAA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
16 11 0.73
17 4 0.27
ACGTcount: A:0.39, C:0.00, G:0.00, T:0.61
Consensus pattern (17 bp):
AATATTATTTTTATAAT
Found at i:62571 original size:2 final size:2
Alignment explanation
Indices: 62560--62598 Score: 71
Period size: 2 Copynumber: 20.0 Consensus size: 2
62550 CACTAACCAA
62560 AT AT -T AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
62599 CCAAGTCAAT
Statistics
Matches: 36, Mismatches: 0, Indels: 2
0.95 0.00 0.05
Matches are distributed among these distances:
1 1 0.03
2 35 0.97
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (2 bp):
AT
Found at i:73485 original size:209 final size:209
Alignment explanation
Indices: 73125--73545 Score: 779
Period size: 209 Copynumber: 2.0 Consensus size: 209
73115 TACATAACCC
* *
73125 TAGAATCAATCAAATTCTTTGCATTTGCTCAGCTTTTTTAATTGGGACCATACTAATTAATGATC
1 TAGAATCAATCAAATTCTTTGCACTTGCTCAGCTTCTTTAATTGGGACCATACTAATTAATGATC
73190 ATTACACTGTATGCCCTATGAATGTAAGATAGCCATATACTCAACCAATGCTAACAAAATCAGGC
66 ATTACACTGTATGCCCTATGAATGTAAGATAGCCATATACTCAACCAATGCTAACAAAATCAGGC
*
73255 ACATGGGAAAAAAATGCAGTTGGAGGCATATTAACCGGCACCAAATTGAACCATCACCCAATACA
131 ACATGGGAAAAAAATGCAGTTGGAGGCATATTAACAGGCACCAAATTGAACCATCACCCAATACA
73320 TATCATTAACCACG
196 TATCATTAACCACG
73334 TAGAATCAATCAAATTCTTTGCACTTGCTCAGCTTCTTTAATTGGGACCATACTAATTAATGATC
1 TAGAATCAATCAAATTCTTTGCACTTGCTCAGCTTCTTTAATTGGGACCATACTAATTAATGATC
* *
73399 ATTACGCTGTATGCCCTATGAATGTAAGATAGCCATATACTCAACCAATGTTAACAAAATCAGGC
66 ATTACACTGTATGCCCTATGAATGTAAGATAGCCATATACTCAACCAATGCTAACAAAATCAGGC
*
73464 ACATGGGAAAAAAATGCAGTTGGAGGCATATTAACAGGCACCAAATTGAACCATCACCCAATACG
131 ACATGGGAAAAAAATGCAGTTGGAGGCATATTAACAGGCACCAAATTGAACCATCACCCAATACA
*
73529 TATCATTCACCACG
196 TATCATTAACCACG
73543 TAG
1 TAG
73546 CAAAATCAAA
Statistics
Matches: 205, Mismatches: 7, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
209 205 1.00
ACGTcount: A:0.36, C:0.22, G:0.15, T:0.27
Consensus pattern (209 bp):
TAGAATCAATCAAATTCTTTGCACTTGCTCAGCTTCTTTAATTGGGACCATACTAATTAATGATC
ATTACACTGTATGCCCTATGAATGTAAGATAGCCATATACTCAACCAATGCTAACAAAATCAGGC
ACATGGGAAAAAAATGCAGTTGGAGGCATATTAACAGGCACCAAATTGAACCATCACCCAATACA
TATCATTAACCACG
Found at i:73880 original size:2 final size:2
Alignment explanation
Indices: 73873--73906 Score: 68
Period size: 2 Copynumber: 17.0 Consensus size: 2
73863 AATAAAAATC
73873 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
73907 TCAACAATTG
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 32 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:74976 original size:11 final size:11
Alignment explanation
Indices: 74953--74984 Score: 55
Period size: 11 Copynumber: 2.8 Consensus size: 11
74943 ATTCAATAAT
74953 TTATTATAAAAA
1 TTATTA-AAAAA
74965 TTATTAAAAAA
1 TTATTAAAAAA
74976 TTATTAAAA
1 TTATTAAAA
74985 TAAATATTTA
Statistics
Matches: 20, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
11 14 0.70
12 6 0.30
ACGTcount: A:0.59, C:0.00, G:0.00, T:0.41
Consensus pattern (11 bp):
TTATTAAAAAA
Found at i:75377 original size:16 final size:15
Alignment explanation
Indices: 75326--75377 Score: 51
Period size: 12 Copynumber: 3.7 Consensus size: 15
75316 TACATTTTTT
75326 TTAATTAT-ATTATA
1 TTAATTATAATTATA
*
75340 TT-TTTATAATTATA
1 TTAATTATAATTATA
75354 --AA-TATAATTATGA
1 TTAATTATAATTAT-A
75367 TTAATTATAAT
1 TTAATTATAAT
75378 AAAAAATAAT
Statistics
Matches: 30, Mismatches: 2, Indels: 10
0.71 0.05 0.24
Matches are distributed among these distances:
12 9 0.30
13 5 0.17
14 8 0.27
15 2 0.07
16 6 0.20
ACGTcount: A:0.44, C:0.00, G:0.02, T:0.54
Consensus pattern (15 bp):
TTAATTATAATTATA
Found at i:75419 original size:19 final size:20
Alignment explanation
Indices: 75373--75412 Score: 66
Period size: 20 Copynumber: 2.1 Consensus size: 20
75363 ATGATTAATT
75373 ATAATAAAAAATAATTATAA
1 ATAATAAAAAATAATTATAA
75393 ATAATAAAAAA-AATTA-AA
1 ATAATAAAAAATAATTATAA
75411 AT
1 AT
75413 TTATAAATTT
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
18 4 0.20
19 5 0.25
20 11 0.55
ACGTcount: A:0.72, C:0.00, G:0.00, T:0.28
Consensus pattern (20 bp):
ATAATAAAAAATAATTATAA
Found at i:75590 original size:61 final size:61
Alignment explanation
Indices: 75475--75590 Score: 139
Period size: 61 Copynumber: 1.9 Consensus size: 61
75465 AAAAATTATT
* * * *
75475 AAAAAAAAATGATGTTCACTTAACCATTACCTGGTAAAGATTTTACTGAGGTGAAATTGAA
1 AAAAAAAAATGATGTTCACTTAACCATTACCTAGTAAAGAGTTCACTAAGGTGAAATTGAA
*
75536 AAAAAAAAACT-ATGTTCACTTAA-CAGTTGA-CTAGTAAAGAGTTCACTAATGTGAA
1 AAAAAAAAA-TGATGTTCACTTAACCA-TT-ACCTAGTAAAGAGTTCACTAAGGTGAA
75591 TTTACCATGA
Statistics
Matches: 47, Mismatches: 5, Indels: 6
0.81 0.09 0.10
Matches are distributed among these distances:
60 2 0.04
61 43 0.91
62 2 0.04
ACGTcount: A:0.44, C:0.12, G:0.16, T:0.28
Consensus pattern (61 bp):
AAAAAAAAATGATGTTCACTTAACCATTACCTAGTAAAGAGTTCACTAAGGTGAAATTGAA
Found at i:75786 original size:20 final size:22
Alignment explanation
Indices: 75747--75801 Score: 62
Period size: 21 Copynumber: 2.5 Consensus size: 22
75737 TGTATTTTTG
*
75747 TTATGAATATATATTGTAATTTA
1 TTAT-AATATATATTGTAATATA
75770 TTATAATA-ATATT-TAATATA
1 TTATAATATATATTGTAATATA
75790 TTCATAAT-TATA
1 TT-ATAATATATA
75802 AATGATGAAT
Statistics
Matches: 29, Mismatches: 1, Indels: 6
0.81 0.03 0.17
Matches are distributed among these distances:
20 8 0.28
21 13 0.45
22 4 0.14
23 4 0.14
ACGTcount: A:0.44, C:0.02, G:0.04, T:0.51
Consensus pattern (22 bp):
TTATAATATATATTGTAATATA
Found at i:76284 original size:2 final size:2
Alignment explanation
Indices: 76277--76303 Score: 54
Period size: 2 Copynumber: 13.5 Consensus size: 2
76267 TTTACCAAAA
76277 AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT A
76304 CCATTAATTA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 25 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:77187 original size:18 final size:19
Alignment explanation
Indices: 77166--77223 Score: 50
Period size: 18 Copynumber: 3.1 Consensus size: 19
77156 AATATTTTAC
77166 ATAATTAA-TTATAATAAT
1 ATAATTAACTTATAATAAT
77184 ATAATTTTAACTT-TAAATAAT
1 ATAA--TTAACTTAT-AATAAT
* *
77205 AT-ATTAATTTATCATAAT
1 ATAATTAACTTATAATAAT
77223 A
1 A
77224 ATTTAATTTT
Statistics
Matches: 33, Mismatches: 2, Indels: 10
0.73 0.04 0.22
Matches are distributed among these distances:
18 16 0.48
19 1 0.03
20 6 0.18
21 10 0.30
ACGTcount: A:0.50, C:0.03, G:0.00, T:0.47
Consensus pattern (19 bp):
ATAATTAACTTATAATAAT
Found at i:77212 original size:24 final size:24
Alignment explanation
Indices: 77176--77259 Score: 65
Period size: 24 Copynumber: 3.7 Consensus size: 24
77166 ATAATTAATT
77176 ATAATA-ATATAATTTTAACTTTAA
1 ATAATATAT-TAATTTTAACTTTAA
* *
77200 ATAATATATTAA-TTTATC-AT-A
1 ATAATATATTAATTTTAACTTTAA
*
77221 AT-A-AT-TTAATTTTAATTTTTAA
1 ATAATATATTAATTTTAA-CTTTAA
*
77243 ATAATATATTATTTTTA
1 ATAATATATTAATTTTA
77260 TACTATAATC
Statistics
Matches: 46, Mismatches: 6, Indels: 15
0.69 0.09 0.22
Matches are distributed among these distances:
18 4 0.09
19 6 0.13
20 1 0.02
21 4 0.09
22 4 0.09
23 6 0.13
24 11 0.24
25 10 0.22
ACGTcount: A:0.45, C:0.02, G:0.00, T:0.52
Consensus pattern (24 bp):
ATAATATATTAATTTTAACTTTAA
Found at i:77223 original size:42 final size:43
Alignment explanation
Indices: 77167--77253 Score: 131
Period size: 42 Copynumber: 2.0 Consensus size: 43
77157 ATATTTTACA
*
77167 TAATTAATTATAATAATATAATTTTAA-CTTTAAATAATATAT
1 TAATTAATCATAATAATATAATTTTAATCTTTAAATAATATAT
* * *
77209 TAATTTATCATAATAATTTAATTTTAATTTTTAAATAATATAT
1 TAATTAATCATAATAATATAATTTTAATCTTTAAATAATATAT
77252 TA
1 TA
77254 TTTTTATACT
Statistics
Matches: 40, Mismatches: 4, Indels: 1
0.89 0.09 0.02
Matches are distributed among these distances:
42 24 0.60
43 16 0.40
ACGTcount: A:0.47, C:0.02, G:0.00, T:0.51
Consensus pattern (43 bp):
TAATTAATCATAATAATATAATTTTAATCTTTAAATAATATAT
Found at i:78778 original size:18 final size:20
Alignment explanation
Indices: 78742--78780 Score: 55
Period size: 20 Copynumber: 2.0 Consensus size: 20
78732 AAATAATTTT
78742 ATAATTTTTTTAAGTCTTATA
1 ATAATTTTTTTAAG-CTTATA
78763 ATAA-TTTTTTAA-CTTATA
1 ATAATTTTTTTAAGCTTATA
78781 TTCTCATATT
Statistics
Matches: 18, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
18 6 0.33
20 8 0.44
21 4 0.22
ACGTcount: A:0.36, C:0.05, G:0.03, T:0.56
Consensus pattern (20 bp):
ATAATTTTTTTAAGCTTATA
Found at i:80046 original size:22 final size:22
Alignment explanation
Indices: 79995--80049 Score: 58
Period size: 22 Copynumber: 2.5 Consensus size: 22
79985 GAGTTAACTC
*
79995 TATTAATATAATTTAAAAATAA
1 TATTAAAATAATTTAAAAATAA
** *
80017 TAAAAAAATAA-TTAAAAGTAA
1 TATTAAAATAATTTAAAAATAA
80038 TTATTAAAATAA
1 -TATTAAAATAA
80050 ATTTCTTTTT
Statistics
Matches: 26, Mismatches: 6, Indels: 2
0.76 0.18 0.06
Matches are distributed among these distances:
21 9 0.35
22 17 0.65
ACGTcount: A:0.64, C:0.00, G:0.02, T:0.35
Consensus pattern (22 bp):
TATTAAAATAATTTAAAAATAA
Found at i:81034 original size:102 final size:101
Alignment explanation
Indices: 80853--81037 Score: 246
Period size: 102 Copynumber: 1.8 Consensus size: 101
80843 GTAAGTATTA
* * * * *
80853 TAAAATTTTTAATTAAATTAATATCACAAACTAATATCAATTGAGTTAAAAAATTAGTAATTAAA
1 TAAAATTTTTAATTAAATTAATATCAAAAACAAACATCAATTGAGTTAAAAAATTAATAATAAAA
** *
80918 TTGATGTTACAAATAAAATTATATATTTTATTTTTT
66 TTGAAATTAAAAATAAAATTATATATTTTATTTTTT
* *
80954 TAAAATTTTTTAATTAAATTGATGTCAAAAACAAACATCAATTGAGTTAAAAAATTAATAA-AAA
1 TAAAA-TTTTTAATTAAATTAATATCAAAAACAAACATCAATTGAGTTAAAAAATTAATAATAAA
*
81018 ATTTAAATTATAAAATAAAA
65 ATTGAAATTA-AAAATAAAA
81038 ATATTTTTTT
Statistics
Matches: 71, Mismatches: 11, Indels: 3
0.84 0.13 0.04
Matches are distributed among these distances:
101 14 0.20
102 57 0.80
ACGTcount: A:0.51, C:0.05, G:0.05, T:0.39
Consensus pattern (101 bp):
TAAAATTTTTAATTAAATTAATATCAAAAACAAACATCAATTGAGTTAAAAAATTAATAATAAAA
TTGAAATTAAAAATAAAATTATATATTTTATTTTTT
Found at i:81639 original size:14 final size:14
Alignment explanation
Indices: 81606--81632 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
81596 AATAATAAAA
81606 AATATATTTATATT
1 AATATATTTATATT
81620 AATATATTTATAT
1 AATATATTTATAT
81633 AATTATAATT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.44, C:0.00, G:0.00, T:0.56
Consensus pattern (14 bp):
AATATATTTATATT
Found at i:83488 original size:559 final size:559
Alignment explanation
Indices: 82431--83551 Score: 2217
Period size: 559 Copynumber: 2.0 Consensus size: 559
82421 TTAATAAAAA
82431 TCTCTTTAACATGGTTCTGGTTCTATCATCCGCTTAGGTGTTTAAACATTAGGATTGAAAATAGA
1 TCTCTTTAACATGGTTCTGGTTCTATCATCCGCTTAGGTGTTTAAACATTAGGATTGAAAATAGA
82496 TTCTTTTCCGTGTTCATTTTGCTGCCGTAGTTTGCATTCTAGATGTGTAAGTGGCATTTATATTC
66 TTCTTTTCCGTGTTCATTTTGCTGCCGTAGTTTGCATTCTAGATGTGTAAGTGGCATTTATATTC
82561 TGTATGTAGTAACTGTTGACAAATCCAGAATCATTTATTGGAGATGTTGATCTAATATTTGCAGT
131 TGTATGTAGTAACTGTTGACAAATCCAGAATCATTTATTGGAGATGTTGATCTAATATTTGCAGT
82626 TGCAGAATATATCTAAGTGAAAATTGTTATTGGTGTCATATAATGATGTAGAATTAGTGTTTTTT
196 TGCAGAATATATCTAAGTGAAAATTGTTATTGGTGTCATATAATGATGTAGAATTAGTGTTTTTT
82691 TTTTAAAAAAAAATTGTAGTGGATCTGAACGCCGTGAAACGTTTACATTTTAGATTGATGTATTT
261 TTTTAAAAAAAAATTGTAGTGGATCTGAACGCCGTGAAACGTTTACATTTTAGATTGATGTATTT
82756 GAACCTTTTCTCTCTCTGAATTTCTTATTGGATCCATTTTGCTTCTCACTCTTCACATTTCTTGA
326 GAACCTTTTCTCTCTCTGAATTTCTTATTGGATCCATTTTGCTTCTCACTCTTCACATTTCTTGA
82821 AAGGCCTGTTTGCCTACTAAATTTGTTTAAATAATGGGATTCTGTTTAGTTGGTTGTATGTCATT
391 AAGGCCTGTTTGCCTACTAAATTTGTTTAAATAATGGGATTCTGTTTAGTTGGTTGTATGTCATT
82886 CTGATATCTATGCAATTATGGGATTGAACAGCAAGAGTAACATTGATAGTTCCTGTTGTTGTAAT
456 CTGATATCTATGCAATTATGGGATTGAACAGCAAGAGTAACATTGATAGTTCCTGTTGTTGTAAT
82951 TATTTGATTCTTAACTAGCTCCTAGTTTCCCGACATTTT
521 TATTTGATTCTTAACTAGCTCCTAGTTTCCCGACATTTT
82990 TCTCTTTAACATGGTTCTGGTTCTATCATCCGCTTAGGTGTTTAAACATTAGGATTGAAAATAGA
1 TCTCTTTAACATGGTTCTGGTTCTATCATCCGCTTAGGTGTTTAAACATTAGGATTGAAAATAGA
83055 TTCTTTTCCGTGTTCATTTTGCTGCCGTAGTTTGCATTCTAGATGTGTAAGTGGCATTTATATTC
66 TTCTTTTCCGTGTTCATTTTGCTGCCGTAGTTTGCATTCTAGATGTGTAAGTGGCATTTATATTC
83120 TGTATGTAGTAACTGTTGACAAATCCAGAATCATTTATTGGAGATGTTGATCTAATATTTGCAGT
131 TGTATGTAGTAACTGTTGACAAATCCAGAATCATTTATTGGAGATGTTGATCTAATATTTGCAGT
83185 TGCAGAATATATCTAAGTGAAAATTGTTATTGGTGTCATATAATGATGTAGAATTAGTG-TTTTT
196 TGCAGAATATATCTAAGTGAAAATTGTTATTGGTGTCATATAATGATGTAGAATTAGTGTTTTTT
83249 TTTTAAAAAAAAATTTGTAGTGGATCTGAACGCCGTGAAACGTTTACATTTTAGATTGATGTATT
261 TTTTAAAAAAAAA-TTGTAGTGGATCTGAACGCCGTGAAACGTTTACATTTTAGATTGATGTATT
83314 TGAACCTTTTCTCTCTCTGAATTTCTTATTGGATCCATTTTGCTTCTCACTCTTCACATTTCTTG
325 TGAACCTTTTCTCTCTCTGAATTTCTTATTGGATCCATTTTGCTTCTCACTCTTCACATTTCTTG
83379 AAAGGCCTGTTTGCCTACTAAATTTGTTTAAATAATGGGATTCTGTTTAGTTGGTTGTATGTCAT
390 AAAGGCCTGTTTGCCTACTAAATTTGTTTAAATAATGGGATTCTGTTTAGTTGGTTGTATGTCAT
83444 TCTGATATCTATGCAATTATGGGATTGAACAGCAAGAGTAACATTGATAGTTCCTGTTGTTGTAA
455 TCTGATATCTATGCAATTATGGGATTGAACAGCAAGAGTAACATTGATAGTTCCTGTTGTTGTAA
*
83509 TTATTTGATTCTTAACTAGCTCCTAGTTTTCCGACATTTT
520 TTATTTGATTCTTAACTAGCTCCTAGTTTCCCGACATTTT
83549 TCT
1 TCT
83552 TCTGAACTTG
Statistics
Matches: 560, Mismatches: 1, Indels: 2
0.99 0.00 0.00
Matches are distributed among these distances:
558 18 0.03
559 542 0.97
ACGTcount: A:0.26, C:0.14, G:0.18, T:0.42
Consensus pattern (559 bp):
TCTCTTTAACATGGTTCTGGTTCTATCATCCGCTTAGGTGTTTAAACATTAGGATTGAAAATAGA
TTCTTTTCCGTGTTCATTTTGCTGCCGTAGTTTGCATTCTAGATGTGTAAGTGGCATTTATATTC
TGTATGTAGTAACTGTTGACAAATCCAGAATCATTTATTGGAGATGTTGATCTAATATTTGCAGT
TGCAGAATATATCTAAGTGAAAATTGTTATTGGTGTCATATAATGATGTAGAATTAGTGTTTTTT
TTTTAAAAAAAAATTGTAGTGGATCTGAACGCCGTGAAACGTTTACATTTTAGATTGATGTATTT
GAACCTTTTCTCTCTCTGAATTTCTTATTGGATCCATTTTGCTTCTCACTCTTCACATTTCTTGA
AAGGCCTGTTTGCCTACTAAATTTGTTTAAATAATGGGATTCTGTTTAGTTGGTTGTATGTCATT
CTGATATCTATGCAATTATGGGATTGAACAGCAAGAGTAACATTGATAGTTCCTGTTGTTGTAAT
TATTTGATTCTTAACTAGCTCCTAGTTTCCCGACATTTT
Found at i:91238 original size:2 final size:2
Alignment explanation
Indices: 91231--91268 Score: 69
Period size: 2 Copynumber: 19.5 Consensus size: 2
91221 TCTTGGCATT
91231 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T- TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
91269 TCTTAAATTA
Statistics
Matches: 35, Mismatches: 0, Indels: 2
0.95 0.00 0.05
Matches are distributed among these distances:
1 1 0.03
2 34 0.97
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (2 bp):
TA
Found at i:92606 original size:22 final size:23
Alignment explanation
Indices: 92581--92642 Score: 67
Period size: 22 Copynumber: 2.8 Consensus size: 23
92571 ATTCTTTAAA
* *
92581 AAATATAAATTTAATAAT-ATAT
1 AAATATAAATATAAAAATAATAT
92603 AAATATAAATATAAAAATAATAT
1 AAATATAAATATAAAAATAATAT
*
92626 -ATTATATAAT-TAAAAAT
1 AAATATA-AATATAAAAAT
92643 GATACGAATT
Statistics
Matches: 35, Mismatches: 3, Indels: 4
0.83 0.07 0.10
Matches are distributed among these distances:
22 28 0.80
23 7 0.20
ACGTcount: A:0.63, C:0.00, G:0.00, T:0.37
Consensus pattern (23 bp):
AAATATAAATATAAAAATAATAT
Found at i:92707 original size:18 final size:18
Alignment explanation
Indices: 92684--92727 Score: 54
Period size: 17 Copynumber: 2.5 Consensus size: 18
92674 AGATTTAATT
92684 ATTTTTAAATAAAATTAA
1 ATTTTTAAATAAAATTAA
* *
92702 ATTTTT-ACTTAAATTAA
1 ATTTTTAAATAAAATTAA
*
92719 TTTTTTAAA
1 ATTTTTAAA
92728 CTTAATATTT
Statistics
Matches: 21, Mismatches: 4, Indels: 2
0.78 0.15 0.07
Matches are distributed among these distances:
17 14 0.67
18 7 0.33
ACGTcount: A:0.45, C:0.02, G:0.00, T:0.52
Consensus pattern (18 bp):
ATTTTTAAATAAAATTAA
Found at i:93063 original size:6 final size:6
Alignment explanation
Indices: 93049--93084 Score: 63
Period size: 6 Copynumber: 6.0 Consensus size: 6
93039 CTGAATCCCC
*
93049 CCATAG CCATTG CCATAG CCATAG CCATAG CCATAG
1 CCATAG CCATAG CCATAG CCATAG CCATAG CCATAG
93085 GGGCCTATAA
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
6 28 1.00
ACGTcount: A:0.31, C:0.33, G:0.17, T:0.19
Consensus pattern (6 bp):
CCATAG
Found at i:93340 original size:12 final size:11
Alignment explanation
Indices: 93320--93352 Score: 57
Period size: 11 Copynumber: 2.9 Consensus size: 11
93310 ATAAATAATT
93320 AAAAATTTTTA
1 AAAAATTTTTA
93331 AAAAATTTTTA
1 AAAAATTTTTA
93342 ATAAAATTTTT
1 A-AAAATTTTT
93353 TTAATTAAAT
Statistics
Matches: 21, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
11 12 0.57
12 9 0.43
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (11 bp):
AAAAATTTTTA
Found at i:93353 original size:14 final size:14
Alignment explanation
Indices: 93325--93364 Score: 50
Period size: 14 Copynumber: 3.1 Consensus size: 14
93315 TAATTAAAAA
93325 TTTTTAA-AAAA--
1 TTTTTAATAAAATT
93336 TTTTTAATAAAATT
1 TTTTTAATAAAATT
*
93350 TTTTTAATTAAATT
1 TTTTTAATAAAATT
93364 T
1 T
93365 AAATAAAAAT
Statistics
Matches: 25, Mismatches: 1, Indels: 3
0.86 0.03 0.10
Matches are distributed among these distances:
11 7 0.28
12 4 0.16
14 14 0.56
ACGTcount: A:0.42, C:0.00, G:0.00, T:0.57
Consensus pattern (14 bp):
TTTTTAATAAAATT
Found at i:93650 original size:21 final size:22
Alignment explanation
Indices: 93614--93655 Score: 68
Period size: 22 Copynumber: 2.0 Consensus size: 22
93604 TATTTTATTT
93614 AATTTTAAAATATATTTAAAAA
1 AATTTTAAAATATATTTAAAAA
*
93636 AATTTTAATAT-TATTTAAAA
1 AATTTTAAAATATATTTAAAA
93656 TAATGATAAA
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
21 9 0.47
22 10 0.53
ACGTcount: A:0.55, C:0.00, G:0.00, T:0.45
Consensus pattern (22 bp):
AATTTTAAAATATATTTAAAAA
Found at i:95213 original size:2 final size:2
Alignment explanation
Indices: 95206--95234 Score: 58
Period size: 2 Copynumber: 14.5 Consensus size: 2
95196 AACGATAAAG
95206 AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
95235 AAATAATTTA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:97001 original size:20 final size:20
Alignment explanation
Indices: 96990--97026 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
96980 AAATCTTATA
96990 AATTT-ATATAAAATTTAAT
1 AATTTAATATAAAATTTAAT
*
97009 AATTTAATATAAATTTTA
1 AATTTAATATAAAATTTA
97027 CTGTATTTAG
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
19 5 0.31
20 11 0.69
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (20 bp):
AATTTAATATAAAATTTAAT
Found at i:97335 original size:16 final size:16
Alignment explanation
Indices: 97314--97348 Score: 52
Period size: 16 Copynumber: 2.2 Consensus size: 16
97304 ATTTTTAAAA
* *
97314 ATATTTATATGTATAT
1 ATATTTAAATATATAT
97330 ATATTTAAATATATAT
1 ATATTTAAATATATAT
97346 ATA
1 ATA
97349 AATGTAATTT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.46, C:0.00, G:0.03, T:0.51
Consensus pattern (16 bp):
ATATTTAAATATATAT
Found at i:97604 original size:2 final size:2
Alignment explanation
Indices: 97597--97622 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
97587 ATCTCACATG
97597 TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA
97623 CACATTAAAA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:98095 original size:2 final size:2
Alignment explanation
Indices: 98088--98113 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
98078 CTGTTAGTTA
98088 AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT
98114 CTGTTTCTTT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:98548 original size:16 final size:17
Alignment explanation
Indices: 98527--98574 Score: 53
Period size: 16 Copynumber: 2.8 Consensus size: 17
98517 TAGATCATAT
*
98527 TTTTATCAAT-TTTTTA
1 TTTTATCAATATTTTAA
*
98543 TTTTATTAATATTTTAA
1 TTTTATCAATATTTTAA
98560 TTATTATCACATATT
1 TT-TTATCA-ATATT
98575 GAGTGTAATT
Statistics
Matches: 26, Mismatches: 3, Indels: 3
0.81 0.09 0.09
Matches are distributed among these distances:
16 9 0.35
17 7 0.27
18 5 0.19
19 5 0.19
ACGTcount: A:0.31, C:0.06, G:0.00, T:0.62
Consensus pattern (17 bp):
TTTTATCAATATTTTAA
Found at i:99851 original size:18 final size:19
Alignment explanation
Indices: 99825--99860 Score: 56
Period size: 18 Copynumber: 1.9 Consensus size: 19
99815 AATCTATTTA
99825 TTTAAAAAATAAA-AAAAT
1 TTTAAAAAATAAATAAAAT
*
99843 TTTATAAAATAAATAAAA
1 TTTAAAAAATAAATAAAA
99861 ACCACAAAGC
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
18 12 0.75
19 4 0.25
ACGTcount: A:0.69, C:0.00, G:0.00, T:0.31
Consensus pattern (19 bp):
TTTAAAAAATAAATAAAAT
Done.