Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Scaffold1098
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 88488
ACGTcount: A:0.22, C:0.28, G:0.27, T:0.23
Found at i:7776 original size:62 final size:60
Alignment explanation
Indices: 7582--7784 Score: 182
Period size: 62 Copynumber: 3.2 Consensus size: 60
7572 CGGCAACTGT
*
7582 GCGCACCCGGTGCTCCCCACGGTGTGCGCCGCGACCGCCCCC-ACCCCAGGGGGCGGGAAGGGC
1 GCGCA-CC-GTGCTCCGCACGG-GTGCGCCGCGACCGCCCCCGACCCCAGGGGGCGGG-AGGGC
* *
7645 GCGCACCGTGCTCCTGGC-CGGGTGCGTGCCGCGGCCG-CCCCGCACCCCCCAGGGTGG-GCGA-
1 GCGCACCGTGCTCC--GCACGGGTGC--GCCGCGACCGCCCCCG-A--CCCCAGGG-GGCGGGAG
7706 GGC
58 GGC
* * *
7709 GCGCACCGTGCTCCGCATGGCGTGCGCCCCGCCCGCCCCCGACCCCAGGGGGCGGGATGGGC
1 GCGCACCGTGCTCCGCACGG-GTGCGCCGCGACCGCCCCCGACCCCAGGGGGCGGGA-GGGC
*
7771 GCGCACCGTTCTCC
1 GCGCACCGTGCTCC
7785 CGCCCGCAGC
Statistics
Matches: 117, Mismatches: 8, Indels: 31
0.75 0.05 0.20
Matches are distributed among these distances:
59 2 0.02
60 11 0.09
61 11 0.09
62 36 0.31
63 22 0.19
64 22 0.19
65 1 0.01
66 10 0.09
67 2 0.02
ACGTcount: A:0.08, C:0.45, G:0.38, T:0.09
Consensus pattern (60 bp):
GCGCACCGTGCTCCGCACGGGTGCGCCGCGACCGCCCCCGACCCCAGGGGGCGGGAGGGC
Found at i:7873 original size:102 final size:102
Alignment explanation
Indices: 7695--7881 Score: 315
Period size: 102 Copynumber: 1.8 Consensus size: 102
7685 CGCACCCCCC
* *
7695 AGGGTGGGCGAGGCGCGCACCGTGCTCCGCATGGCGTGCGCCCCGCCCGCCCCCGACCCCAGGGG
1 AGGGTGGGCGAGGCGCGCACCGTGCTCCGCATGGCGTGCGCCCCGACCGCCCCCGACACCAGGGG
7760 GCGGGATGGGCGCGCACCGTTCTCCCGCCCGCAGCCG
66 GCGGGATGGGCGCGCACCGTTCTCCCGCCCGCAGCCG
*
7797 AGGGTGGGCGAGGCGCGCACCGGTGCTCCGCATGGTGTGCGCCCCGACCGCCCCC-ACACCAGGG
1 AGGGTGGGCGAGGCGCGCACC-GTGCTCCGCATGGCGTGCGCCCCGACCGCCCCCGACACCAGGG
7861 GGCGGGCA-GGGCGCGCACCGT
65 GGCGGG-ATGGGCGCGCACCGT
7882 GCACCTGGCC
Statistics
Matches: 80, Mismatches: 3, Indels: 4
0.92 0.03 0.05
Matches are distributed among these distances:
102 48 0.60
103 32 0.40
ACGTcount: A:0.10, C:0.41, G:0.41, T:0.09
Consensus pattern (102 bp):
AGGGTGGGCGAGGCGCGCACCGTGCTCCGCATGGCGTGCGCCCCGACCGCCCCCGACACCAGGGG
GCGGGATGGGCGCGCACCGTTCTCCCGCCCGCAGCCG
Found at i:8321 original size:64 final size:64
Alignment explanation
Indices: 8220--8341 Score: 199
Period size: 64 Copynumber: 1.9 Consensus size: 64
8210 CACCGATAGC
*
8220 ACATGCGGAGGCCCAAGCGTGGGCAACGAGTCCCTCCCAACCATCCGGCCCTCCCCCCTCTCTA
1 ACATGCGGAGGCCCAAGCGTGCGCAACGAGTCCCTCCCAACCATCCGGCCCTCCCCCCTCTCTA
* * * *
8284 ACATGCGGAGGGCCAAGCGTGCGCAACGAGTCCCTCCCCAGCATCCGTCCCTCCCCCC
1 ACATGCGGAGGCCCAAGCGTGCGCAACGAGTCCCTCCCAACCATCCGGCCCTCCCCCC
8342 CAACCAAACG
Statistics
Matches: 53, Mismatches: 5, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
64 53 1.00
ACGTcount: A:0.18, C:0.46, G:0.23, T:0.13
Consensus pattern (64 bp):
ACATGCGGAGGCCCAAGCGTGCGCAACGAGTCCCTCCCAACCATCCGGCCCTCCCCCCTCTCTA
Found at i:8589 original size:63 final size:62
Alignment explanation
Indices: 8401--8595 Score: 200
Period size: 63 Copynumber: 3.1 Consensus size: 62
8391 CGACAACGGT
* *
8401 GCGCACCCGGTGCCCCGCGAGGTGTGCGCCCCGACCGCCCCCACCCCAGGGGGCGGGAAGGGC
1 GCGCA-CCGGCGCCCCGCGAGGTGCGCGCCCCGACCGCCCCCACCCCAGGGGGCGGGAAGGGC
* * * * * * * * * *
8464 GCGCCCCGTGCTCCCGCCCG-GGTCCGTGCCGCGGCCGCCCGCA--CCAGAGGGCGGG-CGAGGC
1 GCGCACCG-GCGCCC-CGCGAGGTGCGCGCCCCGACCGCCCCCACCCCAGGGGGCGGGAAG-GGC
*
8525 GCGCACCGGCGCCCCGCGAGGTGGGCGCCCCGACCGCCCCCCACCCCAGGGGGCGGGAAGGGC
1 GCGCACCGGCGCCCCGCGAGGTGCGCGCCCCGACCG-CCCCCACCCCAGGGGGCGGGAAGGGC
8588 GCGCACCG
1 GCGCACCG
8596 TGCTCCTGGC
Statistics
Matches: 101, Mismatches: 23, Indels: 16
0.72 0.16 0.11
Matches are distributed among these distances:
59 3 0.03
60 18 0.18
61 26 0.26
62 3 0.03
63 47 0.47
64 4 0.04
ACGTcount: A:0.10, C:0.46, G:0.41, T:0.04
Consensus pattern (62 bp):
GCGCACCGGCGCCCCGCGAGGTGCGCGCCCCGACCGCCCCCACCCCAGGGGGCGGGAAGGGC
Found at i:8623 original size:103 final size:101
Alignment explanation
Indices: 8502--8690 Score: 297
Period size: 103 Copynumber: 1.9 Consensus size: 101
8492 CCGCGGCCGC
8502 CCGCACCAGAGGGCGGGCGAGGCGCGCACCGGCGCCCCGCGAGGTGGGCGCCCCGACCGCCCCCC
1 CCGCACCAGAGGGCGGGCGAGGCGCGCACCGGCGCCCCGCGAGGTGGGCGCCCCGACCG-CCCCC
*
8567 ACCCCAGGGGGCGGGAAGGGCGCGCACCGTGCTCCTGG
65 ACCAC-GGGGGCGGGAAGGGCGCGCACCGTGCTCCTGG
* * * * * *
8605 CCGCACCCGAGGGTGGGCGAGGCGCGCACCGGCGCTCCGCGTGGTGTGCGCCCCGGCCGCCCCCA
1 CCGCACCAGAGGGCGGGCGAGGCGCGCACCGGCGCCCCGCGAGGTGGGCGCCCCGACCGCCCCCA
8670 CCACGGGGGCGGGAAGGGCGC
66 CCACGGGGGCGGGAAGGGCGC
8691 CCCCGGGCCG
Statistics
Matches: 79, Mismatches: 7, Indels: 2
0.90 0.08 0.02
Matches are distributed among these distances:
101 17 0.22
102 9 0.11
103 53 0.67
ACGTcount: A:0.11, C:0.42, G:0.43, T:0.05
Consensus pattern (101 bp):
CCGCACCAGAGGGCGGGCGAGGCGCGCACCGGCGCCCCGCGAGGTGGGCGCCCCGACCGCCCCCA
CCACGGGGGCGGGAAGGGCGCGCACCGTGCTCCTGG
Found at i:10680 original size:402 final size:403
Alignment explanation
Indices: 9700--10981 Score: 2056
Period size: 402 Copynumber: 3.2 Consensus size: 403
9690 AAACCTTGTC
* * ** * *
9700 GCGGTGATGGAGACCCTGCGCGGTCCAGGTGATCCGTGGCAAGGTCCCCGGTCGCCGTATGCTGC
1 GCGGTGATGGAGACCCTACGCGGTCCAAGTGATCCGTGGTGAGGCCCCCGGTCG-C-TACG-TGC
* * * * * * *
9765 -CGATCGCATGGCACGCGTGTGTGGGGCACAAGGGGCGTGGTCGTGCCGTAGGGTTAA-GCTTC-
63 GCGATCGCTTGGCACGCGTGTG-CGGGTA-ACGGGGCGTGGTCGTGCCGGAAGG-CAAGGC-TCG
* *
9827 CACCTGCGCTGATTCTGCCAAGTTCCCGAATTCGAGTTGGTAGTCCCGGTTGTGGCGTGGGCAGA
124 CACCTGCGGTGATTCTGCCAAGTTCCCGAATTCGAGTAGGTAGTCCCGGTTGTGGCGTGGGCAGA
* *
9892 AGCTGCAGGTG-GGGCTTGGCCTGGCCATGCCCCGT-GAGCAGGGGCAGTCTCGCGGCCCTTGCT
189 AGCTGCAGGTGAGGGCTTGGCCTGGCCATGCCCC-TCGAGCAGGGGCAGTCTCGTGGCCCTTGCA
* * * * * *
9955 TCGGCAACGGTGGGCTCGTCCCGCCGGTTGTCTGTCGGGGATTGTGCTCGATGCGCCTGGCATTG
253 TCGGCAACGGTGGGCACGTCCTGCCGGTTGCCTGTCGGGGATTGCGCTCCATGCGCCTGGCATGG
* * * *
10020 ATCGCGCCCCGGCAGAGTGTCCCTCTCGGTTAAGATCCAGGTCGCGCGTGCCTTGCGATCGTGGT
318 TTCGCGCCCCGGC--AGTGTCCCTCTCGATTAAAATCCAGGTCGCGCGAGCCTTGCGATCGTGGT
*
10085 TTTCGGTGGCCGGATGCCCAGCT
381 TTTCGGTGACCGGATGCCCAGCT
* * ** * *
10108 GCGGTGACGG-GACCCTTCGCGGTCCAAGTGATCCGTGGTGAGGCCGTCGGTCTCTGCGTGCGCG
1 GCGGTGATGGAGACCCTACGCGGTCCAAGTGATCCGTGGTGAGGCCCCCGGTCGCTACGTGCGCG
*
10172 ATCGGTTGGCACGCGTGTGCGGGTAACGGGGCGTGGTCGTGCCGGAAGGCAAGGCTCGCACCTGC
66 ATCGCTTGGCACGCGTGTGCGGGTAACGGGGCGTGGTCGTGCCGGAAGGCAAGGCTCGCACCTGC
* * *
10237 GGTGATGCTGCCAAGTTCCCGAATTCGAGTCGGTAGTCCCGGTTGTGGCGTGGGCAGAGGCTGCA
131 GGTGATTCTGCCAAGTTCCCGAATTCGAGTAGGTAGTCCCGGTTGTGGCGTGGGCAGAAGCTGCA
10302 GGTGAGGGCTTGGCCTGGCCATGCCCCTCGAGCAGGGGCAGTCTCGTGGCCCTTGCATCGGCAAC
196 GGTGAGGGCTTGGCCTGGCCATGCCCCTCGAGCAGGGGCAGTCTCGTGGCCCTTGCATCGGCAAC
10367 GGTGGGCACGTCCTGCCGGTTGCCTGTCGGGGATTGCGCTCCATGCGCCTGGCATGGTTCGCGCC
261 GGTGGGCACGTCCTGCCGGTTGCCTGTCGGGGATTGCGCTCCATGCGCCTGGCATGGTTCGCGCC
10432 CCGGCAGTGTCCCTCTCGATTAAAATCCAGGTCGCGCGAGCCTTGCGATCGTGGTTTTCGGTGAC
326 CCGGCAGTGTCCCTCTCGATTAAAATCCAGGTCGCGCGAGCCTTGCGATCGTGGTTTTCGGTGAC
10497 CGGATGCCCAGCT
391 CGGATGCCCAGCT
10510 GCGGTGATGGAGACCCTACGCGGTCCAAGTGATCCGTGGTGAGGCCCCCGGTCGCTACGTGCGCG
1 GCGGTGATGGAGACCCTACGCGGTCCAAGTGATCCGTGGTGAGGCCCCCGGTCGCTACGTGCGCG
*
10575 ATCGTTTGGCACGCGTGTGCGGGTAACGGGGCGTGGTC-TGCCGGAAGGCAAGGCTCGCACCTGC
66 ATCGCTTGGCACGCGTGTGCGGGTAACGGGGCGTGGTCGTGCCGGAAGGCAAGGCTCGCACCTGC
*
10639 GGTGATTCTGCCAAGTTCCCGAATTCGAGTAGGTTGTCCCGGTTGTGGCGTGGGCAGAAGCTGCA
131 GGTGATTCTGCCAAGTTCCCGAATTCGAGTAGGTAGTCCCGGTTGTGGCGTGGGCAGAAGCTGCA
*
10704 GGTGAGGGCTTGGCCTGGCCATGCCCCTCGGGCAGGGGCAGTCTCGTGGCCCTTGCATCGGCAAC
196 GGTGAGGGCTTGGCCTGGCCATGCCCCTCGAGCAGGGGCAGTCTCGTGGCCCTTGCATCGGCAAC
10769 GGTGGGCACGTCCTGCCGGTTGCCTGTCGGGGATTGCGCTCCATGCGCCTGGCATGGTTCGCGCC
261 GGTGGGCACGTCCTGCCGGTTGCCTGTCGGGGATTGCGCTCCATGCGCCTGGCATGGTTCGCGCC
10834 CCGGCAGTGTCCCTCTCGATTAAAATCCAGGTCGCGCGAGCCTTGCGATCGTGGTTTTCGGTGAC
326 CCGGCAGTGTCCCTCTCGATTAAAATCCAGGTCGCGCGAGCCTTGCGATCGTGGTTTTCGGTGAC
10899 CGGATGCCCAGCT
391 CGGATGCCCAGCT
10912 GCGGTGATGGAGACCCTACGCGGTCCAAGTGATCCGTGGTGAGGCCCCCGGTCGCTACGTGCGCG
1 GCGGTGATGGAGACCCTACGCGGTCCAAGTGATCCGTGGTGAGGCCCCCGGTCGCTACGTGCGCG
10977 ATCGC
66 ATCGC
10982 AAGGCTCGCA
Statistics
Matches: 819, Mismatches: 49, Indels: 18
0.92 0.06 0.02
Matches are distributed among these distances:
402 445 0.54
403 182 0.22
404 126 0.15
405 21 0.03
406 1 0.00
407 35 0.04
408 9 0.01
ACGTcount: A:0.12, C:0.29, G:0.37, T:0.21
Consensus pattern (403 bp):
GCGGTGATGGAGACCCTACGCGGTCCAAGTGATCCGTGGTGAGGCCCCCGGTCGCTACGTGCGCG
ATCGCTTGGCACGCGTGTGCGGGTAACGGGGCGTGGTCGTGCCGGAAGGCAAGGCTCGCACCTGC
GGTGATTCTGCCAAGTTCCCGAATTCGAGTAGGTAGTCCCGGTTGTGGCGTGGGCAGAAGCTGCA
GGTGAGGGCTTGGCCTGGCCATGCCCCTCGAGCAGGGGCAGTCTCGTGGCCCTTGCATCGGCAAC
GGTGGGCACGTCCTGCCGGTTGCCTGTCGGGGATTGCGCTCCATGCGCCTGGCATGGTTCGCGCC
CCGGCAGTGTCCCTCTCGATTAAAATCCAGGTCGCGCGAGCCTTGCGATCGTGGTTTTCGGTGAC
CGGATGCCCAGCT
Found at i:11279 original size:358 final size:358
Alignment explanation
Indices: 10622--11338 Score: 1434
Period size: 358 Copynumber: 2.0 Consensus size: 358
10612 CTGCCGGAAG
10622 GCAAGGCTCGCACCTGCGGTGATTCTGCCAAGTTCCCGAATTCGAGTAGGTTGTCCCGGTTGTGG
1 GCAAGGCTCGCACCTGCGGTGATTCTGCCAAGTTCCCGAATTCGAGTAGGTTGTCCCGGTTGTGG
10687 CGTGGGCAGAAGCTGCAGGTGAGGGCTTGGCCTGGCCATGCCCCTCGGGCAGGGGCAGTCTCGTG
66 CGTGGGCAGAAGCTGCAGGTGAGGGCTTGGCCTGGCCATGCCCCTCGGGCAGGGGCAGTCTCGTG
10752 GCCCTTGCATCGGCAACGGTGGGCACGTCCTGCCGGTTGCCTGTCGGGGATTGCGCTCCATGCGC
131 GCCCTTGCATCGGCAACGGTGGGCACGTCCTGCCGGTTGCCTGTCGGGGATTGCGCTCCATGCGC
10817 CTGGCATGGTTCGCGCCCCGGCAGTGTCCCTCTCGATTAAAATCCAGGTCGCGCGAGCCTTGCGA
196 CTGGCATGGTTCGCGCCCCGGCAGTGTCCCTCTCGATTAAAATCCAGGTCGCGCGAGCCTTGCGA
10882 TCGTGGTTTTCGGTGACCGGATGCCCAGCTGCGGTGATGGAGACCCTACGCGGTCCAAGTGATCC
261 TCGTGGTTTTCGGTGACCGGATGCCCAGCTGCGGTGATGGAGACCCTACGCGGTCCAAGTGATCC
10947 GTGGTGAGGCCCCCGGTCGCTACGTGCGCGATC
326 GTGGTGAGGCCCCCGGTCGCTACGTGCGCGATC
10980 GCAAGGCTCGCACCTGCGGTGATTCTGCCAAGTTCCCGAATTCGAGTAGGTTGTCCCGGTTGTGG
1 GCAAGGCTCGCACCTGCGGTGATTCTGCCAAGTTCCCGAATTCGAGTAGGTTGTCCCGGTTGTGG
11045 CGTGGGCAGAAGCTGCAGGTGAGGGCTTGGCCTGGCCATGCCCCTCGGGCAGGGGCAGTCTCGTG
66 CGTGGGCAGAAGCTGCAGGTGAGGGCTTGGCCTGGCCATGCCCCTCGGGCAGGGGCAGTCTCGTG
11110 GCCCTTGCATCGGCAACGGTGGGCACGTCCTGCCGGTTGCCTGTCGGGGATTGCGCTCCATGCGC
131 GCCCTTGCATCGGCAACGGTGGGCACGTCCTGCCGGTTGCCTGTCGGGGATTGCGCTCCATGCGC
11175 CTGGCATGGTTCGCGCCCCGGCAGTGTCCCTCTCGATTAAAATCCAGGTCGCGCGAGCCTTGCGA
196 CTGGCATGGTTCGCGCCCCGGCAGTGTCCCTCTCGATTAAAATCCAGGTCGCGCGAGCCTTGCGA
11240 TCGTGGTTTTCGGTGACCGGATGCCCAGCTGCGGTGATGGAGACCCTACGCGGTCCAAGTGATCC
261 TCGTGGTTTTCGGTGACCGGATGCCCAGCTGCGGTGATGGAGACCCTACGCGGTCCAAGTGATCC
11305 GTGGTGAGGCCCCCGGTCGCTACGTGCGCGATC
326 GTGGTGAGGCCCCCGGTCGCTACGTGCGCGATC
11338 G
1 G
11339 TTTGGCACGC
Statistics
Matches: 359, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
358 359 1.00
ACGTcount: A:0.13, C:0.30, G:0.35, T:0.21
Consensus pattern (358 bp):
GCAAGGCTCGCACCTGCGGTGATTCTGCCAAGTTCCCGAATTCGAGTAGGTTGTCCCGGTTGTGG
CGTGGGCAGAAGCTGCAGGTGAGGGCTTGGCCTGGCCATGCCCCTCGGGCAGGGGCAGTCTCGTG
GCCCTTGCATCGGCAACGGTGGGCACGTCCTGCCGGTTGCCTGTCGGGGATTGCGCTCCATGCGC
CTGGCATGGTTCGCGCCCCGGCAGTGTCCCTCTCGATTAAAATCCAGGTCGCGCGAGCCTTGCGA
TCGTGGTTTTCGGTGACCGGATGCCCAGCTGCGGTGATGGAGACCCTACGCGGTCCAAGTGATCC
GTGGTGAGGCCCCCGGTCGCTACGTGCGCGATC
Found at i:16901 original size:418 final size:404
Alignment explanation
Indices: 16105--16905 Score: 1081
Period size: 418 Copynumber: 1.9 Consensus size: 404
16095 CACTCAGCCC
* *
16105 GGGCGCGATCCATGCCAGGCGCATGGAGCGCAATCCCCGACGGCCAACCGGCAGGACGAACCCAG
1 GGGCGCGAACCATGCCAGGCGCATGGAGCGCAATCCCCGACGGCCAACCGGCAGGACGAACCCAC
*
16170 CGTTGCCGATGCAAGGGCCGCGAGACTGCCCCTGCTCGAGGGGCAACGGCCAGGCCAAGCCCGCA
66 CGTTGCCGATGCAAGGGCCACGAGACTGCCCCTGCTCGAGGGGCAACGGCCAGGCCAAGCCCGCA
16235 CCTGCAGCATCTGCCTGCACCACAACCGGGACCATCCACTCGAATTCGAGAACTTGGCAGCATCA
131 CCTGCAGCATCTGCCTGCACCACAACCGGGACCATCCACTCGAATTCGAGAACTTGGCAGCATCA
* * *
16300 CCGCAGGAGCAAGCCTAACCTTCCGGCACGACCACGCCCCGTTACCCACACACGCGTGCCAAGCG
196 CCGCAGGAGCAAGCCTAACCTTCCGGCACGACCACGCCCCATTACCCACACACGCGGGCCAACCG
* * * * *
16365 ATCGCGCACGTAGCGACCGGGGGCCTCACCACGGATCACTTGGACCGCGTAGGGCCTTCATCACC
261 ATCGAGCACATAGCGACCGGGGACCTCACCACGGATCACTTGGACCGCGAAGGGCCTCCATCACC
*
16430 GCAGCTGGGCATCCGGTCACCGAAAACCACGATCGCAAGGCTCGCGCGACCTGGATTTTAATCGA
326 GCAGCTGGGCATCCGGTCACCGAAAACCACGATCGCAAGGCTCGCACGACCTGGATTTTAATCGA
16495 GAGGGACACTGCCG
391 GAGGGACACTGCCG
**
16509 GGGCGCGAACCATGCCAGGCGCATGGAGCGCAATCCCCGACAGG-CAACCGGCAGGACGTGCCCA
1 GGGCGCGAACCATGCCAGGCGCATGGAGCGCAATCCCCGAC-GGCCAACCGGCAGGACGAACCCA
* * *
16573 CCGTTGCCGATGCAAGGGCCACGAGACTGCCCTTGCTCGAGGGGC-ATGGCCAGGCCAAGCCCTC
65 CCGTTGCCGATGCAAGGGCCACGAGACTGCCCCTGCTCGAGGGGCAACGGCCAGGCCAAGCCCGC
* * * *
16637 ACCTGCAGCTTCTGCGC-GCGCCACAACCGGGACCCTCTACTCGATTAGGGGGCTTGGTCCTG-G
130 ACCTGCAGCATCTGC-CTGCACCACAACCGGGACCATCCACTCGA--A-------T--T-C-GAG
* * ** * * * * * *
16700 AGTCGTTGGCGGCATCGGCGCAGGTGCGAGCTTAACCTTCCGGCAGGACCACGCCTCATCTCCCC
181 A-AC-TTGGCAGCATCACCGCAGGAGCAAGCCTAACCTTCCGGCACGACCACGCCCCAT-TACCC
* * *
16765 ACACACGCGGGCCAACCGATCGAGCACATGGTGACCGGGGACCTCGCCACGGATCACTTGGACCG
243 ACACACGCGGGCCAACCGATCGAGCACATAGCGACCGGGGACCTCACCACGGATCACTTGGACCG
16830 CGAAGGGCCTCCATCACCGCAGCTGGGCATCCGGTCACCGAAAACCACGATCGCAAGGCAT-GCA
308 CGAAGGGCCTCCATCACCGCAGCTGGGCATCCGGTCACCGAAAACCACGATCGCAAGGC-TCGCA
*
16894 TGACCTGGATTT
372 CGACCTGGATTT
16906 CACACGAGGC
Statistics
Matches: 343, Mismatches: 35, Indels: 24
0.85 0.09 0.06
Matches are distributed among these distances:
403 55 0.16
404 101 0.29
405 3 0.01
412 1 0.00
414 1 0.00
415 3 0.01
416 2 0.01
417 45 0.13
418 131 0.38
419 1 0.00
ACGTcount: A:0.21, C:0.36, G:0.30, T:0.13
Consensus pattern (404 bp):
GGGCGCGAACCATGCCAGGCGCATGGAGCGCAATCCCCGACGGCCAACCGGCAGGACGAACCCAC
CGTTGCCGATGCAAGGGCCACGAGACTGCCCCTGCTCGAGGGGCAACGGCCAGGCCAAGCCCGCA
CCTGCAGCATCTGCCTGCACCACAACCGGGACCATCCACTCGAATTCGAGAACTTGGCAGCATCA
CCGCAGGAGCAAGCCTAACCTTCCGGCACGACCACGCCCCATTACCCACACACGCGGGCCAACCG
ATCGAGCACATAGCGACCGGGGACCTCACCACGGATCACTTGGACCGCGAAGGGCCTCCATCACC
GCAGCTGGGCATCCGGTCACCGAAAACCACGATCGCAAGGCTCGCACGACCTGGATTTTAATCGA
GAGGGACACTGCCG
Found at i:18276 original size:358 final size:358
Alignment explanation
Indices: 17619--18335 Score: 1434
Period size: 358 Copynumber: 2.0 Consensus size: 358
17609 GCGTGCCAAA
17619 CGATCGCGCACGTAGCGACCGGGGGCCTCACCACGGATCACTTGGACCGCGTAGGGTCTCCATCA
1 CGATCGCGCACGTAGCGACCGGGGGCCTCACCACGGATCACTTGGACCGCGTAGGGTCTCCATCA
17684 CCGCAGCTGGGCATCCGGTCACCGAAAACCACGATCGCAAGGCTCGCGCGACCTGGATTTTAATC
66 CCGCAGCTGGGCATCCGGTCACCGAAAACCACGATCGCAAGGCTCGCGCGACCTGGATTTTAATC
17749 GAGAGGGACACTGCCGGGGCGCGAACCATGCCAGGCGCATGGAGCGCAATCCCCGACAGGCAACC
131 GAGAGGGACACTGCCGGGGCGCGAACCATGCCAGGCGCATGGAGCGCAATCCCCGACAGGCAACC
17814 GGCAGGACGTGCCCACCGTTGCCGATGCAAGGGCCACGAGACTGCCCCTGCCCGAGGGGCATGGC
196 GGCAGGACGTGCCCACCGTTGCCGATGCAAGGGCCACGAGACTGCCCCTGCCCGAGGGGCATGGC
17879 CAGGCCAAGCCCTCACCTGCAGCTTCTGCCCACGCCACAACCGGGACAACCTACTCGAATTCGGG
261 CAGGCCAAGCCCTCACCTGCAGCTTCTGCCCACGCCACAACCGGGACAACCTACTCGAATTCGGG
17944 AACTTGGCAGAATCACCGCAGGTGCGAGCCTTG
326 AACTTGGCAGAATCACCGCAGGTGCGAGCCTTG
17977 CGATCGCGCACGTAGCGACCGGGGGCCTCACCACGGATCACTTGGACCGCGTAGGGTCTCCATCA
1 CGATCGCGCACGTAGCGACCGGGGGCCTCACCACGGATCACTTGGACCGCGTAGGGTCTCCATCA
18042 CCGCAGCTGGGCATCCGGTCACCGAAAACCACGATCGCAAGGCTCGCGCGACCTGGATTTTAATC
66 CCGCAGCTGGGCATCCGGTCACCGAAAACCACGATCGCAAGGCTCGCGCGACCTGGATTTTAATC
18107 GAGAGGGACACTGCCGGGGCGCGAACCATGCCAGGCGCATGGAGCGCAATCCCCGACAGGCAACC
131 GAGAGGGACACTGCCGGGGCGCGAACCATGCCAGGCGCATGGAGCGCAATCCCCGACAGGCAACC
18172 GGCAGGACGTGCCCACCGTTGCCGATGCAAGGGCCACGAGACTGCCCCTGCCCGAGGGGCATGGC
196 GGCAGGACGTGCCCACCGTTGCCGATGCAAGGGCCACGAGACTGCCCCTGCCCGAGGGGCATGGC
18237 CAGGCCAAGCCCTCACCTGCAGCTTCTGCCCACGCCACAACCGGGACAACCTACTCGAATTCGGG
261 CAGGCCAAGCCCTCACCTGCAGCTTCTGCCCACGCCACAACCGGGACAACCTACTCGAATTCGGG
18302 AACTTGGCAGAATCACCGCAGGTGCGAGCCTTG
326 AACTTGGCAGAATCACCGCAGGTGCGAGCCTTG
18335 C
1 C
18336 CTTCCGGCAG
Statistics
Matches: 359, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
358 359 1.00
ACGTcount: A:0.21, C:0.35, G:0.30, T:0.13
Consensus pattern (358 bp):
CGATCGCGCACGTAGCGACCGGGGGCCTCACCACGGATCACTTGGACCGCGTAGGGTCTCCATCA
CCGCAGCTGGGCATCCGGTCACCGAAAACCACGATCGCAAGGCTCGCGCGACCTGGATTTTAATC
GAGAGGGACACTGCCGGGGCGCGAACCATGCCAGGCGCATGGAGCGCAATCCCCGACAGGCAACC
GGCAGGACGTGCCCACCGTTGCCGATGCAAGGGCCACGAGACTGCCCCTGCCCGAGGGGCATGGC
CAGGCCAAGCCCTCACCTGCAGCTTCTGCCCACGCCACAACCGGGACAACCTACTCGAATTCGGG
AACTTGGCAGAATCACCGCAGGTGCGAGCCTTG
Found at i:19110 original size:403 final size:403
Alignment explanation
Indices: 17977--19257 Score: 2054
Period size: 402 Copynumber: 3.2 Consensus size: 403
17967 GCGAGCCTTG
17977 CGATCGCGCACGTAGCGACCGGGGGCCTCACCACGGATCACTTGGACCGCGTAGGGTCTCCATCA
1 CGATCGCGCACGTAGCGACCGGGGGCCTCACCACGGATCACTTGGACCGCGTAGGGTCTCCATCA
18042 CCGCAGCTGGGCATCCGGTCACCGAAAACCACGATCGCAAGGCTCGCGCGACCTGGATTTTAATC
66 CCGCAGCTGGGCATCCGGTCACCGAAAACCACGATCGCAAGGCTCGCGCGACCTGGATTTTAATC
18107 GAGAGGGACACTGCCGGGGCGCGAACCATGCCAGGCGCATGGAGCGCAATCCCCGACAGGCAACC
131 GAGAGGGACACTGCCGGGGCGCGAACCATGCCAGGCGCATGGAGCGCAATCCCCGACAGGCAACC
*
18172 GGCAGGACGTGCCCACCGTTGCCGATGCAAGGGCCACGAGACTGCCCCTGCCCGAGGGGCATGGC
196 GGCAGGACGTGCCCACCGTTGCCGATGCAAGGGCCACGAGACTGCCCCTGCTCGAGGGGCATGGC
* *
18237 CAGGCCAAGCCCTCACCTGCAGCTTCTGCCCACGCCACAACCGGGACAACCTACTCGAATTCGGG
261 CAGGCCAAGCCCTCACCTGCAGCTTCTGCCCACGCCACAACCGGGACTACCAACTCGAATTCGGG
18302 AACTTGGCAGAATCACCGCAGGTGCGAGCCTTGCCTTCCGGCA-GACCACGCCCCGTTACCCGCA
326 AACTTGGCAGAATCACCGCAGGTGCGAGCCTTGCCTTCCGGCACGACCACGCCCCGTTACCCGCA
18366 CACGCGTGCCAAA
391 CACGCGTGCCAAA
18379 CGATCGCGCACGTAGCGACCGGGGGCCTCACCACGGATCACTTGGACCGCGTAGGGTCTCCATCA
1 CGATCGCGCACGTAGCGACCGGGGGCCTCACCACGGATCACTTGGACCGCGTAGGGTCTCCATCA
18444 CCGCAGCTGGGCATCCGGTCACCGAAAACCACGATCGCAAGGCTCGCGCGACCTGGATTTTAATC
66 CCGCAGCTGGGCATCCGGTCACCGAAAACCACGATCGCAAGGCTCGCGCGACCTGGATTTTAATC
18509 GAGAGGGACACTGCCGGGGCGCGAACCATGCCAGGCGCATGGAGCGCAATCCCCGACAGGCAACC
131 GAGAGGGACACTGCCGGGGCGCGAACCATGCCAGGCGCATGGAGCGCAATCCCCGACAGGCAACC
18574 GGCAGGACGTGCCCACCGTTGCCGATGCAAGGGCCACGAGACTGCCCCTGCTCGAGGGGCATGGC
196 GGCAGGACGTGCCCACCGTTGCCGATGCAAGGGCCACGAGACTGCCCCTGCTCGAGGGGCATGGC
* *
18639 CAGGCCAAGCCCTCACCTGCAGCCTCTGCCCACGCCACAACCGGGACTACCGACTCGAATTCGGG
261 CAGGCCAAGCCCTCACCTGCAGCTTCTGCCCACGCCACAACCGGGACTACCAACTCGAATTCGGG
*
18704 AACTTGGCAGCATCACCGCAGGTGCGAGCCTTGCCTTCCGGCACGACCACGCCCCGTTACCCGCA
326 AACTTGGCAGAATCACCGCAGGTGCGAGCCTTGCCTTCCGGCACGACCACGCCCCGTTACCCGCA
*
18769 CACGCGTGCCAAC
391 CACGCGTGCCAAA
* * ** * *
18782 CGATCGCGCACGCAGAGACCGACGGCCTCACCACGGATCACTTGGACCGCGAAGGGTC-CCGTCA
1 CGATCGCGCACGTAGCGACCGGGGGCCTCACCACGGATCACTTGGACCGCGTAGGGTCTCCATCA
* * * *
18846 CCGCAGCTGGGCATCCGGCCACCGAAAACCACGATCGCAAGGCACGCGCGACCTGGATCTTAACC
66 CCGCAGCTGGGCATCCGGTCACCGAAAACCACGATCGCAAGGCTCGCGCGACCTGGATTTTAATC
* * * * *
18911 GAGAGGGACACTCTGCCGGGGCGCGATCAATGCCAGGCGCATCGAGCACAATCCCCGACAGACAA
131 GAGAGGGACA--CTGCCGGGGCGCGAACCATGCCAGGCGCATGGAGCGCAATCCCCGACAGGCAA
* * * *
18976 CCGGCGGGACGAGCCCACCGTTGCCGAAGCAAGGGCCGCGAGACTGCCCCTGCTC-ACGGGGCAT
194 CCGGCAGGACGTGCCCACCGTTGCCGATGCAAGGGCCACGAGACTGCCCCTGCTCGA-GGGGCAT
19040 GGCCAGGCCAAGCCC-CACCTGCAGCTTCTGCCCACGCCACAACCGGGACTACCAACTCGAATTC
258 GGCCAGGCCAAGCCCTCACCTGCAGCTTCTGCCCACGCCACAACCGGGACTACCAACTCGAATTC
* * * * *
19104 GGGAACTTGGCAGAATCAGCGCAGGTG-GAAG-CTTAACCCTACGGCACGACCACGCCCCTTGTG
323 GGGAACTTGGCAGAATCACCGCAGGTGCG-AGCCTT-GCCTTCCGGCACGACCACGCCCC--GTT
* * **
19167 CCCCACACACGCGTGCCATG
384 ACCCGCACACGCGTGCCAAA
* * ** * *
19187 CGATCG-GCAGCATACGGCGACCGGGGACCTTGCCACGGATCACCTGGACCGCGCAGGGTCTCCA
1 CGATCGCGCA-CGTA--GCGACCGGGGGCCTCACCACGGATCACTTGGACCGCGTAGGGTCTCCA
19251 TCACCGC
63 TCACCGC
19258 GACAAGGTTT
Statistics
Matches: 819, Mismatches: 48, Indels: 18
0.93 0.05 0.02
Matches are distributed among these distances:
402 443 0.54
403 181 0.22
404 124 0.15
405 26 0.03
407 36 0.04
408 9 0.01
ACGTcount: A:0.21, C:0.37, G:0.29, T:0.12
Consensus pattern (403 bp):
CGATCGCGCACGTAGCGACCGGGGGCCTCACCACGGATCACTTGGACCGCGTAGGGTCTCCATCA
CCGCAGCTGGGCATCCGGTCACCGAAAACCACGATCGCAAGGCTCGCGCGACCTGGATTTTAATC
GAGAGGGACACTGCCGGGGCGCGAACCATGCCAGGCGCATGGAGCGCAATCCCCGACAGGCAACC
GGCAGGACGTGCCCACCGTTGCCGATGCAAGGGCCACGAGACTGCCCCTGCTCGAGGGGCATGGC
CAGGCCAAGCCCTCACCTGCAGCTTCTGCCCACGCCACAACCGGGACTACCAACTCGAATTCGGG
AACTTGGCAGAATCACCGCAGGTGCGAGCCTTGCCTTCCGGCACGACCACGCCCCGTTACCCGCA
CACGCGTGCCAAA
Found at i:20419 original size:103 final size:101
Alignment explanation
Indices: 20267--20455 Score: 297
Period size: 103 Copynumber: 1.9 Consensus size: 101
20257 CGGCCCGGGG
*
20267 GCGCCCTTCCCGCCCCCGTGGTGGGGGCGGCCGGGGCGCACACCACGCGGAGCGCCGGTGCGCGC
1 GCGCCCTTCCCGCCCCCGGGGTGGGGGCGGCCGGGGCGCACACCACGCGGAGCGCCGGTGCGCGC
20332 CTCGCCCACCCTCGGGTGCGGCCAGGAGCACGGTGC
66 CTCGCCCACCCTCGGGTGCGGCCAGGAGCACGGTGC
* * * *
20368 GCGCCCTTCCCGCCCCCTGGGGTGGGGGGCGGTCGGGGCGCCCACCTCGCGGGGCGCCGGTGCGC
1 GCGCCCTTCCCGCCCCC-GGGGT-GGGGGCGGCCGGGGCGCACACCACGCGGAGCGCCGGTGCGC
* *
20433 GCCTCGCCCGCCCTCTGGTGCGG
64 GCCTCGCCCACCCTCGGGTGCGG
20456 GCGGCCGCGG
Statistics
Matches: 79, Mismatches: 7, Indels: 2
0.90 0.08 0.02
Matches are distributed among these distances:
101 17 0.22
102 4 0.05
103 58 0.73
ACGTcount: A:0.05, C:0.43, G:0.42, T:0.11
Consensus pattern (101 bp):
GCGCCCTTCCCGCCCCCGGGGTGGGGGCGGCCGGGGCGCACACCACGCGGAGCGCCGGTGCGCGC
CTCGCCCACCCTCGGGTGCGGCCAGGAGCACGGTGC
Found at i:20695 original size:64 final size:64
Alignment explanation
Indices: 20616--20737 Score: 199
Period size: 64 Copynumber: 1.9 Consensus size: 64
20606 CGTTTGGTTG
*
20616 GGGGGGAGGGACGGATGCTGGGGAGGGACTCGTTGCGCACGCTTGGCCCTCCGCATGTTAGAGA
1 GGGGGGAGGGACGGATGCTGGGGAGGGACTCGTTGCCCACGCTTGGCCCTCCGCATGTTAGAGA
* * * *
20680 GGGGGGAGGGCCGGATGGTTGGGAGGGACTCGTTGCCCACGCTTGGGCCTCCGCATGT
1 GGGGGGAGGGACGGATGCTGGGGAGGGACTCGTTGCCCACGCTTGGCCCTCCGCATGT
20738 GCTATCGGTG
Statistics
Matches: 53, Mismatches: 5, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
64 53 1.00
ACGTcount: A:0.13, C:0.23, G:0.46, T:0.18
Consensus pattern (64 bp):
GGGGGGAGGGACGGATGCTGGGGAGGGACTCGTTGCCCACGCTTGGCCCTCCGCATGTTAGAGA
Found at i:21245 original size:102 final size:102
Alignment explanation
Indices: 21076--21262 Score: 315
Period size: 102 Copynumber: 1.8 Consensus size: 102
21066 GGCCAGGTGC
* *
21076 ACGGTGCGCGCCCTGCCCGCCCCCTGGTGTGGGGGCGGTCGGGGCGCACACCATGCGGAGCACCG
1 ACGGTGCGCGCCCTGCCCGCCCCCTGGGGTGGGGGCGGGCGGGGCGCACACCATGCGGAGCACCG
21141 GTGCGCGCCTCGCCCACCCTCGGCTGCGGGCGGGAGA
66 GTGCGCGCCTCGCCCACCCTCGGCTGCGGGCGGGAGA
*
21178 ACGGTGCGCGCCCAT-CCCGCCCCCTGGGGTCGGGGGCGGGCGGGGCGCACGCCATGCGGAGCA-
1 ACGGTGCGCGCCC-TGCCCGCCCCCTGGGGT-GGGGGCGGGCGGGGCGCACACCATGCGGAGCAC
21241 CGGTGCGCGCCTCGCCCACCCT
64 CGGTGCGCGCCTCGCCCACCCT
21263 GGGGGGTGCG
Statistics
Matches: 80, Mismatches: 3, Indels: 4
0.92 0.03 0.05
Matches are distributed among these distances:
102 49 0.61
103 31 0.39
ACGTcount: A:0.09, C:0.41, G:0.41, T:0.10
Consensus pattern (102 bp):
ACGGTGCGCGCCCTGCCCGCCCCCTGGGGTGGGGGCGGGCGGGGCGCACACCATGCGGAGCACCG
GTGCGCGCCTCGCCCACCCTCGGCTGCGGGCGGGAGA
Found at i:21333 original size:64 final size:62
Alignment explanation
Indices: 21173--21348 Score: 168
Period size: 64 Copynumber: 2.8 Consensus size: 62
21163 GCTGCGGGCG
* ** *
21173 GGAGAACGGTGCGCGCCCATCCCGCCCCCTGGGGT-CGGGGGCGG-GCGGGGCGCACGCCATGC
1 GGAGCACGGTGCGCGCCC-TCCCGCCCCCTGGGGTGC-GGGGCGGCGCGGCACGCACGCCAGGC
*
21235 GGAGCACGGTGCGCG-CCTCGCC-CACCCTGGGGGGTGCGGGGCGGCCGCGGCACGCAC-CC-GG
1 GGAGCACGGTGCGCGCCCTC-CCGCCCCCT--GGGGTGCGGGGCGG-CGCGGCACGCACGCCAGG
21296 CC
62 -C
21298 AGGAGCACGGTGCGCGCCCTTCCCGCCCCCTGGGGTG-GGGGCGGTCGCGGC
1 -GGAGCACGGTGCGCGCCC-TCCCGCCCCCTGGGGTGCGGGGCGG-CGCGGC
21349 GCACACCGTG
Statistics
Matches: 96, Mismatches: 7, Indels: 21
0.77 0.06 0.17
Matches are distributed among these distances:
60 7 0.07
61 4 0.04
62 27 0.28
63 17 0.18
64 30 0.31
65 4 0.04
66 7 0.07
ACGTcount: A:0.08, C:0.39, G:0.45, T:0.09
Consensus pattern (62 bp):
GGAGCACGGTGCGCGCCCTCCCGCCCCCTGGGGTGCGGGGCGGCGCGGCACGCACGCCAGGC
Found at i:21426 original size:819 final size:811
Alignment explanation
Indices: 19605--21512 Score: 2339
Period size: 819 Copynumber: 2.3 Consensus size: 811
19595 GCGCGCGCAA
* * *** * *
19605 CGCCCGCCCTCGGGTGCGGACGGCCGCGGCACCCGCA-AAAGCCACGAGCATGGTGCGCGCCCTT
1 CGCCCACCCTCGGGTGCGGGCGGCCGCGGCA--CGCACCCGGCCAGGAGCACGGTGCGCGCCCTT
* * * * ** *
19669 CCCGCCCCC-AGGGTGGGAGCGGTCGGGGCGCGCACCATGCGGCGCAATGGGTGCGCACCCTTGC
64 CCCGCCCCCTGGGGTGGGGGCGGTCGGGGCGCACACC-TG-GGGGCACCGGGTGCGCACCGTTGC
* * *
19733 CGGGGTACCCAACCGACCGATGCAACGGTAAGGGACGAACACGTTTGGAGAGGGGAGGGACAGAT
127 CGGGGTACCCAACCGACCGACGCAACGCTAAGGGACGAACACGTTTGGAGAGGGGAGGGACGGAT
* * *
19798 GCCGGGGAGGGACTCGTTGCACACGCTCGGCCCTACGCATGCTTGGAGGGGGGAGGGACGGATGC
192 GCCGGGGAGGGACTCGTTGCGCACGCTTGGCCCTCCGCATGCTTGGAGGGGGGAGGGACGGATGC
*
19863 TTGGGGAGGGACTCGTTGCACACGCGTGGGCCTCCGCATGTGCTATCGGTGCCGAATTCGGGGTC
257 TTGGGGAGGGACTCGTTGCACACGCGTGGGCCTCCGCATGTGCTATCGGTGCCGAATTCGCGGTC
*
19928 GTCGGCACCGTCGCCGGAGCACCGCCGGAGAACCTGACCGGCGGTGGGGGGGAGCCCCGGCGAAT
322 CTCGGCACCGT----------CCGCCGGAGAACCTGACCGGCGGTGGGGGGGAGCCCCGGCGAA-
* *
19993 GGGGGAGGGGTGTGGGCGACGGCACGCGATGGGTGCAGGGTGGCAGCCCCGCAGGGCACCCCACT
376 -GGGGAGCGGTGT----G--GGCACGCGACGGGTGCAGGGTGGCAGCCCCGCAGGGCACCCCACT
* * * **
20058 GCCCCCCCCCTTGGTTGCTCAAGTATCACACCCCCTATAGAGCTTAAGATGGATTTCTTTGTTGT
434 G-CCCCCCCCTAGGTTGCTCAAGTATCACACCCCCTATAGAGCTTAAGAGGGATTTCTATGCCGT
* * * *
20123 CACCAGTGGAGGTGCCCACGTTCGAAACAGGGACAGTTTTTCTCCCGCACCGAGGGTGGGCCGAG
498 CACCAGCGGAAGTGACCACGTTCGAAACAGGGACAGTTTTTCTCCCGCACCGAGGGTGGGCCAAG
* * * *
20188 ACCCCACCACCTCGGGCACCCGGTGCGCGCCACGCCCACCCTCGGGTGCGCGGGGCCGAGGCTCG
563 ACCCCACCACCTCGGGCACCCGGCGCGCGCCACGCCCACCCTCGGGCGCGCGGGGCCGAGGCACA
* *
20253 CACCCGGCCCGGGGGCGCCCTTCCCGCCCCCGTGGTGGGGGCGGCCGGGGCGCACACCACGCGGA
628 CACCCGGCCCGGGCGCGCCCTGCCCGCCCCCGTGGTGGGGGCGGCCGGGGCGCACACCACGCGGA
* * * *
20318 GCGCCGGTGCGCGCCTCGCCCACCCTCGGGTGCGGCCAGGAGCACGGTGCGCGCCCTTCCCGCCC
693 GCACCGGTGCGCGCCTCGCCCACCCTCGGCTGCGGCCAGGAGAACGGTGCGCGCCCATCCCGCCC
* * * * *
20383 CCTGGGGTGGGGGGCGGTCGGGGCGCCCACCTCGCGGGGCGCCGGTGCGCGCCT
758 CCTGGGGTCGGGGGCGGGCGGGGCGCACACCTCGCGGAGCGACGGTGCGCGCCT
* * * * * *
20437 CGCCCGCCCTCTGGTGCGGGCGGCCGCGGCACGGACCCGGGCGGGAGCACGGGGCGCGCCCTTCC
1 CGCCCACCCTCGGGTGCGGGCGGCCGCGGCACGCACCCGGCCAGGAGCACGGTGCGCGCCCTTCC
*
20502 CGCCCCCTGGGGTGGGGGCGGTCGGGGCGCACACCTCGCGGGGCACCGGGTGCGCACCGTTGTCG
66 CGCCCCCTGGGGTGGGGGCGGTCGGGGCGCACACCT-G-GGGGCACCGGGTGCGCACCGTTGCCG
* *
20567 GGGTACCCAACCGACCGACGCAACGCTAAGGGACGAACACGTTTGGTTGGGGGGGAGGGACGGAT
129 GGGTACCCAACCGACCGACGCAACGCTAAGGGACGAACACGTTTGG--AGAGGGGAGGGACGGAT
* *
20632 GCTGGGGAGGGACTCGTTGCGCACGCTTGGCCCTCCGCATG-TTAGAGAGGGGGGAGGGCCGGAT
192 GCCGGGGAGGGACTCGTTGCGCACGCTTGGCCCTCCGCATGCTT-G-GAGGGGGGAGGGACGGAT
* * *
20696 GGTT-GGGAGGGACTCGTTGCCCACGCTTGGGCCTCCGCATGTGCTATCGGTGCCGAATTCGCGG
255 GCTTGGGGAGGGACTCGTTGCACACGCGTGGGCCTCCGCATGTGCTATCGGTGCCGAATTCGCGG
*
20760 TCCTCGGCACCGT-CGCCGGAGAACCTGACCGGCGGT-GGGGGGAGCCCCGGCG-A-GTG-GCGG
320 TCCTCGGCACCGTCCGCCGGAGAACCTGACCGGCGGTGGGGGGGAGCCCCGGCGAAGGGGAGCGG
* * *
20820 -GT-GGCACGCGACGGGTGCTGGGTGGCAGCCCCGCGGGGCACCCCCAGTG-CCCCCCCTAGGTT
385 TGTGGGCACGCGACGGGTGCAGGGTGGCAGCCCCGCAGGGCA-CCCCACTGCCCCCCCCTAGGTT
*
20882 GCTCAAGTATCACACCCCCTATAGAGCTTAAG-GGGCATTTCATAT-CCGTTACCAGCGGACAG-
449 GCTCAAGTATCACACCCCCTATAGAGCTTAAGAGGG-ATTTC-TATGCCGTCACCAGCGGA-AGT
* * * *
20944 GACCACGTTCGAAACAGGGTCGGTTTTTCTGCCGCACCTAGGGT-GGCGCAAG-CCCGCACCACC
511 GACCACGTTCGAAACAGGGACAGTTTTTCTCCCGCACCGAGGGTGGGC-CAAGACCC-CACCACC
* * *
21007 TCGGGCAGCCGGCGCGCGCCTCGCCCACCCTCGGGCGCG-GGCGGCCGAGGCACACCCCCGGCCA
574 TCGGGCACCCGGCGCGCGCCACGCCCACCCTCGGGCGCGCGG-GGCCGAGGCACACACCCGG-C-
* *
21071 GGTGCACGGTGCGCGCCCTGCCCGCCCCC-TGGTGTGGGGGCGGTCGGGGCGCACACCATGCGGA
636 ----C-CGG-GCGCGCCCTGCCCGCCCCCGT-G-GTGGGGGCGGCCGGGGCGCACACCACGCGGA
* *
21135 GCACCGGTGCGCGCCTCGCCCACCCTCGGCTGCGGGCGGGAGAACGGTGCGCGCCCATCCCGCCC
693 GCACCGGTGCGCGCCTCGCCCACCCTCGGCTGCGGCCAGGAGAACGGTGCGCGCCCATCCCGCCC
*
21200 CCTGGGGTCGGGGGCGGGCGGGGCGCACGCCAT-GCGGAGC-ACGGTGCGCGCCT
758 CCTGGGGTCGGGGGCGGGCGGGGCGCACACC-TCGCGGAGCGACGGTGCGCGCCT
*
21253 CGCCCACCCTGGGGGGTGCGGGGCGGCCGCGGCACGCACCCGGCCAGGAGCACGGTGCGCGCCCT
1 CGCCCACCCT--CGGGTGC-GGGCGGCCGCGGCACGCACCCGGCCAGGAGCACGGTGCGCGCCCT
* *
21318 TCCCGCCCCCTGGGGTGGGGGCGGTCGCGGCGCACACCGTGGGGAGCACCGGGTGCGCACAGTTG
63 TCCCGCCCCCTGGGGTGGGGGCGGTCGGGGCGCACACC-TGGGG-GCACCGGGTGCGCACCGTTG
* * * *
21383 CCGGGGTACCCAACCGACCGGCGCAACGCTAAGGGAAGAACACGTTCGGAGCGGGGAGGGACGGA
126 CCGGGGTACCCAACCGACCGACGCAACGCTAAGGGACGAACACGTTTGGAGAGGGGAGGGACGGA
* ** * * *
21448 TGGCCGGGGGAGGGACTCGTTGCGCATGCGTTGG-CCTCCGCCCGTTTGGTGTGGGGAGGGACGG
191 T-GCC-GGGGAGGGACTCGTTGCGCACGC-TTGGCCCTCCGCATGCTTGGAGGGGGGAGGGACGG
21512 A
253 A
21513 CGGCCTATGT
Statistics
Matches: 943, Mismatches: 99, Indels: 82
0.84 0.09 0.07
Matches are distributed among these distances:
807 10 0.01
808 159 0.17
809 39 0.04
810 7 0.01
814 1 0.00
815 4 0.00
816 41 0.04
817 139 0.15
818 27 0.03
819 174 0.18
820 7 0.01
821 1 0.00
822 16 0.02
823 23 0.02
830 3 0.00
831 29 0.03
832 120 0.13
833 2 0.00
834 121 0.13
835 20 0.02
ACGTcount: A:0.13, C:0.34, G:0.40, T:0.13
Consensus pattern (811 bp):
CGCCCACCCTCGGGTGCGGGCGGCCGCGGCACGCACCCGGCCAGGAGCACGGTGCGCGCCCTTCC
CGCCCCCTGGGGTGGGGGCGGTCGGGGCGCACACCTGGGGGCACCGGGTGCGCACCGTTGCCGGG
GTACCCAACCGACCGACGCAACGCTAAGGGACGAACACGTTTGGAGAGGGGAGGGACGGATGCCG
GGGAGGGACTCGTTGCGCACGCTTGGCCCTCCGCATGCTTGGAGGGGGGAGGGACGGATGCTTGG
GGAGGGACTCGTTGCACACGCGTGGGCCTCCGCATGTGCTATCGGTGCCGAATTCGCGGTCCTCG
GCACCGTCCGCCGGAGAACCTGACCGGCGGTGGGGGGGAGCCCCGGCGAAGGGGAGCGGTGTGGG
CACGCGACGGGTGCAGGGTGGCAGCCCCGCAGGGCACCCCACTGCCCCCCCCTAGGTTGCTCAAG
TATCACACCCCCTATAGAGCTTAAGAGGGATTTCTATGCCGTCACCAGCGGAAGTGACCACGTTC
GAAACAGGGACAGTTTTTCTCCCGCACCGAGGGTGGGCCAAGACCCCACCACCTCGGGCACCCGG
CGCGCGCCACGCCCACCCTCGGGCGCGCGGGGCCGAGGCACACACCCGGCCCGGGCGCGCCCTGC
CCGCCCCCGTGGTGGGGGCGGCCGGGGCGCACACCACGCGGAGCACCGGTGCGCGCCTCGCCCAC
CCTCGGCTGCGGCCAGGAGAACGGTGCGCGCCCATCCCGCCCCCTGGGGTCGGGGGCGGGCGGGG
CGCACACCTCGCGGAGCGACGGTGCGCGCCT
Found at i:27540 original size:418 final size:404
Alignment explanation
Indices: 26744--27544 Score: 1081
Period size: 418 Copynumber: 1.9 Consensus size: 404
26734 CACTCAGCCC
* *
26744 GGGCGCGATCCATGCCAGGCGCATGGAGCGCAATCCCCGACGGCCAACCGGCAGGACGAACCCAG
1 GGGCGCGAACCATGCCAGGCGCATGGAGCGCAATCCCCGACGGCCAACCGGCAGGACGAACCCAC
*
26809 CGTTGCCGATGCAAGGGCCGCGAGACTGCCCCTGCTCGAGGGGCAACGGCCAGGCCAAGCCCGCA
66 CGTTGCCGATGCAAGGGCCACGAGACTGCCCCTGCTCGAGGGGCAACGGCCAGGCCAAGCCCGCA
26874 CCTGCAGCATCTGCCTGCACCACAACCGGGACCATCCACTCGAATTCGAGAACTTGGCAGCATCA
131 CCTGCAGCATCTGCCTGCACCACAACCGGGACCATCCACTCGAATTCGAGAACTTGGCAGCATCA
* * *
26939 CCGCAGGAGCAAGCCTAACCTTCCGGCACGACCACGCCCCGTTACCCACACACGCGTGCCAAGCG
196 CCGCAGGAGCAAGCCTAACCTTCCGGCACGACCACGCCCCATTACCCACACACGCGGGCCAACCG
* * * * *
27004 ATCGCGCACGTAGCGACCGGGGGCCTCACCACGGATCACTTGGACCGCGTAGGGCCTTCATCACC
261 ATCGAGCACATAGCGACCGGGGACCTCACCACGGATCACTTGGACCGCGAAGGGCCTCCATCACC
*
27069 GCAGCTGGGCATCCGGTCACCGAAAACCACGATCGCAAGGCTCGCGCGACCTGGATTTTAATCGA
326 GCAGCTGGGCATCCGGTCACCGAAAACCACGATCGCAAGGCTCGCACGACCTGGATTTTAATCGA
27134 GAGGGACACTGCCG
391 GAGGGACACTGCCG
**
27148 GGGCGCGAACCATGCCAGGCGCATGGAGCGCAATCCCCGACAGG-CAACCGGCAGGACGTGCCCA
1 GGGCGCGAACCATGCCAGGCGCATGGAGCGCAATCCCCGAC-GGCCAACCGGCAGGACGAACCCA
* * *
27212 CCGTTGCCGATGCAAGGGCCACGAGACTGCCCTTGCTCGAGGGGC-ATGGCCAGGCCAAGCCCTC
65 CCGTTGCCGATGCAAGGGCCACGAGACTGCCCCTGCTCGAGGGGCAACGGCCAGGCCAAGCCCGC
* * * *
27276 ACCTGCAGCTTCTGCGC-GCGCCACAACCGGGACCCTCTACTCGATTAGGGGGCTTGGTCCTG-G
130 ACCTGCAGCATCTGC-CTGCACCACAACCGGGACCATCCACTCGA--A-------T--T-C-GAG
* * ** * * * * * *
27339 AGTCGTTGGCGGCATCGGCGCAGGTGCGAGCTTAACCTTCCGGCAGGACCACGCCTCATCTCCCC
181 A-AC-TTGGCAGCATCACCGCAGGAGCAAGCCTAACCTTCCGGCACGACCACGCCCCAT-TACCC
* * *
27404 ACACACGCGGGCCAACCGATCGAGCACATGGTGACCGGGGACCTCGCCACGGATCACTTGGACCG
243 ACACACGCGGGCCAACCGATCGAGCACATAGCGACCGGGGACCTCACCACGGATCACTTGGACCG
27469 CGAAGGGCCTCCATCACCGCAGCTGGGCATCCGGTCACCGAAAACCACGATCGCAAGGCAT-GCA
308 CGAAGGGCCTCCATCACCGCAGCTGGGCATCCGGTCACCGAAAACCACGATCGCAAGGC-TCGCA
*
27533 TGACCTGGATTT
372 CGACCTGGATTT
27545 CACACGAGGC
Statistics
Matches: 343, Mismatches: 35, Indels: 24
0.85 0.09 0.06
Matches are distributed among these distances:
403 55 0.16
404 101 0.29
405 3 0.01
412 1 0.00
414 1 0.00
415 3 0.01
416 2 0.01
417 45 0.13
418 131 0.38
419 1 0.00
ACGTcount: A:0.21, C:0.36, G:0.30, T:0.13
Consensus pattern (404 bp):
GGGCGCGAACCATGCCAGGCGCATGGAGCGCAATCCCCGACGGCCAACCGGCAGGACGAACCCAC
CGTTGCCGATGCAAGGGCCACGAGACTGCCCCTGCTCGAGGGGCAACGGCCAGGCCAAGCCCGCA
CCTGCAGCATCTGCCTGCACCACAACCGGGACCATCCACTCGAATTCGAGAACTTGGCAGCATCA
CCGCAGGAGCAAGCCTAACCTTCCGGCACGACCACGCCCCATTACCCACACACGCGGGCCAACCG
ATCGAGCACATAGCGACCGGGGACCTCACCACGGATCACTTGGACCGCGAAGGGCCTCCATCACC
GCAGCTGGGCATCCGGTCACCGAAAACCACGATCGCAAGGCTCGCACGACCTGGATTTTAATCGA
GAGGGACACTGCCG
Found at i:28915 original size:358 final size:358
Alignment explanation
Indices: 28258--28974 Score: 1434
Period size: 358 Copynumber: 2.0 Consensus size: 358
28248 GCGTGCCAAA
28258 CGATCGCGCACGTAGCGACCGGGGGCCTCACCACGGATCACTTGGACCGCGTAGGGTCTCCATCA
1 CGATCGCGCACGTAGCGACCGGGGGCCTCACCACGGATCACTTGGACCGCGTAGGGTCTCCATCA
28323 CCGCAGCTGGGCATCCGGTCACCGAAAACCACGATCGCAAGGCTCGCGCGACCTGGATTTTAATC
66 CCGCAGCTGGGCATCCGGTCACCGAAAACCACGATCGCAAGGCTCGCGCGACCTGGATTTTAATC
28388 GAGAGGGACACTGCCGGGGCGCGAACCATGCCAGGCGCATGGAGCGCAATCCCCGACAGGCAACC
131 GAGAGGGACACTGCCGGGGCGCGAACCATGCCAGGCGCATGGAGCGCAATCCCCGACAGGCAACC
28453 GGCAGGACGTGCCCACCGTTGCCGATGCAAGGGCCACGAGACTGCCCCTGCCCGAGGGGCATGGC
196 GGCAGGACGTGCCCACCGTTGCCGATGCAAGGGCCACGAGACTGCCCCTGCCCGAGGGGCATGGC
28518 CAGGCCAAGCCCTCACCTGCAGCTTCTGCCCACGCCACAACCGGGACAACCTACTCGAATTCGGG
261 CAGGCCAAGCCCTCACCTGCAGCTTCTGCCCACGCCACAACCGGGACAACCTACTCGAATTCGGG
28583 AACTTGGCAGAATCACCGCAGGTGCGAGCCTTG
326 AACTTGGCAGAATCACCGCAGGTGCGAGCCTTG
28616 CGATCGCGCACGTAGCGACCGGGGGCCTCACCACGGATCACTTGGACCGCGTAGGGTCTCCATCA
1 CGATCGCGCACGTAGCGACCGGGGGCCTCACCACGGATCACTTGGACCGCGTAGGGTCTCCATCA
28681 CCGCAGCTGGGCATCCGGTCACCGAAAACCACGATCGCAAGGCTCGCGCGACCTGGATTTTAATC
66 CCGCAGCTGGGCATCCGGTCACCGAAAACCACGATCGCAAGGCTCGCGCGACCTGGATTTTAATC
28746 GAGAGGGACACTGCCGGGGCGCGAACCATGCCAGGCGCATGGAGCGCAATCCCCGACAGGCAACC
131 GAGAGGGACACTGCCGGGGCGCGAACCATGCCAGGCGCATGGAGCGCAATCCCCGACAGGCAACC
28811 GGCAGGACGTGCCCACCGTTGCCGATGCAAGGGCCACGAGACTGCCCCTGCCCGAGGGGCATGGC
196 GGCAGGACGTGCCCACCGTTGCCGATGCAAGGGCCACGAGACTGCCCCTGCCCGAGGGGCATGGC
28876 CAGGCCAAGCCCTCACCTGCAGCTTCTGCCCACGCCACAACCGGGACAACCTACTCGAATTCGGG
261 CAGGCCAAGCCCTCACCTGCAGCTTCTGCCCACGCCACAACCGGGACAACCTACTCGAATTCGGG
28941 AACTTGGCAGAATCACCGCAGGTGCGAGCCTTG
326 AACTTGGCAGAATCACCGCAGGTGCGAGCCTTG
28974 C
1 C
28975 CTTCCGGCAG
Statistics
Matches: 359, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
358 359 1.00
ACGTcount: A:0.21, C:0.35, G:0.30, T:0.13
Consensus pattern (358 bp):
CGATCGCGCACGTAGCGACCGGGGGCCTCACCACGGATCACTTGGACCGCGTAGGGTCTCCATCA
CCGCAGCTGGGCATCCGGTCACCGAAAACCACGATCGCAAGGCTCGCGCGACCTGGATTTTAATC
GAGAGGGACACTGCCGGGGCGCGAACCATGCCAGGCGCATGGAGCGCAATCCCCGACAGGCAACC
GGCAGGACGTGCCCACCGTTGCCGATGCAAGGGCCACGAGACTGCCCCTGCCCGAGGGGCATGGC
CAGGCCAAGCCCTCACCTGCAGCTTCTGCCCACGCCACAACCGGGACAACCTACTCGAATTCGGG
AACTTGGCAGAATCACCGCAGGTGCGAGCCTTG
Found at i:29749 original size:403 final size:403
Alignment explanation
Indices: 28616--29896 Score: 2054
Period size: 402 Copynumber: 3.2 Consensus size: 403
28606 GCGAGCCTTG
28616 CGATCGCGCACGTAGCGACCGGGGGCCTCACCACGGATCACTTGGACCGCGTAGGGTCTCCATCA
1 CGATCGCGCACGTAGCGACCGGGGGCCTCACCACGGATCACTTGGACCGCGTAGGGTCTCCATCA
28681 CCGCAGCTGGGCATCCGGTCACCGAAAACCACGATCGCAAGGCTCGCGCGACCTGGATTTTAATC
66 CCGCAGCTGGGCATCCGGTCACCGAAAACCACGATCGCAAGGCTCGCGCGACCTGGATTTTAATC
28746 GAGAGGGACACTGCCGGGGCGCGAACCATGCCAGGCGCATGGAGCGCAATCCCCGACAGGCAACC
131 GAGAGGGACACTGCCGGGGCGCGAACCATGCCAGGCGCATGGAGCGCAATCCCCGACAGGCAACC
*
28811 GGCAGGACGTGCCCACCGTTGCCGATGCAAGGGCCACGAGACTGCCCCTGCCCGAGGGGCATGGC
196 GGCAGGACGTGCCCACCGTTGCCGATGCAAGGGCCACGAGACTGCCCCTGCTCGAGGGGCATGGC
* *
28876 CAGGCCAAGCCCTCACCTGCAGCTTCTGCCCACGCCACAACCGGGACAACCTACTCGAATTCGGG
261 CAGGCCAAGCCCTCACCTGCAGCTTCTGCCCACGCCACAACCGGGACTACCAACTCGAATTCGGG
28941 AACTTGGCAGAATCACCGCAGGTGCGAGCCTTGCCTTCCGGCA-GACCACGCCCCGTTACCCGCA
326 AACTTGGCAGAATCACCGCAGGTGCGAGCCTTGCCTTCCGGCACGACCACGCCCCGTTACCCGCA
29005 CACGCGTGCCAAA
391 CACGCGTGCCAAA
29018 CGATCGCGCACGTAGCGACCGGGGGCCTCACCACGGATCACTTGGACCGCGTAGGGTCTCCATCA
1 CGATCGCGCACGTAGCGACCGGGGGCCTCACCACGGATCACTTGGACCGCGTAGGGTCTCCATCA
29083 CCGCAGCTGGGCATCCGGTCACCGAAAACCACGATCGCAAGGCTCGCGCGACCTGGATTTTAATC
66 CCGCAGCTGGGCATCCGGTCACCGAAAACCACGATCGCAAGGCTCGCGCGACCTGGATTTTAATC
29148 GAGAGGGACACTGCCGGGGCGCGAACCATGCCAGGCGCATGGAGCGCAATCCCCGACAGGCAACC
131 GAGAGGGACACTGCCGGGGCGCGAACCATGCCAGGCGCATGGAGCGCAATCCCCGACAGGCAACC
29213 GGCAGGACGTGCCCACCGTTGCCGATGCAAGGGCCACGAGACTGCCCCTGCTCGAGGGGCATGGC
196 GGCAGGACGTGCCCACCGTTGCCGATGCAAGGGCCACGAGACTGCCCCTGCTCGAGGGGCATGGC
* *
29278 CAGGCCAAGCCCTCACCTGCAGCCTCTGCCCACGCCACAACCGGGACTACCGACTCGAATTCGGG
261 CAGGCCAAGCCCTCACCTGCAGCTTCTGCCCACGCCACAACCGGGACTACCAACTCGAATTCGGG
*
29343 AACTTGGCAGCATCACCGCAGGTGCGAGCCTTGCCTTCCGGCACGACCACGCCCCGTTACCCGCA
326 AACTTGGCAGAATCACCGCAGGTGCGAGCCTTGCCTTCCGGCACGACCACGCCCCGTTACCCGCA
*
29408 CACGCGTGCCAAC
391 CACGCGTGCCAAA
* * ** * *
29421 CGATCGCGCACGCAGAGACCGACGGCCTCACCACGGATCACTTGGACCGCGAAGGGTC-CCGTCA
1 CGATCGCGCACGTAGCGACCGGGGGCCTCACCACGGATCACTTGGACCGCGTAGGGTCTCCATCA
* * * *
29485 CCGCAGCTGGGCATCCGGCCACCGAAAACCACGATCGCAAGGCACGCGCGACCTGGATCTTAACC
66 CCGCAGCTGGGCATCCGGTCACCGAAAACCACGATCGCAAGGCTCGCGCGACCTGGATTTTAATC
* * * * *
29550 GAGAGGGACACTCTGCCGGGGCGCGATCAATGCCAGGCGCATCGAGCACAATCCCCGACAGACAA
131 GAGAGGGACA--CTGCCGGGGCGCGAACCATGCCAGGCGCATGGAGCGCAATCCCCGACAGGCAA
* * * *
29615 CCGGCGGGACGAGCCCACCGTTGCCGAAGCAAGGGCCGCGAGACTGCCCCTGCTC-ACGGGGCAT
194 CCGGCAGGACGTGCCCACCGTTGCCGATGCAAGGGCCACGAGACTGCCCCTGCTCGA-GGGGCAT
29679 GGCCAGGCCAAGCCC-CACCTGCAGCTTCTGCCCACGCCACAACCGGGACTACCAACTCGAATTC
258 GGCCAGGCCAAGCCCTCACCTGCAGCTTCTGCCCACGCCACAACCGGGACTACCAACTCGAATTC
* * * * *
29743 GGGAACTTGGCAGAATCAGCGCAGGTG-GAAG-CTTAACCCTACGGCACGACCACGCCCCTTGTG
323 GGGAACTTGGCAGAATCACCGCAGGTGCG-AGCCTT-GCCTTCCGGCACGACCACGCCCC--GTT
* * **
29806 CCCCACACACGCGTGCCATG
384 ACCCGCACACGCGTGCCAAA
* * ** * *
29826 CGATCG-GCAGCATACGGCGACCGGGGACCTTGCCACGGATCACCTGGACCGCGCAGGGTCTCCA
1 CGATCGCGCA-CGTA--GCGACCGGGGGCCTCACCACGGATCACTTGGACCGCGTAGGGTCTCCA
29890 TCACCGC
63 TCACCGC
29897 GACAAGGTTT
Statistics
Matches: 819, Mismatches: 48, Indels: 18
0.93 0.05 0.02
Matches are distributed among these distances:
402 443 0.54
403 181 0.22
404 124 0.15
405 26 0.03
407 36 0.04
408 9 0.01
ACGTcount: A:0.21, C:0.37, G:0.29, T:0.12
Consensus pattern (403 bp):
CGATCGCGCACGTAGCGACCGGGGGCCTCACCACGGATCACTTGGACCGCGTAGGGTCTCCATCA
CCGCAGCTGGGCATCCGGTCACCGAAAACCACGATCGCAAGGCTCGCGCGACCTGGATTTTAATC
GAGAGGGACACTGCCGGGGCGCGAACCATGCCAGGCGCATGGAGCGCAATCCCCGACAGGCAACC
GGCAGGACGTGCCCACCGTTGCCGATGCAAGGGCCACGAGACTGCCCCTGCTCGAGGGGCATGGC
CAGGCCAAGCCCTCACCTGCAGCTTCTGCCCACGCCACAACCGGGACTACCAACTCGAATTCGGG
AACTTGGCAGAATCACCGCAGGTGCGAGCCTTGCCTTCCGGCACGACCACGCCCCGTTACCCGCA
CACGCGTGCCAAA
Found at i:31058 original size:103 final size:101
Alignment explanation
Indices: 30906--31094 Score: 297
Period size: 103 Copynumber: 1.9 Consensus size: 101
30896 CGGCCCGGGG
*
30906 GCGCCCTTCCCGCCCCCGTGGTGGGGGCGGCCGGGGCGCACACCACGCGGAGCGCCGGTGCGCGC
1 GCGCCCTTCCCGCCCCCGGGGTGGGGGCGGCCGGGGCGCACACCACGCGGAGCGCCGGTGCGCGC
30971 CTCGCCCACCCTCGGGTGCGGCCAGGAGCACGGTGC
66 CTCGCCCACCCTCGGGTGCGGCCAGGAGCACGGTGC
* * * *
31007 GCGCCCTTCCCGCCCCCTGGGGTGGGGGGCGGTCGGGGCGCCCACCTCGCGGGGCGCCGGTGCGC
1 GCGCCCTTCCCGCCCCC-GGGGT-GGGGGCGGCCGGGGCGCACACCACGCGGAGCGCCGGTGCGC
* *
31072 GCCTCGCCCGCCCTCTGGTGCGG
64 GCCTCGCCCACCCTCGGGTGCGG
31095 GCGGCCGCGG
Statistics
Matches: 79, Mismatches: 7, Indels: 2
0.90 0.08 0.02
Matches are distributed among these distances:
101 17 0.22
102 4 0.05
103 58 0.73
ACGTcount: A:0.05, C:0.43, G:0.42, T:0.11
Consensus pattern (101 bp):
GCGCCCTTCCCGCCCCCGGGGTGGGGGCGGCCGGGGCGCACACCACGCGGAGCGCCGGTGCGCGC
CTCGCCCACCCTCGGGTGCGGCCAGGAGCACGGTGC
Found at i:31334 original size:64 final size:64
Alignment explanation
Indices: 31255--31376 Score: 199
Period size: 64 Copynumber: 1.9 Consensus size: 64
31245 CGTTTGGTTG
*
31255 GGGGGGAGGGACGGATGCTGGGGAGGGACTCGTTGCGCACGCTTGGCCCTCCGCATGTTAGAGA
1 GGGGGGAGGGACGGATGCTGGGGAGGGACTCGTTGCCCACGCTTGGCCCTCCGCATGTTAGAGA
* * * *
31319 GGGGGGAGGGCCGGATGGTTGGGAGGGACTCGTTGCCCACGCTTGGGCCTCCGCATGT
1 GGGGGGAGGGACGGATGCTGGGGAGGGACTCGTTGCCCACGCTTGGCCCTCCGCATGT
31377 GCTATCGGTG
Statistics
Matches: 53, Mismatches: 5, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
64 53 1.00
ACGTcount: A:0.13, C:0.23, G:0.46, T:0.18
Consensus pattern (64 bp):
GGGGGGAGGGACGGATGCTGGGGAGGGACTCGTTGCCCACGCTTGGCCCTCCGCATGTTAGAGA
Found at i:32089 original size:64 final size:64
Alignment explanation
Indices: 32010--32131 Score: 199
Period size: 64 Copynumber: 1.9 Consensus size: 64
32000 CGTTTGGTTG
*
32010 GGGGGGAGGGACGGATGCTGGGGAGGGACTCGTTGCGCACGCTTGGCCCTCCGCATGTTAGAGA
1 GGGGGGAGGGACGGATGCTGGGGAGGGACTCGTTGCCCACGCTTGGCCCTCCGCATGTTAGAGA
* * * *
32074 GGGGGGAGGGCCGGATGGTTGGGAGGGACTCGTTGCCCACGCTTGGGCCTCCGCATGT
1 GGGGGGAGGGACGGATGCTGGGGAGGGACTCGTTGCCCACGCTTGGCCCTCCGCATGT
32132 GCTATCGGTG
Statistics
Matches: 53, Mismatches: 5, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
64 53 1.00
ACGTcount: A:0.13, C:0.23, G:0.46, T:0.18
Consensus pattern (64 bp):
GGGGGGAGGGACGGATGCTGGGGAGGGACTCGTTGCCCACGCTTGGCCCTCCGCATGTTAGAGA
Found at i:32843 original size:64 final size:64
Alignment explanation
Indices: 32764--32885 Score: 199
Period size: 64 Copynumber: 1.9 Consensus size: 64
32754 CGTTTGGTTG
*
32764 GGGGGGAGGGACGGATGCTGGGGAGGGACTCGTTGCGCACGCTTGGCCCTCCGCATGTTAGAGA
1 GGGGGGAGGGACGGATGCTGGGGAGGGACTCGTTGCCCACGCTTGGCCCTCCGCATGTTAGAGA
* * * *
32828 GGGGGGAGGGCCGGATGGTTGGGAGGGACTCGTTGCCCACGCTTGGGCCTCCGCATGT
1 GGGGGGAGGGACGGATGCTGGGGAGGGACTCGTTGCCCACGCTTGGCCCTCCGCATGT
32886 GCTATCGGTG
Statistics
Matches: 53, Mismatches: 5, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
64 53 1.00
ACGTcount: A:0.13, C:0.23, G:0.46, T:0.18
Consensus pattern (64 bp):
GGGGGGAGGGACGGATGCTGGGGAGGGACTCGTTGCCCACGCTTGGCCCTCCGCATGTTAGAGA
Found at i:32930 original size:754 final size:756
Alignment explanation
Indices: 31064--33333 Score: 4263
Period size: 753 Copynumber: 3.0 Consensus size: 756
31054 CGCGGGGCGC
* ** * * *
31064 CGGTGCGCGCCTCGCCCGCCCT--CTGGTGC-GGGCGGCCGCGGCACGGACCCGGGCGGGAGCAC
1 CGGTGCGCGCCTCGCCCACCCTGGGGGGTGCGGGGCGGCCGCGGCACGCACCCGGCCAGGAGCAC
*
31126 GGGGCGCGCCCTTCCCGCCCCCTGGGGTGGGGGCGGTCGGGGCGCACACCTCGCGGGGCACCGGG
66 GGTGCGCGCCCTTCCCGCCCCCTGGGGTGGGGGCGGTCGGGGCGCACACCTCGCGGGGCACCGGG
31191 TGCGCACCGTTGTCGGGGTACCCAACCGACCGACGCAACGCTAAGGGACGAACACGTTTGGTTGG
131 TGCGCACCGTTGTCGGGGTACCCAACCGACCGACGCAACGCTAAGGGACGAACACGTTTGGTTGG
31256 GGGGGAGGGACGGATGCTGGGGAGGGACTCGTTGCGCACGCTTGGCCCTCCGCATGTTAGAGAGG
196 GGGGGAGGGACGGATGCTGGGGAGGGACTCGTTGCGCACGCTTGGCCCTCCGCATGTTAGAGAGG
31321 GGGGAGGGCCGGATGGTTGGGAGGGACTCGTTGCCCACGCTTGGGCCTCCGCATGTGCTATCGGT
261 GGGGAGGGCCGGATGGTTGGGAGGGACTCGTTGCCCACGCTTGGGCCTCCGCATGTGCTATCGGT
31386 GCCGAATTCGCGGTCCTCGGCACCGTCGCCGGAGAACCTGACCGGCGGTGGGGGGAGCCCCGGCG
326 GCCGAATTCGCGGTCCTCGGCACCGTCGCCGGAGAACCTGACCGGCGGTGGGGGGAGCCCCGGCG
31451 AGTGGCGGGTGGCACGCGACGGGTGCTGGGTGGCAGCCCCGCGGGGCACCCCCAGTGCCCCCCCT
391 AGTGGCGGGTGGCACGCGACGGGTGCTGGGTGGCAGCCCCGCGGGGCACCCCCAGTGCCCCCCCT
31516 AGGTTGCTCAAGTATCACACCCCCTATAGAGCTTAAGGGGCATTTCATATCCGTTACCAGCGGAC
456 AGGTTGCTCAAGTAT-ACACCCCCTATAGAGCTTAAGGGGCATTTCATATCCGTTACCAGCGGAC
31581 AGGACCACGTTCGAAACAGGGTCGGTTTTTCTGCCGCACCTAGGGTGGCGCAAGCCCGCACCACC
520 AGGACCACGTTCGAAACAGGGTCGGTTTTTCTGCCGCACCTAGGGTGGCGCAAGCCCGCACCACC
31646 TCGGGCAGCCGGCGCGCGCCTCGCCCACCCTCGGGCGCGGGCGGCCGAGGCACACCCCCGGCCAG
585 TCGGGCAGCCGGCGCGCGCCTCGCCCACCCTCGGGCGCGGGCGGCCGAGGCACACCCCCGGCCAG
31711 GTGCACGGTGCGCGCCCTGCCCGCCCCCTGGTGTGGGGGCGGTCGGGGCGCACACCATGCGGAGC
650 GTGCACGGTGCGCGCCCTGCCCGCCCCCTGGTGTGGGGGCGGTCGGGGCGCACACCATGCGGAGC
31776 ACCGGTGCGCGCCTCGCCCACCCTCGGCTGCGGGCGGGAGAA
715 ACCGGTGCGCGCCTCGCCCACCCTCGGCTGCGGGCGGGAGAA
* *
31818 CGGTGCGCGCCATCCCCCACCCTAGGGGGGTGCGGCGCGGCCGCGGCACGCACCCGGCCAGGAGC
1 CGGTGCGCGCC-TCGCCCACCCT-GGGGGGTGCGGGGCGGCCGCGGCACGCACCCGGCCAGGAGC
31883 ACGGTGCGCGCCCTTCCCGCCCCCT-GGG-GGGGGCGGTC-GGGCGCACACCTCGCGGGGCACC-
64 ACGGTGCGCGCCCTTCCCGCCCCCTGGGGTGGGGGCGGTCGGGGCGCACACCTCGCGGGGCACCG
*
31944 GGTGCGCACCGTTGTCGGGGTACCCAACCGACCGACGCAACGCTGAGGGACGAACACGTTTGGTT
129 GGTGCGCACCGTTGTCGGGGTACCCAACCGACCGACGCAACGCTAAGGGACGAACACGTTTGGTT
32009 GGGGGGGAGGGACGGATGCTGGGGAGGGACTCGTTGCGCACGCTTGGCCCTCCGCATGTTAGAGA
194 GGGGGGGAGGGACGGATGCTGGGGAGGGACTCGTTGCGCACGCTTGGCCCTCCGCATGTTAGAGA
32074 GGGGGGAGGGCCGGATGGTTGGGAGGGACTCGTTGCCCACGCTTGGGCCTCCGCATGTGCTATCG
259 GGGGGGAGGGCCGGATGGTTGGGAGGGACTCGTTGCCCACGCTTGGGCCTCCGCATGTGCTATCG
*
32139 GTGCCGAATTCGCGGTCCTCGGCACCGTCGCCGGAGAACCTGACCGGCGGTGGGGGGGAGTCCCG
324 GTGCCGAATTCGCGGTCCTCGGCACCGTCGCCGGAGAACCTGACCGGCGGT-GGGGGGAGCCCCG
*
32204 GCGAGTGGTGGGTGGCACGCGACGGGTGCTGGGTGGCAGCCCCGCGGGGCACCCCCAGTG-CCCC
388 GCGAGTGGCGGGTGGCACGCGACGGGTGCTGGGTGGCAGCCCCGCGGGGCACCCCCAGTGCCCCC
32268 CCTAGGTTGCTCAAGTAT-CACCCCCTATAGAGCTTAAGGGGCATTTCATATCCGTTACCAGCGG
453 CCTAGGTTGCTCAAGTATACACCCCCTATAGAGCTTAAGGGGCATTTCATATCCGTTACCAGCGG
*
32332 ACAGGACCATGTTCGAAACAGGGTCGGTTTTTCTGCCGCACCTAGGGTGGCGCAAGCCCGCACCA
518 ACAGGACCACGTTCGAAACAGGGTCGGTTTTTCTGCCGCACCTAGGGTGGCGCAAGCCCGCACCA
* *
32397 CCTCGGGCAGCTGGCGCGCGCCTCGCCCACCCTCGGGCTCGGGCGGCCGAGGCACACCCCCGGCC
583 CCTCGGGCAGCCGGCGCGCGCCTCGCCCACCCTCGGGCGCGGGCGGCCGAGGCACACCCCCGGCC
* *
32462 AGGTGCACGGTGCGCTCCCTGCCC-CCCCCTGGTGTGGGGGCGGCCGGGGCGCACACCATGCGGA
648 AGGTGCACGGTGCGCGCCCTGCCCGCCCCCTGGTGTGGGGGCGGTCGGGGCGCACACCATGCGGA
*
32526 GCACCGGTGCGCGCCTCGCCCACCCTCGGCTGCGGGTGGGAGAA
713 GCACCGGTGCGCGCCTCGCCCACCCTCGGCTGCGGGCGGGAGAA
32570 CGGTGCGCGCCTCGCCCACCCTGGGGGGTGCGGGGCGGCCGCGGCACGCACCCGGCCAGGAGCAC
1 CGGTGCGCGCCTCGCCCACCCTGGGGGGTGCGGGGCGGCCGCGGCACGCACCCGGCCAGGAGCAC
32635 GGTGCGCGCCCTTCCCGCCCCCTGGGGTGGGGGCGGTCGGGGCGCACACCTCGCGGGGCACCGGG
66 GGTGCGCGCCCTTCCCGCCCCCTGGGGTGGGGGCGGTCGGGGCGCACACCTCGCGGGGCACCGGG
32700 TGCGCACCGTTGTCGGGGTACCCAACCGACCGACGCAACGCTAAGGGACGAACACGTTTGGTTGG
131 TGCGCACCGTTGTCGGGGTACCCAACCGACCGACGCAACGCTAAGGGACGAACACGTTTGGTTGG
32765 GGGGGAGGGACGGATGCTGGGGAGGGACTCGTTGCGCACGCTTGGCCCTCCGCATGTTAGAGAGG
196 GGGGGAGGGACGGATGCTGGGGAGGGACTCGTTGCGCACGCTTGGCCCTCCGCATGTTAGAGAGG
32830 GGGGAGGGCCGGATGGTTGGGAGGGACTCGTTGCCCACGCTTGGGCCTCCGCATGTGCTATCGGT
261 GGGGAGGGCCGGATGGTTGGGAGGGACTCGTTGCCCACGCTTGGGCCTCCGCATGTGCTATCGGT
32895 GCCGAATTCGCGGTCCTCGGCACCGTCGCCGGAGAACCTGACCGGCGGTGGGGGGAGCCCCGGCG
326 GCCGAATTCGCGGTCCTCGGCACCGTCGCCGGAGAACCTGACCGGCGGTGGGGGGAGCCCCGGCG
32960 AGTGGCGGGTGGCACGCGACGGGTGCTGGGTGGCAGCCCCGCGGGGCACCCCCAGTGCCCCCCCT
391 AGTGGCGGGTGGCACGCGACGGGTGCTGGGTGGCAGCCCCGCGGGGCACCCCCAGTGCCCCCCCT
33025 AGGTTGCTCAAGTATCACACCCCCTATAGAGCTTAAGGGGCATTTCATATCCGTTACCAGCGGAC
456 AGGTTGCTCAAGTAT-ACACCCCCTATAGAGCTTAAGGGGCATTTCATATCCGTTACCAGCGGAC
33090 AGGACCACGTTCGAAACAGGGTCGGTTTTTCTGCCGCACCTAGGGTGGCGCAAGCCCGCACCACC
520 AGGACCACGTTCGAAACAGGGTCGGTTTTTCTGCCGCACCTAGGGTGGCGCAAGCCCGCACCACC
33155 TCGGGCAGCCGGCGCGCGCCTCGCCCACCCTCGGGCGCGGGCGGCCGAGGCACACCCCCGGCCAG
585 TCGGGCAGCCGGCGCGCGCCTCGCCCACCCTCGGGCGCGGGCGGCCGAGGCACACCCCCGGCCAG
33220 GTGCACGGTGCGCGCCCTGCCCGCCCCCTGGTGTGGGGGCGGTCGGGGCGCACACCATGCGGAGC
650 GTGCACGGTGCGCGCCCTGCCCGCCCCCTGGTGTGGGGGCGGTCGGGGCGCACACCATGCGGAGC
33285 ACCGGTGCGCGCCTCGCCCACCCTCGGCTGCGGGCGGGAGAA
715 ACCGGTGCGCGCCTCGCCCACCCTCGGCTGCGGGCGGGAGAA
33327 CGGTGCG
1 CGGTGCG
33334 GGGTGGGGGC
Statistics
Matches: 1473, Mismatches: 29, Indels: 25
0.96 0.02 0.02
Matches are distributed among these distances:
750 65 0.04
751 13 0.01
752 103 0.07
753 290 0.20
754 278 0.19
755 276 0.19
756 290 0.20
757 99 0.07
758 8 0.01
759 51 0.03
ACGTcount: A:0.13, C:0.34, G:0.39, T:0.14
Consensus pattern (756 bp):
CGGTGCGCGCCTCGCCCACCCTGGGGGGTGCGGGGCGGCCGCGGCACGCACCCGGCCAGGAGCAC
GGTGCGCGCCCTTCCCGCCCCCTGGGGTGGGGGCGGTCGGGGCGCACACCTCGCGGGGCACCGGG
TGCGCACCGTTGTCGGGGTACCCAACCGACCGACGCAACGCTAAGGGACGAACACGTTTGGTTGG
GGGGGAGGGACGGATGCTGGGGAGGGACTCGTTGCGCACGCTTGGCCCTCCGCATGTTAGAGAGG
GGGGAGGGCCGGATGGTTGGGAGGGACTCGTTGCCCACGCTTGGGCCTCCGCATGTGCTATCGGT
GCCGAATTCGCGGTCCTCGGCACCGTCGCCGGAGAACCTGACCGGCGGTGGGGGGAGCCCCGGCG
AGTGGCGGGTGGCACGCGACGGGTGCTGGGTGGCAGCCCCGCGGGGCACCCCCAGTGCCCCCCCT
AGGTTGCTCAAGTATACACCCCCTATAGAGCTTAAGGGGCATTTCATATCCGTTACCAGCGGACA
GGACCACGTTCGAAACAGGGTCGGTTTTTCTGCCGCACCTAGGGTGGCGCAAGCCCGCACCACCT
CGGGCAGCCGGCGCGCGCCTCGCCCACCCTCGGGCGCGGGCGGCCGAGGCACACCCCCGGCCAGG
TGCACGGTGCGCGCCCTGCCCGCCCCCTGGTGTGGGGGCGGTCGGGGCGCACACCATGCGGAGCA
CCGGTGCGCGCCTCGCCCACCCTCGGCTGCGGGCGGGAGAA
Found at i:39450 original size:102 final size:101
Alignment explanation
Indices: 39271--39458 Score: 252
Period size: 102 Copynumber: 1.9 Consensus size: 101
39261 CGGCCCGGGG
* * **
39271 GCGCCCTTCCCGCCCCCGTGGTGGGGGCTCCCGGGGCGCCCACCACGCGGAGCGCCGGTGCGCGC
1 GCGCCCTTCCCGCCCCCGGGGTGGGGGCGCCCGGGGCGCCCACCACGCGGAGCAACGGTGCGCGC
*
39336 CTTGCCCACCCTCCGGTGCGGCCAGGAGCACGGTGC
66 CTCGCCCACCCTCCGGTGCGGCCAGGAGCACGGTGC
** * *
39372 GCGCCCTTCCCGCCCCCTGGGGTGGGGGACGGTCGGGGCGCCCACCTCGCGG-GCAACGGTGGGC
1 GCGCCCTTCCCGCCCCC-GGGGTGGGGG-CGCCCGGGGCGCCCACCACGCGGAGCAACGGTGCGC
* *
39436 GCCTCGCCCGCCCTCTGGTGCGG
64 GCCTCGCCCACCCTCCGGTGCGG
39459 GCGGCCGCGG
Statistics
Matches: 74, Mismatches: 11, Indels: 3
0.84 0.12 0.03
Matches are distributed among these distances:
101 17 0.23
102 38 0.51
103 19 0.26
ACGTcount: A:0.06, C:0.43, G:0.39, T:0.12
Consensus pattern (101 bp):
GCGCCCTTCCCGCCCCCGGGGTGGGGGCGCCCGGGGCGCCCACCACGCGGAGCAACGGTGCGCGC
CTCGCCCACCCTCCGGTGCGGCCAGGAGCACGGTGC
Found at i:47139 original size:403 final size:401
Alignment explanation
Indices: 46211--47225 Score: 1518
Period size: 403 Copynumber: 2.5 Consensus size: 401
46201 GCGCGACCCG
** *
46211 TGCCAGGAACATCGAGCACAATCCCCGACAGGCAACCGGCAAGACGAGCCCACCGTTGCCGATGC
1 TGCCAGGCGCATCGAGCACAATCCCCGACAGGCAACCGGCAGGACGAGCCCACCGTTGCCGATGC
* *
46276 AAGGGCCGCGAGACTGCCCCTGCTCGAGGGGCAATGGCCAGGCCACGCCCTCACCTGCAGCATCT
66 AAGGGCCGCGAGACTGCCCCTGCTCGAGGGGC-ATGGCCAGGCCAAGCCCTCACCTGCAGCTTCT
* *
46341 G-CCAGCGCCACAACCGGGATCATCTACTCGAAATCGAGAACTTGGCAGCATCACCGCAGGTGCG
130 GCCCA-CGCCACAACCGGGA-CACCTACTCGAATTCG-GAACTTGGCAGCATCACCGCAGGTGCG
* * * *
46405 ACCCTTGCCTTCGGGCACGACCACGCCCCGTTACCCGCACACGCATGCCAACCGATCGCGCACGC
192 AGCCTTGCCTTCCGGCACGACCACGCCCCGTTACCCACACACGCATGCCAAACGATCGCGCACGC
* * *
46470 AGCGACCGACGGCCTCACCACGGATCACTTGGACCGCGAAGGGTCTCGTCACCGTAGCTGGGCAT
257 AGCGACCGACGGCCTCACCACGGATCACTTGGACCGCGAAGGGTCTCATCACCGCAGCTCGGCAT
*
46535 CCGGCCACCGAAAACCACGATCGCAAGGGACGCGCGACCTAAATTTTAACCGAGAGGGACACTCA
322 CCGGCCACCGAAAACCACGATCGCAAGGCACGCGCGACCTAAATTTTAACCGAGAGGGACACT-A
* *
46600 GCCGGGGCGCGATCAA
386 GCCGGGGCACGAACAA
* * * * *
46616 TGCCAGGCGCTTCGAGCACAATCCCCGACAGACAACCGGCGGGACGAGCCCACCATTGCCGAAGC
1 TGCCAGGCGCATCGAGCACAATCCCCGACAGGCAACCGGCAGGACGAGCCCACCGTTGCCGATGC
* *
46681 AAGGGCCGCGAGACTTCCCCTGCTC-ACGGGGCATGGCCAGGCCAAGCTC-CACCTGCAGCTTCT
66 AAGGGCCGCGAGACTGCCCCTGCTCGA-GGGGCATGGCCAGGCCAAGCCCTCACCTGCAGCTTCT
*
46744 GCCCACGCCACAACCGGGACAACCTACTCGAATTCAGGAACTTGGCAGAATCACCGCAGGTGCGA
130 GCCCACGCCACAACCGGGAC-ACCTACTCGAATTC-GGAACTTGGCAGCATCACCGCAGGTGCGA
* *
46809 GCCTTGCCTTCCGGCACGACCACGCCCCGTTACCCACACACGCGTGCCAAACGATCGCGCACGTA
193 GCCTTGCCTTCCGGCACGACCACGCCCCGTTACCCACACACGCATGCCAAACGATCGCGCACGCA
** *
46874 GCGACCGGGGGCCTCACCACGGATCACTTGGACCGCGTAGGGTCTCCATCACCGCAGCTCGGCAT
258 GCGACCGACGGCCTCACCACGGATCACTTGGACCGCGAAGGGTCT-CATCACCGCAGCTCGGCAT
* * ** *
46939 CCGGTCACCGAAAACCACGATCGCAAGGCTCGCGCGACCTGGATTTTAATCGAGAGGGACACT-G
322 CCGGCCACCGAAAACCACGATCGCAAGGCACGCGCGACCTAAATTTTAACCGAGAGGGACACTAG
*
47003 CCGGGGCACGAACCA
387 CCGGGGCACGAACAA
* *
47018 TGCCAGGCGCATGGAGCGCAATCCCCGACAGGCAACCGGCAGGAC-ATGCCCACCGTTGCCGATG
1 TGCCAGGCGCATCGAGCACAATCCCCGACAGGCAACCGGCAGGACGA-GCCCACCGTTGCCGATG
*
47082 CAAGGGCCACGAGACTGCCCCTGCTCGAGGGGCATGGCCAGGCCAAGCCCTCACCTGCAGCTTCT
65 CAAGGGCCGCGAGACTGCCCCTGCTCGAGGGGCATGGCCAGGCCAAGCCCTCACCTGCAGCTTCT
* *
47147 ACCCACGCCACAACCGGGACTACCAACTCGAATTCGGGAACTTGGCAGCATCACCGCAGGTGCGA
130 GCCCACGCCACAACCGGGAC-ACCTACTCGAATTC-GGAACTTGGCAGCATCACCGCAGGTGCGA
47212 GCCTTGCCTTCCGG
193 GCCTTGCCTTCCGG
47226 ACGGTGGTGA
Statistics
Matches: 551, Mismatches: 51, Indels: 18
0.89 0.08 0.03
Matches are distributed among these distances:
401 1 0.00
402 114 0.21
403 257 0.47
404 93 0.17
405 86 0.16
ACGTcount: A:0.23, C:0.37, G:0.27, T:0.13
Consensus pattern (401 bp):
TGCCAGGCGCATCGAGCACAATCCCCGACAGGCAACCGGCAGGACGAGCCCACCGTTGCCGATGC
AAGGGCCGCGAGACTGCCCCTGCTCGAGGGGCATGGCCAGGCCAAGCCCTCACCTGCAGCTTCTG
CCCACGCCACAACCGGGACACCTACTCGAATTCGGAACTTGGCAGCATCACCGCAGGTGCGAGCC
TTGCCTTCCGGCACGACCACGCCCCGTTACCCACACACGCATGCCAAACGATCGCGCACGCAGCG
ACCGACGGCCTCACCACGGATCACTTGGACCGCGAAGGGTCTCATCACCGCAGCTCGGCATCCGG
CCACCGAAAACCACGATCGCAAGGCACGCGCGACCTAAATTTTAACCGAGAGGGACACTAGCCGG
GGCACGAACAA
Found at i:48629 original size:25 final size:24
Alignment explanation
Indices: 48600--48647 Score: 71
Period size: 25 Copynumber: 2.0 Consensus size: 24
48590 CCCTTCGTCG
48600 CTTCGATT-CGTCCCTCCCCCTTTCC
1 CTTCG-TTCCGTCCCT-CCCCTTTCC
48625 CTTCGTTCCGTCCCTCCCCTTTC
1 CTTCGTTCCGTCCCTCCCCTTTC
48648 GCAAAGCGGA
Statistics
Matches: 22, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
24 10 0.45
25 12 0.55
ACGTcount: A:0.02, C:0.52, G:0.08, T:0.38
Consensus pattern (24 bp):
CTTCGTTCCGTCCCTCCCCTTTCC
Found at i:49200 original size:62 final size:62
Alignment explanation
Indices: 49134--49360 Score: 211
Period size: 61 Copynumber: 3.7 Consensus size: 62
49124 CATGGTGTGC
*
49134 GCCTCGGCCGCCCCCACACCAGGGGGCGGGCAGGGCACGCACCGTGCACCTGGCCGGGGTGT
1 GCCTCGGCCGCCCCCACACCAGGGGGTGGGCAGGGCACGCACCGTGCACCTGGCCGGGGTGT
* * * * * * * *
49196 GCCTCGACCGCCCGCA-GCC-GAGGGTGGGCGAGGTG--CGCACCGGTG--CTTCGCATGGTGTG
1 GCCTCGGCCGCCCCCACACCAGGGGGTGGGC-AGG-GCACGCACC-GTGCACCTGGC-CGGGGTG
*
49255 C
62 T
*
49256 GCCCCGGCCGCCCCCACACCAGGGGGTGGGCAGGGCACGCACCGTGCACCTGGCCGGGGGTGT
1 GCCTCGGCCGCCCCCACACCAGGGGGTGGGCAGGGCACGCACCGTGCACCTGGCC-GGGGTGT
* * *
49319 GCCTCGGCCGCCCGCAC-CC-GAGAGTGGGC-GAGGCACGCACCG
1 GCCTCGGCCGCCCCCACACCAGGGGGTGGGCAG-GGCACGCACCG
49361 GCTGCCCGAG
Statistics
Matches: 129, Mismatches: 24, Indels: 25
0.72 0.13 0.14
Matches are distributed among these distances:
59 4 0.03
60 34 0.26
61 35 0.27
62 32 0.25
63 24 0.19
ACGTcount: A:0.11, C:0.39, G:0.41, T:0.09
Consensus pattern (62 bp):
GCCTCGGCCGCCCCCACACCAGGGGGTGGGCAGGGCACGCACCGTGCACCTGGCCGGGGTGT
Found at i:49298 original size:122 final size:123
Alignment explanation
Indices: 49081--49361 Score: 465
Period size: 122 Copynumber: 2.3 Consensus size: 123
49071 CACTGTTCTC
* *
49081 CCGCCCGCAACCGAGGGTGGGCGAGGTGCGCACCGATGCTCCGCATGGTGTGCGCCTCGGCCGCC
1 CCGCCCGCAACCGAGGGTGGGCGAGGTGCGCACCGGTGCTCCGCATGGTGTGCGCCCCGGCCGCC
49146 CCCACACCAGGGGGCGGGCAGGGCACGCACCGTGCACCTGGCC-GGGGTGTGCCTCGA
66 CCCACACCAGGGGGCGGGCAGGGCACGCACCGTGCACCTGGCCGGGGGTGTGCCTCGA
* *
49203 CCGCCCGCAGCCGAGGGTGGGCGAGGTGCGCACCGGTGCTTCGCATGGTGTGCGCCCCGGCCGCC
1 CCGCCCGCAACCGAGGGTGGGCGAGGTGCGCACCGGTGCTCCGCATGGTGTGCGCCCCGGCCGCC
* *
49268 CCCACACCAGGGGGTGGGCAGGGCACGCACCGTGCACCTGGCCGGGGGTGTGCCTCGG
66 CCCACACCAGGGGGCGGGCAGGGCACGCACCGTGCACCTGGCCGGGGGTGTGCCTCGA
* * **
49326 CCGCCCGCACCCGAGAGTGGGCGAGGCACGCACCGG
1 CCGCCCGCAACCGAGGGTGGGCGAGGTGCGCACCGG
49362 CTGCCCGAGA
Statistics
Matches: 148, Mismatches: 10, Indels: 1
0.93 0.06 0.01
Matches are distributed among these distances:
122 103 0.70
123 45 0.30
ACGTcount: A:0.12, C:0.38, G:0.41, T:0.10
Consensus pattern (123 bp):
CCGCCCGCAACCGAGGGTGGGCGAGGTGCGCACCGGTGCTCCGCATGGTGTGCGCCCCGGCCGCC
CCCACACCAGGGGGCGGGCAGGGCACGCACCGTGCACCTGGCCGGGGGTGTGCCTCGA
Found at i:49354 original size:61 final size:60
Alignment explanation
Indices: 49081--49360 Score: 212
Period size: 62 Copynumber: 4.6 Consensus size: 60
49071 CACTGTTCTC
* ** * * * *
49081 CCGCCCGCAACCGAGGGTGGGCGAGGTGCGCACCGATGCTCC--GCATGGTGTGCGCCTCGG
1 CCGCCCGCACCCGAGGGTGGGCGAGGCACGCACCG-TGCACCTGGC-CGGGGTGTGCCTCGG
* * * *
49141 CCGCCCCCACACCAGGGGGCGGGC-AGGGCACGCACCGTGCACCTGGCCGGGGTGTGCCTCGA
1 CCGCCCGCAC-CC-GAGGGTGGGCGA-GGCACGCACCGTGCACCTGGCCGGGGTGTGCCTCGG
* ** * * * * * *
49203 CCGCCCGCAGCCGAGGGTGGGCGAGGTGCGCACCGGTG--CTTCGCATGGTGTGCGCCCCGG
1 CCGCCCGCACCCGAGGGTGGGCGAGGCACGCACC-GTGCACCTGGC-CGGGGTGTGCCTCGG
* *
49263 CCGCCCCCACACCAGGGGGTGGGC-AGGGCACGCACCGTGCACCTGGCCGGGGGTGTGCCTCGG
1 CCGCCCGCAC-CC-GAGGGTGGGCGA-GGCACGCACCGTGCACCTGGCC-GGGGTGTGCCTCGG
*
49326 CCGCCCGCACCCGAGAGTGGGCGAGGCACGCACCG
1 CCGCCCGCACCCGAGGGTGGGCGAGGCACGCACCG
49361 GCTGCCCGAG
Statistics
Matches: 167, Mismatches: 38, Indels: 29
0.71 0.16 0.12
Matches are distributed among these distances:
59 4 0.02
60 42 0.25
61 39 0.23
62 56 0.34
63 26 0.16
ACGTcount: A:0.12, C:0.38, G:0.40, T:0.10
Consensus pattern (60 bp):
CCGCCCGCACCCGAGGGTGGGCGAGGCACGCACCGTGCACCTGGCCGGGGTGTGCCTCGG
Found at i:50094 original size:56 final size:56
Alignment explanation
Indices: 50016--50135 Score: 177
Period size: 56 Copynumber: 2.1 Consensus size: 56
50006 TGTGCTCCTG
* *
50016 GCCGCACCCAAGGGTGGCCGAGGCGCGCACCGGTGCTCCGCGTGGTGTGCGGCCCA
1 GCCGCACCCAAGGGTGGCCGAGGCGCGCACCGGCGCTCCGCGTGATGTGCGGCCCA
** * *
50072 GCCGCACCTGAGGGTGGGCGAGGCGCGCACCGGCGCTCCGCGTGATGTGCGGCTCA
1 GCCGCACCCAAGGGTGGCCGAGGCGCGCACCGGCGCTCCGCGTGATGTGCGGCCCA
*
50128 GCTGCACC
1 GCCGCACC
50136 ACAACAGGGG
Statistics
Matches: 57, Mismatches: 7, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
56 57 1.00
ACGTcount: A:0.11, C:0.37, G:0.41, T:0.12
Consensus pattern (56 bp):
GCCGCACCCAAGGGTGGCCGAGGCGCGCACCGGCGCTCCGCGTGATGTGCGGCCCA
Found at i:50649 original size:64 final size:59
Alignment explanation
Indices: 50518--50677 Score: 214
Period size: 64 Copynumber: 2.6 Consensus size: 59
50508 CCGATAGAAA
* *
50518 ATGCGGAGGCCC-ATGCGTGTGCAACGAGTCCCTTCCAAAGCATCCGTCCCCCCTCCAAAC
1 ATGCGGAGGCCCGA-GCGTGTGCAACGAGTCCC-TCCCAAGCATCCCTCCCCCCTCCAAAC
*
50578 ATACGGAGGCCCGAGCGTGTGCAACGAGTCCCTCCCAAGCATTCGTTCCTCCCCCCCTCCAAAC
1 ATGCGGAGGCCCGAGCGTGTGCAACGAGTCCCTCCCAAGCA-TC---CCT-CCCCCCTCCAAAC
*
50642 ATGCGGAGGCCCGAGCATGTGCAACGAGTCCCTCCC
1 ATGCGGAGGCCCGAGCGTGTGCAACGAGTCCCTCCC
50678 CCCCCAAACG
Statistics
Matches: 89, Mismatches: 5, Indels: 8
0.87 0.05 0.08
Matches are distributed among these distances:
59 8 0.09
60 31 0.35
61 1 0.01
63 2 0.02
64 47 0.53
ACGTcount: A:0.21, C:0.40, G:0.23, T:0.16
Consensus pattern (59 bp):
ATGCGGAGGCCCGAGCGTGTGCAACGAGTCCCTCCCAAGCATCCCTCCCCCCTCCAAAC
Found at i:50756 original size:106 final size:107
Alignment explanation
Indices: 50640--50833 Score: 284
Period size: 108 Copynumber: 1.8 Consensus size: 107
50630 CCCCCTCCAA
* *
50640 ACATGCGGAGGCCCGA-GCATGTGCAACGAGTCCCTCCCCC-CCCAAACGTGTTCATCCCTTAGC
1 ACATGCGGAGGCCC-ACGCATGTGCAACGAGCCCCTCCCCCACCCAAACGTCTTCATCCCTTAGC
*
50703 GTTGCAACGGCCGGTTGGGTACCACGAATCTGCCACCGGTAGC
65 GTTGCAACGGCCGGATGGGTACCACGAATCTGCCACCGGTAGC
* * **
50746 ACATGCGGAGGCCCACGCGTGTGCAACGAGCCCCTCCCCCTATCCAAACGTCTTTGTCCCTTAGC
1 ACATGCGGAGGCCCACGCATGTGCAACGAGCCCCTCCCCC-ACCCAAACGTCTTCATCCCTTAGC
*
50811 GTTGCAACGGTCGGATGGGTACC
65 GTTGCAACGGCCGGATGGGTACC
50834 CCGACAACGG
Statistics
Matches: 77, Mismatches: 8, Indels: 4
0.87 0.09 0.04
Matches are distributed among these distances:
105 1 0.01
106 36 0.47
108 40 0.52
ACGTcount: A:0.19, C:0.36, G:0.26, T:0.19
Consensus pattern (107 bp):
ACATGCGGAGGCCCACGCATGTGCAACGAGCCCCTCCCCCACCCAAACGTCTTCATCCCTTAGCG
TTGCAACGGCCGGATGGGTACCACGAATCTGCCACCGGTAGC
Found at i:54689 original size:25 final size:24
Alignment explanation
Indices: 54661--54708 Score: 69
Period size: 25 Copynumber: 2.0 Consensus size: 24
54651 CCCTTCGTCG
*
54661 CTTCGATTCGTCCCTCCCTCTTTCC
1 CTTCGATCCGTCCCTCCC-CTTTCC
*
54686 CTTCGCTCCGTCCCTCCCCTTTC
1 CTTCGATCCGTCCCTCCCCTTTC
54709 ACAAAGTGGA
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
24 5 0.24
25 16 0.76
ACGTcount: A:0.02, C:0.52, G:0.08, T:0.38
Consensus pattern (24 bp):
CTTCGATCCGTCCCTCCCCTTTCC
Found at i:55690 original size:63 final size:63
Alignment explanation
Indices: 55589--55771 Score: 240
Period size: 63 Copynumber: 2.9 Consensus size: 63
55579 TACCGATAGC
**
55589 ACATGCGGAGGCCCGCGCGTGCGCAACGAGTCCCTCCCAACCATCCGTCCCTCCCCCCTCCAA
1 ACATGCGGAGGCCCAAGCGTGCGCAACGAGTCCCTCCCAACCATCCGTCCCTCCCCCCTCCAA
* * * * ** *
55652 ACATGCGGAGGCCCAAGTGTGGGCAACGAGTCCTTCCCAACCATCCGGCCCTCCCCATTCCTA
1 ACATGCGGAGGCCCAAGCGTGCGCAACGAGTCCCTCCCAACCATCCGTCCCTCCCCCCTCCAA
* * * * *
55715 ACATGCGGAGGGCCAGGCGTGCGCAACGAGTCCCTCCCCAGCATTCGTCCCTCCCCC
1 ACATGCGGAGGCCCAAGCGTGCGCAACGAGTCCCTCCCAACCATCCGTCCCTCCCCC
55772 TCAACCAAAT
Statistics
Matches: 101, Mismatches: 19, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
63 101 1.00
ACGTcount: A:0.18, C:0.44, G:0.23, T:0.15
Consensus pattern (63 bp):
ACATGCGGAGGCCCAAGCGTGCGCAACGAGTCCCTCCCAACCATCCGTCCCTCCCCCCTCCAA
Found at i:62710 original size:13 final size:13
Alignment explanation
Indices: 62692--62718 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
62682 ACATTACTCA
62692 AATGTATCGATAC
1 AATGTATCGATAC
62705 AATGTATCGATAC
1 AATGTATCGATAC
62718 A
1 A
62719 CTGATCTTTG
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.41, C:0.15, G:0.15, T:0.30
Consensus pattern (13 bp):
AATGTATCGATAC
Found at i:62770 original size:52 final size:50
Alignment explanation
Indices: 62706--62855 Score: 174
Period size: 52 Copynumber: 2.9 Consensus size: 50
62696 TATCGATACA
* * *
62706 ATGTATCGATACACTGATCTTTGTATCGATACATGTAGGCAAATTTGCCTAG
1 ATGTATCGATACACT-AT-TATGTATCGATACATGCAGGCAAATTTGCCCAG
* *
62758 ATGTATCGATACATTATAAAATGTATCGATACATGCAGGCAAATTTGCCCAG
1 ATGTATCGATACACTAT--TATGTATCGATACATGCAGGCAAATTTGCCCAG
* * *
62810 ACGTATCGACACACTATTACATGTATCGATACATGCAGGTAAATTT
1 ATGTATCGATACACTATT--ATGTATCGATACATGCAGGCAAATTT
62856 TCATATTTCG
Statistics
Matches: 84, Mismatches: 11, Indels: 6
0.83 0.11 0.06
Matches are distributed among these distances:
51 2 0.02
52 82 0.98
ACGTcount: A:0.33, C:0.18, G:0.17, T:0.31
Consensus pattern (50 bp):
ATGTATCGATACACTATTATGTATCGATACATGCAGGCAAATTTGCCCAG
Found at i:71101 original size:31 final size:31
Alignment explanation
Indices: 71063--71363 Score: 339
Period size: 31 Copynumber: 9.7 Consensus size: 31
71053 AAACCTTTTT
*
71063 AAAGTCCACGACTCAGTGGCAATCTCTTCTC
1 AAAGTCCACGACTCAGTGGCAATCTTTTCTC
* *
71094 AAAGTCCATGACTCAGTGGCAATCTCTTCTC
1 AAAGTCCACGACTCAGTGGCAATCTTTTCTC
71125 AAAGTCCACGACTCAGTGGC-ATCCTTTTCTTC
1 AAAGTCCACGACTCAGTGGCAAT-CTTTTC-TC
* *
71157 AAAGTCCACGACTCAGTGGCAATCTCTGCTC
1 AAAGTCCACGACTCAGTGGCAATCTTTTCTC
*
71188 GAAGTCCACGACTCAGTGGC-ATCCTTTTCTTC
1 AAAGTCCACGACTCAGTGGCAAT-CTTTTC-TC
* *
71220 AAAGTCCACGACTTAGTGG-TA-CTTTGTCTC
1 AAAGTCCACGACTCAGTGGCAATCTTT-TCTC
*
71250 AAAGTCCACGACTCAGTGGC-ATCCTTTTCTTT
1 AAAGTCCACGACTCAGTGGCAAT-CTTTTC-TC
*
71282 AAAGTCCACGACTTAGTGGC-AT-TTTGTCTC
1 AAAGTCCACGACTCAGTGGCAATCTTT-TCTC
*
71312 AAAGTCCACGACTCAGTGG-AATTTTTTCTTC
1 AAAGTCCACGACTCAGTGGCAATCTTTTC-TC
* * *
71343 AAAGCCCACAACTCCGTGGCA
1 AAAGTCCACGACTCAGTGGCA
71364 CTTTTTTCGT
Statistics
Matches: 236, Mismatches: 18, Indels: 31
0.83 0.06 0.11
Matches are distributed among these distances:
30 55 0.23
31 106 0.45
32 73 0.31
33 2 0.01
ACGTcount: A:0.24, C:0.29, G:0.18, T:0.29
Consensus pattern (31 bp):
AAAGTCCACGACTCAGTGGCAATCTTTTCTC
Found at i:71176 original size:63 final size:64
Alignment explanation
Indices: 71063--71363 Score: 404
Period size: 62 Copynumber: 4.8 Consensus size: 64
71053 AAACCTTTTT
* *
71063 AAAGTCCACGACTCAGTGGCAAT-CTCTTC-TCAAAGTCCATGACTCAGTGGCAATCTCT-TCTC
1 AAAGTCCACGACTCAGTGGC-ATCCTTTTCTTCAAAGTCCACGACTCAGTGGCAATCTCTGTCTC
71125 AAAGTCCACGACTCAGTGGCATCCTTTTCTTCAAAGTCCACGACTCAGTGGCAATCTCTG-CTC
1 AAAGTCCACGACTCAGTGGCATCCTTTTCTTCAAAGTCCACGACTCAGTGGCAATCTCTGTCTC
* * * *
71188 GAAGTCCACGACTCAGTGGCATCCTTTTCTTCAAAGTCCACGACTTAGTGG-TA-CTTTGTCTC
1 AAAGTCCACGACTCAGTGGCATCCTTTTCTTCAAAGTCCACGACTCAGTGGCAATCTCTGTCTC
* * *
71250 AAAGTCCACGACTCAGTGGCATCCTTTTCTTTAAAGTCCACGACTTAGTGGC-AT-TTTGTCTC
1 AAAGTCCACGACTCAGTGGCATCCTTTTCTTCAAAGTCCACGACTCAGTGGCAATCTCTGTCTC
* * * * *
71312 AAAGTCCACGACTCAGTGGAAT-TTTTTCTTCAAAGCCCACAACTCCGTGGCA
1 AAAGTCCACGACTCAGTGGCATCCTTTTCTTCAAAGTCCACGACTCAGTGGCA
71364 CTTTTTTCGT
Statistics
Matches: 217, Mismatches: 15, Indels: 14
0.88 0.06 0.06
Matches are distributed among these distances:
61 29 0.13
62 108 0.50
63 80 0.37
ACGTcount: A:0.24, C:0.29, G:0.18, T:0.29
Consensus pattern (64 bp):
AAAGTCCACGACTCAGTGGCATCCTTTTCTTCAAAGTCCACGACTCAGTGGCAATCTCTGTCTC
Found at i:71383 original size:34 final size:34
Alignment explanation
Indices: 71343--72002 Score: 604
Period size: 34 Copynumber: 19.7 Consensus size: 34
71333 TTTTTTCTTC
*
71343 AAAGCCCACAACTCCGTGGCACTTTTTTCGTTTT
1 AAAGCCCACAACTCCGTGGCACTTTTTTCTTTTT
* *
71377 AAAGCCCACAACTCTGTGGCACCTTTTTCTTTTT
1 AAAGCCCACAACTCCGTGGCACTTTTTTCTTTTT
* *
71411 AAAGCCCACAACTCCGTGGCACTCTTTTTCCTTCT
1 AAAGCCCACAACTCCGTGGCACT-TTTTTCTTTTT
* *
71446 -AAGTCCACAACTCCGTGGCACCTTTTTCTTTTT
1 AAAGCCCACAACTCCGTGGCACTTTTTTCTTTTT
* *
71479 TAAGCCCACAACTCCGT-GCAACCTTTTTCTTTTT
1 AAAGCCCACAACTCCGTGGC-ACTTTTTTCTTTTT
* *
71513 AAAGCCCACAACTCTGTGACACTTTTTTCTTTTT
1 AAAGCCCACAACTCCGTGGCACTTTTTTCTTTTT
* * * * *
71547 TAAGTCCACGACTCCGTGGCAC---ATTCTTTTC
1 AAAGCCCACAACTCCGTGGCACTTTTTTCTTTTT
* * *
71578 AAAGCCCACAACTCCGTGGCATTCTTTTTCGTTCT
1 AAAGCCCACAACTCCGTGGCACT-TTTTTCTTTTT
* *
71613 -AAGTCCACAACTCCGTGGCACCTTTTTCTTTTT
1 AAAGCCCACAACTCCGTGGCACTTTTTTCTTTTT
* *
71646 AAAGCCCACAACTCCGTGGCACTCTTTTTCGTTCT
1 AAAGCCCACAACTCCGTGGCACT-TTTTTCTTTTT
* *
71681 -AAGTCCACAACTCCGTGGCACCTTTTTCTTTTT
1 AAAGCCCACAACTCCGTGGCACTTTTTTCTTTTT
* * * *
71714 AAAGCCTACAACTCTGTGGCACTCTTTTTCGTTCT
1 AAAGCCCACAACTCCGTGGCACT-TTTTTCTTTTT
* ** *
71749 -AAGTCCACAACTCTATGGCACCTTTTTCTTTTT
1 AAAGCCCACAACTCCGTGGCACTTTTTTCTTTTT
* *
71782 AAAGCCCACAACTCCGTGGCACTCTTTTTCCTTCT
1 AAAGCCCACAACTCCGTGGCACT-TTTTTCTTTTT
* * *
71817 -AAGTCCACAACTCTGTGGCAC------CCTTTT
1 AAAGCCCACAACTCCGTGGCACTTTTTTCTTTTT
* * * * * *
71844 AAAGTCCAGAACCCCGTGGCACCTTGTTCCTTTT
1 AAAGCCCACAACTCCGTGGCACTTTTTTCTTTTT
* *
71878 -AAGTCCACAACTCCGTGGCAC---CTTCTTTTT
1 AAAGCCCACAACTCCGTGGCACTTTTTTCTTTTT
* *
71908 AAAGCCCACAACTCTGTGGCACTCTTTTTCCCTTTT
1 AAAGCCCACAACTCCGTGGCACT-TTTTT-CTTTTT
* * * * *
71944 AAAGTCCACAACTTCGTGGCACCTTGTTCCTTTT
1 AAAGCCCACAACTCCGTGGCACTTTTTTCTTTTT
* *
71978 -AAGTCCACAACTTCGTGGCATCTTT
1 AAAGCCCACAACTCCGTGGCA-CTTT
72003 CACCCTTCTC
Statistics
Matches: 516, Mismatches: 82, Indels: 56
0.79 0.13 0.09
Matches are distributed among these distances:
27 5 0.01
28 18 0.03
30 7 0.01
31 44 0.09
33 77 0.15
34 293 0.57
35 48 0.09
36 24 0.05
ACGTcount: A:0.20, C:0.31, G:0.13, T:0.35
Consensus pattern (34 bp):
AAAGCCCACAACTCCGTGGCACTTTTTTCTTTTT
Found at i:71454 original size:68 final size:67
Alignment explanation
Indices: 71348--72002 Score: 728
Period size: 68 Copynumber: 9.8 Consensus size: 67
71338 TCTTCAAAGC
* * * *
71348 CCACAACTCCGTGGCACTTTTTTCGTTTTAAAGCCCACAACTCTGTGGCACCTTTTTCTTTTTAA
1 CCACAACTCCGTGGCACCTTTTTCTTTTTAAAGCCCACAACTCCGTGGCACCTTTTTCCTTTT-A
*
71413 AGC
65 AGT
* * * *
71416 CCACAACTCCGTGGCACTCTTTTTCCTTCT-AAGTCCACAACTCCGTGGCACCTTTTTCTTTTTT
1 CCACAACTCCGTGGCAC-CTTTTTCTTTTTAAAGCCCACAACTCCGTGGCACCTTTTTC-CTTTT
*
71480 AAGC
64 AAGT
* * * *
71484 CCACAACTCCGT-GCAACCTTTTTCTTTTTAAAGCCCACAACTCTGTGACACTTTTTTCTTTTTT
1 CCACAACTCCGTGGC-ACCTTTTTCTTTTTAAAGCCCACAACTCCGTGGCACCTTTTTC-CTTTT
71548 AAGT
64 AAGT
* * * * * *
71552 CCACGACTCCGTGGCA-C--ATTCTTTTCAAAGCCCACAACTCCGTGGCATTCTTTTTCGTTCTA
1 CCACAACTCCGTGGCACCTTTTTCTTTTTAAAGCCCACAACTCCGTGGCA-CCTTTTTCCTTTTA
71614 AGT
65 AGT
* *
71617 CCACAACTCCGTGGCACCTTTTTCTTTTTAAAGCCCACAACTCCGTGGCACTCTTTTTCGTTCTA
1 CCACAACTCCGTGGCACCTTTTTCTTTTTAAAGCCCACAACTCCGTGGCAC-CTTTTTCCTTTTA
71682 AGT
65 AGT
* * * *
71685 CCACAACTCCGTGGCACCTTTTTCTTTTTAAAGCCTACAACTCTGTGGCACTCTTTTTCGTTCTA
1 CCACAACTCCGTGGCACCTTTTTCTTTTTAAAGCCCACAACTCCGTGGCAC-CTTTTTCCTTTTA
71750 AGT
65 AGT
** *
71753 CCACAACTCTATGGCACCTTTTTCTTTTTAAAGCCCACAACTCCGTGGCACTCTTTTTCCTTCTA
1 CCACAACTCCGTGGCACCTTTTTCTTTTTAAAGCCCACAACTCCGTGGCAC-CTTTTTCCTTTTA
71818 AGT
65 AGT
* * * * *
71821 CCACAACTCTGTGGCACC-----C-TTTTAAAGTCCAGAACCCCGTGGCACCTTGTTCCTTTTAA
1 CCACAACTCCGTGGCACCTTTTTCTTTTTAAAGCCCACAACTCCGTGGCACCTTTTTCCTTTTAA
71880 GT
66 GT
*
71882 CCACAACTCCGTGGCACC---TTCTTTTTAAAGCCCACAACTCTGTGGCACTCTTTTTCCCTTTT
1 CCACAACTCCGTGGCACCTTTTTCTTTTTAAAGCCCACAACTCCGTGGCAC-CTTTTT-CCTTTT
71944 AAAGT
64 -AAGT
* * * * * *
71949 CCACAACTTCGTGGCACCTTGTTCCTTTT-AAGTCCACAACTTCGTGGCATCTTT
1 CCACAACTCCGTGGCACCTTTTTCTTTTTAAAGCCCACAACTCCGTGGCACCTTT
72003 CACCCTTCTC
Statistics
Matches: 518, Mismatches: 50, Indels: 38
0.85 0.08 0.06
Matches are distributed among these distances:
61 31 0.06
62 23 0.04
63 2 0.00
64 22 0.04
65 53 0.10
66 13 0.03
67 34 0.07
68 300 0.58
69 33 0.06
70 7 0.01
ACGTcount: A:0.20, C:0.31, G:0.13, T:0.36
Consensus pattern (67 bp):
CCACAACTCCGTGGCACCTTTTTCTTTTTAAAGCCCACAACTCCGTGGCACCTTTTTCCTTTTAA
GT
Found at i:71465 original size:102 final size:101
Alignment explanation
Indices: 71333--72002 Score: 706
Period size: 102 Copynumber: 6.7 Consensus size: 101
71323 CTCAGTGGAA
* * * * * *
71333 TTTTTTCTTCAAAGCCCACAACTCCGTGGCACTTTTTTCGTTTTAAAGCCCACAACTCTGTGGCA
1 TTTTTCCTTCTAAGTCCACAACTCCGTGGCACCTTTTTCCTTTT-AAGCCCACAACTCCGTGGCA
*
71398 CCTTTTTCTTTTTAAAGCCCACAACTCCGTGGCACTC
65 CCTTTTTCTTTTTAAAGCCCACAACTCTGTGGCACTC
*
71435 TTTTTCCTTCTAAGTCCACAACTCCGTGGCACCTTTTTCTTTTTTAAGCCCACAACTCCGT-GCA
1 TTTTTCCTTCTAAGTCCACAACTCCGTGGCACCTTTTTC-CTTTTAAGCCCACAACTCCGTGGC-
*
71499 ACCTTTTTCTTTTTAAAGCCCACAACTCTGTGACACT-
64 ACCTTTTTCTTTTTAAAGCCCACAACTCTGTGGCACTC
* * * * * **
71536 TTTTTCTTTTTTAAGTCCACGACTCCGTGGCACATTCTT--TTCAAAGCCCACAACTCCGTGGCA
1 TTTTTC-CTTCTAAGTCCACAACTCCGTGGCACCTTTTTCCTTTTAAGCCCACAACTCCGTGGCA
* * * * *
71599 TTCTTTTTCGTTCT-AAGTCCACAACTCCGTGGCAC-C
65 -CCTTTTTCTTTTTAAAGCCCACAACTCTGTGGCACTC
* * * * * *
71635 TTTTTCTTTTTAAAGCCCACAACTCCGTGGCACTCTTTTTCGTTCTAAGTCCACAACTCCGTGGC
1 TTTTTCCTTCT-AAGTCCACAACTCCGTGGCAC-CTTTTTCCTTTTAAGCCCACAACTCCGTGGC
*
71700 ACCTTTTTCTTTTTAAAGCCTACAACTCTGTGGCACTC
64 ACCTTTTTCTTTTTAAAGCCCACAACTCTGTGGCACTC
* ** *
71738 TTTTTCGTTCTAAGTCCACAACTCTATGGCACCTTTTTCTTTTTAAAGCCCACAACTCCGTGGCA
1 TTTTTCCTTCTAAGTCCACAACTCCGTGGCACCTTTTTCCTTTT-AAGCCCACAACTCCGTGGCA
* * *
71803 CTCTTTTTCCTTCT-AAGTCCACAACTCTGTGGCAC-C
65 C-CTTTTTCTTTTTAAAGCCCACAACTCTGTGGCACTC
* * * * * *
71839 --CTT--TT-AAAGTCCAGAACCCCGTGGCACCTTGTTCCTTTTAAGTCCACAACTCCGTGGCAC
1 TTTTTCCTTCTAAGTCCACAACTCCGTGGCACCTTTTTCCTTTTAAGCCCACAACTCCGTGGCAC
71899 C---TTCTTTTTAAAGCCCACAACTCTGTGGCACTC
66 CTTTTTCTTTTTAAAGCCCACAACTCTGTGGCACTC
* * * * *
71932 TTTTTCCCTTTTAAAGTCCACAACTTCGTGGCACCTTGTTCCTTTTAAGTCCACAACTTCGTGGC
1 TTTTT-CCTTCT-AAGTCCACAACTCCGTGGCACCTTTTTCCTTTTAAGCCCACAACTCCGTGGC
*
71997 ATCTTT
64 ACCTTT
72003 CACCCTTCTC
Statistics
Matches: 478, Mismatches: 64, Indels: 51
0.81 0.11 0.09
Matches are distributed among these distances:
91 6 0.01
92 20 0.04
93 1 0.00
94 1 0.00
95 22 0.05
96 27 0.06
97 2 0.00
98 7 0.01
99 64 0.13
100 66 0.14
101 29 0.06
102 209 0.44
103 24 0.05
ACGTcount: A:0.20, C:0.31, G:0.13, T:0.36
Consensus pattern (101 bp):
TTTTTCCTTCTAAGTCCACAACTCCGTGGCACCTTTTTCCTTTTAAGCCCACAACTCCGTGGCAC
CTTTTTCTTTTTAAAGCCCACAACTCTGTGGCACTC
Found at i:72040 original size:32 final size:33
Alignment explanation
Indices: 72004--72333 Score: 480
Period size: 32 Copynumber: 10.2 Consensus size: 33
71994 GGCATCTTTC
72004 ACCCTTCTC-AAAGCCCACACAAGTCGGTGGCA
1 ACCCTTCTCTAAAGCCCACACAAGTCGGTGGCA
* *
72036 ACCC-T-TCTAAATCCCACAAAAGTCGGTGGCA
1 ACCCTTCTCTAAAGCCCACACAAGTCGGTGGCA
* *
72067 ACCCTTCTC-AAAGCCGACACAAGTCGATGGCA
1 ACCCTTCTCTAAAGCCCACACAAGTCGGTGGCA
72099 ACCC-TCTCTAAAGCCCACACAAGTCGGTGGCA
1 ACCCTTCTCTAAAGCCCACACAAGTCGGTGGCA
* * *
72131 ACCTTTTTC-AAAGCCCACACAAGTCGGTGGTA
1 ACCCTTCTCTAAAGCCCACACAAGTCGGTGGCA
72163 A-CCTTCTTCTAAAGCCCACACAAGTCGGTGGCA
1 ACCCTTC-TCTAAAGCCCACACAAGTCGGTGGCA
*
72196 ACCC-TCTCTAAAGCCCACACAAGTTGGTGGCA
1 ACCCTTCTCTAAAGCCCACACAAGTCGGTGGCA
*
72228 ACCATTCTCTAAAGCCCACACAAGTCGGTGGCA
1 ACCCTTCTCTAAAGCCCACACAAGTCGGTGGCA
*
72261 ACCC-TCTCTAAAGCCCACACAAGTTGGTGGCA
1 ACCCTTCTCTAAAGCCCACACAAGTCGGTGGCA
* *
72293 ACCATTCTCTAAAGCCCACACAAGTCCGTGGCA
1 ACCCTTCTCTAAAGCCCACACAAGTCGGTGGCA
72326 ACCCTTCT
1 ACCCTTCT
72334 AAGCCCAATA
Statistics
Matches: 265, Mismatches: 23, Indels: 19
0.86 0.07 0.06
Matches are distributed among these distances:
30 2 0.01
31 33 0.12
32 135 0.51
33 93 0.35
34 2 0.01
ACGTcount: A:0.29, C:0.35, G:0.18, T:0.19
Consensus pattern (33 bp):
ACCCTTCTCTAAAGCCCACACAAGTCGGTGGCA
Found at i:72197 original size:65 final size:63
Alignment explanation
Indices: 72004--72340 Score: 471
Period size: 65 Copynumber: 5.3 Consensus size: 63
71994 GGCATCTTTC
* * *
72004 ACCCTTCTCAAAGCCCACACAAGTCGGTGGCAACCCT-TCTAAATCCCACAAAAGTCGGTGGCA
1 ACCC-TCTCAAAGCCCACACAAGTCGGTGGCAACCTTCTCTAAAGCCCACACAAGTCGGTGGCA
* * *
72067 ACCCTTCTCAAAGCCGACACAAGTCGATGGCAACCCTCTCTAAAGCCCACACAAGTCGGTGGCA
1 ACCC-TCTCAAAGCCCACACAAGTCGGTGGCAACCTTCTCTAAAGCCCACACAAGTCGGTGGCA
* * *
72131 ACCTTTTTCAAAGCCCACACAAGTCGGTGGTAACCTTCTTCTAAAGCCCACACAAGTCGGTGGCA
1 ACC-CTCTCAAAGCCCACACAAGTCGGTGGCAACCTTC-TCTAAAGCCCACACAAGTCGGTGGCA
*
72196 ACCCTCTCTAAAGCCCACACAAGTTGGTGGCAACCATTCTCTAAAGCCCACACAAGTCGGTGGCA
1 ACCCTCTC-AAAGCCCACACAAGTCGGTGGCAACC-TTCTCTAAAGCCCACACAAGTCGGTGGCA
* *
72261 ACCCTCTCTAAAGCCCACACAAGTTGGTGGCAACCATTCTCTAAAGCCCACACAAGTCCGTGGCA
1 ACCCTCTC-AAAGCCCACACAAGTCGGTGGCAACC-TTCTCTAAAGCCCACACAAGTCGGTGGCA
*
72326 ACCCT-TCTAAGCCCA
1 ACCCTCTCAAAGCCCA
72341 ATATAGCTGG
Statistics
Matches: 253, Mismatches: 16, Indels: 10
0.91 0.06 0.04
Matches are distributed among these distances:
63 42 0.17
64 60 0.24
65 148 0.58
66 3 0.01
ACGTcount: A:0.29, C:0.35, G:0.18, T:0.19
Consensus pattern (63 bp):
ACCCTCTCAAAGCCCACACAAGTCGGTGGCAACCTTCTCTAAAGCCCACACAAGTCGGTGGCA
Found at i:72397 original size:49 final size:49
Alignment explanation
Indices: 72333--73283 Score: 945
Period size: 43 Copynumber: 20.1 Consensus size: 49
72323 GCAACCCTTC
* * *
72333 TAAGCCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTCTTCTT
1 TAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTCATCTT
* * *
72382 TAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCA----C--CTT
1 TAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTCATCTT
*
72425 TAAGTCTAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTCATCTT
1 TAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTCATCTT
* * *
72474 TAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCA----C--CTT
1 TAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTCATCTT
* * *
72517 TAAGTCCAATATCGTTGGCCTTGAATCAGCACATTGGCAACC--C-T-TC
1 TAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGC-ACCTTCATCTT
* * *
72563 TAAGCCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTCTTCTT
1 TAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTCATCTT
* * *
72612 TAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCA----C--CTT
1 TAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTCATCTT
* *
72655 TAAGTCCAATATCGCTGGCCTTGAATTAGCATATTGGCATCTTCATCTT
1 TAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTCATCTT
* * *
72704 TAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCA----C--CTT
1 TAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTCATCTT
*
72747 TAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTCTTCTT
1 TAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTCATCTT
* * *
72796 TAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCACC-TC--C--
1 TAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTCATCTT
* *
72840 -AAGTCCAATATCGCTGGCTTTGAATCAGCATATTGGCGCCTTTGTCATCTT
1 TAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCACC--T-TCATCTT
* * *
72891 TAAGTCTAATATCGCTAGCCTTGAATCAGCATATTGGCACCATCATCTT
1 TAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTCATCTT
* * *
72940 TAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCACC-TC--C--
1 TAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTCATCTT
** * *
72984 -AAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGTGCCTTTGTCAACTC
1 TAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCACC--T-TCATCTT
* * * * *
73035 CAAATCAAATATCGCTGGCCTTGAATCAGCATATTGGGACCCTCATCTTT
1 TAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTCATC-TT
* * *
73085 TAAG-CCTAATGTCGTTGGCCTTGAATCAGCACATTGGCA----C--CTT
1 TAAGTCC-AATATCGCTGGCCTTGAATCAGCATATTGGCACCTTCATCTT
*
73128 TAAGTCCAATATCGCAGGCCTTGAATCAGCATATTGGCACCTTTATCATCTT
1 TAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCACC--T-TCATCTT
* *
73180 TAAGTCCAATATCGCTGGCCTTGAATCTA-CATATTGGCGTCTTTGTCATCTT
1 TAAGTCCAATATCGCTGGCCTTGAATC-AGCATATTGGC-AC-CT-TCATCTT
* *
73232 TAAGTCCAATGTCGCTGGCCTTGAATCAGCACATTGGCACCTTCATCTT
1 TAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTCATCTT
73281 TAA
1 TAA
73284 CATTCCTAAG
Statistics
Matches: 759, Mismatches: 83, Indels: 120
0.79 0.09 0.12
Matches are distributed among these distances:
43 257 0.34
44 4 0.01
45 7 0.01
46 39 0.05
47 8 0.01
48 5 0.01
49 250 0.33
50 33 0.04
51 2 0.00
52 152 0.20
53 2 0.00
ACGTcount: A:0.25, C:0.26, G:0.18, T:0.31
Consensus pattern (49 bp):
TAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTCATCTT
Found at i:72497 original size:92 final size:91
Alignment explanation
Indices: 72328--73274 Score: 772
Period size: 92 Copynumber: 10.0 Consensus size: 91
72318 CCGTGGCAAC
* * * *
72328 CCTTCTAAGCCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTCTTCTTTAAGTCCAATG
1 CCTT-TAAGTCCAATATCGCTGGCCTTGAATCAGCACATTGGCACC-TC-TCTTTAAGTCCAATA
* *
72393 TAGCTGGCCTTGAATCAGCACATTGGCA-
63 TCGCTGGCCTTGAATCAGCATATTGGCAT
* * *
72421 CCTTTAAGTCTAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTCATCTTTAAGTCCAATGT
1 CCTTTAAGTCCAATATCGCTGGCCTTGAATCAGCACATTGGCACC-TC-TCTTTAAGTCCAATAT
* *
72486 AGCTGGCCTTGAATCAGCACATTGGCA-
64 CGCTGGCCTTGAATCAGCATATTGGCAT
* * * *
72513 CCTTTAAGTCCAATATCGTTGGCCTTGAATCAGCACATTGGCAACC-CT-TCTAAGCCCAATATA
1 CCTTTAAGTCCAATATCGCTGGCCTTGAATCAGCACATTGGC-ACCTCTCTTTAAGTCCAATATC
72576 GCTGGCCTTGAATCAGCATATTGGCACCTT
65 GCTGGCCTTGAATCAGCATATTGGCA---T
* *
72606 CTTCTTTAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCA---C-CTTTAAGTCCAATAT
1 C--CTTTAAGTCCAATATCGCTGGCCTTGAATCAGCACATTGGCACCTCTCTTTAAGTCCAATAT
*
72667 CGCTGGCCTTGAATTAGCATATTGGCATCTT
64 CGCTGGCCTTGAATCAGCATATTGGCA---T
* *
72698 CATCTTTAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCA---C-CTTTAAGTCCAATAT
1 C--CTTTAAGTCCAATATCGCTGGCCTTGAATCAGCACATTGGCACCTCTCTTTAAGTCCAATAT
72759 CGCTGGCCTTGAATCAGCATATTGGCACCTT
64 CGCTGGCCTTGAATCAGCATATTGGCA---T
* *
72790 CTTCTTTAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCACCTC-C---AAGTCCAATAT
1 C--CTTTAAGTCCAATATCGCTGGCCTTGAATCAGCACATTGGCACCTCTCTTTAAGTCCAATAT
* *
72851 CGCTGGCTTTGAATCAGCATATTGGCGCCTTTGT
64 CGCTGGCCTTGAATCAGCATATT-G-G-C---AT
* * *
72885 CATCTTTAAGTCTAATATCGCTAGCCTTGAATCAGCATATTGGCACCATCATCTTTAAGTCCAAT
1 C--CTTTAAGTCCAATATCGCTGGCCTTGAATCAGCACATTGGCACC-TC-TCTTTAAGTCCAAT
* * *
72950 GTAGCTGGCCTTGAATCAGCACATTGGCA-
62 ATCGCTGGCCTTGAATCAGCATATTGGCAT
** * ** * ** * *
72979 CCTCCAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGTGCCTTTGTCAACTCCAAATCAAA
1 CCTTTAAGTCCAATATCGCTGGCCTTGAATCAGCACATTGGCACC----TC-TCTTTAAGTCCAA
73044 TATCGCTGGCCTTGAATCAGCATATTGGGACCCTCAT
61 TATCGCTGGCCTTGAATCAGCATATT-GG-----CAT
* * *
73081 CTTTTAAG-CCTAATGTCGTTGGCCTTGAATCAGCACATTGGCA---C-CTTTAAGTCCAATATC
1 CCTTTAAGTCC-AATATCGCTGGCCTTGAATCAGCACATTGGCACCTCTCTTTAAGTCCAATATC
*
73141 GCAGGCCTTGAATCAGCATATTGGCACCTTTAT
65 GCTGGCCTTGAATCAGCATATTGG---C---AT
* * *
73174 CATCTTTAAGTCCAATATCGCTGGCCTTGAATCTA-CATATTGGCGTCTTTGTCATCTTTAAGTC
1 C--CTTTAAGTCCAATATCGCTGGCCTTGAATC-AGCACATTGGC-AC---CTC-TCTTTAAGTC
* *
73238 CAATGTCGCTGGCCTTGAATCAGCACATTGGCA-
58 CAATATCGCTGGCCTTGAATCAGCATATTGGCAT
73271 CCTT
1 CCTT
73275 CATCTTTAAC
Statistics
Matches: 730, Mismatches: 74, Indels: 98
0.81 0.08 0.11
Matches are distributed among these distances:
89 37 0.05
90 3 0.00
91 1 0.00
92 370 0.51
93 45 0.06
94 3 0.00
95 153 0.21
96 7 0.01
97 1 0.00
98 3 0.00
99 1 0.00
100 1 0.00
101 35 0.05
102 33 0.05
104 37 0.05
ACGTcount: A:0.25, C:0.26, G:0.18, T:0.31
Consensus pattern (91 bp):
CCTTTAAGTCCAATATCGCTGGCCTTGAATCAGCACATTGGCACCTCTCTTTAAGTCCAATATCG
CTGGCCTTGAATCAGCATATTGGCAT
Found at i:72918 original size:52 final size:51
Alignment explanation
Indices: 72840--73283 Score: 398
Period size: 52 Copynumber: 9.0 Consensus size: 51
72830 TGGCACCTCC
*
72840 AAGTCCAATATCGCTGGCTTTGAATCAGCATATTGGCGCCTTTGTCATCTTT
1 AAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCGCC-TTGTCATCTTT
* * * *
72892 AAGTCTAATATCGCTAGCCTTGAATCAGCATATTGGCACC--ATCATCTTT
1 AAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCGCCTTGTCATCTTT
* * * *
72941 AAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCACC---TC--C---
1 AAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCGCCTTGTCATCTTT
* * **
72984 AAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGTGCCTTTGTCAACTCC
1 AAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCGCC-TTGTCATCTTT
* * *
73036 AAATCAAATATCGCTGGCCTTGAATCAGCATATTGG-GACC--CTCATCTTTT
1 AAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCG-CCTTGTCATC-TTT
* * * *
73086 AAG-CCTAATGTCGTTGGCCTTGAATCAGCACATT---G----G-CACCTTT
1 AAGTCC-AATATCGCTGGCCTTGAATCAGCATATTGGCGCCTTGTCATCTTT
* * *
73129 AAGTCCAATATCGCAGGCCTTGAATCAGCATATTGGCACCTTTATCATCTTT
1 AAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCGCC-TTGTCATCTTT
*
73181 AAGTCCAATATCGCTGGCCTTGAATCTA-CATATTGGCGTCTTTGTCATCTTT
1 AAGTCCAATATCGCTGGCCTTGAATC-AGCATATTGGCG-CCTTGTCATCTTT
* * *
73233 AAGTCCAATGTCGCTGGCCTTGAATCAGCACATTGGCACC-T-TCATCTTT
1 AAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCGCCTTGTCATCTTT
73282 AA
1 AA
73284 CATTCCTAAG
Statistics
Matches: 324, Mismatches: 43, Indels: 53
0.77 0.10 0.13
Matches are distributed among these distances:
43 65 0.20
44 5 0.02
46 1 0.00
47 2 0.01
48 3 0.01
49 59 0.18
50 29 0.09
51 3 0.01
52 155 0.48
53 2 0.01
ACGTcount: A:0.25, C:0.25, G:0.18, T:0.32
Consensus pattern (51 bp):
AAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCGCCTTGTCATCTTT
Found at i:76745 original size:13 final size:13
Alignment explanation
Indices: 76727--76753 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
76717 ACATTACTCA
76727 AATGTATCGATAC
1 AATGTATCGATAC
76740 AATGTATCGATAC
1 AATGTATCGATAC
76753 A
1 A
76754 CTGATCTTTG
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.41, C:0.15, G:0.15, T:0.30
Consensus pattern (13 bp):
AATGTATCGATAC
Found at i:76805 original size:52 final size:50
Alignment explanation
Indices: 76741--76890 Score: 183
Period size: 52 Copynumber: 2.9 Consensus size: 50
76731 TATCGATACA
* *
76741 ATGTATCGATACACTGATCTTTGTATCGATACATGTAGGCAAATTTGCCCAG
1 ATGTATCGATACACT-AT-TATGTATCGATACATGCAGGCAAATTTGCCCAG
* *
76793 ATGTATCGATACATTATAAAATGTATCGATACATGCAGGCAAATTTGCCCAG
1 ATGTATCGATACACTAT--TATGTATCGATACATGCAGGCAAATTTGCCCAG
* * *
76845 ACGTATCGACACACTATTACATGTATCGATACATGCAGGTAAATTT
1 ATGTATCGATACACTATT--ATGTATCGATACATGCAGGCAAATTT
76891 TCATATTTCG
Statistics
Matches: 85, Mismatches: 10, Indels: 6
0.84 0.10 0.06
Matches are distributed among these distances:
51 2 0.02
52 83 0.98
ACGTcount: A:0.33, C:0.19, G:0.17, T:0.31
Consensus pattern (50 bp):
ATGTATCGATACACTATTATGTATCGATACATGCAGGCAAATTTGCCCAG
Found at i:82830 original size:13 final size:13
Alignment explanation
Indices: 82812--82836 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
82802 CAAAGATCAG
82812 TGTATCGATACAA
1 TGTATCGATACAA
82825 TGTATCGATACA
1 TGTATCGATACA
82837 TTTGAGTAAT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.36, C:0.16, G:0.16, T:0.32
Consensus pattern (13 bp):
TGTATCGATACAA
Found at i:82917 original size:13 final size:13
Alignment explanation
Indices: 82899--82923 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
82889 CAAAAAAATA
82899 TGTATCGATACAT
1 TGTATCGATACAT
82912 TGTATCGATACA
1 TGTATCGATACA
82924 ACACTTTATA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.36
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:82938 original size:33 final size:33
Alignment explanation
Indices: 82877--82943 Score: 89
Period size: 33 Copynumber: 2.0 Consensus size: 33
82867 AGTAGCTTAA
*
82877 ATTGTATCGATACAAAAAAATATGTATCGATAC
1 ATTGTATCGATACAAAAAAATATATATCGATAC
* ***
82910 ATTGTATCGATACAACACTTTATATATCGATAC
1 ATTGTATCGATACAAAAAAATATATATCGATAC
82943 A
1 A
82944 AATCGTTGAA
Statistics
Matches: 29, Mismatches: 5, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
33 29 1.00
ACGTcount: A:0.42, C:0.15, G:0.10, T:0.33
Consensus pattern (33 bp):
ATTGTATCGATACAAAAAAATATATATCGATAC
Found at i:83464 original size:52 final size:50
Alignment explanation
Indices: 83396--84305 Score: 553
Period size: 43 Copynumber: 18.4 Consensus size: 50
83386 AAAAGGATGT
* * * * *
83396 CAATGTGCTGATTCAAGGTCAGCGACATTAGACTTGAAGATGAGAAAAATGC
1 CAATATGCTGATTCAAGGCCAGCTACATTGGACTT-AAGA-GAGAAAAGTGC
* * * ** *
83448 CAATGTGCTGATTCAAGGCCAACAACATTGGGTTTTAA-AGATGATGAAGGTGC
1 CAATATGCTGATTCAAGGCCAGCTACATT-GGACTTAAGAGA-GA--AAAGTGC
* * *
83501 CAATATGCTGATTCAAGGCCAGCTACACTGAACTTAA-AGATGGAAAAGGTGT
1 CAATATGCTGATTCAAGGCCAGCTACATTGGACTTAAGAGA--GAAAA-GTGC
*
83553 CAATATGCTGATTCAAGGCCAGCTATATTGGACTT-------AAAAGTGC
1 CAATATGCTGATTCAAGGCCAGCTACATTGGACTTAAGAGAGAAAAGTGC
* * * * *
83596 CAATGTGCTGATTCAAGGCTAGCTACATTGGACTTAA-AGATAAAGGTAC
1 CAATATGCTGATTCAAGGCCAGCTACATTGGACTTAAGAGAGAAAAGTGC
* * * *
83645 CAATATGCTGATTCAAGGCCAGCGATATTAGAATT--GA-AG----GTGC
1 CAATATGCTGATTCAAGGCCAGCTACATTGGACTTAAGAGAGAAAAGTGC
*
83688 CAATATGCTGATTCAAGGCCAGCTACATTGGACTTAAG-GA-AGAAGGTGC
1 CAATATGCTGATTCAAGGCCAGCTACATTGGACTTAAGAGAGA-AAAGTGC
* *
83737 CAATATACTGATTCAAGGCCAGCTATATTGGACTT-A-A-AG----GTGC
1 CAATATGCTGATTCAAGGCCAGCTACATTGGACTTAAGAGAGAAAAGTGC
*
83780 CAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAA-AGATGGAAAAGGTGC
1 CAATATGCTGATTCAAGGCCAGCTACATTGGACTTAAGAGA--GAAAA-GTGC
* *
83832 CAATGTGCTGATTCAAGGCCAGCTATATTGGACTT--GA-AG---A-TGC
1 CAATATGCTGATTCAAGGCCAGCTACATTGGACTTAAGAGAGAAAAGTGC
*
83875 CAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAA-AGATGGAAAAGGTGC
1 CAATATGCTGATTCAAGGCCAGCTACATTGGACTTAAGAGA--GAAAA-GTGC
*
83927 CAATATGCTGATTCAAGGCCAGCTATATTGGACTT--GA-AG----GTGC
1 CAATATGCTGATTCAAGGCCAGCTACATTGGACTTAAGAGAGAAAAGTGC
* *
83970 CAATGTGCTGATTCAAGGCTAGCTACATTGGACTTAA-AGATGGAAAAGGTGC
1 CAATATGCTGATTCAAGGCCAGCTACATTGGACTTAAGAGA--GAAAA-GTGC
* * * * **
84022 CGATGTGCTGATTGGACTTGAAGGTGCCAATGTGCTGATTCA-AGGCCAGCTATATTG-GACTTG
1 CAATATGCTGATT---C---AA-G-GCC-A---GCT-A--CATTGG--A-CT-TA-AGAGA--GA
*
84085 AAGGTGC
44 AAAGTGC
* * *
84092 CAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAA-AGATAAAGGTGC
1 CAATATGCTGATTCAAGGCCAGCTACATTGGACTTAAGAGAGAAAAGTGC
*
84141 CAATATGCTGATTCAAGGCCAGCTATATTGGACTT--GA-AG----GTGC
1 CAATATGCTGATTCAAGGCCAGCTACATTGGACTTAAGAGAGAAAAGTGC
* * * *
84184 CAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAA-ACATAAAGGTGC
1 CAATATGCTGATTCAAGGCCAGCTACATTGGACTTAAGAGAGAAAAGTGC
* * * * *
84233 CAATATGCTGATTCAAGGCCAGCGATATTAGACTTAA-AGGTGAAAAAGGTAC
1 CAATATGCTGATTCAAGGCCAGCTACATTGGACTTAAGA-GAG-AAAA-GTGC
84285 CAATATGCTGATTCAAGGCCA
1 CAATATGCTGATTCAAGGCCA
84306 ACGATATTGG
Statistics
Matches: 691, Mismatches: 79, Indels: 176
0.73 0.08 0.19
Matches are distributed among these distances:
43 215 0.31
44 9 0.01
45 7 0.01
47 6 0.01
48 5 0.01
49 151 0.22
50 5 0.01
51 12 0.02
52 187 0.27
53 37 0.05
54 1 0.00
55 3 0.00
56 2 0.00
57 1 0.00
58 5 0.01
59 1 0.00
60 2 0.00
61 2 0.00
62 3 0.00
63 1 0.00
64 5 0.01
65 1 0.00
66 2 0.00
67 3 0.00
68 1 0.00
69 2 0.00
70 18 0.03
71 4 0.01
ACGTcount: A:0.32, C:0.17, G:0.25, T:0.25
Consensus pattern (50 bp):
CAATATGCTGATTCAAGGCCAGCTACATTGGACTTAAGAGAGAAAAGTGC
Found at i:83876 original size:95 final size:95
Alignment explanation
Indices: 83492--84034 Score: 857
Period size: 95 Copynumber: 5.8 Consensus size: 95
83482 TTAAAGATGA
* * * *
83492 TGAAGGTGCCAATATGCTGATTCAAGGCCAGCTACACTGAACTTAAAGATGGAAAAGGTGTCAAT
1 TGAAGGTGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATGGAAAAGGTGCCAAT
83557 ATGCTGATTCAAGGCCAGCTATATTGGACT
66 ATGCTGATTCAAGGCCAGCTATATTGGACT
* * * *
83587 TAAAAGTGCCAATGTGCTGATTCAAGGCTAGCTACATTGGACTTAAAGAT---AAAGGTACCAAT
1 TGAAGGTGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATGGAAAAGGTGCCAAT
* * *
83649 ATGCTGATTCAAGGCCAGCGATATTAGAAT
66 ATGCTGATTCAAGGCCAGCTATATTGGACT
*
83679 TGAAGGTGCCAATATGCTGATTCAAGGCCAGCTACATTGGACTT--A-A-GGAAGAAGGTGCCAA
1 TGAAGGTGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATGGAA-AAGGTGCCAA
*
83740 TATACTGATTCAAGGCCAGCTATATTGGACT
65 TATGCTGATTCAAGGCCAGCTATATTGGACT
*
83771 TAAAGGTGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATGGAAAAGGTGCCAAT
1 TGAAGGTGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATGGAAAAGGTGCCAAT
*
83836 GTGCTGATTCAAGGCCAGCTATATTGGACT
66 ATGCTGATTCAAGGCCAGCTATATTGGACT
*
83866 TGAAGATGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATGGAAAAGGTGCCAAT
1 TGAAGGTGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATGGAAAAGGTGCCAAT
83931 ATGCTGATTCAAGGCCAGCTATATTGGACT
66 ATGCTGATTCAAGGCCAGCTATATTGGACT
* *
83961 TGAAGGTGCCAATGTGCTGATTCAAGGCTAGCTACATTGGACTTAAAGATGGAAAAGGTGCCGAT
1 TGAAGGTGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATGGAAAAGGTGCCAAT
*
84026 GTGCTGATT
66 ATGCTGATT
84035 GGACTTGAAG
Statistics
Matches: 409, Mismatches: 31, Indels: 16
0.90 0.07 0.04
Matches are distributed among these distances:
89 1 0.00
90 1 0.00
91 1 0.00
92 155 0.38
94 1 0.00
95 246 0.60
96 4 0.01
ACGTcount: A:0.32, C:0.17, G:0.25, T:0.26
Consensus pattern (95 bp):
TGAAGGTGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATGGAAAAGGTGCCAAT
ATGCTGATTCAAGGCCAGCTATATTGGACT
Found at i:84066 original size:21 final size:21
Alignment explanation
Indices: 84042--84109 Score: 52
Period size: 21 Copynumber: 3.2 Consensus size: 21
84032 ATTGGACTTG
84042 AAGGTGCCAATGTGCTGATTC
1 AAGGTGCCAATGTGCTGATTC
* * *
84063 AAGGCCAGCTATAT-TG--GACTTG
1 AAGG--TGCCA-ATGTGCTGA-TTC
84085 AAGGTGCCAATGTGCTGATTC
1 AAGGTGCCAATGTGCTGATTC
84106 AAGG
1 AAGG
84110 CCAGCTACAT
Statistics
Matches: 34, Mismatches: 6, Indels: 14
0.63 0.11 0.26
Matches are distributed among these distances:
19 2 0.06
20 5 0.15
21 12 0.35
22 8 0.24
23 5 0.15
24 2 0.06
ACGTcount: A:0.26, C:0.18, G:0.29, T:0.26
Consensus pattern (21 bp):
AAGGTGCCAATGTGCTGATTC
Found at i:84199 original size:92 final size:92
Alignment explanation
Indices: 84042--84274 Score: 421
Period size: 92 Copynumber: 2.5 Consensus size: 92
84032 ATTGGACTTG
*
84042 AAGGTGCCAATGTGCTGATTCAAGGCCAGCTATATTGGACTTGAAGGTGCCAATGTGCTGATTCA
1 AAGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTGAAGGTGCCAATGTGCTGATTCA
*
84107 AGGCCAGCTACATTGGACTTAAAGATA
66 AGGCCAGCTACATTGGACTTAAACATA
84134 AAGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTGAAGGTGCCAATGTGCTGATTCA
1 AAGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTGAAGGTGCCAATGTGCTGATTCA
84199 AGGCCAGCTACATTGGACTTAAACATA
66 AGGCCAGCTACATTGGACTTAAACATA
* * *
84226 AAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTAGACTTAAAGGTG
1 AAGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTGAAGGTG
84275 AAAAAGGTAC
Statistics
Matches: 136, Mismatches: 5, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
92 136 1.00
ACGTcount: A:0.30, C:0.18, G:0.25, T:0.26
Consensus pattern (92 bp):
AAGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTGAAGGTGCCAATGTGCTGATTCA
AGGCCAGCTACATTGGACTTAAACATA
Found at i:84367 original size:33 final size:32
Alignment explanation
Indices: 84322--84584 Score: 363
Period size: 33 Copynumber: 8.1 Consensus size: 32
84312 TTGGGCTTAA
84322 AAGGGTTGCCACCGACTTGTGTGGGCTTTAGAG
1 AAGGG-TGCCACCGACTTGTGTGGGCTTTAGAG
*
84355 AATGGGTGCCACCAACTTGTGTGGGCTTTAG-G
1 AA-GGGTGCCACCGACTTGTGTGGGCTTTAGAG
84387 AAGGGTTGCCACCGACTTGTGTGGGCTTTAGAAG
1 AAGGG-TGCCACCGACTTGTGTGGGCTTTAG-AG
*
84421 AAGGTTGCCACCGACTTGTGTGGGCTTT-GAG
1 AAGGGTGCCACCGACTTGTGTGGGCTTTAGAG
84452 AAGGGTTGCCACCGACTTGTGTGGGCTTTAGAAG
1 AAGGG-TGCCACCGACTTGTGTGGGCTTTAG-AG
** *
84486 AAGCTTGCCACTGACTTGTGTGGGCTTT-GAG
1 AAGGGTGCCACCGACTTGTGTGGGCTTTAGAG
*
84517 AAGGGTTGCCACCGACTTATGTGGGCTTTAGAAG
1 AAGGG-TGCCACCGACTTGTGTGGGCTTTAG-AG
*
84551 AAGGTTGCCACCGACTTGTGTGGGCTTT-GAG
1 AAGGGTGCCACCGACTTGTGTGGGCTTTAGAG
84582 AAG
1 AAG
84585 AAAAAAGTGC
Statistics
Matches: 207, Mismatches: 13, Indels: 22
0.86 0.05 0.09
Matches are distributed among these distances:
31 19 0.09
32 74 0.36
33 95 0.46
34 19 0.09
ACGTcount: A:0.19, C:0.18, G:0.35, T:0.28
Consensus pattern (32 bp):
AAGGGTGCCACCGACTTGTGTGGGCTTTAGAG
Found at i:84405 original size:65 final size:65
Alignment explanation
Indices: 84322--84584 Score: 449
Period size: 65 Copynumber: 4.0 Consensus size: 65
84312 TTGGGCTTAA
* *
84322 AAGGGTTGCCACCGACTTGTGTGGGCTTTAG-AGAATGGGTGCCACCAACTTGTGTGGGCTTT-A
1 AAGGGTTGCCACCGACTTGTGTGGGCTTTAGAAGAA-GGTTGCCACCGACTTGTGTGGGCTTTGA
84385 GG
65 -G
84387 AAGGGTTGCCACCGACTTGTGTGGGCTTTAGAAGAAGGTTGCCACCGACTTGTGTGGGCTTTGAG
1 AAGGGTTGCCACCGACTTGTGTGGGCTTTAGAAGAAGGTTGCCACCGACTTGTGTGGGCTTTGAG
* *
84452 AAGGGTTGCCACCGACTTGTGTGGGCTTTAGAAGAAGCTTGCCACTGACTTGTGTGGGCTTTGAG
1 AAGGGTTGCCACCGACTTGTGTGGGCTTTAGAAGAAGGTTGCCACCGACTTGTGTGGGCTTTGAG
*
84517 AAGGGTTGCCACCGACTTATGTGGGCTTTAGAAGAAGGTTGCCACCGACTTGTGTGGGCTTTGAG
1 AAGGGTTGCCACCGACTTGTGTGGGCTTTAGAAGAAGGTTGCCACCGACTTGTGTGGGCTTTGAG
84582 AAG
1 AAG
84585 AAAAAAGTGC
Statistics
Matches: 189, Mismatches: 7, Indels: 4
0.94 0.04 0.02
Matches are distributed among these distances:
65 184 0.97
66 5 0.03
ACGTcount: A:0.19, C:0.18, G:0.35, T:0.28
Consensus pattern (65 bp):
AAGGGTTGCCACCGACTTGTGTGGGCTTTAGAAGAAGGTTGCCACCGACTTGTGTGGGCTTTGAG
Found at i:84606 original size:36 final size:34
Alignment explanation
Indices: 84569--85116 Score: 548
Period size: 34 Copynumber: 16.3 Consensus size: 34
84559 CACCGACTTG
* * * *
84569 TGTGGGCTTTGAGAAGAAAAAAGTGCCACAGAGT
1 TGTGGGCTTTAAAAAGAAAAAGGTGCCACGGAGT
84603 TGTGGGCTTTAAAAAGAAAAAGGTGCCACGGAGT
1 TGTGGGCTTTAAAAAGAAAAAGGTGCCACGGAGT
* *
84637 TGTGGCCTTTAAAAACAAAAAGGTGCCACGGAGT
1 TGTGGGCTTTAAAAAGAAAAAGGTGCCACGGAGT
* * * * *
84671 TGTGGAC-TTAAAAGGAACAAGATGCCACGGGGT
1 TGTGGGCTTTAAAAAGAAAAAGGTGCCACGGAGT
* * * *
84704 CGTGGAC-TTAAAAGGAACAAAGAGTGCCATGGAGT
1 TGTGGGCTTTAAAAAGAA-AAAG-GTGCCACGGAGT
* * *
84739 TGTGGGCTTTGAAAAGAACAAGGTGCCACGGGGT
1 TGTGGGCTTTAAAAAGAAAAAGGTGCCACGGAGT
* *
84773 CGTGGAC-TTAAAAAG-AAAAGGTGCCACGGAGT
1 TGTGGGCTTTAAAAAGAAAAAGGTGCCACGGAGT
* * * *
84805 GGTGGGCTTTGAAAAG---AAGATGCCATGGAGT
1 TGTGGGCTTTAAAAAGAAAAAGGTGCCACGGAGT
** * * * **
84836 CATGGAC-TTAAAAGGCACCAGGTGCCACGGAGT
1 TGTGGGCTTTAAAAAGAAAAAGGTGCCACGGAGT
*
84869 TGTGGGCTTTAAAAGGGAAAAAGAGTGCCACGGAGT
1 TGTGGGCTTTAAAA-AGAAAAAG-GTGCCACGGAGT
*
84905 TGTGGGCTTTGAAAAG---AAGGTGCCACGGAGT
1 TGTGGGCTTTAAAAAGAAAAAGGTGCCACGGAGT
* *
84936 TGTGGAC-TTAAAAGGAAAAAGAGTGCCACGGAGT
1 TGTGGGCTTTAAAAAGAAAAAG-GTGCCACGGAGT
84970 TGTGGGCTTTAAAAAGAAAAAGGTGCCACGGAGT
1 TGTGGGCTTTAAAAAGAAAAAGGTGCCACGGAGT
* * * * *
85004 TGT-GAC-ATAGAAGGAAAAAGAGTGCCACAGAGT
1 TGTGGGCTTTAAAAAGAAAAAG-GTGCCACGGAGT
85037 TGTGGGCTTTAAAAAAGAAAAAGGTTGCCACGGAGT
1 TGTGGGCTTT-AAAAAGAAAAAGG-TGCCACGGAGT
**
85073 TGTGGGCTTTAAAAAGAAAAAAATGCCACGGAGT
1 TGTGGGCTTTAAAAAGAAAAAGGTGCCACGGAGT
85107 TGTGGGCTTT
1 TGTGGGCTTT
85117 GAAGAAAAAA
Statistics
Matches: 427, Mismatches: 67, Indels: 40
0.80 0.13 0.07
Matches are distributed among these distances:
30 12 0.03
31 35 0.08
32 34 0.08
33 86 0.20
34 148 0.35
35 49 0.11
36 63 0.15
ACGTcount: A:0.34, C:0.14, G:0.33, T:0.20
Consensus pattern (34 bp):
TGTGGGCTTTAAAAAGAAAAAGGTGCCACGGAGT
Found at i:84864 original size:165 final size:166
Alignment explanation
Indices: 84569--85208 Score: 590
Period size: 168 Copynumber: 3.8 Consensus size: 166
84559 CACCGACTTG
* * * *
84569 TGTGGGCTTTGAGAAGAAAAAAGTGCCACAGAGTTGTGGGCTTTAAAAAGAAAAAGGTGCCACGG
1 TGTGGGCTTTGAAAAG-AAAAGGTGCCACGGAGTTGTGGAC-TTAAAAAGAAAAAGGTGCCACGG
* * * **
84634 AGTTGTGGCCTTTAAAAACAAAAAGGTGCCACGGAGTTGTGGACTTAAAAGGAACAAGATGCCAC
64 AGTTGTGGGCTTT--AAA-AAGAAGATGCCACGGAGTCATGGACTTAAAAGGAACAAGATGCCAC
* *
84699 GGGGTCGTGGAC-TTAAAA-GGAACAAAGAGTGCCATGGAGT
126 GGAGTCGTGGACTTTAAAAGGGAA-AAAGAGTGCCACGGAGT
* *
84739 TGTGGGCTTTGAAAAGAACAAGGTGCCACGGGGTCGTGGACTTAAAAAG-AAAAGGTGCCACGGA
1 TGTGGGCTTTGAAAAGAA-AAGGTGCCACGGAGTTGTGGACTTAAAAAGAAAAAGGTGCCACGGA
* * * * * *
84803 GTGGTGGGCTTTGAAAAGAAGATGCCATGGAGTCATGGACTTAAAAGGCACCAGGTGCCACGGAG
65 GTTGTGGGCTTTAAAAAGAAGATGCCACGGAGTCATGGACTTAAAAGGAACAAGATGCCACGGAG
* *
84868 TTGTGGGCTTTAAAAGGGAAAAAGAGTGCCACGGAGT
130 TCGTGGACTTTAAAAGGGAAAAAGAGTGCCACGGAGT
*
84905 TGTGGGCTTTGAAAAG--AAGGTGCCACGGAGTTGTGGACTTAAAAGGAAAAAGAGTGCCACGGA
1 TGTGGGCTTTGAAAAGAAAAGGTGCCACGGAGTTGTGGACTTAAAAAGAAAAAG-GTGCCACGGA
* * * *
84968 GTTGTGGGCTTTAAAAAGAAAAAGGTGCCACGGAGT--TGTGACATAGAAGGAAAAAGAGTGCCA
65 GTTGTGGGCTTTAAAAAG---AAGATGCCACGGAGTCATG-GACTTAAAAGGAACAAGA-TGCCA
* * * **
85031 CAGAGTTGTGGGCTTTAAAAAAGAAAAAG-GTTGCCACGGAGT
125 CGGAGTCGTGGACTTTAAAAGGGAAAAAGAG-TGCCACGGAGT
* ** * ** * *
85073 TGTGGGCTTTAAAAAGAAAAAAATGCCACGGAGTTGTGGGCTT-TGAAGAAAAA-ATGCCACTGA
1 TGTGGGCTTTGAAAAG-AAAAGGTGCCACGGAGTTGTGGACTTAAAAAGAAAAAGGTGCCACGGA
* * * * * * * *
85136 GTCGTGGACTTTGAGACA-AA-ATGCCACTGAGTCGTGGACTTTGAAAA--AA-AGGATGCCACT
65 GTTGTGGGCTTT-AAAAAGAAGATGCCACGGAGTCATGGAC-TT-AAAAGGAACAAGATGCCACG
85196 GAGTCGTGGACTT
127 GAGTCGTGGACTT
85209 CGAGCAGAGA
Statistics
Matches: 393, Mismatches: 58, Indels: 45
0.79 0.12 0.09
Matches are distributed among these distances:
163 44 0.11
164 18 0.05
165 80 0.20
166 45 0.11
167 20 0.05
168 113 0.29
169 13 0.03
170 39 0.10
171 21 0.05
ACGTcount: A:0.34, C:0.14, G:0.32, T:0.20
Consensus pattern (166 bp):
TGTGGGCTTTGAAAAGAAAAGGTGCCACGGAGTTGTGGACTTAAAAAGAAAAAGGTGCCACGGAG
TTGTGGGCTTTAAAAAGAAGATGCCACGGAGTCATGGACTTAAAAGGAACAAGATGCCACGGAGT
CGTGGACTTTAAAAGGGAAAAAGAGTGCCACGGAGT
Found at i:84931 original size:232 final size:229
Alignment explanation
Indices: 84623--85054 Score: 600
Period size: 232 Copynumber: 1.9 Consensus size: 229
84613 AAAAAGAAAA
84623 AGGTGCCACGGAGTTGTGGCCTTTAAAAACAAAAAGGTGCCACGGAGTTGTGGACTTAAAAGGAA
1 AGGTGCCACGGAGTTGTGGCCTTTAAAAACAAAAAGGTGCCACGGAGTTGTGGACTTAAAA-GAA
* * *
84688 CAAGATGCCACGGGGTCGTGGACTTAAAAGGAACAAAGAGTGCCATGGAGTTGTGGGCTTTGAAA
65 CAAGATGCCACGGAGTCGTGGACTTAAAAGGAA-AAAGAGTGCCACGGAGTTGTGGGCTTTAAAA
* * * *
84753 AGAACAAGGTGCCACGGGGTCGTGGACTTAAAAAG-AAAAG-GTGCCACGGAGTGGTGGGCTTTG
129 AGAAAAAGGTGCCACGGAGTCGT-GACATAAAAAGAAAAAGAGTGCCACAGAGTGGTGGGCTTT-
84816 AAAAGAAGATGCCATGGAGTCATGGACTTAAAAGGCACC
192 AAAA-AAGATGCCATGGAGTCATGGACTTAAAAGGCACC
* ** * **
84855 AGGTGCCACGGAGTTGTGGGCTTTAAAAGGGAAAAAGAGTGCCACGGAGTTGTGGGCTTTGAA-A
1 AGGTGCCACGGAGTTGTGGCCTTTAAAA-ACAAAAAG-GTGCCACGGAGTTGTGGACTTAAAAGA
* * *
84919 AGAAGGTGCCACGGAGTTGTGGACTTAAAAGGAAAAAGAGTGCCACGGAGTTGTGGGCTTTAAAA
64 ACAAGATGCCACGGAGTCGTGGACTTAAAAGGAAAAAGAGTGCCACGGAGTTGTGGGCTTTAAAA
* * * *
84984 AGAAAAAGGTGCCACGGAGTTGTGACATAGAAGGAAAAAGAGTGCCACAGAGTTGTGGGCTTTAA
129 AGAAAAAGGTGCCACGGAGTCGTGACATAAAAAGAAAAAGAGTGCCACAGAGTGGTGGGCTTTAA
85049 AAAAGA
194 AAAAGA
85055 AAAAGGTTGC
Statistics
Matches: 176, Mismatches: 20, Indels: 10
0.85 0.10 0.05
Matches are distributed among these distances:
230 12 0.07
231 58 0.33
232 78 0.44
233 6 0.03
234 22 0.12
ACGTcount: A:0.34, C:0.14, G:0.33, T:0.19
Consensus pattern (229 bp):
AGGTGCCACGGAGTTGTGGCCTTTAAAAACAAAAAGGTGCCACGGAGTTGTGGACTTAAAAGAAC
AAGATGCCACGGAGTCGTGGACTTAAAAGGAAAAAGAGTGCCACGGAGTTGTGGGCTTTAAAAAG
AAAAAGGTGCCACGGAGTCGTGACATAAAAAGAAAAAGAGTGCCACAGAGTGGTGGGCTTTAAAA
AAGATGCCATGGAGTCATGGACTTAAAAGGCACC
Found at i:85068 original size:168 final size:167
Alignment explanation
Indices: 84584--85090 Score: 615
Period size: 168 Copynumber: 3.0 Consensus size: 167
84574 GCTTTGAGAA
* * *
84584 GAAAA-AA-GTGCCACAGAGTTGTGGGCTTTAAAAAGAAAAAGGTGCCACGGAGTTGTGGCCTTT
1 GAAAAGAAGGTGCCACGGAGTTGTGGAC-TTAAAAAGAAAAAGGTGCCACGGAGTTGTGGGCTTT
* * * *
84647 AAAAACAAAAAGGTGCCACGGAGTTGTGGACTTAAAAGGAACAAGA-TGCCACGGGGTCGTGGAC
65 AAAAAGAAAAAGGTGCCACGGAGTTGT-GACTTAAAAGGAACAAGAGTGCCACGGAGTTGTGGGC
* *
84711 -TT-AAAAGGAACAAAGAGTGCCATGGAGTTGTGGGCTTT
129 TTTAAAAAAGAA-AAAGAGTGCCACGGAGTTGTGGGCTTT
* * *
84749 GAAAAGAACAAGGTGCCACGGGGTCGTGGACTTAAAAAG-AAAAGGTGCCACGGAGTGGTGGGCT
1 GAAAAG---AAGGTGCCACGGAGTTGTGGACTTAAAAAGAAAAAGGTGCCACGGAGTTGTGGGCT
* * * * *
84813 TTGAAAAG---AAGATGCCATGGAGTCATG-GACTTAAAAGGCACCAG-GTGCCACGGAGTTGTG
63 TTAAAAAGAAAAAGGTGCCACGGAGT--TGTGACTTAAAAGGAACAAGAGTGCCACGGAGTTGTG
**
84873 GGCTTTAAAAGGGAAAAAGAGTGCCACGGAGTTGTGGGCTTT
126 GGCTTTAAAAAAGAAAAAGAGTGCCACGGAGTTGTGGGCTTT
*
84915 GAAAAGAAGGTGCCACGGAGTTGTGGACTTAAAAGGAAAAAGAGTGCCACGGAGTTGTGGGCTTT
1 GAAAAGAAGGTGCCACGGAGTTGTGGACTTAAAAAGAAAAAG-GTGCCACGGAGTTGTGGGCTTT
* * * *
84980 AAAAAGAAAAAGGTGCCACGGAGTTGTGACATAGAAGGAAAAAGAGTGCCACAGAGTTGTGGGCT
65 AAAAAGAAAAAGGTGCCACGGAGTTGTGACTTAAAAGGAACAAGAGTGCCACGGAGTTGTGGGCT
85045 TTAAAAAAGAAAAAG-GTTGCCACGGAGTTGTGGGCTTT
130 TTAAAAAAGAAAAAGAG-TGCCACGGAGTTGTGGGCTTT
*
85083 AAAAAGAA
1 GAAAAGAA
85091 AAAAATGCCA
Statistics
Matches: 291, Mismatches: 33, Indels: 33
0.82 0.09 0.09
Matches are distributed among these distances:
163 27 0.09
164 5 0.02
165 74 0.25
166 36 0.12
167 22 0.08
168 102 0.35
169 10 0.03
170 15 0.05
ACGTcount: A:0.35, C:0.14, G:0.33, T:0.19
Consensus pattern (167 bp):
GAAAAGAAGGTGCCACGGAGTTGTGGACTTAAAAAGAAAAAGGTGCCACGGAGTTGTGGGCTTTA
AAAAGAAAAAGGTGCCACGGAGTTGTGACTTAAAAGGAACAAGAGTGCCACGGAGTTGTGGGCTT
TAAAAAAGAAAAAGAGTGCCACGGAGTTGTGGGCTTT
Found at i:85128 original size:31 final size:31
Alignment explanation
Indices: 84581--85429 Score: 323
Period size: 31 Copynumber: 26.0 Consensus size: 31
84571 TGGGCTTTGA
* *
84581 GAAGAAAAAAGTGCCACAGAGTTGTGGGCTTT
1 GAAGAAAAAA-TGCCACGGAGTTGTGGACTTT
* * *
84613 AAAAAGAAAAAGGTGCCACGGAGTTGTGGCCTTT
1 --GAAGAAAAA-ATGCCACGGAGTTGTGGACTTT
* * *
84647 AAAAACAAAAAGGTGCCACGGAGTTGTGGACTTA
1 GAAGA-AAAAA--TGCCACGGAGTTGTGGACTTT
* * * * *
84681 AAAGGAACAAGATGCCACGGGGTCGTGGACTTA
1 GAA-GAA-AAAATGCCACGGAGTTGTGGACTTT
* * *
84714 AAAGGAACAAAGAGTGCCATGGAGTTGTGGGCTTT
1 GAA-GAA-AAA-A-TGCCACGGAGTTGTGGACTTT
* * *
84749 GAA-AAGAACAAGGTGCCACGGGGTCGTGGACTTAA
1 GAAGAA-AA-AA--TGCCACGGAGTTGTGGACTT-T
* ** * *
84784 AAAGAAAAGGTGCCACGGAGTGGTGGGCTTT
1 GAAGAAAAAATGCCACGGAGTTGTGGACTTT
* * ** *
84815 GAA-AAGAAGATGCCATGGAGTCATGGACTTA
1 GAAGAA-AAAATGCCACGGAGTTGTGGACTTT
* ** ** *
84846 AAAGGCACCAGGTGCCACGGAGTTGTGGGCTTT
1 GAA-G-AAAAAATGCCACGGAGTTGTGGACTTT
* *
84879 AAAAGGGAAAAAGAGTGCCACGGAGTTGTGGGCTTT
1 -GAA--GAAAAA-A-TGCCACGGAGTTGTGGACTTT
** *
84915 GAA-AAGAAGGTGCCACGGAGTTGTGGACTTA
1 GAAGAA-AAAATGCCACGGAGTTGTGGACTTT
* *
84946 AAAGGAAAAAGAGTGCCACGGAGTTGTGGGCTTT
1 GAA-GAAAAA-A-TGCCACGGAGTTGTGGACTTT
* * * *
84980 AAAAAGAAAAAGGTGCCACGGAGTTGT-GACATA
1 --GAAGAAAAA-ATGCCACGGAGTTGTGGACTTT
* *
85013 GAAGGAAAAAGAGTGCCACAGAGTTGTGGGCTTT
1 GAA-GAAAAA-A-TGCCACGGAGTTGTGGACTTT
* * *
85047 AAAAAAGAAAAAGGTTGCCACGGAGTTGTGGGCTTT
1 ---GAAGAAAAA--ATGCCACGGAGTTGTGGACTTT
* *
85083 AAAAAGAAAAAAATGCCACGGAGTTGTGGGCTTT
1 --GAAG-AAAAAATGCCACGGAGTTGTGGACTTT
* *
85117 GAAGAAAAAATGCCACTGAGTCGTGGACTTT
1 GAAGAAAAAATGCCACGGAGTTGTGGACTTT
* * *
85148 G-AGACAAAATGCCACTGAGTCGTGGACTTT
1 GAAGAAAAAATGCCACGGAGTTGTGGACTTT
* * *
85178 GAA-AAAAAGGATGCCACTGAGTCGTGGACTTC
1 GAAGAAAAA--ATGCCACGGAGTTGTGGACTTT
* * * * *
85210 G-AGCAGAGATTGCCACTGAGTCGTGGACTTT
1 GAAG-AAAAAATGCCACGGAGTTGTGGACTTT
* * *
85241 GAAGAAAAGGATGCCACTGAGTCGTGGACTTT
1 GAAGAAAA-AATGCCACGGAGTTGTGGACTTT
* * * **
85273 G-AGAAGAGATTGCCACTGAGTCATGGACTTT
1 GAAGAA-AAAATGCCACGGAGTTGTGGACTTT
* * *
85304 GAAGAAAAGGATGCCACTGAGTCGTGGAC-TT
1 GAAGAAAA-AATGCCACGGAGTTGTGGACTTT
* * * * * *
85335 GGAGCAGAGATTGCCACTGAGTCGTGGACTTT
1 GAAG-AAAAAATGCCACGGAGTTGTGGACTTT
* ** * *
85367 GAAGAAAAGGATGCCACTAAGTCGTGAACTTT
1 GAAGAAAA-AATGCCACGGAGTTGTGGACTTT
* * * *
85399 G-AGAAGAGATTGCCACTGAGTCGTGGACTTT
1 GAAGAA-AAAATGCCACGGAGTTGTGGACTTT
85430 AAAAAGGTAT
Statistics
Matches: 650, Mismatches: 116, Indels: 101
0.75 0.13 0.12
Matches are distributed among these distances:
30 35 0.05
31 170 0.26
32 131 0.20
33 79 0.12
34 132 0.20
35 43 0.07
36 57 0.09
37 3 0.00
ACGTcount: A:0.33, C:0.15, G:0.31, T:0.21
Consensus pattern (31 bp):
GAAGAAAAAATGCCACGGAGTTGTGGACTTT
Found at i:85240 original size:63 final size:63
Alignment explanation
Indices: 85096--85434 Score: 499
Period size: 63 Copynumber: 5.4 Consensus size: 63
85086 AAGAAAAAAA
* * * *
85096 TGCCACGGAGTTGTGGGCTTTGAAGAAAAA--ATGCCACTGAGTCGTGGACTTTGAGACA-A-AA
1 TGCCACTGAGTCGTGGACTTTGAA-AAAAAGGATGCCACTGAGTCGTGGACTTTGAG-CAGAGAT
*
85157 TGCCACTGAGTCGTGGACTTTGAAAAAAAGGATGCCACTGAGTCGTGGACTTCGAGCAGAGAT
1 TGCCACTGAGTCGTGGACTTTGAAAAAAAGGATGCCACTGAGTCGTGGACTTTGAGCAGAGAT
* *
85220 TGCCACTGAGTCGTGGACTTTGAAGAAAAGGATGCCACTGAGTCGTGGACTTTGAGAAGAGAT
1 TGCCACTGAGTCGTGGACTTTGAAAAAAAGGATGCCACTGAGTCGTGGACTTTGAGCAGAGAT
* * *
85283 TGCCACTGAGTCATGGACTTTGAAGAAAAGGATGCCACTGAGTCGTGGACTTGGAGCAGAGAT
1 TGCCACTGAGTCGTGGACTTTGAAAAAAAGGATGCCACTGAGTCGTGGACTTTGAGCAGAGAT
* * * *
85346 TGCCACTGAGTCGTGGACTTTGAAGAAAAGGATGCCACTAAGTCGTGAACTTTGAGAAGAGAT
1 TGCCACTGAGTCGTGGACTTTGAAAAAAAGGATGCCACTGAGTCGTGGACTTTGAGCAGAGAT
85409 TGCCACTGAGTCGTGGACTTT-AAAAA
1 TGCCACTGAGTCGTGGACTTTGAAAAA
85435 GGTATTTGAA
Statistics
Matches: 257, Mismatches: 17, Indels: 7
0.91 0.06 0.02
Matches are distributed among these distances:
60 5 0.02
61 23 0.09
62 29 0.11
63 200 0.78
ACGTcount: A:0.30, C:0.17, G:0.30, T:0.23
Consensus pattern (63 bp):
TGCCACTGAGTCGTGGACTTTGAAAAAAAGGATGCCACTGAGTCGTGGACTTTGAGCAGAGAT
Found at i:85312 original size:126 final size:126
Alignment explanation
Indices: 85096--85434 Score: 551
Period size: 126 Copynumber: 2.7 Consensus size: 126
85086 AAGAAAAAAA
* * * * *
85096 TGCCACGGAGTTGTGGGCTTTGAAGAAAA-AATGCCACTGAGTCGTGGACTTTGAGACA-A-AAT
1 TGCCACTGAGTCGTGGACTTTGAAGAAAAGGATGCCACTGAGTCGTGGACTTTGAGA-AGAGATT
85158 GCCACTGAGTCGTGGACTTTGAAAAAAAGGATGCCACTGAGTCGTGGACTTCGAGCAGAGAT
65 GCCACTGAGTCGTGGACTTTGAAAAAAAGGATGCCACTGAGTCGTGGACTTCGAGCAGAGAT
85220 TGCCACTGAGTCGTGGACTTTGAAGAAAAGGATGCCACTGAGTCGTGGACTTTGAGAAGAGATTG
1 TGCCACTGAGTCGTGGACTTTGAAGAAAAGGATGCCACTGAGTCGTGGACTTTGAGAAGAGATTG
* * *
85285 CCACTGAGTCATGGACTTTGAAGAAAAGGATGCCACTGAGTCGTGGACTTGGAGCAGAGAT
66 CCACTGAGTCGTGGACTTTGAAAAAAAGGATGCCACTGAGTCGTGGACTTCGAGCAGAGAT
* *
85346 TGCCACTGAGTCGTGGACTTTGAAGAAAAGGATGCCACTAAGTCGTGAACTTTGAGAAGAGATTG
1 TGCCACTGAGTCGTGGACTTTGAAGAAAAGGATGCCACTGAGTCGTGGACTTTGAGAAGAGATTG
85411 CCACTGAGTCGTGGACTTT-AAAAA
66 CCACTGAGTCGTGGACTTTGAAAAA
85435 GGTATTTGAA
Statistics
Matches: 200, Mismatches: 12, Indels: 5
0.92 0.06 0.02
Matches are distributed among these distances:
124 27 0.14
125 31 0.16
126 142 0.71
ACGTcount: A:0.30, C:0.17, G:0.30, T:0.23
Consensus pattern (126 bp):
TGCCACTGAGTCGTGGACTTTGAAGAAAAGGATGCCACTGAGTCGTGGACTTTGAGAAGAGATTG
CCACTGAGTCGTGGACTTTGAAAAAAAGGATGCCACTGAGTCGTGGACTTCGAGCAGAGAT
Found at i:86382 original size:11 final size:11
Alignment explanation
Indices: 86368--86411 Score: 54
Period size: 11 Copynumber: 4.1 Consensus size: 11
86358 GGGTTTTTCC
86368 TTTTCTTTTTT
1 TTTTCTTTTTT
* *
86379 TTTTGTTTTTG
1 TTTTCTTTTTT
86390 TTTT-TTTTTT
1 TTTTCTTTTTT
*
86400 GTTTCTTTTTT
1 TTTTCTTTTTT
86411 T
1 T
86412 GTGAAGATTA
Statistics
Matches: 27, Mismatches: 5, Indels: 2
0.79 0.15 0.06
Matches are distributed among these distances:
10 8 0.30
11 19 0.70
ACGTcount: A:0.00, C:0.05, G:0.07, T:0.89
Consensus pattern (11 bp):
TTTTCTTTTTT
Found at i:86388 original size:17 final size:16
Alignment explanation
Indices: 86368--86411 Score: 63
Period size: 17 Copynumber: 2.8 Consensus size: 16
86358 GGGTTTTTCC
86368 TTTTCTTTTTTTTTTG
1 TTTTCTTTTTTTTTTG
*
86384 TTTTTGTTTTTTTTTTG
1 -TTTTCTTTTTTTTTTG
86401 -TTTCTTTTTTT
1 TTTTCTTTTTTT
86412 GTGAAGATTA
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
15 10 0.40
17 15 0.60
ACGTcount: A:0.00, C:0.05, G:0.07, T:0.89
Consensus pattern (16 bp):
TTTTCTTTTTTTTTTG
Found at i:86749 original size:12 final size:12
Alignment explanation
Indices: 86732--86768 Score: 58
Period size: 12 Copynumber: 3.2 Consensus size: 12
86722 GCCGTTGCAC
86732 TTTTTTTTGTGT
1 TTTTTTTTGTGT
86744 TTTTTTTTGT-T
1 TTTTTTTTGTGT
*
86755 TTGTTTTTGTGT
1 TTTTTTTTGTGT
86767 TT
1 TT
86769 ACTTTGACTG
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
11 10 0.43
12 13 0.57
ACGTcount: A:0.00, C:0.00, G:0.16, T:0.84
Consensus pattern (12 bp):
TTTTTTTTGTGT
Found at i:87418 original size:19 final size:18
Alignment explanation
Indices: 87392--87492 Score: 87
Period size: 19 Copynumber: 6.0 Consensus size: 18
87382 AATTTCAGCG
87392 ATTTGTATCGATACATAA
1 ATTTGTATCGATACATAA
87410 ATGTTGTATCGATAC---A
1 AT-TTGTATCGATACATAA
87426 A--TGTATCGATACATAA
1 ATTTGTATCGATACATAA
*
87442 GTATTGTATCGATAC---A
1 AT-TTGTATCGATACATAA
87458 A--TGTATCGATACATAA
1 ATTTGTATCGATACATAA
*
87474 GTATTGTATCGATACATAA
1 AT-TTGTATCGATACATAA
87493 TTAGCTACTG
Statistics
Matches: 67, Mismatches: 3, Indels: 25
0.71 0.03 0.26
Matches are distributed among these distances:
13 22 0.33
16 5 0.07
18 2 0.03
19 38 0.57
ACGTcount: A:0.38, C:0.12, G:0.15, T:0.36
Consensus pattern (18 bp):
ATTTGTATCGATACATAA
Found at i:87431 original size:32 final size:32
Alignment explanation
Indices: 87395--87489 Score: 172
Period size: 32 Copynumber: 3.0 Consensus size: 32
87385 TTCAGCGATT
* *
87395 TGTATCGATACATAAATGTTGTATCGATACAA
1 TGTATCGATACATAAGTATTGTATCGATACAA
87427 TGTATCGATACATAAGTATTGTATCGATACAA
1 TGTATCGATACATAAGTATTGTATCGATACAA
87459 TGTATCGATACATAAGTATTGTATCGATACA
1 TGTATCGATACATAAGTATTGTATCGATACA
87490 TAATTAGCTA
Statistics
Matches: 61, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
32 61 1.00
ACGTcount: A:0.37, C:0.13, G:0.16, T:0.35
Consensus pattern (32 bp):
TGTATCGATACATAAGTATTGTATCGATACAA
Found at i:87432 original size:13 final size:13
Alignment explanation
Indices: 87414--87470 Score: 60
Period size: 13 Copynumber: 3.9 Consensus size: 13
87404 ACATAAATGT
87414 TGTATCGATACAA
1 TGTATCGATACAA
87427 TGTATCGATACATAAGTA
1 TGTATCGATAC---A--A
87445 TTGTATCGATACAA
1 -TGTATCGATACAA
87459 TGTATCGATACA
1 TGTATCGATACA
87471 TAAGTATTGT
Statistics
Matches: 38, Mismatches: 0, Indels: 12
0.76 0.00 0.24
Matches are distributed among these distances:
13 23 0.61
14 1 0.03
16 2 0.05
18 1 0.03
19 11 0.29
ACGTcount: A:0.37, C:0.14, G:0.16, T:0.33
Consensus pattern (13 bp):
TGTATCGATACAA
Found at i:87576 original size:34 final size:33
Alignment explanation
Indices: 87511--87577 Score: 98
Period size: 34 Copynumber: 2.0 Consensus size: 33
87501 TGCCAAAGAA
*
87511 TGTATCGATACATTTTTCTGTGTATCAATACAT
1 TGTATCGATACATTATTCTGTGTATCAATACAT
* *
87544 TGTATCGATACATCTATTCTTTGTATCGATACAT
1 TGTATCGATACAT-TATTCTGTGTATCAATACAT
87578 CTAGGAAGTT
Statistics
Matches: 30, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
33 13 0.43
34 17 0.57
ACGTcount: A:0.27, C:0.16, G:0.12, T:0.45
Consensus pattern (33 bp):
TGTATCGATACATTATTCTGTGTATCAATACAT
Done.